@mrpatronz/nexusflow 2.4.0 → 2.5.0

package/dist/core/isolate.d.ts

@@ -0,0 +1,31 @@
+/**
+ * @module core/isolate
+ * Provides on-demand worktree isolation for repositories in in-place workspaces.
+ */
+export interface IsolateRepoOptions {
+    /** Target feature branch name to create/checkout in the worktree. */
+    branchName?: string;
+    /** Base branch to branch off (defaults to repo's default branch). */
+    baseBranch?: string;
+}
+export interface IsolateRepoResult {
+    repoName: string;
+    sourcePath: string;
+    worktreePath: string;
+    branchName: string;
+    baseBranch: string;
+    alreadyIsolated: boolean;
+}
+/**
+ * Dynamically isolates a repository in an in-place workspace into a dedicated
+ * worktree directory inside the workspace.
+ *
+ * If the workspace is in worktree mode, or the repository is already isolated,
+ * this is a safe no-op that returns existing isolation details.
+ *
+ * @param workspacePath  - Absolute path to the workspace directory.
+ * @param repoNameOrPath - Name or absolute path of the repository to isolate.
+ * @param options        - Branch and base branch options.
+ */
+export declare function isolateWorkspaceRepo(workspacePath: string, repoNameOrPath: string, options?: IsolateRepoOptions): Promise<IsolateRepoResult>;
+//# sourceMappingURL=isolate.d.ts.map

package/dist/core/isolate.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/isolate.js

