@mrpatronz/nexusflow 0.2.17 → 0.2.18

package/dist/core/ports/storage.d.ts

@@ -0,0 +1,59 @@
+/**
+ * @module core/ports/storage
+ * Storage Port defining the interface for workspace document persistence.
+ *
+ * Adapters implement this interface to provide different storage backends.
+ * Each adapter is self-describing via the `meta` property, which enables
+ * automatic discovery in CLI, GUI, and plugin systems.
+ */
+/** Describes a single configurable field for an adapter. */
+export interface AdapterConfigField {
+    /** Machine-readable key, stored in config.json. */
+    key: string;
+    /** Human-readable label for CLI prompts and GUI forms. */
+    label: string;
+    /** Value type — 'path' renders a file picker in the GUI. */
+    type: 'string' | 'boolean' | 'number' | 'path';
+    /** Whether the field must be set before the adapter can be used. */
+    required?: boolean;
+    /** Default value when not explicitly configured. */
+    default?: unknown;
+    /** Help text shown in CLI prompts and GUI tooltips. */
+    description?: string;
+}
+/** Metadata that makes an adapter self-describing and discoverable. */
+export interface StorageAdapterMeta {
+    /** Unique machine-readable identifier (e.g. 'obsidian'). */
+    name: string;
+    /** Human-readable name for CLI tables and GUI dropdowns (e.g. 'Obsidian Vault'). */
+    displayName: string;
+    /** One-line description of what this adapter does. */
+    description: string;
+    /** Configuration fields this adapter accepts. Empty array = no config needed. */
+    configFields: AdapterConfigField[];
+}
+export interface StoragePort {
+    /** Adapter metadata — who am I, what do I need? */
+    readonly meta: StorageAdapterMeta;
+    /** Called once after registration with the user's per-adapter settings. */
+    configure?(settings: Record<string, unknown>): void;
+    /** Writes a workspace context/metadata document. */
+    writeWorkspaceFile(workspacePath: string, featureId: string, filename: string, content: string): Promise<void>;
+    /** Reads a workspace context/metadata document. */
+    readWorkspaceFile(workspacePath: string, featureId: string, filename: string): Promise<string>;
+    /** Checks if a workspace context/metadata document exists. */
+    workspaceFileExists(workspacePath: string, featureId: string, filename: string): Promise<boolean>;
+    /** Resolves the human-readable path or link to the workspace document for the AI assistant. */
+    resolveWorkspaceFileUrl(workspacePath: string, featureId: string, filename: string): string;
+    /** Writes a base-layer context document (stable maps/conventions across workspaces). */
+    writeBaseFile(workspacePath: string, repoName: string, filename: string, content: string): Promise<void>;
+    /** Reads a base-layer context document. */
+    readBaseFile(workspacePath: string, repoName: string, filename: string): Promise<string>;
+    /** Checks if a base-layer context document exists. */
+    baseFileExists(workspacePath: string, repoName: string, filename: string): Promise<boolean>;
+    /** Resolves the human-readable path or link to the base document. */
+    resolveBaseFileUrl(workspacePath: string, repoName: string, filename: string): string;
+    /** Cleanly deletes all workspace-specific documents from the storage backend. */
+    deleteWorkspace(workspacePath: string, featureId: string): Promise<void>;
+}
+//# sourceMappingURL=storage.d.ts.map

