@mrpatronz/nexusflow 1.9.1 → 2.1.1

package/dist/commands/refresh.d.ts

@@ -1,14 +1,12 @@
 /**
  * Runs the refresh command.
- * Updates context files, maps, and plans — re-analyzing only repos whose
+ * Regenerates the workspace context files — re-analyzing only repos whose
  * content changed since the last run (use --force to re-analyze everything).
  *
- * @param options - CLI options, e.g. { repo: 'API_CoworkerFacade', force: true, strategy: 'solo-developer' }.
+ * @param options - CLI options, e.g. { force: true, strategy: 'solo-developer' }.
  * @param workspaceArg - Optional workspace path.
  */
 export declare function refreshCommand(options: {
-    repo?: string;
-    base?: boolean;
     force?: boolean;
     strategy?: string;
 }, workspaceArg?: string): Promise<void>;

package/dist/commands/refresh.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"refresh.d.ts","sourceRoot":"","sources":["../../src/commands/refresh.ts"],"names":[],"mappings":"AAWA;;;;;;;GAOG;AACH,wBAAsB,cAAc,CAClC,OAAO,EAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,OAAO,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAE,EAC9E,YAAY,CAAC,EAAE,MAAM,GACpB,OAAO,CAAC,IAAI,CAAC,CAgFf"}
+{"version":3,"file":"refresh.d.ts","sourceRoot":"","sources":["../../src/commands/refresh.ts"],"names":[],"mappings":"AAWA;;;;;;;GAOG;AACH,wBAAsB,cAAc,CAClC,OAAO,EAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAE,EAC/C,YAAY,CAAC,EAAE,MAAM,GACpB,OAAO,CAAC,IAAI,CAAC,CAiEf"}

package/dist/commands/refresh.js

@@ -9,10 +9,10 @@ import { getWorkflowTemplates } from '../utils/workflows.js';
 import { suggestWorkflow } from '../utils/workflow-advisor.js';
 /**
  * Runs the refresh command.
- * Updates context files, maps, and plans — re-analyzing only repos whose
+ * Regenerates the workspace context files — re-analyzing only repos whose
  * content changed since the last run (use --force to re-analyze everything).
  *
- * @param options - CLI options, e.g. { repo: 'API_CoworkerFacade', force: true, strategy: 'solo-developer' }.
+ * @param options - CLI options, e.g. { force: true, strategy: 'solo-developer' }.
  * @param workspaceArg - Optional workspace path.
  */
 export async function refreshCommand(options, workspaceArg) {
@@ -56,29 +56,13 @@ export async function refreshCommand(options, workspaceArg) {
         // Persist the updated feature config
         await saveFeatureConfig(workspacePath, feature);
     }
-    const onlyRepo = options.repo;
-    if (onlyRepo) {
-        const hasRepo = feature.repos.some(r => path.basename(r) === onlyRepo);
-        if (!hasRepo) {
-            console.error(chalk.red(`✖ Repository "${onlyRepo}" is not part of this workspace.`));
-            console.log(chalk.dim(`  Available repos: ${feature.repos.map(r => path.basename(r)).join(', ')}`));
-            return;
-        }
-        console.log(`Refreshing context for repository: ${chalk.bold(onlyRepo)}`);
-    }
-    else {
-        console.log('Refreshing context for all repositories...');
-    }
+    console.log('Refreshing context for all repositories...');
     if (options.force) {
         console.log(chalk.dim('Force mode: ignoring analysis cache.'));
     }
     let report;
     try {
-        report = await refreshWorkspace(workspacePath, {
-            onlyRepo,
-            baseOnly: options.base,
-            force: options.force,
-        });
+        report = await refreshWorkspace(workspacePath, { force: options.force });
     }
     catch (error) {
         console.error(chalk.red(`✖ Failed to refresh: ${error instanceof Error ? error.message : String(error)}`));

package/dist/commands/refresh.js.map

@@ -1 +1 @@
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package/dist/core/adapters/registry.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"registry.d.ts","sourceRoot":"","sources":["../../../src/core/adapters/registry.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAO3E,wBAAgB,uBAAuB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,WAAW,QAE1E;AAMD,6DAA6D;AAC7D,wBAAgB,oBAAoB,IAAI,kBAAkB,EAAE,CAE3D;AAED,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,WAAW,CAM5D;AAED,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,WAAW,QAE7D;AAED,wBAAgB,wBAAwB,IAAI,WAAW,CAStD"}
+{"version":3,"file":"registry.d.ts","sourceRoot":"","sources":["../../../src/core/adapters/registry.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAM3E,wBAAgB,uBAAuB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,WAAW,QAE1E;AAYD,6DAA6D;AAC7D,wBAAgB,oBAAoB,IAAI,kBAAkB,EAAE,CAE3D;AAED,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,WAAW,CAM5D;AAED,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,WAAW,QAE7D;AAED,wBAAgB,wBAAwB,IAAI,WAAW,CAStD"}

package/dist/core/adapters/registry.js

@@ -1,13 +1,18 @@
 import { LocalStorageAdapter } from './local-storage.js';
-import { CentralVaultAdapter } from './vault-storage.js';
 const storageProviders = new Map();
 let activeProvider = null;
 export function registerStorageProvider(name, provider) {
     storageProviders.set(name, provider);
 }
-// Auto-register built-in adapters
+// Auto-register built-in adapters.
+//
+// Only one, deliberately. The port stays because it keeps every writer going
+// through one place, which is what lets a plugin add a backend — but a backend
+// that moves the generated files out of the workspace cannot work: Claude Code
+// reads CLAUDE.md from the workspace root, `@AGENTS.md` resolves relative to it,
+// and Codex, Cursor and Devin read AGENTS.md from the root too. The removed
+// central-vault adapter wrote all of them to ~/.nexusflow/vault/ instead.
 registerStorageProvider('local', new LocalStorageAdapter());
-registerStorageProvider('central-vault', new CentralVaultAdapter());
 /** Returns metadata for all registered storage providers. */
 export function listStorageProviders() {
     return Array.from(storageProviders.values()).map(p => p.meta);