@@ -0,0 +1,175 @@
+/**
+ * @module core/isolate
+ * Provides on-demand worktree isolation for repositories in in-place workspaces.
+ */
+import * as fs from 'node:fs/promises';
+import * as path from 'node:path';
+import { execa } from 'execa';
+import { createWorktree, removeWorktree } from './worktree.js';
+import { loadFeatureConfig, saveFeatureConfig } from './workspace.js';
+import { refreshWorkspace } from './refresh.js';
+import { detectDefaultBranch, isValidBranchName } from '../utils/git.js';
+import { isInPlace } from '../utils/feature.js';
+function assertWithin(baseDir, target) {
+    const base = path.resolve(baseDir);
+    const resolved = path.resolve(target);
+    if (resolved !== base && !resolved.startsWith(base + path.sep)) {
+        throw new Error(`Target path "${target}" escapes workspace base directory "${baseDir}".`);
+    }
+    return resolved;
+}
+/**
+ * Dynamically isolates a repository in an in-place workspace into a dedicated
+ * worktree directory inside the workspace.
+ *
+ * If the workspace is in worktree mode, or the repository is already isolated,
+ * this is a safe no-op that returns existing isolation details.
+ *
+ * @param workspacePath  - Absolute path to the workspace directory.
+ * @param repoNameOrPath - Name or absolute path of the repository to isolate.
+ * @param options        - Branch and base branch options.
+ */
+export async function isolateWorkspaceRepo(workspacePath, repoNameOrPath, options = {}) {
+    const feature = await loadFeatureConfig(workspacePath);
+    if (!feature) {
+        throw new Error(`Workspace manifest not found at ${workspacePath}`);
+    }
+    const trimmed = repoNameOrPath.trim();
+    if (!trimmed || /[\r\n]/.test(trimmed)) {
+        throw new Error(`Invalid repository name or path: "${repoNameOrPath}".`);
+    }
+    const normalizedTarget = path.normalize(trimmed).toLowerCase();
+    const targetBasename = path.basename(trimmed).toLowerCase();
+    // Match against feature.repos (case-insensitive for Windows resilience)
+    const repoIndex = feature.repos.findIndex((r) => {
+        const norm = path.normalize(r).toLowerCase();
+        return norm === normalizedTarget || path.basename(r).toLowerCase() === targetBasename;
+    });
+    if (repoIndex === -1) {
+        throw new Error(`Repository "${repoNameOrPath}" is not part of workspace "${feature.id}".`);
+    }
+    const repoEntry = feature.repos[repoIndex];
+    const repoName = path.basename(repoEntry);
+    const sourcePath = feature.originalRepos?.[repoIndex] ?? repoEntry;
+    // If not in-place mode, all repos are already isolated worktrees
+    if (!isInPlace(feature)) {
+        const worktreePath = path.resolve(workspacePath, repoName);
+        return {
+            repoName,
+            sourcePath,
+            worktreePath,
+            branchName: feature.repoBranches?.[repoName] ?? feature.branchName,
+            baseBranch: await detectDefaultBranch(sourcePath),
+            alreadyIsolated: true,
+        };
+    }
+    // Case-insensitive lookup for existing isolation
+    const isolatedKey = Object.keys(feature.isolatedRepos || {}).find((k) => k.toLowerCase() === repoName.toLowerCase() || k.toLowerCase() === trimmed.toLowerCase());
+    const existingIsolation = isolatedKey ? feature.isolatedRepos?.[isolatedKey] : undefined;
+    if (existingIsolation) {
+        try {
+            await fs.access(existingIsolation.worktreePath);
+            return {
+                repoName,
+                sourcePath,
+                worktreePath: existingIsolation.worktreePath,
+                branchName: existingIsolation.branchName,
+                baseBranch: existingIsolation.baseBranch ?? (await detectDefaultBranch(sourcePath)),