package/dist/core/ports/storage.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"storage.d.ts","sourceRoot":"","sources":["../../../src/core/ports/storage.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,4DAA4D;AAC5D,MAAM,WAAW,kBAAkB;IACjC,mDAAmD;IACnD,GAAG,EAAE,MAAM,CAAC;IACZ,0DAA0D;IAC1D,KAAK,EAAE,MAAM,CAAC;IACd,4DAA4D;IAC5D,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,QAAQ,GAAG,MAAM,CAAC;IAC/C,oEAAoE;IACpE,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,oDAAoD;IACpD,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,uDAAuD;IACvD,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,uEAAuE;AACvE,MAAM,WAAW,kBAAkB;IACjC,4DAA4D;IAC5D,IAAI,EAAE,MAAM,CAAC;IACb,oFAAoF;IACpF,WAAW,EAAE,MAAM,CAAC;IACpB,sDAAsD;IACtD,WAAW,EAAE,MAAM,CAAC;IACpB,iFAAiF;IACjF,YAAY,EAAE,kBAAkB,EAAE,CAAC;CACpC;AAED,MAAM,WAAW,WAAW;IAC1B,mDAAmD;IACnD,QAAQ,CAAC,IAAI,EAAE,kBAAkB,CAAC;IAElC,2EAA2E;IAC3E,SAAS,CAAC,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAI,CAAC;IAEpD,oDAAoD;IACpD,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAE/G,mDAAmD;IACnD,iBAAiB,CAAC,aAAa,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;IAE/F,8DAA8D;IAC9D,mBAAmB,CAAC,aAAa,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC;IAElG,+FAA+F;IAC/F,uBAAuB,CAAC,aAAa,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAC;IAE5F,wFAAwF;IACxF,aAAa,CAAC,aAAa,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAEzG,2CAA2C;IAC3C,YAAY,CAAC,aAAa,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;IAEzF,sDAAsD;IACtD,cAAc,CAAC,aAAa,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC;IAE5F,qEAAqE;IACrE,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAC;IAEtF,iFAAiF;IACjF,eAAe,CAAC,aAAa,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CAC1E"}

package/dist/core/ports/storage.js

@@ -0,0 +1,10 @@
+/**
+ * @module core/ports/storage
+ * Storage Port defining the interface for workspace document persistence.
+ *
+ * Adapters implement this interface to provide different storage backends.
+ * Each adapter is self-describing via the `meta` property, which enables
+ * automatic discovery in CLI, GUI, and plugin systems.
+ */
+export {};
+//# sourceMappingURL=storage.js.map

package/dist/core/ports/storage.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"storage.js","sourceRoot":"","sources":["../../../src/core/ports/storage.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG"}

package/dist/core/storage.d.ts

@@ -0,0 +1,10 @@
+export declare function writeWorkspaceFile(workspacePath: string, featureId: string, filename: string, content: string): Promise<void>;
+export declare function readWorkspaceFile(workspacePath: string, featureId: string, filename: string): Promise<string>;
+export declare function workspaceFileExists(workspacePath: string, featureId: string, filename: string): Promise<boolean>;
+export declare function resolveWorkspaceFileUrl(workspacePath: string, featureId: string, filename: string): string;
+export declare function writeBaseFile(workspacePath: string, repoName: string, filename: string, content: string): Promise<void>;
+export declare function readBaseFile(workspacePath: string, repoName: string, filename: string): Promise<string>;
+export declare function baseFileExists(workspacePath: string, repoName: string, filename: string): Promise<boolean>;
+export declare function resolveBaseFileUrl(workspacePath: string, repoName: string, filename: string): string;
+export declare function deleteWorkspaceFiles(workspacePath: string, featureId: string): Promise<void>;
+//# sourceMappingURL=storage.d.ts.map

package/dist/core/storage.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/storage.js

@@ -0,0 +1,29 @@
+import { getActiveStorageProvider } from './adapters/registry.js';
+export async function writeWorkspaceFile(workspacePath, featureId, filename, content) {
+    await getActiveStorageProvider().writeWorkspaceFile(workspacePath, featureId, filename, content);
+}
+export async function readWorkspaceFile(workspacePath, featureId, filename) {
+    return await getActiveStorageProvider().readWorkspaceFile(workspacePath, featureId, filename);
+}
+export async function workspaceFileExists(workspacePath, featureId, filename) {
+    return await getActiveStorageProvider().workspaceFileExists(workspacePath, featureId, filename);
+}
+export function resolveWorkspaceFileUrl(workspacePath, featureId, filename) {
+    return getActiveStorageProvider().resolveWorkspaceFileUrl(workspacePath, featureId, filename);
+}
+export async function writeBaseFile(workspacePath, repoName, filename, content) {
+    await getActiveStorageProvider().writeBaseFile(workspacePath, repoName, filename, content);
+}
+export async function readBaseFile(workspacePath, repoName, filename) {
+    return await getActiveStorageProvider().readBaseFile(workspacePath, repoName, filename);
+}
+export async function baseFileExists(workspacePath, repoName, filename) {
+    return await getActiveStorageProvider().baseFileExists(workspacePath, repoName, filename);
+}
+export function resolveBaseFileUrl(workspacePath, repoName, filename) {
+    return getActiveStorageProvider().resolveBaseFileUrl(workspacePath, repoName, filename);
+}
+export async function deleteWorkspaceFiles(workspacePath, featureId) {
+    await getActiveStorageProvider().deleteWorkspace(workspacePath, featureId);
+}
+//# sourceMappingURL=storage.js.map