package/dist/core/adapters/registry.js.map

@@ -1 +1 @@
-{"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../src/core/adapters/registry.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AACzD,OAAO,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AAEzD,MAAM,gBAAgB,GAAG,IAAI,GAAG,EAAuB,CAAC;AACxD,IAAI,cAAc,GAAuB,IAAI,CAAC;AAE9C,MAAM,UAAU,uBAAuB,CAAC,IAAY,EAAE,QAAqB;IACzE,gBAAgB,CAAC,GAAG,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;AACvC,CAAC;AAED,kCAAkC;AAClC,uBAAuB,CAAC,OAAO,EAAE,IAAI,mBAAmB,EAAE,CAAC,CAAC;AAC5D,uBAAuB,CAAC,eAAe,EAAE,IAAI,mBAAmB,EAAE,CAAC,CAAC;AAEpE,6DAA6D;AAC7D,MAAM,UAAU,oBAAoB;IAClC,OAAO,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;AAChE,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,IAAY;IAC7C,MAAM,QAAQ,GAAG,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,qBAAqB,IAAI,sBAAsB,CAAC,CAAC;IACnE,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,QAAqB;IAC5D,cAAc,GAAG,QAAQ,CAAC;AAC5B,CAAC;AAED,MAAM,UAAU,wBAAwB;IACtC,IAAI,CAAC,cAAc,EAAE,CAAC;QACpB,MAAM,KAAK,GAAG,gBAAgB,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAC5C,IAAI,CAAC,KAAK,EAAE,CAAC;YACX,MAAM,IAAI,KAAK,CAAC,kCAAkC,CAAC,CAAC;QACtD,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC;IACD,OAAO,cAAc,CAAC;AACxB,CAAC"}
+{"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../src/core/adapters/registry.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AAEzD,MAAM,gBAAgB,GAAG,IAAI,GAAG,EAAuB,CAAC;AACxD,IAAI,cAAc,GAAuB,IAAI,CAAC;AAE9C,MAAM,UAAU,uBAAuB,CAAC,IAAY,EAAE,QAAqB;IACzE,gBAAgB,CAAC,GAAG,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;AACvC,CAAC;AAED,mCAAmC;AACnC,EAAE;AACF,6EAA6E;AAC7E,+EAA+E;AAC/E,+EAA+E;AAC/E,iFAAiF;AACjF,4EAA4E;AAC5E,0EAA0E;AAC1E,uBAAuB,CAAC,OAAO,EAAE,IAAI,mBAAmB,EAAE,CAAC,CAAC;AAE5D,6DAA6D;AAC7D,MAAM,UAAU,oBAAoB;IAClC,OAAO,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;AAChE,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,IAAY;IAC7C,MAAM,QAAQ,GAAG,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,qBAAqB,IAAI,sBAAsB,CAAC,CAAC;IACnE,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,QAAqB;IAC5D,cAAc,GAAG,QAAQ,CAAC;AAC5B,CAAC;AAED,MAAM,UAAU,wBAAwB;IACtC,IAAI,CAAC,cAAc,EAAE,CAAC;QACpB,MAAM,KAAK,GAAG,gBAAgB,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAC5C,IAAI,CAAC,KAAK,EAAE,CAAC;YACX,MAAM,IAAI,KAAK,CAAC,kCAAkC,CAAC,CAAC;QACtD,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC;IACD,OAAO,cAAc,CAAC;AACxB,CAAC"}

package/dist/core/adapters/storage.test.js

@@ -3,7 +3,6 @@ import * as fs from 'node:fs/promises';
 import * as os from 'node:os';
 import * as path from 'node:path';
 import { LocalStorageAdapter } from './local-storage.js';
-import { CentralVaultAdapter } from './vault-storage.js';
 vi.mock('node:fs/promises');
 vi.mock('node:os', async () => {
     const actual = await vi.importActual('node:os');
@@ -57,28 +56,10 @@ describe('Storage Adapters', () => {
             expect(a).not.toBe(b);
         });
     });
-    describe('CentralVaultAdapter', () => {
-        const adapter = new CentralVaultAdapter();
-        it('should declare correct meta', () => {
-            expect(adapter.meta.name).toBe('central-vault');
-        });
-        it('should write workspace files to ~/.nexusflow/vault/<featureId>', async () => {
-            vi.mocked(fs.mkdir).mockResolvedValue(undefined);
-            vi.mocked(fs.writeFile).mockResolvedValue(undefined);
-            await adapter.writeWorkspaceFile('/ws/path', 'feature-1', 'test.txt', 'hello');
-            expect(fs.writeFile).toHaveBeenCalledWith(expect.stringContaining(path.normalize('.nexusflow/vault/feature-1/test.txt')), 'hello', 'utf8');
-        });
-        it('should write base files to ~/.nexusflow/vault/_base/<repoName>', async () => {
-            vi.mocked(fs.mkdir).mockResolvedValue(undefined);
-            vi.mocked(fs.writeFile).mockResolvedValue(undefined);
-            await adapter.writeBaseFile('/ws/path', 'RepoName', 'map.md', 'content');
-            expect(fs.writeFile).toHaveBeenCalledWith(expect.stringContaining(path.normalize('.nexusflow/vault/_base/RepoName/map.md')), 'content', 'utf8');
-        });
-        it('should delete workspace folder from ~/.nexusflow/vault', async () => {
-            vi.mocked(fs.rm).mockResolvedValue(undefined);
-            await adapter.deleteWorkspace('/ws/path', 'feature-1');
-            expect(fs.rm).toHaveBeenCalledWith(expect.stringContaining(path.normalize('.nexusflow/vault/feature-1')), { recursive: true, force: true });
-        });
-    });
+    // CentralVaultAdapter is gone. It relocated every workspace file to
+    // ~/.nexusflow/vault/<featureId>, but assistants read AGENTS.md and CLAUDE.md
+    // from the workspace root and nowhere else, so the files it wrote were where
+    // nothing would look for them. It also ignored the vaultPath users configured:
+    // no configure() method, empty configFields, and a hardcoded path.
 });
 //# sourceMappingURL=storage.test.js.map