+                alreadyIsolated: true,
+            };
+        }
+        catch {
+            // Directory no longer exists on disk; prune worktree registration and recreate
+            try {
+                await execa('git', ['worktree', 'prune'], { cwd: sourcePath });
+            }
+            catch { }
+        }
+    }
+    const defaultBranch = await detectDefaultBranch(sourcePath);
+    const baseBranch = options.baseBranch || defaultBranch || 'main';
+    const branchName = options.branchName ||
+        (feature.branchName && feature.branchName !== feature.id
+            ? feature.branchName
+            : `feat/${repoName}-${feature.id}`);
+    if (!isValidBranchName(branchName)) {
+        throw new Error(`Invalid branch name "${branchName}".`);
+    }
+    if (!isValidBranchName(baseBranch)) {
+        throw new Error(`Invalid base branch name "${baseBranch}".`);
+    }
+    const worktreePath = assertWithin(workspacePath, path.join(workspacePath, repoName));
+    // Prune any stale worktree registrations prior to creation
+    try {
+        await execa('git', ['worktree', 'prune'], { cwd: sourcePath });
+    }
+    catch { }
+    let worktreeCreated = false;
+    let branchCreated = false;
+    try {
+        // 1. Create the git worktree
+        const wtRes = await createWorktree(sourcePath, worktreePath, branchName, baseBranch);
+        worktreeCreated = true;
+        branchCreated = wtRes.createdBranch;
+        // 2. Update .gitignore in workspace root to ignore the newly created worktree folder
+        try {
+            const gitignorePath = path.join(workspacePath, '.gitignore');
+            let gitignoreContent = '';
+            try {
+                gitignoreContent = await fs.readFile(gitignorePath, 'utf-8');
+            }
+            catch { }
+            const entry = `/${repoName}/`;
+            if (!gitignoreContent.includes(entry)) {
+                await fs.writeFile(gitignorePath, gitignoreContent ? `${gitignoreContent.trimEnd()}\n${entry}\n` : `${entry}\n`, 'utf-8');
+            }
+        }
+        catch (error) {
+            console.warn(`Warning: failed to update .gitignore for isolated repo ${repoName}:`, error);
+        }
+        // 3. Atomically update manifest using freshest state
+        const freshFeature = (await loadFeatureConfig(workspacePath)) ?? feature;
+        if (!freshFeature.isolatedRepos) {
+            freshFeature.isolatedRepos = {};
+        }
+        const isolatedInfo = {
+            worktreePath,
+            branchName,
+            baseBranch,
+            isolatedAt: new Date().toISOString(),
+        };
+        freshFeature.isolatedRepos[repoName] = isolatedInfo;
+        await saveFeatureConfig(workspacePath, freshFeature);
+        // 4. Refresh workspace context files (.code-workspace, AGENTS.md, etc.)
+        try {
+            await refreshWorkspace(workspacePath);
+        }
+        catch (error) {
+            console.warn(`Warning: failed to refresh workspace context after isolating ${repoName}:`, error);
+        }
+        return {
+            repoName,
+            sourcePath,
+            worktreePath,
+            branchName,
+            baseBranch,
+            alreadyIsolated: false,
+        };
+    }
+    catch (error) {
+        if (worktreeCreated) {
+            try {
+                await removeWorktree(sourcePath, worktreePath, true);
+            }
+            catch { }
+            if (branchCreated) {
+                try {
+                    await execa('git', ['branch', '-D', branchName], { cwd: sourcePath });
+                }
+                catch { }
+            }
+        }
+        throw error;
+    }
+}
+//# sourceMappingURL=isolate.js.map