package/dist/core/storage.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"storage.js","sourceRoot":"","sources":["../../src/core/storage.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,wBAAwB,EAAE,MAAM,wBAAwB,CAAC;AAElE,MAAM,CAAC,KAAK,UAAU,kBAAkB,CAAC,aAAqB,EAAE,SAAiB,EAAE,QAAgB,EAAE,OAAe;IAClH,MAAM,wBAAwB,EAAE,CAAC,kBAAkB,CAAC,aAAa,EAAE,SAAS,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAC;AACnG,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,iBAAiB,CAAC,aAAqB,EAAE,SAAiB,EAAE,QAAgB;IAChG,OAAO,MAAM,wBAAwB,EAAE,CAAC,iBAAiB,CAAC,aAAa,EAAE,SAAS,EAAE,QAAQ,CAAC,CAAC;AAChG,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,mBAAmB,CAAC,aAAqB,EAAE,SAAiB,EAAE,QAAgB;IAClG,OAAO,MAAM,wBAAwB,EAAE,CAAC,mBAAmB,CAAC,aAAa,EAAE,SAAS,EAAE,QAAQ,CAAC,CAAC;AAClG,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,aAAqB,EAAE,SAAiB,EAAE,QAAgB;IAChG,OAAO,wBAAwB,EAAE,CAAC,uBAAuB,CAAC,aAAa,EAAE,SAAS,EAAE,QAAQ,CAAC,CAAC;AAChG,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,aAAqB,EAAE,QAAgB,EAAE,QAAgB,EAAE,OAAe;IAC5G,MAAM,wBAAwB,EAAE,CAAC,aAAa,CAAC,aAAa,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAC;AAC7F,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,aAAqB,EAAE,QAAgB,EAAE,QAAgB;IAC1F,OAAO,MAAM,wBAAwB,EAAE,CAAC,YAAY,CAAC,aAAa,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC;AAC1F,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,aAAqB,EAAE,QAAgB,EAAE,QAAgB;IAC5F,OAAO,MAAM,wBAAwB,EAAE,CAAC,cAAc,CAAC,aAAa,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC;AAC5F,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,aAAqB,EAAE,QAAgB,EAAE,QAAgB;IAC1F,OAAO,wBAAwB,EAAE,CAAC,kBAAkB,CAAC,aAAa,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC;AAC1F,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,oBAAoB,CAAC,aAAqB,EAAE,SAAiB;IACjF,MAAM,wBAAwB,EAAE,CAAC,eAAe,CAAC,aAAa,EAAE,SAAS,CAAC,CAAC;AAC7E,CAAC"}

