@murphai/hosted-execution 0.1.15 → 0.1.17

package/node_modules/@murphai/core/dist/assessment/project.js

@@ -0,0 +1,353 @@
+import { profileSnapshotProfileSchema, safeParseContract, } from "@murphai/contracts";
+import { emitAuditRecord } from "../audit.js";
+import { toIsoTimestamp } from "../time.js";
+import { isPlainRecord } from "../types.js";
+import { VaultError } from "../errors.js";
+import { readAssessmentResponse } from "./storage.js";
+const CONTAINER_KEYS = ["response", "proposal", "proposals", "structured", "data"];
+function asArray(value) {
+    if (value === undefined || value === null) {
+        return [];
+    }
+    return Array.isArray(value) ? value : [value];
+}
+function toStringOrUndefined(value) {
+    if (value === undefined || value === null) {
+        return undefined;
+    }
+    const normalized = String(value).trim();
+    return normalized.length === 0 ? undefined : normalized;
+}
+function toStringArray(value) {
+    if (!Array.isArray(value)) {
+        return [];
+    }
+    return value
+        .map((entry) => toStringOrUndefined(entry))
+        .filter((entry) => entry !== undefined);
+}
+function toPlainObject(value, fallbackKey) {
+    if (isPlainRecord(value)) {
+        return value;
+    }
+    const scalar = toStringOrUndefined(value);
+    return scalar ? { [fallbackKey]: scalar } : null;
+}
+function buildSource(record, pointer) {
+    return {
+        assessmentId: record?.id,
+        assessmentPointer: pointer,
+        importedFrom: record?.source,
+        sourcePath: record?.rawPath,
+    };
+}
+function collectNodes(container, pointer) {
+    if (!isPlainRecord(container)) {
+        return [];
+    }
+    const nodes = [];
+    for (const key of CONTAINER_KEYS) {
+        const child = container[key];
+        if (isPlainRecord(child)) {
+            nodes.push({ pointer: `${pointer}/${key}`, value: child });
+            nodes.push(...collectNodes(child, `${pointer}/${key}`));
+        }
+    }
+    return nodes;
+}
+function resolveProjectionContainers(response) {
+    return [{ pointer: "", value: response }, ...collectNodes(response, "")];
+}
+function readCategoryEntries(containers, keys) {
+    const entries = [];
+    for (const container of containers) {
+        if (!isPlainRecord(container.value)) {
+            continue;
+        }
+        for (const key of keys) {
+            const candidate = container.value[key];
+            asArray(candidate).forEach((entry, index) => {
+                if (entry !== undefined && entry !== null) {
+                    entries.push({
+                        pointer: `${container.pointer}/${key}${Array.isArray(candidate) ? `/${index}` : ""}`,
+                        value: entry,
+                    });
+                }
+            });
+        }
+    }
+    return entries;
+}
+function normalizeGoalProposal(value, source) {
+    const raw = toPlainObject(value, "title");
+    if (!raw) {
+        return null;
+    }
+    const title = toStringOrUndefined(raw.title) ??
+        toStringOrUndefined(raw.name) ??
+        toStringOrUndefined(raw.goal) ??
+        toStringOrUndefined(raw.label);
+    if (!title) {
+        return null;
+    }
+    return {
+        source,
+        title,
+        status: toStringOrUndefined(raw.status),
+        horizon: toStringOrUndefined(raw.horizon),
+        priority: toStringOrUndefined(raw.priority),
+        note: toStringOrUndefined(raw.note) ??
+            toStringOrUndefined(raw.description) ??
+            toStringOrUndefined(raw.details),
+        tags: toStringArray(raw.tags),
+        raw,
+    };
+}
+function normalizeConditionProposal(value, source) {
+    const raw = toPlainObject(value, "name");
+    if (!raw) {
+        return null;
+    }
+    const name = toStringOrUndefined(raw.name) ??
+        toStringOrUndefined(raw.condition) ??
+        toStringOrUndefined(raw.diagnosis) ??