package/dist/core/isolate.js.map

@@ -0,0 +1 @@
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package/dist/core/isolate.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=isolate.test.d.ts.map

package/dist/core/isolate.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"isolate.test.d.ts","sourceRoot":"","sources":["../../src/core/isolate.test.ts"],"names":[],"mappings":""}

package/dist/core/isolate.test.js

@@ -0,0 +1,290 @@
+import * as fs from 'node:fs/promises';
+import * as path from 'node:path';
+import * as os from 'node:os';
+import { describe, expect, it, beforeEach, afterEach } from 'vitest';
+import { execa } from 'execa';
+import { isolateWorkspaceRepo } from './isolate.js';
+import { saveFeatureConfig, loadFeatureConfig, deleteWorkspace } from './workspace.js';
+import { resolveFeatureRepoPath, isRepoIsolated } from '../utils/feature.js';
+import { syncWorkspace } from './sync.js';
+import { runDoctor } from './doctor.js';
+async function initGitRepo(dir) {
+    await fs.mkdir(dir, { recursive: true });
+    await execa('git', ['init', '-b', 'main'], { cwd: dir });
+    await execa('git', ['config', 'user.name', 'Test User'], { cwd: dir });
+    await execa('git', ['config', 'user.email', 'test@example.com'], { cwd: dir });
+    await fs.writeFile(path.join(dir, 'README.md'), '# Test Repo\n', 'utf-8');
+    await execa('git', ['add', '.'], { cwd: dir });
+    await execa('git', ['commit', '-m', 'Initial commit'], { cwd: dir });
+}
+describe('isolateWorkspaceRepo & on-demand worktree isolation', { timeout: 30000 }, () => {
+    let tmpDir;
+    let repo1Dir;
+    let repo2Dir;
+    let workspaceDir;
+    beforeEach(async () => {
+        tmpDir = await fs.mkdtemp(path.join(os.tmpdir(), 'nf-isolate-test-'));
+        repo1Dir = path.join(tmpDir, 'repo1');
+        repo2Dir = path.join(tmpDir, 'repo2');
+        workspaceDir = path.join(tmpDir, 'workspace');
+        await initGitRepo(repo1Dir);
+        await initGitRepo(repo2Dir);
+        await fs.mkdir(workspaceDir, { recursive: true });
+    });
+    afterEach(async () => {
+        try {
+            await fs.rm(tmpDir, { recursive: true, force: true, maxRetries: 5 });
+        }
+        catch { }
+    });
+    it('throws when the workspace manifest does not exist', async () => {
+        await expect(isolateWorkspaceRepo(path.join(tmpDir, 'non-existent'), 'repo1')).rejects.toThrow('Workspace manifest not found');
+    });
+    it('throws when the target repo is not in the workspace', async () => {
+        const feature = {
+            id: 'test-ws',
+            mode: 'in-place',
+            branchName: 'test-ws',
+            description: 'test in-place',
+            repos: [repo1Dir],
+            originalRepos: [repo1Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        await expect(isolateWorkspaceRepo(workspaceDir, 'unknown-repo')).rejects.toThrow('is not part of workspace');
+    });
+    it('returns alreadyIsolated: true if workspace is already in worktree mode', async () => {
+        const feature = {
+            id: 'test-worktree-ws',
+            mode: 'worktree',
+            branchName: 'feat/all-repos',
+            description: 'test worktree mode',
+            repos: [path.join(workspaceDir, 'repo1')],
+            originalRepos: [repo1Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        const result = await isolateWorkspaceRepo(workspaceDir, 'repo1');
+        expect(result.alreadyIsolated).toBe(true);
+        expect(result.repoName).toBe('repo1');
+        expect(result.branchName).toBe('feat/all-repos');
+    });
+    it('dynamically isolates an in-place repo into a worktree on-demand', async () => {
+        const feature = {
+            id: 'my-feature',
+            mode: 'in-place',
+            branchName: 'my-feature',
+            description: 'In-place with lazy isolation',
+            repos: [repo1Dir, repo2Dir],
+            originalRepos: [repo1Dir, repo2Dir],
+            assistants: ['antigravity', 'claude'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        // Initial state: repos are NOT isolated
+        expect(isRepoIsolated(feature, 'repo1')).toBe(false);
+        expect(resolveFeatureRepoPath(feature, workspaceDir, repo1Dir)).toBe(repo1Dir);
+        // Isolate repo1
+        const result = await isolateWorkspaceRepo(workspaceDir, 'repo1', {
+            branchName: 'feat/repo1-custom',
+        });
+        expect(result.alreadyIsolated).toBe(false);
+        expect(result.repoName).toBe('repo1');
+        expect(result.branchName).toBe('feat/repo1-custom');
+        expect(result.worktreePath).toBe(path.join(workspaceDir, 'repo1'));