package/dist/core/workspace.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"workspace.d.ts","sourceRoot":"","sources":["../../src/core/workspace.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAoB,MAAM,aAAa,CAAC;AAWvE;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAC9B,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,GACjB,MAAM,CAER;AAED;;;;;;;;;GASG;AACH,wBAAsB,eAAe,CACnC,OAAO,EAAE,OAAO,EAChB,KAAK,EAAE,QAAQ,EAAE,GAChB,OAAO,CAAC,MAAM,CAAC,CAuEjB;AAED;;;;;;;;GAQG;AACH,wBAAsB,cAAc,CAClC,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,OAAO,EAAE,CAAC,CAmCpB;AAED;;;;;GAKG;AACH,wBAAsB,iBAAiB,CACrC,aAAa,EAAE,MAAM,EACrB,OAAO,EAAE,OAAO,GACf,OAAO,CAAC,IAAI,CAAC,CAIf;AAED;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CACrC,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,OAAO,GAAG,IAAI,CAAC,CAWzB;AAED;;;;;GAKG;AACH,wBAAsB,iBAAiB,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAgBjF;AAED;;;;GAIG;AACH,wBAAsB,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAOzE;AAED;;;;;GAKG;AACH,wBAAsB,eAAe,CACnC,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,IAAI,CAAC,CAkDf;AAED;;;;;GAKG;AACH,wBAAsB,kBAAkB,CACtC,aAAa,EAAE,MAAM,EACrB,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,IAAI,CAAC,CAgEf"}
+{"version":3,"file":"workspace.d.ts","sourceRoot":"","sources":["../../src/core/workspace.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAOH,OAAO,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAoB,MAAM,aAAa,CAAC;AAYvE;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAC9B,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,GACjB,MAAM,CAER;AAED;;;;;;;;;GASG;AACH,wBAAsB,eAAe,CACnC,OAAO,EAAE,OAAO,EAChB,KAAK,EAAE,QAAQ,EAAE,GAChB,OAAO,CAAC,MAAM,CAAC,CAiGjB;AAED;;;;;;;;GAQG;AACH,wBAAsB,cAAc,CAClC,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,OAAO,EAAE,CAAC,CAmCpB;AAED;;;;;GAKG;AACH,wBAAsB,iBAAiB,CACrC,aAAa,EAAE,MAAM,EACrB,OAAO,EAAE,OAAO,GACf,OAAO,CAAC,IAAI,CAAC,CAIf;AAED;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CACrC,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,OAAO,GAAG,IAAI,CAAC,CA+BzB;AAED;;;;;GAKG;AACH,wBAAsB,iBAAiB,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAgBjF;AAED;;;;GAIG;AACH,wBAAsB,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAOzE;AAED;;;;;GAKG;AACH,wBAAsB,eAAe,CACnC,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,IAAI,CAAC,CAwDf;AAED;;;;;GAKG;AACH,wBAAsB,kBAAkB,CACtC,aAAa,EAAE,MAAM,EACrB,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,IAAI,CAAC,CA6Df"}