+        toStringOrUndefined(raw.label);
+    if (!name) {
+        return null;
+    }
+    return {
+        source,
+        name,
+        status: toStringOrUndefined(raw.status),
+        onsetAt: toStringOrUndefined(raw.onsetAt) ??
+            toStringOrUndefined(raw.diagnosedAt) ??
+            toStringOrUndefined(raw.recordedAt),
+        note: toStringOrUndefined(raw.note) ??
+            toStringOrUndefined(raw.description) ??
+            toStringOrUndefined(raw.details),
+        raw,
+    };
+}
+function normalizeAllergyProposal(value, source) {
+    const raw = toPlainObject(value, "substance");
+    if (!raw) {
+        return null;
+    }
+    const substance = toStringOrUndefined(raw.substance) ??
+        toStringOrUndefined(raw.allergen) ??
+        toStringOrUndefined(raw.name) ??
+        toStringOrUndefined(raw.label);
+    if (!substance) {
+        return null;
+    }
+    return {
+        source,
+        substance,
+        reaction: toStringOrUndefined(raw.reaction) ??
+            toStringOrUndefined(raw.reactions),
+        severity: toStringOrUndefined(raw.severity),
+        note: toStringOrUndefined(raw.note) ??
+            toStringOrUndefined(raw.description),
+        raw,
+    };
+}
+function normalizeProtocolProposal(value, source) {
+    const raw = toPlainObject(value, "name");
+    if (!raw) {
+        return null;
+    }
+    const name = toStringOrUndefined(raw.name) ??
+        toStringOrUndefined(raw.medicationName) ??
+        toStringOrUndefined(raw.supplementName) ??
+        toStringOrUndefined(raw.label);
+    if (!name) {
+        return null;
+    }
+    const dose = [toStringOrUndefined(raw.dose), toStringOrUndefined(raw.unit)]
+        .filter((entry) => entry !== undefined)
+        .join(" ")
+        .trim();
+    return {
+        source,
+        name,
+        kind: toStringOrUndefined(raw.kind) ?? toStringOrUndefined(raw.type),
+        status: toStringOrUndefined(raw.status),
+        dose: dose || undefined,
+        schedule: toStringOrUndefined(raw.schedule) ??
+            toStringOrUndefined(raw.frequency),
+        note: toStringOrUndefined(raw.note) ??
+            toStringOrUndefined(raw.instructions),
+        raw,
+    };
+}
+function normalizeHistoryEventProposal(value, source) {
+    const raw = toPlainObject(value, "title");
+    if (!raw) {
+        return null;
+    }
+    const title = toStringOrUndefined(raw.title) ??
+        toStringOrUndefined(raw.name) ??
+        toStringOrUndefined(raw.event) ??
+        toStringOrUndefined(raw.label);
+    if (!title) {
+        return null;
+    }
+    const occurredAtCandidate = toStringOrUndefined(raw.occurredAt) ??
+        toStringOrUndefined(raw.recordedAt) ??
+        toStringOrUndefined(raw.date);
+    return {
+        source,
+        kind: toStringOrUndefined(raw.kind) ??
+            toStringOrUndefined(raw.type) ??
+            "note",
+        title,
+        occurredAt: occurredAtCandidate === undefined
+            ? undefined
+            : toIsoTimestamp(occurredAtCandidate, "occurredAt"),
+        note: toStringOrUndefined(raw.note) ??
+            toStringOrUndefined(raw.description),
+        raw,
+    };
+}
+function normalizeFamilyMemberProposal(value, source) {
+    const raw = toPlainObject(value, "name");
+    if (!raw) {
+        return null;
+    }
+    const name = toStringOrUndefined(raw.name) ??
+        toStringOrUndefined(raw.label) ??
+        toStringOrUndefined(raw.relative) ??
+        toStringOrUndefined(raw.relationship);
+    if (!name) {
+        return null;
+    }
+    return {
+        source,
+        name,
+        relationship: toStringOrUndefined(raw.relationship) ??
+            toStringOrUndefined(raw.relation),
+        note: toStringOrUndefined(raw.note) ??