package/dist/core/adapters/storage.test.js.map

@@ -1 +1 @@
-{"version":3,"file":"storage.test.js","sourceRoot":"","sources":["../../../src/core/adapters/storage.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,UAAU,EAAE,MAAM,QAAQ,CAAC;AAC9D,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,EAAE,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAElC,OAAO,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AACzD,OAAO,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AAEzD,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC;AAC5B,EAAE,CAAC,IAAI,CAAC,SAAS,EAAE,KAAK,IAAI,EAAE;IAC5B,MAAM,MAAM,GAAG,MAAM,EAAE,CAAC,YAAY,CAA2B,SAAS,CAAC,CAAC;IAC1E,OAAO;QACL,GAAG,MAAM;QACT,OAAO,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,YAAY,CAAC;KAC/C,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,QAAQ,CAAC,kBAAkB,EAAE,GAAG,EAAE;IAChC,UAAU,CAAC,GAAG,EAAE;QACd,EAAE,CAAC,aAAa,EAAE,CAAC;QACnB,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,eAAe,CAAC,YAAY,CAAC,CAAC;IACtD,CAAC,CAAC,CAAC;IAEH,QAAQ,CAAC,qBAAqB,EAAE,GAAG,EAAE;QACnC,MAAM,OAAO,GAAG,IAAI,mBAAmB,EAAE,CAAC;QAE1C,EAAE,CAAC,6BAA6B,EAAE,GAAG,EAAE;YACrC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YACxC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACnD,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,6DAA6D,EAAE,KAAK,IAAI,EAAE;YAC3E,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YACjD,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YAErD,MAAM,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,WAAW,EAAE,UAAU,EAAE,OAAO,CAAC,CAAC;YAE/E,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,oBAAoB,CAAC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;YAChH,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,oBAAoB,CACvC,IAAI,CAAC,SAAS,CAAC,mBAAmB,CAAC,EACnC,OAAO,EACP,MAAM,CACP,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,sCAAsC,EAAE,GAAG,EAAE;YAC9C,MAAM,QAAQ,GAAG,OAAO,CAAC,uBAAuB,CAAC,UAAU,EAAE,WAAW,EAAE,UAAU,CAAC,CAAC;YACtF,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,mBAAmB,CAAC,CAAC;QAClD,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,gCAAgC,EAAE,KAAK,IAAI,EAAE;YAC9C,MAAM,OAAO,CAAC,eAAe,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;YACvD,MAAM,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,gBAAgB,EAAE,CAAC;QACvC,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,wDAAwD,EAAE,KAAK,IAAI,EAAE;YACtE,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YACjD,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YAErD,MAAM,OAAO,CAAC,aAAa,CAAC,UAAU,EAAE,UAAU,EAAE,wBAAwB,EAAE,MAAM,CAAC,CAAC;YAEtF,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,oBAAoB,CACvC,IAAI,CAAC,SAAS,CAAC,0DAA0D,CAAC,EAC1E,MAAM,EACN,MAAM,CACP,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,0EAA0E,EAAE,GAAG,EAAE;YAClF,MAAM,KAAK,GAAG,OAAO,CAAC,uBAAuB,CAAC,UAAU,EAAE,WAAW,EAAE,wBAAwB,CAAC,CAAC;YACjG,MAAM,OAAO,GAAG,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,UAAU,EAAE,wBAAwB,CAAC,CAAC;YAC7F,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAChC,MAAM,CAAC,KAAK,CAAC,CAAC,SAAS,CAAC,iCAAiC,CAAC,CAAC;YAC3D,MAAM,CAAC,OAAO,CAAC,CAAC,SAAS,CAAC,0DAA0D,CAAC,CAAC;QACxF,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,oDAAoD,EAAE,GAAG,EAAE;YAC5D,MAAM,CAAC,GAAG,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,OAAO,EAAE,wBAAwB,CAAC,CAAC;YACpF,MAAM,CAAC,GAAG,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,OAAO,EAAE,wBAAwB,CAAC,CAAC;YACpF,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACxB,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IAEH,QAAQ,CAAC,qBAAqB,EAAE,GAAG,EAAE;QACnC,MAAM,OAAO,GAAG,IAAI,mBAAmB,EAAE,CAAC;QAE1C,EAAE,CAAC,6BAA6B,EAAE,GAAG,EAAE;YACrC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC;QAClD,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,gEAAgE,EAAE,KAAK,IAAI,EAAE;YAC9E,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YACjD,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YAErD,MAAM,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,WAAW,EAAE,UAAU,EAAE,OAAO,CAAC,CAAC;YAE/E,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,oBAAoB,CACvC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,SAAS,CAAC,qCAAqC,CAAC,CAAC,EAC9E,OAAO,EACP,MAAM,CACP,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,gEAAgE,EAAE,KAAK,IAAI,EAAE;YAC9E,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YACjD,