package/dist/core/workspace.js

@@ -6,13 +6,14 @@
  */
 import * as fs from 'node:fs/promises';
 import * as path from 'node:path';
+import * as os from 'node:os';
 import { execa } from 'execa';
 import { createWorktree, removeWorktree } from './worktree.js';
 import { detectDefaultBranch } from '../utils/git.js';
 import { analyzeAllRepos } from '../analyzers/index.js';
 import { generateContextFiles } from '../generators/index.js';
-import { packWorkspace } from './packer.js';
-import { loadConfig } from './config.js';
+import { getActiveStorageProvider } from './adapters/registry.js';
+import { deleteWorkspaceFiles } from './storage.js';
 /** Name of the per-workspace manifest file. */
 const MANIFEST_FILE = 'nexusflow.json';
 /**
@@ -51,12 +52,31 @@ export async function createWorkspace(feature, repos) {
         // Silently ignore or log warning if git init fails
         console.warn('Warning: Failed to initialize git repository at workspace root:', error);
     }
-    // Create .vscode/settings.json to allow VS Code search to query inside ignored sub-repos
+    // Generate a .code-workspace file so VS Code opens each repo as a top-level workspace
+    // folder with its own SCM provider. Without this, VS Code's git scanner respects the
+    // root .gitignore (which lists every repo dir) and never discovers the worktrees.
+    try {
+        const workspaceName = path.basename(workspacePath);
+        const codeWorkspace = {
+            folders: [
+                { path: '.', name: `${workspaceName} (workspace)` },
+                ...repos.map((repo) => ({ path: repo.name, name: repo.name })),
+            ],
+            settings: {
+                'search.useIgnoreFiles': false,
+            },
+        };
+        await fs.writeFile(path.join(workspacePath, `${workspaceName}.code-workspace`), JSON.stringify(codeWorkspace, null, 2) + '\n', 'utf-8');
+    }
+    catch (error) {
+        console.warn('Warning: Failed to create .code-workspace file:', error);
+    }
+    // Create .vscode/settings.json for editors that don't use the .code-workspace file
     try {
         const vscodeDir = path.join(workspacePath, '.vscode');
         await fs.mkdir(vscodeDir, { recursive: true });
         const settings = {
-            "search.useIgnoreFiles": false
+            'search.useIgnoreFiles': false,
         };
         await fs.writeFile(path.join(vscodeDir, 'settings.json'), JSON.stringify(settings, null, 2) + '\n', 'utf-8');
     }
@@ -71,7 +91,7 @@ export async function createWorkspace(feature, repos) {
             "mcpServers": {
                 "nexusflow": {
                     "command": "npx",
-                    "args": ["-y", "@mrpatronz/nexusflow", "mcp", "run", workspacePath]
+                    "args": ["-y", "@mrpatronz/nexusflow", "mcp", "start"]
                 }
             }
         };
@@ -87,6 +107,8 @@ export async function createWorkspace(feature, repos) {
     }
     // Persist the feature manifest.
     await saveFeatureConfig(workspacePath, feature);
+    // Exclude NexusFlow files from git
+    await excludeNexusFlowFiles(workspacePath, feature);
     return workspacePath;
 }
 /**
@@ -136,9 +158,9 @@ export async function listWorkspaces(workspacesDir) {
  * @param feature       - The feature definition to persist.
  */
 export async function saveFeatureConfig(workspacePath, feature) {
-    const manifestPath = path.join(workspacePath, MANIFEST_FILE);
     const data = JSON.stringify(feature, null, 2) + '\n';
-    await fs.writeFile(manifestPath, data, 'utf-8');
+    const adapter = getActiveStorageProvider();
+    await adapter.writeWorkspaceFile(workspacePath, feature.id, MANIFEST_FILE, data);
 }
 /**
  * Loads a {@link Feature} from the `nexusflow.json` manifest inside a
@@ -149,17 +171,34 @@ export async function saveFeatureConfig(workspacePath, feature) {
  *          invalid.
  */
 export async function loadFeatureConfig(workspacePath) {
-    const rootDir = await findWorkspaceRoot(workspacePath);
-    if (!rootDir)
-        return null;
-    const manifestPath = path.join(rootDir, MANIFEST_FILE);