+            toStringOrUndefined(raw.description),
+        raw,
+    };
+}
+function normalizeGeneticVariantProposal(value, source) {
+    const raw = toPlainObject(value, "variant");
+    if (!raw) {
+        return null;
+    }
+    const variant = toStringOrUndefined(raw.variant) ??
+        toStringOrUndefined(raw.name) ??
+        toStringOrUndefined(raw.label);
+    if (!variant) {
+        return null;
+    }
+    return {
+        source,
+        gene: toStringOrUndefined(raw.gene),
+        variant,
+        significance: toStringOrUndefined(raw.significance) ??
+            toStringOrUndefined(raw.classification),
+        zygosity: toStringOrUndefined(raw.zygosity),
+        raw,
+    };
+}
+function normalizeProfileSnapshotProposal(value, source) {
+    if (!isPlainRecord(value)) {
+        return null;
+    }
+    const nestedProfile = isPlainRecord(value.profile) ? value.profile : null;
+    const profile = nestedProfile ?? value;
+    const parsedProfile = safeParseContract(profileSnapshotProfileSchema, profile);
+    if (!parsedProfile.success) {
+        return null;
+    }
+    return {
+        source: source.importedFrom === "derived" ? "derived" :
+            source.assessmentId ? "assessment_projection" : "manual",
+        sourceAssessmentIds: source.assessmentId ? [source.assessmentId] : undefined,
+        profile: parsedProfile.data,
+    };
+}
+async function resolveAssessmentResponse(input) {
+    if (input.assessmentResponse) {
+        return input.assessmentResponse;
+    }
+    if (input.vaultRoot && input.assessmentId) {
+        return readAssessmentResponse({
+            vaultRoot: input.vaultRoot,
+            assessmentId: input.assessmentId,
+        });
+    }
+    if (input.assessmentId) {
+        throw new VaultError("ASSESSMENT_RESPONSE_PROJECT_INVALID", "vaultRoot is required when projecting by assessmentId.", { assessmentId: input.assessmentId });
+    }
+    return undefined;
+}
+export async function projectAssessmentResponse(input) {
+    const assessmentResponse = await resolveAssessmentResponse(input);
+    const response = assessmentResponse?.responses;
+    if (!response) {
+        throw new VaultError("ASSESSMENT_RESPONSE_PROJECT_INVALID", "Assessment response payload is required for projection.");
+    }
+    const containers = resolveProjectionContainers(response);
+    const profileSnapshots = readCategoryEntries(containers, [
+        "profile",
+        "profileSnapshot",
+        "profileSnapshots",
+        "currentProfile",
+    ])
+        .map((entry) => normalizeProfileSnapshotProposal(entry.value, buildSource(assessmentResponse, entry.pointer)))
+        .filter((entry) => entry !== null);
+    const goals = readCategoryEntries(containers, ["goals", "goal"])
+        .map((entry) => normalizeGoalProposal(entry.value, buildSource(assessmentResponse, entry.pointer)))
+        .filter((entry) => entry !== null);
+    const conditions = readCategoryEntries(containers, ["conditions", "condition"])
+        .map((entry) => normalizeConditionProposal(entry.value, buildSource(assessmentResponse, entry.pointer)))
+        .filter((entry) => entry !== null);
+    const allergies = readCategoryEntries(containers, ["allergies", "allergy"])
+        .map((entry) => normalizeAllergyProposal(entry.value, buildSource(assessmentResponse, entry.pointer)))
+        .filter((entry) => entry !== null);
+    const protocols = readCategoryEntries(containers, ["protocols", "protocol", "medications", "supplements"])
+        .map((entry) => normalizeProtocolProposal(entry.value, buildSource(assessmentResponse, entry.pointer)))
+        .filter((entry) => entry !== null);
+    const historyEvents = readCategoryEntries(containers, ["historyEvents", "history", "events", "historyEvent"])
+        .map((entry) => normalizeHistoryEventProposal(entry.value, buildSource(assessmentResponse, entry.pointer)))