+        // Check that worktree directory exists on disk and is on the right branch
+        const { stdout: branchOut } = await execa('git', ['rev-parse', '--abbrev-ref', 'HEAD'], {
+            cwd: result.worktreePath,
+        });
+        expect(branchOut.trim()).toBe('feat/repo1-custom');
+        // Check manifest was updated
+        const updated = await loadFeatureConfig(workspaceDir);
+        expect(updated?.isolatedRepos?.['repo1']).toBeDefined();
+        expect(updated?.isolatedRepos?.['repo1']?.branchName).toBe('feat/repo1-custom');
+        expect(updated?.isolatedRepos?.['repo1']?.worktreePath).toBe(result.worktreePath);
+        // Check that resolveFeatureRepoPath now points to worktree for repo1, and source for repo2
+        expect(isRepoIsolated(updated, 'repo1')).toBe(true);
+        expect(isRepoIsolated(updated, 'repo2')).toBe(false);
+        expect(resolveFeatureRepoPath(updated, workspaceDir, repo1Dir)).toBe(result.worktreePath);
+        expect(resolveFeatureRepoPath(updated, workspaceDir, repo2Dir)).toBe(repo2Dir);
+        // Check .gitignore in workspace ignores /repo1/
+        const gitignoreContent = await fs.readFile(path.join(workspaceDir, '.gitignore'), 'utf-8');
+        expect(gitignoreContent).toContain('/repo1/');
+        // Calling isolate again on repo1 is idempotent
+        const rerun = await isolateWorkspaceRepo(workspaceDir, 'repo1');
+        expect(rerun.alreadyIsolated).toBe(true);
+        expect(rerun.branchName).toBe('feat/repo1-custom');
+    });
+    it('syncs isolated worktree repos while skipping non-isolated repos in in-place mode', async () => {
+        const remote1Dir = path.join(tmpDir, 'remote1.git');
+        const syncRepo1Dir = path.join(tmpDir, 'syncRepo1');
+        await fs.mkdir(remote1Dir, { recursive: true });
+        await execa('git', ['init', '--bare', '-b', 'main'], { cwd: remote1Dir });
+        await fs.mkdir(syncRepo1Dir, { recursive: true });
+        await execa('git', ['init', '-b', 'main'], { cwd: syncRepo1Dir });
+        await execa('git', ['config', 'user.name', 'Test User'], { cwd: syncRepo1Dir });
+        await execa('git', ['config', 'user.email', 'test@example.com'], { cwd: syncRepo1Dir });
+        await fs.writeFile(path.join(syncRepo1Dir, 'README.md'), '# Sync Repo\n', 'utf-8');
+        await execa('git', ['add', '.'], { cwd: syncRepo1Dir });
+        await execa('git', ['commit', '-m', 'Initial commit'], { cwd: syncRepo1Dir });
+        await execa('git', ['remote', 'add', 'origin', remote1Dir], { cwd: syncRepo1Dir });
+        await execa('git', ['push', '-u', 'origin', 'main'], { cwd: syncRepo1Dir });
+        const feature = {
+            id: 'sync-test',
+            mode: 'in-place',
+            branchName: 'sync-test',
+            description: 'In-place sync test',
+            repos: [syncRepo1Dir, repo2Dir],
+            originalRepos: [syncRepo1Dir, repo2Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        // Isolate syncRepo1
+        await isolateWorkspaceRepo(workspaceDir, 'syncRepo1', { branchName: 'feat/sync-repo1' });
+        // Commit and push a new change on origin main
+        await fs.writeFile(path.join(syncRepo1Dir, 'newfile.txt'), 'hello\n');
+        await execa('git', ['add', '.'], { cwd: syncRepo1Dir });
+        await execa('git', ['commit', '-m', 'Add newfile on main'], { cwd: syncRepo1Dir });
+        await execa('git', ['push', 'origin', 'main'], { cwd: syncRepo1Dir });
+        const syncReport = await syncWorkspace(workspaceDir);
+        expect(syncReport.repos).toHaveLength(2);
+        const repo1Sync = syncReport.repos.find((r) => r.name === 'syncRepo1');
+        const repo2Sync = syncReport.repos.find((r) => r.name === 'repo2');
+        expect(repo1Sync?.status).toBe('rebased');
+        expect(repo2Sync?.message).toContain('In-place repo — branches are managed by you');
+    });
+    it('cleans up isolated worktrees when deleting an in-place workspace', async () => {
+        const feature = {
+            id: 'cleanup-test',
+            mode: 'in-place',
+            branchName: 'cleanup-test',
+            description: 'In-place cleanup test',
+            repos: [repo1Dir],
+            originalRepos: [repo1Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        await isolateWorkspaceRepo(workspaceDir, 'repo1');
+        const worktreeDir = path.join(workspaceDir, 'repo1');
+        expect(await fs.stat(worktreeDir)).toBeDefined();
+        await deleteWorkspace(workspaceDir);
+        // Workspace directory removed
+        await expect(fs.access(workspaceDir)).rejects.toThrow();
+        // Source repo intact
+        expect(await fs.stat(repo1Dir)).toBeDefined();