+    const featureId = path.basename(workspacePath);
+    const adapter = getActiveStorageProvider();
+    // 1. Try reading via the storage adapter first
+    try {
+        const raw = await adapter.readWorkspaceFile(workspacePath, featureId, MANIFEST_FILE);
+        return JSON.parse(raw);
+    }
+    catch { }
+    // 2. Try direct local check
+    const manifestPath = path.join(workspacePath, MANIFEST_FILE);
     try {
         const raw = await fs.readFile(manifestPath, 'utf-8');
         return JSON.parse(raw);
     }
-    catch {
-        return null;
+    catch { }
+    // 3. Try direct vault check
+    const vaultManifest = path.join(os.homedir(), '.nexusflow', 'vault', featureId, MANIFEST_FILE);
+    try {
+        const raw = await fs.readFile(vaultManifest, 'utf-8');
+        return JSON.parse(raw);
+    }
+    catch { }
+    // 4. Traverse parent directories
+    const rootDir = await findWorkspaceRoot(workspacePath);
+    if (rootDir && rootDir !== workspacePath) {
+        return loadFeatureConfig(rootDir);
     }
+    return null;
 }
 /**
  * Traverses up parent directories to find a directory containing `nexusflow.json`.
@@ -207,6 +246,12 @@ export async function resolveRepoInfo(repoPath) {
 export async function deleteWorkspace(workspacePath) {
     const feature = await loadFeatureConfig(workspacePath);
     if (feature) {
+        try {
+            await deleteWorkspaceFiles(workspacePath, feature.id);
+        }
+        catch (error) {
+            console.warn(`Warning: failed to delete workspace context files from storage:`, error);
+        }
         const origRepos = feature.originalRepos || [];
         for (let i = 0; i < feature.repos.length; i++) {
             const worktreePath = feature.repos[i];
@@ -315,9 +360,58 @@ export async function addRepoToWorkspace(workspacePath, repoPath) {
         analysis,
     };
     await generateContextFiles(ctx, feature.assistants, workspacePath);
-    const config = await loadConfig();
-    if (config.packContextXml) {
-        await packWorkspace(workspacePath);
+    await excludeNexusFlowFiles(workspacePath, feature);
+}
+/**
+ * Automatically adds NexusFlow workspace context and config files to git's local
+ * exclude list for each repository so they never show up in `git status` or get committed.
+ */
+async function excludeNexusFlowFiles(workspacePath, feature) {
+    const excludeEntries = [
+        'CLAUDE.md',
+        'AGENTS.md',
+        'WORKSPACE.md',
+        'nexusflow-knowledge.md',
+        'nexusflow-plan.md',
+        'nexusflow-conventions-*.md',
+        'nexusflow-map-*.md',
+        'nexusflow-diff-context.md',
+        '.cursor/rules/',
+        '.vscode/settings.json'
+    ];
+    for (const repoPath of feature.repos) {
+        try {
+            const gitDir = path.join(repoPath, '.git');
+            let worktreeGitDir = gitDir;
+            const stat = await fs.stat(gitDir);
+            if (stat.isFile()) {
+                const fileContent = await fs.readFile(gitDir, 'utf8');
+                const match = fileContent.match(/gitdir:\s*(.+)/);
+                if (match) {
+                    worktreeGitDir = match[1].trim();
+                }
+            }
+            const excludeFilePath = path.join(worktreeGitDir, 'info', 'exclude');
+            await fs.mkdir(path.dirname(excludeFilePath), { recursive: true });
+            let excludeContent = '';
+            try {
+                excludeContent = await fs.readFile(excludeFilePath, 'utf8');
+            }
+            catch { }
+            let updated = false;
+            for (const entry of excludeEntries) {
+                if (!excludeContent.includes(entry)) {
+                    excludeContent = excludeContent.trim() + '\n' + entry + '\n';
+                    updated = true;
+                }
+            }
+            if (updated) {
+                await fs.writeFile(excludeFilePath, excludeContent.trim() + '\n', 'utf8');
+            }
+        }
+        catch {
+            // Ignore if not a git repo or directory missing
+        }
     }
 }
 //# sourceMappingURL=workspace.js.map