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YAErD,MAAM,OAAO,CAAC,aAAa,CAAC,UAAU,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAC;YAEzE,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,oBAAoB,CACvC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,SAAS,CAAC,wCAAwC,CAAC,CAAC,EACjF,SAAS,EACT,MAAM,CACP,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,wDAAwD,EAAE,KAAK,IAAI,EAAE;YACtE,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YAC9C,MAAM,OAAO,CAAC,eAAe,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;YACvD,MAAM,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,oBAAoB,CAChC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,SAAS,CAAC,4BAA4B,CAAC,CAAC,EACrE,EAAE,SAAS,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CACjC,CAAC;QACJ,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;AAEL,CAAC,CAAC,CAAC"}
+{"version":3,"file":"storage.test.js","sourceRoot":"","sources":["../../../src/core/adapters/storage.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,UAAU,EAAE,MAAM,QAAQ,CAAC;AAC9D,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,EAAE,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAElC,OAAO,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AAEzD,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC;AAC5B,EAAE,CAAC,IAAI,CAAC,SAAS,EAAE,KAAK,IAAI,EAAE;IAC5B,MAAM,MAAM,GAAG,MAAM,EAAE,CAAC,YAAY,CAA2B,SAAS,CAAC,CAAC;IAC1E,OAAO;QACL,GAAG,MAAM;QACT,OAAO,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,YAAY,CAAC;KAC/C,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,QAAQ,CAAC,kBAAkB,EAAE,GAAG,EAAE;IAChC,UAAU,CAAC,GAAG,EAAE;QACd,EAAE,CAAC,aAAa,EAAE,CAAC;QACnB,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,eAAe,CAAC,YAAY,CAAC,CAAC;IACtD,CAAC,CAAC,CAAC;IAEH,QAAQ,CAAC,qBAAqB,EAAE,GAAG,EAAE;QACnC,MAAM,OAAO,GAAG,IAAI,mBAAmB,EAAE,CAAC;QAE1C,EAAE,CAAC,6BAA6B,EAAE,GAAG,EAAE;YACrC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YACxC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACnD,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,6DAA6D,EAAE,KAAK,IAAI,EAAE;YAC3E,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YACjD,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YAErD,MAAM,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,WAAW,EAAE,UAAU,EAAE,OAAO,CAAC,CAAC;YAE/E,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,oBAAoB,CAAC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;YAChH,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,oBAAoB,CACvC,IAAI,CAAC,SAAS,CAAC,mBAAmB,CAAC,EACnC,OAAO,EACP,MAAM,CACP,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,sCAAsC,EAAE,GAAG,EAAE;YAC9C,MAAM,QAAQ,GAAG,OAAO,CAAC,uBAAuB,CAAC,UAAU,EAAE,WAAW,EAAE,UAAU,CAAC,CAAC;YACtF,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,mBAAmB,CAAC,CAAC;QAClD,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,gCAAgC,EAAE,KAAK,IAAI,EAAE;YAC9C,MAAM,OAAO,CAAC,eAAe,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;YACvD,MAAM,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,gBAAgB,EAAE,CAAC;QACvC,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,wDAAwD,EAAE,KAAK,IAAI,EAAE;YACtE,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YACjD,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,iBAAiB,CAAC,SAAS,CAAC,CAAC;YAErD,MAAM,OAAO,CAAC,aAAa,CAAC,UAAU,EAAE,UAAU,EAAE,wBAAwB,EAAE,MAAM,CAAC,CAAC;YAEtF,MAAM,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,oBAAoB,CACvC,IAAI,CAAC,SAAS,CAAC,0DAA0D,CAAC,EAC1E,MAAM,EACN,MAAM,CACP,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,0EAA0E,EAAE,GAAG,EAAE;YAClF,MAAM,KAAK,GAAG,OAAO,CAAC,uBAAuB,CAAC,UAAU,EAAE,WAAW,EAAE,wBAAwB,CAAC,CAAC;YACjG,MAAM,OAAO,GAAG,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,UAAU,EAAE,wBAAwB,CAAC,CAAC;YAC7F,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAChC,MAAM,CAAC,KAAK,CAAC,CAAC,SAAS,CAAC,iCAAiC,CAAC,CAAC;YAC3D,MAAM,CAAC,OAAO,CAAC,CAAC,SAAS,CAAC,0DAA0D,CAAC,CAAC;QACxF,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,oDAAoD,EAAE,GAAG,EAAE;YAC5D,MAAM,CAAC,GAAG,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,OAAO,EAAE,wBAAwB,CAAC,CAAC;YACpF,MAAM,CAAC,GAAG,OAAO,CAAC,kBAAkB,CAAC,UAAU,EAAE,OAAO,EAAE,wBAAwB,CAAC,CAAC;YACpF,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACxB,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IAEH,oEAAoE;IACpE,8EAA8E;IAC9E,6EAA6E;IAC7E,+EAA+E;IAC/E,mEAAmE;AAErE,CAAC,CAAC,CAAC"}