+        // Worktree list in source repo is clean
+        const { stdout: wtList } = await execa('git', ['worktree', 'list'], { cwd: repo1Dir });
+        expect(wtList).not.toContain(worktreeDir);
+    });
+    it('rejects invalid or option-injected branch names', async () => {
+        const feature = {
+            id: 'sec-test',
+            mode: 'in-place',
+            branchName: 'sec-test',
+            description: 'Security validation test',
+            repos: [repo1Dir],
+            originalRepos: [repo1Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        await expect(isolateWorkspaceRepo(workspaceDir, 'repo1', { branchName: '--lock' })).rejects.toThrow('Invalid branch name');
+        await expect(isolateWorkspaceRepo(workspaceDir, 'repo1', { branchName: '-f' })).rejects.toThrow('Invalid branch name');
+        await expect(isolateWorkspaceRepo(workspaceDir, 'repo1', { branchName: 'invalid branch with spaces' })).rejects.toThrow('Invalid branch name');
+    });
+    it('recovers and recreates worktree if directory is deleted from disk', async () => {
+        const feature = {
+            id: 'recover-test',
+            mode: 'in-place',
+            branchName: 'recover-test',
+            description: 'Recovery test',
+            repos: [repo1Dir],
+            originalRepos: [repo1Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        // Initial isolation
+        const res1 = await isolateWorkspaceRepo(workspaceDir, 'repo1', { branchName: 'feat/rec-1' });
+        expect(res1.alreadyIsolated).toBe(false);
+        // Simulate accidental deletion of worktree folder from disk
+        await fs.rm(res1.worktreePath, { recursive: true, force: true });
+        // Calling isolate again should prune stale git registration and recreate cleanly
+        const res2 = await isolateWorkspaceRepo(workspaceDir, 'repo1', { branchName: 'feat/rec-1' });
+        expect(res2.worktreePath).toBe(res1.worktreePath);
+        expect(await fs.stat(res2.worktreePath)).toBeDefined();
+    });
+    it('handles case-insensitive repository lookups on Windows', async () => {
+        const feature = {
+            id: 'case-test',
+            mode: 'in-place',
+            branchName: 'case-test',
+            description: 'Case sensitivity test',
+            repos: [repo1Dir],
+            originalRepos: [repo1Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        // Pass uppercase repo name 'REPO1'
+        const result = await isolateWorkspaceRepo(workspaceDir, 'REPO1', { branchName: 'feat/case-test' });
+        expect(result.repoName).toBe('repo1');
+        expect(result.branchName).toBe('feat/case-test');
+    });
+    it('handles concurrent isolation operations without manifest clobbering', async () => {
+        const feature = {
+            id: 'concurrency-test',
+            mode: 'in-place',
+            branchName: 'concurrency-test',
+            description: 'Concurrency test',
+            repos: [repo1Dir, repo2Dir],
+            originalRepos: [repo1Dir, repo2Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        // Isolate repo1 and repo2 concurrently
+        const [res1, res2] = await Promise.all([
+            isolateWorkspaceRepo(workspaceDir, 'repo1', { branchName: 'feat/concurrent-1' }),
+            isolateWorkspaceRepo(workspaceDir, 'repo2', { branchName: 'feat/concurrent-2' }),
+        ]);
+        expect(res1.repoName).toBe('repo1');
+        expect(res2.repoName).toBe('repo2');
+        const updated = await loadFeatureConfig(workspaceDir);
+        expect(updated?.isolatedRepos?.['repo1']).toBeDefined();
+        expect(updated?.isolatedRepos?.['repo2']).toBeDefined();
+    });
+    it('doctor passes cleanly on isolated in-place workspace without false branch mismatch warnings', async () => {
+        const feature = {
+            id: 'doc-test',
+            mode: 'in-place',
+            branchName: 'doc-test',
+            description: 'Doctor test',
+            repos: [repo1Dir],
+            originalRepos: [repo1Dir],
+            assistants: ['antigravity'],
+            workspacePath: workspaceDir,
+            createdAt: new Date().toISOString(),
+        };
+        await saveFeatureConfig(workspaceDir, feature);
+        await isolateWorkspaceRepo(workspaceDir, 'repo1', { branchName: 'feat/doc-isolated' });
+        const report = await runDoctor(workspaceDir);
+        const branchCheck = report.checks.find((c) => c.category === 'Branch Alignment & Git Status');
+        expect(branchCheck?.status).toBe('pass');
+        expect(report.errors).toHaveLength(0);
+    });
+});
+//# sourceMappingURL=isolate.test.js.map