+        .filter((entry) => entry !== null);
+    const familyMembers = readCategoryEntries(containers, ["familyMembers", "family", "familyMember"])
+        .map((entry) => normalizeFamilyMemberProposal(entry.value, buildSource(assessmentResponse, entry.pointer)))
+        .filter((entry) => entry !== null);
+    const geneticVariants = readCategoryEntries(containers, [
+        "geneticVariants",
+        "variants",
+        "genetics",
+        "geneticVariant",
+    ])
+        .map((entry) => normalizeGeneticVariantProposal(entry.value, buildSource(assessmentResponse, entry.pointer)))
+        .filter((entry) => entry !== null);
+    const proposal = {
+        assessmentId: assessmentResponse.id,
+        sourcePath: assessmentResponse.rawPath,
+        profileSnapshots,
+        goals,
+        conditions,
+        allergies,
+        protocols,
+        historyEvents,
+        familyMembers,
+        geneticVariants,
+    };
+    if (input.vaultRoot) {
+        const audit = await emitAuditRecord({
+            vaultRoot: input.vaultRoot,
+            action: "intake_project",
+            commandName: "core.projectAssessmentResponse",
+            summary: `Projected assessment ${assessmentResponse.id} into health proposals.`,
+            occurredAt: new Date(),
+            targetIds: [assessmentResponse.id],
+        });
+        proposal.auditPath = audit.relativePath;
+    }
+    return proposal;
+}
+//# sourceMappingURL=project.js.map

package/node_modules/@murphai/core/dist/assessment/project.js.map

@@ -0,0 +1 @@
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package/node_modules/@murphai/core/dist/assessment/storage.d.ts

@@ -0,0 +1,13 @@
+import type { AssessmentResponseRecord, ImportAssessmentResponseInput, ImportAssessmentResponseResult } from "./types.ts";
+interface ReadAssessmentResponseInput {
+    vaultRoot: string;
+    assessmentId: string;
+}
+interface ListAssessmentResponsesInput {
+    vaultRoot: string;
+}
+export declare function importAssessmentResponse({ vaultRoot, sourcePath, assessmentType, title, recordedAt, importedAt, source, questionnaireSlug, relatedIds, }: ImportAssessmentResponseInput): Promise<ImportAssessmentResponseResult>;
+export declare function listAssessmentResponses({ vaultRoot, }: ListAssessmentResponsesInput): Promise<AssessmentResponseRecord[]>;
+export declare function readAssessmentResponse({ vaultRoot, assessmentId, }: ReadAssessmentResponseInput): Promise<AssessmentResponseRecord>;
+export {};
+//# sourceMappingURL=storage.d.ts.map

package/node_modules/@murphai/core/dist/assessment/storage.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"storage.d.ts","sourceRoot":"","sources":["../../src/assessment/storage.ts"],"names":[],"mappings":"AAqBA,OAAO,KAAK,EACV,wBAAwB,EACxB,6BAA6B,EAC7B,8BAA8B,EAC/B,MAAM,YAAY,CAAC;AAGpB,UAAU,2BAA2B;IACnC,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,UAAU,4BAA4B;IACpC,SAAS,EAAE,MAAM,CAAC;CACnB;AAqFD,wBAAsB,wBAAwB,CAAC,EAC7C,SAAS,EACT,UAAU,EACV,cAAc,EACd,KAAK,EACL,UAAU,EACV,UAAU,EACV,MAAM,EACN,iBAAiB,EACjB,UAAU,GACX,EAAE,6BAA6B,GAAG,OAAO,CAAC,8BAA8B,CAAC,CAyGzE;AAED,wBAAsB,uBAAuB,CAAC,EAC5C,SAAS,GACV,EAAE,4BAA4B,GAAG,OAAO,CAAC,wBAAwB,EAAE,CAAC,CAgBpE;AAED,wBAAsB,sBAAsB,CAAC,EAC3C,SAAS,EACT,YAAY,GACb,EAAE,2BAA2B,GAAG,OAAO,CAAC,wBAAwB,CAAC,CAWjE"}

package/node_modules/@murphai/core/dist/assessment/storage.js

@@ -0,0 +1,202 @@
+import { basename } from "node:path";
+import { readFile } from "node:fs/promises";
+import { assessmentResponseSchema, jsonObjectSchema, safeParseContract, } from "@murphai/contracts";
+import { buildAuditRecord, resolveAuditShardPath } from "../audit.js";
+import { generateRecordId } from "../ids.js";
+import { readJsonlRecords, toMonthlyShardRelativePath } from "../jsonl.js";
+import { walkVaultFiles } from "../fs.js";