package/dist/core/analysis-cache.d.ts

@@ -1,10 +1,10 @@
 /**
  * @module core/analysis-cache
- * Persists per-repo analysis results in `.nexusflow-analysis-cache.json` at
- * the workspace root, keyed by a git content fingerprint (HEAD SHA plus a
- * signature of dirty files). Lets refresh/sync re-analyze only repos whose
- * content actually changed, keeping unchanged maps byte-identical — which
- * avoids file churn and preserves AI assistants' prompt caches (token saving).
+ * Persists per-repo analysis results in `.nexusflow-analysis-cache.json` at the
+ * workspace root, keyed by this package's version plus a git content fingerprint
+ * (HEAD SHA plus a signature of dirty files). Lets refresh/sync re-analyze only
+ * repos whose content actually changed, while still re-running everything after
+ * an upgrade so the generators never read stale analysis.
  */
 import type { ProjectAnalysis } from '../types.js';
 /** A cached analysis result for a single repo. */
@@ -46,11 +46,18 @@ export declare function loadAnalysisCache(workspacePath: string): Promise<Analys
  */
 export declare function saveAnalysisCache(workspacePath: string, cache: AnalysisCache, currentRepoNames?: string[]): Promise<void>;
 /**
- * Computes a content fingerprint for a repo: the HEAD commit SHA, extended
- * with a hash of the dirty working-tree files (status line + size + mtime per
- * file) when the tree is not clean. Editing, adding, or deleting an
+ * Computes a content fingerprint for a repo: this package's version, the HEAD
+ * commit SHA, and a hash of the dirty working-tree files (status line + size +
+ * mtime per file) when the tree is not clean. Editing, adding, or deleting an
  * uncommitted file therefore changes the fingerprint too.
  *
+ * The version is part of the key so that upgrading NexusFlow re-runs the
+ * analysis the generators read from. Keyed on repo content alone, an upgrade that
+ * improved them reached no existing workspace until someone happened to run
+ * `refresh --force`. Including the version costs one local re-analysis per
+ * upgrade — file IO, no tokens — and makes stale context impossible to serve by
+ * default.
+ *
  * @param repoPath - Absolute path to the repo root.
  * @returns The fingerprint, or null when git fails (caller should re-analyze).
  */

package/dist/core/analysis-cache.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"analysis-cache.d.ts","sourceRoot":"","sources":["../../src/core/analysis-cache.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAOH,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAKnD,kDAAkD;AAClD,MAAM,WAAW,kBAAkB;IACjC,kCAAkC;IAClC,QAAQ,EAAE,MAAM,CAAC;IACjB,6DAA6D;IAC7D,WAAW,EAAE,MAAM,CAAC;IACpB,8CAA8C;IAC9C,UAAU,EAAE,MAAM,CAAC;IACnB,kCAAkC;IAClC,QAAQ,EAAE,eAAe,CAAC;CAC3B;AAED,2CAA2C;AAC3C,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,CAAC,CAAC;IACX,kCAAkC;IAClC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC;CAC3C;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,aAAa,EAAE,MAAM,GAAG,MAAM,CAElE;AAED;;;;;GAKG;AACH,wBAAsB,iBAAiB,CACrC,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,aAAa,CAAC,CAWxB;AAED;;;;;;;;GAQG;AACH,wBAAsB,iBAAiB,CACrC,aAAa,EAAE,MAAM,EACrB,KAAK,EAAE,aAAa,EACpB,gBAAgB,CAAC,EAAE,MAAM,EAAE,GAC1B,OAAO,CAAC,IAAI,CAAC,CAUf;AAaD;;;;;;;;GAQG;AACH,wBAAsB,kBAAkB,CACtC,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAqCxB"}
+{"version":3,"file":"analysis-cache.d.ts","sourceRoot":"","sources":["../../src/core/analysis-cache.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AASH,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAkDnD,kDAAkD;AAClD,MAAM,WAAW,kBAAkB;IACjC,kCAAkC;IAClC,QAAQ,EAAE,MAAM,CAAC;IACjB,6DAA6D;IAC7D,WAAW,EAAE,MAAM,CAAC;IACpB,8CAA8C;IAC9C,UAAU,EAAE,MAAM,CAAC;IACnB,kCAAkC;IAClC,QAAQ,EAAE,eAAe,CAAC;CAC3B;AAED,2CAA2C;AAC3C,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,CAAC,CAAC;IACX,kCAAkC;IAClC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC;CAC3C;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,aAAa,EAAE,MAAM,GAAG,MAAM,CAElE;AAED;;;;;GAKG;AACH,wBAAsB,iBAAiB,CACrC,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,aAAa,CAAC,CAWxB;AAED;;;;;;;;GAQG;AACH,wBAAsB,iBAAiB,CACrC,aAAa,EAAE,MAAM,EACrB,KAAK,EAAE,aAAa,EACpB,gBAAgB,CAAC,EAAE,MAAM,EAAE,GAC1B,OAAO,CAAC,IAAI,CAAC,CAUf;AAaD;;;;;;;;;;;;;;;GAeG;AACH,wBAAsB,kBAAkB,CACtC,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAuCxB"}