package/dist/core/isolate.test.js.map

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package/dist/core/refresh.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"refresh.d.ts","sourceRoot":"","sources":["../../src/core/refresh.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAUH,0CAA0C;AAC1C,MAAM,WAAW,cAAc;IAC7B,2DAA2D;IAC3D,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAED,yCAAyC;AACzC,MAAM,WAAW,aAAa;IAC5B,sCAAsC;IACtC,aAAa,EAAE,MAAM,CAAC;IACtB,0EAA0E;IAC1E,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,uDAAuD;IACvD,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,oDAAoD;IACpD,gBAAgB,EAAE,OAAO,CAAC;CAC3B;AAED;;;;;;;;;;;;GAYG;AACH,wBAAsB,gBAAgB,CACpC,aAAa,EAAE,MAAM,EACrB,OAAO,GAAE,cAAmB,GAC3B,OAAO,CAAC,aAAa,CAAC,CAyCxB"}
+{"version":3,"file":"refresh.d.ts","sourceRoot":"","sources":["../../src/core/refresh.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAWH,0CAA0C;AAC1C,MAAM,WAAW,cAAc;IAC7B,2DAA2D;IAC3D,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAED,yCAAyC;AACzC,MAAM,WAAW,aAAa;IAC5B,sCAAsC;IACtC,aAAa,EAAE,MAAM,CAAC;IACtB,0EAA0E;IAC1E,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,uDAAuD;IACvD,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,oDAAoD;IACpD,gBAAgB,EAAE,OAAO,CAAC;CAC3B;AAED;;;;;;;;;;;;GAYG;AACH,wBAAsB,gBAAgB,CACpC,aAAa,EAAE,MAAM,EACrB,OAAO,GAAE,cAAmB,GAC3B,OAAO,CAAC,aAAa,CAAC,CA4ExB"}

package/dist/core/refresh.js

@@ -10,6 +10,7 @@
 import * as fs from 'node:fs/promises';
 import * as path from 'node:path';
 import { loadFeatureConfig, resolveRepoInfos } from './workspace.js';
+import { resolveFeatureRepoPath } from '../utils/feature.js';
 import { analyzeAllReposCached } from '../analyzers/index.js';
 import { generateContextFiles } from '../generators/index.js';
 /**
@@ -30,10 +31,43 @@ export async function refreshWorkspace(workspacePath, options = {}) {
     if (!feature) {
         throw new Error(`Failed to load workspace configuration. Ensure nexusflow.json exists at ${workspacePath}.`);
     }
-    const allRepos = await resolveRepoInfos(feature.repos);
+    const resolvedPaths = feature.repos.map((r) => resolveFeatureRepoPath(feature, workspacePath, r));
+    const allRepos = await resolveRepoInfos(resolvedPaths);
     const { analysis, analyzed, reused } = await analyzeAllReposCached(allRepos, workspacePath, { force: options.force });
     const ctx = { feature, repos: allRepos, analysis };
     await generateContextFiles(ctx, feature.assistants, workspacePath);
+    // Ensure .code-workspace and .vscode/settings.json exist and stay updated
+    try {
+        const workspaceName = path.basename(workspacePath);
+        const codeWorkspacePath = path.join(workspacePath, `${workspaceName}.code-workspace`);
+        const inPlace = feature.mode === 'in-place';
+        const codeWorkspace = {
+            folders: [
+                { path: '.', name: `${workspaceName} (workspace)` },
+                ...allRepos.map((repo) => {
+                    const isIsolated = Boolean(feature.isolatedRepos?.[repo.name] ?? feature.isolatedRepos?.[repo.path]);
+                    return {
+                        path: inPlace && !isIsolated ? repo.path : repo.name,
+                        name: repo.name,
+                    };
+                }),
+            ],
+            settings: { 'search.useIgnoreFiles': false },
+        };
+        await fs.writeFile(codeWorkspacePath, JSON.stringify(codeWorkspace, null, 2) + '\n', 'utf-8');
+        const vscodeDir = path.join(workspacePath, '.vscode');
+        const settingsPath = path.join(vscodeDir, 'settings.json');
+        try {
+            await fs.access(settingsPath);
+        }
+        catch {
+            await fs.mkdir(vscodeDir, { recursive: true });
+            await fs.writeFile(settingsPath, JSON.stringify({ 'search.useIgnoreFiles': false }, null, 2) + '\n', 'utf-8');
+        }
+    }
+    catch (err) {
+        console.warn('Warning: Failed to ensure .code-workspace or .vscode/settings.json during refresh:', err);
+    }
     // If a handoff bundle exists, refresh it too — it reuses the cached
     // analysis, so this no longer triggers a second full analysis pass.
     let refreshedHandoff = false;

package/dist/core/refresh.js.map

@@ -1 +1 @@
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package/dist/core/sync.d.ts.map

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