+import { stageRawImportManifest } from "../operations/raw-manifests.js";
+import { WriteBatch } from "../operations/write-batch.js";
+import { prepareRawArtifact } from "../raw.js";
+import { toIsoTimestamp } from "../time.js";
+import { VaultError } from "../errors.js";
+import { isPlainRecord } from "../types.js";
+import { ASSESSMENT_LEDGER_DIRECTORY, ASSESSMENT_RESPONSE_SCHEMA_VERSION } from "./types.js";
+function parseAssessmentResponse(content) {
+    let parsed;
+    try {
+        parsed = JSON.parse(content);
+    }
+    catch (error) {
+        throw new VaultError("ASSESSMENT_INVALID_JSON", "Assessment response must be valid JSON.", {
+            cause: error instanceof Error ? error.message : String(error),
+        });
+    }
+    const result = safeParseContract(jsonObjectSchema, parsed);
+    if (!result.success) {
+        throw new VaultError("ASSESSMENT_INVALID_JSON", "Assessment response root must be a plain object.");
+    }
+    return result.data;
+}
+function toAssessmentResponseRecord(value) {
+    if (!isPlainRecord(value)) {
+        throw new VaultError("ASSESSMENT_RESPONSE_INVALID", "Assessment response record must be an object.");
+    }
+    const rawPath = normalizeRawPath(value.rawPath);
+    const relatedIds = normalizeRelatedIds(value.relatedIds);
+    const result = safeParseContract(assessmentResponseSchema, {
+        schemaVersion: value.schemaVersion,
+        id: value.id,
+        assessmentType: value.assessmentType,
+        recordedAt: value.recordedAt,
+        source: value.source,
+        rawPath,
+        title: value.title,
+        questionnaireSlug: value.questionnaireSlug,
+        responses: value.responses,
+    });
+    if (!result.success) {
+        throw new VaultError("ASSESSMENT_RESPONSE_INVALID", "Assessment response record failed contract validation.", {
+            errors: result.errors,
+        });
+    }
+    return {
+        ...result.data,
+        rawPath,
+        ...(relatedIds ? { relatedIds } : {}),
+    };
+}
+function normalizeRelatedIds(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (!Array.isArray(value) || value.some((entry) => typeof entry !== "string")) {
+        throw new VaultError("ASSESSMENT_RESPONSE_INVALID", "Assessment response relatedIds must be a string array.");
+    }
+    return value;
+}
+function normalizeRawPath(value) {
+    if (typeof value !== "string") {
+        throw new VaultError("ASSESSMENT_RESPONSE_INVALID", "Assessment response rawPath is invalid.", {
+            rawPath: value instanceof Error ? value.message : String(value),
+        });
+    }
+    return value;
+}
+function sortAssessmentResponses(records) {
+    return [...records].sort((left, right) => {
+        if (left.recordedAt !== right.recordedAt) {
+            return left.recordedAt.localeCompare(right.recordedAt);
+        }
+        return left.id.localeCompare(right.id);
+    });
+}
+export async function importAssessmentResponse({ vaultRoot, sourcePath, assessmentType, title, recordedAt, importedAt, source, questionnaireSlug, relatedIds, }) {
+    const recordedTimestamp = toIsoTimestamp(recordedAt ?? importedAt ?? new Date(), "recordedAt");
+    const id = generateRecordId("asmt");
+    const content = await readFile(sourcePath, "utf8");
+    const responses = parseAssessmentResponse(content);
+    const raw = prepareRawArtifact({
+        sourcePath,
+        category: "assessments",
+        occurredAt: recordedTimestamp,
+        recordId: id,
+    });
+    const batch = await WriteBatch.create({
+        vaultRoot,
+        operationType: "assessment_import",
+        summary: `Import assessment ${id}`,
+        occurredAt: recordedTimestamp,
+    });
+    const stagedRaw = await batch.stageRawCopy({
+        sourcePath,
+        targetRelativePath: raw.relativePath,