package/dist/core/analysis-cache.js

@@ -1,17 +1,60 @@
 /**
  * @module core/analysis-cache
- * Persists per-repo analysis results in `.nexusflow-analysis-cache.json` at
- * the workspace root, keyed by a git content fingerprint (HEAD SHA plus a
- * signature of dirty files). Lets refresh/sync re-analyze only repos whose
- * content actually changed, keeping unchanged maps byte-identical — which
- * avoids file churn and preserves AI assistants' prompt caches (token saving).
+ * Persists per-repo analysis results in `.nexusflow-analysis-cache.json` at the
+ * workspace root, keyed by this package's version plus a git content fingerprint
+ * (HEAD SHA plus a signature of dirty files). Lets refresh/sync re-analyze only
+ * repos whose content actually changed, while still re-running everything after
+ * an upgrade so the generators never read stale analysis.
  */
 import { createHash } from 'node:crypto';
+import { existsSync, readFileSync } from 'node:fs';
 import * as fs from 'node:fs/promises';
 import * as path from 'node:path';
+import { fileURLToPath } from 'node:url';
 import { execa } from 'execa';
 /** Name of the analysis cache file, written at the workspace root. */
 const CACHE_FILE = '.nexusflow-analysis-cache.json';
+/** Memoised own version; resolved once per process. */
+let generatorVersion;
+/**
+ * This package's version, used as part of every repo fingerprint.
+ *
+ * Read locally rather than via `utils/update-check`, which drags config loading
+ * and the network update check into `core/`.
+ */
+function getGeneratorVersion() {
+    if (generatorVersion !== undefined)
+        return generatorVersion;
+    let resolved;
+    try {
+        let dir = path.dirname(fileURLToPath(import.meta.url));
+        for (let i = 0; i < 5; i++) {
+            const manifest = path.join(dir, 'package.json');
+            if (existsSync(manifest)) {
+                resolved = JSON.parse(readFileSync(manifest, 'utf-8')).version;
+                break;
+            }
+            const parent = path.dirname(dir);
+            if (parent === dir)
+                break;
+            dir = parent;
+        }
+    }
+    catch {
+        // Fall through to the warning below.
+    }
+    if (!resolved) {
+        // Say so rather than degrade quietly. A constant prefix keeps cache hits
+        // correct within one installed copy, but it stops an upgrade from
+        // invalidating anything — which is the whole reason the version is in the
+        // key, so a silent fallback would restore the bug it was added to fix.
+        console.warn('  ⚠ Could not read NexusFlow\'s own version, so cached analysis will not be ' +
+            'invalidated by an upgrade. Run `nexusflow refresh --force` after upgrading.');
+        resolved = 'unknown';
+    }
+    generatorVersion = resolved;
+    return resolved;
+}
 /**
  * Returns the path to the analysis cache file for a workspace.
  */
@@ -68,16 +111,24 @@ function unquotePorcelainPath(p) {
     return p;
 }
 /**
- * Computes a content fingerprint for a repo: the HEAD commit SHA, extended
- * with a hash of the dirty working-tree files (status line + size + mtime per
- * file) when the tree is not clean. Editing, adding, or deleting an
+ * Computes a content fingerprint for a repo: this package's version, the HEAD
+ * commit SHA, and a hash of the dirty working-tree files (status line + size +
+ * mtime per file) when the tree is not clean. Editing, adding, or deleting an
  * uncommitted file therefore changes the fingerprint too.
  *
+ * The version is part of the key so that upgrading NexusFlow re-runs the
+ * analysis the generators read from. Keyed on repo content alone, an upgrade that
+ * improved them reached no existing workspace until someone happened to run
+ * `refresh --force`. Including the version costs one local re-analysis per
+ * upgrade — file IO, no tokens — and makes stale context impossible to serve by
+ * default.
+ *
  * @param repoPath - Absolute path to the repo root.
  * @returns The fingerprint, or null when git fails (caller should re-analyze).
  */
 export async function getRepoFingerprint(repoPath) {
     try {
+        const prefix = `nf${getGeneratorVersion()}:`;
         const { stdout: shaOut } = await execa('git', ['rev-parse', 'HEAD'], {
             cwd: repoPath,
         });
@@ -87,7 +138,7 @@ export async function getRepoFingerprint(repoPath) {
         });
         const lines = statusOut.split('\n').filter(Boolean);
         if (lines.length === 0) {
-            return sha;
+            return `${prefix}${sha}`;
         }
         let dirtySignature = '';
         for (const line of lines) {
@@ -107,7 +158,7 @@ export async function getRepoFingerprint(repoPath) {
             .update(dirtySignature)
             .digest('hex')
             .slice(0, 12);
-        return `${sha}+${dirtyHash}`;
+        return `${prefix}${sha}+${dirtyHash}`;
     }
     catch {
         return null;