+        originalFileName: raw.originalFileName,
+        mediaType: raw.mediaType,
+    });
+    const assessment = toAssessmentResponseRecord({
+        schemaVersion: ASSESSMENT_RESPONSE_SCHEMA_VERSION,
+        id,
+        assessmentType: typeof assessmentType === "string" && assessmentType.trim() ? assessmentType.trim() : "intake",
+        recordedAt: recordedTimestamp,
+        source: source ?? "import",
+        rawPath: raw.relativePath,
+        title: typeof title === "string" && title.trim() ? title.trim() : basename(sourcePath),
+        questionnaireSlug: typeof questionnaireSlug === "string" && questionnaireSlug.trim()
+            ? questionnaireSlug.trim()
+            : undefined,
+        responses,
+        relatedIds: relatedIds && relatedIds.length > 0
+            ? [...new Set(relatedIds.map((entry) => entry.trim()).filter(Boolean))]
+            : undefined,
+    });
+    const ledgerPath = toMonthlyShardRelativePath(ASSESSMENT_LEDGER_DIRECTORY, recordedTimestamp, "recordedAt");
+    const manifestPath = await stageRawImportManifest({
+        batch,
+        importId: assessment.id,
+        importKind: "assessment",
+        importedAt: assessment.recordedAt,
+        source: assessment.source ?? source ?? null,
+        artifacts: [
+            {
+                role: "source_assessment",
+                raw: stagedRaw,
+            },
+        ],
+        canonicalProvenance: {
+            assessmentType: assessment.assessmentType,
+            title: assessment.title ?? null,
+            questionnaireSlug: assessment.questionnaireSlug ?? null,
+            relatedIds: assessment.relatedIds ?? [],
+            lookupId: assessment.id,
+            ledgerFile: ledgerPath,
+        },
+    });
+    await batch.stageJsonlAppend(ledgerPath, `${JSON.stringify(assessment)}\n`);
+    const audit = buildAuditRecord({
+        action: "intake_import",
+        commandName: "core.importAssessmentResponse",
+        summary: `Imported assessment ${assessment.id}.`,
+        occurredAt: recordedTimestamp,
+        targetIds: [assessment.id],
+        changes: [
+            {
+                path: raw.relativePath,
+                op: "copy",
+            },
+            {
+                path: ledgerPath,
+                op: "append",
+            },
+            {
+                path: manifestPath,
+                op: "create",
+            },
+        ],
+    });
+    const auditPath = resolveAuditShardPath(audit.occurredAt);
+    await batch.stageJsonlAppend(auditPath, `${JSON.stringify(audit)}\n`);
+    await batch.commit();
+    return {
+        assessment,
+        raw,
+        ledgerPath,
+        auditPath,
+        manifestPath,
+    };
+}
+export async function listAssessmentResponses({ vaultRoot, }) {
+    const shardPaths = await walkVaultFiles(vaultRoot, ASSESSMENT_LEDGER_DIRECTORY, {
+        extension: ".jsonl",
+    });
+    const records = [];
+    for (const shardPath of shardPaths) {
+        const shardRecords = await readJsonlRecords({
+            vaultRoot,
+            relativePath: shardPath,
+        });
+        records.push(...shardRecords.map((record) => toAssessmentResponseRecord(record)));
+    }
+    return sortAssessmentResponses(records);
+}
+export async function readAssessmentResponse({ vaultRoot, assessmentId, }) {
+    const records = await listAssessmentResponses({ vaultRoot });
+    const match = records.find((record) => record.id === assessmentId);
+    if (!match) {
+        throw new VaultError("ASSESSMENT_RESPONSE_NOT_FOUND", `Assessment response "${assessmentId}" was not found.`, {
+            assessmentId,
+        });
+    }
+    return match;
+}
+//# sourceMappingURL=storage.js.map

package/node_modules/@murphai/core/dist/assessment/storage.js.map

@@ -0,0 +1 @@
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