package/dist/core/analysis-cache.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analysis-cache.js","sourceRoot":"","sources":["../../src/core/analysis-cache.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACnD,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,KAAK,EAAE,MAAM,OAAO,CAAC;AAI9B,sEAAsE;AACtE,MAAM,UAAU,GAAG,gCAAgC,CAAC;AAEpD,uDAAuD;AACvD,IAAI,gBAAoC,CAAC;AAEzC;;;;;GAKG;AACH,SAAS,mBAAmB;IAC1B,IAAI,gBAAgB,KAAK,SAAS;QAAE,OAAO,gBAAgB,CAAC;IAE5D,IAAI,QAA4B,CAAC;IACjC,IAAI,CAAC;QACH,IAAI,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;QACvD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YAC3B,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,cAAc,CAAC,CAAC;YAChD,IAAI,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;gBACzB,QAAQ,GAAI,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,EAAE,OAAO,CAAC,CAA0B,CAAC,OAAO,CAAC;gBACzF,MAAM;YACR,CAAC;YACD,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;YACjC,IAAI,MAAM,KAAK,GAAG;gBAAE,MAAM;YAC1B,GAAG,GAAG,MAAM,CAAC;QACf,CAAC;IACH,CAAC;IAAC,MAAM,CAAC;QACP,qCAAqC;IACvC,CAAC;IAED,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,yEAAyE;QACzE,kEAAkE;QAClE,0EAA0E;QAC1E,uEAAuE;QACvE,OAAO,CAAC,IAAI,CACV,8EAA8E;YAC9E,6EAA6E,CAC9E,CAAC;QACF,QAAQ,GAAG,SAAS,CAAC;IACvB,CAAC;IAED,gBAAgB,GAAG,QAAQ,CAAC;IAC5B,OAAO,QAAQ,CAAC;AAClB,CAAC;AAqBD;;GAEG;AACH,MAAM,UAAU,oBAAoB,CAAC,aAAqB;IACxD,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,UAAU,CAAC,CAAC;AAC9C,CAAC;AAED;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,aAAqB;IAErB,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,OAAO,CAAC,CAAC;QAC5E,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAkB,CAAC;QAC/C,IAAI,CAAC,KAAK,CAAC,KAAK,IAAI,OAAO,KAAK,CAAC,KAAK,KAAK,QAAQ,EAAE,CAAC;YACpD,KAAK,CAAC,KAAK,GAAG,EAAE,CAAC;QACnB,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,OAAO,EAAE,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;IACnC,CAAC;AACH,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,aAAqB,EACrB,KAAoB,EACpB,gBAA2B;IAE3B,IAAI,gBAAgB,EAAE,CAAC;QACrB,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;YAC5C,IAAI,CAAC,gBAAgB,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC;gBACrC,OAAO,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;YAC3B,CAAC;QACH,CAAC;IACH,CAAC;IACD,MAAM,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC;IACnD,MAAM,EAAE,CAAC,SAAS,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;AACzE,CAAC;AAED;;;GAGG;AACH,SAAS,oBAAoB,CAAC,CAAS;IACrC,IAAI,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;QACzC,OAAO,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IACxB,CAAC;IACD,OAAO,CAAC,CAAC;AACX,CAAC;AAED;;;;;;;;;;;;;;;GAeG;AACH,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,QAAgB;IAEhB,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,KAAK,mBAAmB,EAAE,GAAG,CAAC;QAE7C,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,KAAK,CAAC,KAAK,EAAE,CAAC,WAAW,EAAE,MAAM,CAAC,EAAE;YACnE,GAAG,EAAE,QAAQ;SACd,CAAC,CAAC;QACH,MAAM,GAAG,GAAG,MAAM,CAAC,IAAI,EAAE,CAAC;QAE1B,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,KAAK,CAAC,KAAK,EAAE,CAAC,QAAQ,EAAE,aAAa,CAAC,EAAE;YAC1E,GAAG,EAAE,QAAQ;SACd,CAAC,CAAC;QACH,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QACpD,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,OAAO,GAAG,MAAM,GAAG,GAAG,EAAE,CAAC;QAC3B,CAAC;QAED,IAAI,cAAc,GAAG,EAAE,CAAC;QACxB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;YACzB,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;YACjC,6DAA6D;YAC7D,MAAM,MAAM,GAAG,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAG,CAAC,CAAC,CAAC,GAAG,CAAC;YACrE,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,oBAAoB,CAAC,MAAM,CAAC,CAAC,CAAC;YACnE,IAAI,CAAC;gBACH,MAAM,EAAE,GAAG,MAAM,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;gBACnC,cAAc,IAAI,GAAG,IAAI,IAAI,EAAE,CAAC,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC;YACrE,CAAC;YAAC,MAAM,CAAC;gBACP,cAAc,IAAI,GAAG,IAAI,YAAY,CAAC;YACxC,CAAC;QACH,CAAC;QAED,MAAM,SAAS,GAAG,UAAU,CAAC,MAAM,CAAC;aACjC,MAAM,CAAC,cAAc,CAAC;aACtB,MAAM,CAAC,KAAK,CAAC;aACb,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QAChB,OAAO,GAAG,MAAM,GAAG,GAAG,IAAI,SAAS,EAAE,CAAC;IACxC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC"}

package/dist/core/analysis-cache.test.js

@@ -8,7 +8,6 @@ const mockAnalysis = {
     name: 'repo-1',
     path: '/ws/repo-1',
     techStack: { languages: ['typescript'], frameworks: [], buildTools: [], projectType: 'backend' },
-    endpoints: [],
     dependencies: [],
     ports: [],
     readmeSummary: null,
@@ -66,14 +65,17 @@ describe('analysis-cache', () => {
         });
     });
     describe('getRepoFingerprint', () => {
-        it('returns the bare HEAD SHA for a clean tree', async () => {
+        it('returns the version-prefixed HEAD SHA for a clean tree', async () => {
             vi.mocked(execa).mockImplementation((async (_cmd, args) => {
                 if (args[0] === 'rev-parse')
                     return { stdout: 'abc123\n' };
                 return { stdout: '' }; // clean status
             }));
             const fp = await getRepoFingerprint('/ws/repo-1');
-            expect(fp).toBe('abc123');
+            // The version prefix gates map regeneration on upgrade, not just on repo
+            // content — otherwise a generator improvement reaches no existing
+            // workspace until someone runs `refresh --force`.
+            expect(fp).toMatch(/^nf\S+:abc123$/);
         });
         it('extends the SHA with a dirty-files hash when the tree is dirty', async () => {
             vi.mocked(execa).mockImplementation((async (_cmd, args) => {
@@ -83,7 +85,18 @@ describe('analysis-cache', () => {
             }));
             vi.mocked(fs.stat).mockResolvedValue({ size: 100, mtimeMs: 1000 });
             const fp = await getRepoFingerprint('/ws/repo-1');
-            expect(fp).toMatch(/^abc123\+[0-9a-f]{12}$/);
+            expect(fp).toMatch(/^nf\S+:abc123\+[0-9a-f]{12}$/);
+        });
+        it('invalidates every cached fingerprint when the version changes', async () => {
+            // The whole point: an upgraded install must not accept the old key.
+            vi.mocked(execa).mockImplementation((async (_cmd, args) => {
+                if (args[0] === 'rev-parse')
+                    return { stdout: 'abc123\n' };
+                return { stdout: '' };
+            }));
+            const fp = await getRepoFingerprint('/ws/repo-1');
+            expect(fp).not.toBe('abc123');
+            expect(fp.split(':')[0]).not.toBe('nf');
         });
         it('changes the fingerprint when a dirty file is edited', async () => {
             vi.mocked(execa).mockImplementation((async (_cmd, args) => {

package/dist/core/analysis-cache.test.js.map

@@ -1 +1 @@
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package/dist/core/config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../../src/core/config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAOH,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AA0CnD;;GAEG;AACH,wBAAgB,YAAY,IAAI,MAAM,CAErC;AAED;;GAEG;AACH,wBAAgB,gBAAgB,IAAI,eAAe,CAkClD;AAED;;GAEG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,IAAI,CAAC,CAGrD;AAED;;;;;GAKG;AACH,wBAAsB,UAAU,CAAC,OAAO,GAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAA;CAAO,GAAG,OAAO,CAAC,eAAe,CAAC,CAgC5F;AAED;;;;;GAKG;AACH,wBAAsB,UAAU,CAAC,MAAM,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CASvE"}
+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../../src/core/config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAOH,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AA2CnD;;GAEG;AACH,wBAAgB,YAAY,IAAI,MAAM,CAErC;AAED;;GAEG;AACH,wBAAgB,gBAAgB,IAAI,eAAe,CAkClD;AAED;;GAEG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,IAAI,CAAC,CAGrD;AAED;;;;;GAKG;AACH,wBAAsB,UAAU,CAAC,OAAO,GAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAA;CAAO,GAAG,OAAO,CAAC,eAAe,CAAC,CAgC5F;AAED;;;;;GAKG;AACH,wBAAsB,UAAU,CAAC,MAAM,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CASvE"}

package/dist/core/config.js

@@ -10,10 +10,11 @@ import { getStorageProvider, setActiveStorageProvider } from './adapters/registr
 import { debugLog } from '../utils/debug.js';
 /**
  * Activates the configured storage provider, falling back to local storage on
- * failure. Unless `quiet`, a failure prints a visible warning (a silent
- * fallback from e.g. the central-vault adapter to local is a nasty surprise). The
- * quiet path exists for bootstrap, where plugin-provided adapters are not yet
- * registered and a warning would be a false alarm.
+ * failure. Unless `quiet`, a failure prints a visible warning — a silent fallback
+ * would hide a config naming a provider that is not registered, which is exactly
+ * what happened with a `storageProvider: "obsidian"` left behind by a removed
+ * adapter. The quiet path exists for bootstrap, where plugin-provided adapters
+ * are not yet registered and a warning would be a false alarm.
  */
 function activateStorageProvider(config, quiet) {
     const providerName = config.storageProvider || 'local';

package/dist/core/config.js.map

@@ -1 +1 @@
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package/dist/core/doctor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/core/doctor.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAiBH,MAAM,MAAM,iBAAiB,GAAG,MAAM,GAAG,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;AAElE,kCAAkC;AAClC,MAAM,WAAW,WAAW;IAC1B,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,iBAAiB,CAAC;IAC1B,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,8CAA8C;AAC9C,MAAM,WAAW,YAAY;IAC3B,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,MAAM,EAAE,WAAW,EAAE,CAAC;IACtB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,EAAE,OAAO,CAAC;IACjB,gEAAgE;IAChE,OAAO,EAAE,OAAO,CAAC;CAClB;AAGD;;;;;GAKG;AACH,wBAAsB,SAAS,CAAC,aAAa,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC,CAkN5E"}

package/dist/core/doctor.js

@@ -11,7 +11,7 @@ import { loadFeatureConfig, resolveRepoInfos } from './workspace.js';
 import { isInPlace } from '../utils/feature.js';
 import { getConventionalTestCommand } from '../utils/test-command.js';
 import { getRepoStatus } from '../utils/multi-git.js';
-import { workspaceFileExists, baseFileExists } from './storage.js';
+import { workspaceFileExists } from './storage.js';
 import { analyzeAllReposCached } from '../analyzers/index.js';
 /**
  * Runs all workspace diagnostics and returns a structured report.
@@ -177,14 +177,18 @@ export async function runDoctor(workspacePath) {
     // ── 6. Core Artifacts ──────────────────────────────────────────────────
     const featureId = path.basename(workspacePath);
     const coreFiles = [
+        // AGENTS.md first: it is the one file an assistant actually loads, and
+        // CLAUDE.md is only an `@AGENTS.md` import of it. Without it a workspace has
+        // no context at all, and the import fails silently — so a doctor run that
+        // did not check it reported a clean bill of health on a workspace that could
+        // tell an assistant nothing.
+        { name: 'AGENTS.md', exists: () => workspaceFileExists(workspacePath, featureId, 'AGENTS.md') },
         { name: 'WORKSPACE.md', exists: () => workspaceFileExists(workspacePath, featureId, 'WORKSPACE.md') },
         { name: 'nexusflow-knowledge.md', exists: () => workspaceFileExists(workspacePath, featureId, 'nexusflow-knowledge.md') },
         { name: 'nexusflow-plan.md', exists: () => workspaceFileExists(workspacePath, featureId, 'nexusflow-plan.md') },
     ];
-    for (const repo of allRepos) {
-        const name = `nexusflow-map-${repo.name}.md`;
-        coreFiles.push({ name, exists: () => baseFileExists(workspacePath, repo.name, name) });
-    }
+    // Per-repo architecture maps are no longer generated — everything they held
+    // came from the repo's package.json — so their absence is not a fault.
     for (const file of coreFiles) {
         if (await file.exists()) {
             checks.push({ category: 'Core Artifacts', name: file.name, status: 'pass', message: 'exists' });

package/dist/core/doctor.js.map

@@ -1 +1 @@
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