package/dist/core/workspace.js.map

@@ -1 +1 @@
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package/dist/generators/base.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../src/generators/base.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAKH,OAAO,KAAK,EAAE,gBAAgB,EAAmB,MAAM,aAAa,CAAC;AAwDrE;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,gBAAgB,GAAG,MAAM,CAuKjE"}
+{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../src/generators/base.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAKH,OAAO,KAAK,EAAE,gBAAgB,EAAmB,MAAM,aAAa,CAAC;AA4DrE;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,gBAAgB,GAAG,MAAM,CAsKjE"}

package/dist/generators/base.js

@@ -3,16 +3,18 @@
  * Builds the shared markdown context content that all AI assistant generators
  * use as their foundation. Now includes rich project analysis data when available.
  */
-import * as path from 'node:path';
 import * as fs from 'node:fs';
+import { resolveBaseFileUrl, resolveWorkspaceFileUrl } from '../core/storage.js';
 /**
  * Formats a ProjectAnalysis into a readable markdown section.
  */
 function formatProjectSection(analysis, workspacePath) {
     const lines = [];
     lines.push(`### ${analysis.name}`);
-    const mapPath = path.join(workspacePath, `nexusflow-map-${analysis.name}.md`).replace(/\\/g, '/');
+    const mapPath = resolveBaseFileUrl(workspacePath, analysis.name, `nexusflow-map-${analysis.name}.md`);
     lines.push(`- **Architecture Map**: [nexusflow-map-${analysis.name}.md](file:///${mapPath}) — **Instruction**: Before modifying this repository, read its architecture map. For exploration, consult the map's section index on demand.`);
+    const baseKnowledgePath = resolveBaseFileUrl(workspacePath, analysis.name, 'nexusflow-knowledge.md');
+    lines.push(`- **Base Knowledge & Decisions**: [nexusflow-knowledge.md](file:///${baseKnowledgePath}) — **Instruction**: Read this for persistent codebase learnings, decisions, and conventions.`);
     // Tech stack
     const { techStack } = analysis;
     if (techStack.languages.length > 0 && techStack.languages[0] !== 'other') {
@@ -86,15 +88,15 @@ export function buildContextContent(ctx) {
             }
         }
         if (allConfigs.length > 0) {
-            existingConfigsSection = `
----
-
-## Existing AI Configurations
-
-The following repos already have AI assistant configuration files.
-Incorporate their instructions when working in those repos:
-
-${allConfigs.join('\n')}
+            existingConfigsSection = `
+---
+
+## Existing AI Configurations
+
+The following repos already have AI assistant configuration files.
+Incorporate their instructions when working in those repos:
+
+${allConfigs.join('\n')}
 `;
         }
     }
@@ -122,23 +124,22 @@ ${allConfigs.join('\n')}
             }
         }
         if (parts.length > 0) {
-            resumptionSection = `
----
-
-## Workspace Resumption & Verification Commands
-
-Use these pre-configured commands to spin up mocks, run background services, and verify your changes:
-
-${parts.join('\n')}
+            resumptionSection = `
+---
+
+## Workspace Resumption & Verification Commands
+
+Use these pre-configured commands to spin up mocks, run background services, and verify your changes:
+
+${parts.join('\n')}
 `;
         }
     }
-    const knowledgePath = path.join(workspacePath, 'nexusflow-knowledge.md').replace(/\\/g, '/');
+    const knowledgePath = resolveWorkspaceFileUrl(workspacePath, feature.id, 'nexusflow-knowledge.md').replace(/\\/g, '/');
     let setupDone = false;
     try {
-        const realKnowledgePath = path.join(workspacePath, 'nexusflow-knowledge.md');
-        if (fs.existsSync(realKnowledgePath)) {
-            const content = fs.readFileSync(realKnowledgePath, 'utf-8');
+        if (fs.existsSync(knowledgePath)) {
+            const content = fs.readFileSync(knowledgePath, 'utf-8');
             if (!content.includes('No assumptions recorded yet') && !content.includes('AI assistant to populate')) {
                 setupDone = true;
             }
@@ -148,69 +149,69 @@ ${parts.join('\n')}
     // Teamwork strategy section
     let teamworkSection = '';
     if (feature.teamworkInstructions) {
-        teamworkSection = `
----
-
-## Team Collaboration Strategy
-
-${feature.teamworkInstructions}
+        teamworkSection = `
+---
+
+## Team Collaboration Strategy
+
+${feature.teamworkInstructions}
 `;
     }
     const taskSection = setupDone
         ? `## Setup Status\n\n✅ **Setup Completed**: Project assumptions and initial questions have been addressed. Refer to [nexusflow-knowledge.md](file:///${knowledgePath}) for persistent session details.`
         : `## First Steps\n\nYour very first task upon entering this workspace is to explore the codebase and align with the user:\n\n1. **Verify Assumptions**: Open [nexusflow-knowledge.md](file:///${knowledgePath}) and fill in the **Project Assumptions** section with a brief description of what each project does, its tech stack, and responsibilities.\n2. **Raise Questions**: Document any outstanding uncertainties or architectural questions in the **Clarifying Questions for the User** section.\n3. **Obtain Approval**: Ask the user to confirm your assumptions and answer your questions before writing any code.`;
-    return `# Multi-Repo Workspace Context
-
-## Feature: ${feature.id}
-
-**Description:** ${feature.description}
-
-> For the detailed feature specification, architecture decisions, and session memory, see [nexusflow-knowledge.md](file:///${knowledgePath}).
-
----
-
-## Projects
-
-This workspace contains the following projects, each checked out as a
-git worktree on the feature branch:
-
-${projectSections}
-${existingConfigsSection}
-${resumptionSection}
----
-
-${taskSection}
-${teamworkSection}
----
-
-## Guidelines
-
-- **Multi-Repo Workspace Structure**: This workspace is a multi-repository developer environment where each project subdirectory (e.g. \`my-api\`, \`my-frontend\`) is a separate Git worktree checked out on the feature branch \`${feature.branchName}\`.
-  - **All code changes** must be made within the appropriate project subdirectories.
-  - **Worktree Isolation**: Under no circumstances should you edit files, read code, or run commands in the original/main repository directories outside of this workspace folder. All development must be strictly contained within the checked-out worktree subdirectories of this workspace.
-  - **Git commands** (like \`git status\`, \`git add\`, \`git commit\`, \`git push\`) must be run inside the specific project subdirectories (e.g. \`cd my-api && git commit -m "..."\`), NOT in the workspace root.
-  - **Project commands** (like \`npm install\`, \`npm run build\`, \`npm run test\`) must be run inside the project subdirectories.
-  - **Global helpers**: Alternatively, you can run NexusFlow CLI commands from the workspace root:
-    - \`nexusflow diff\` — view changes across all sub-repositories.
-    - \`nexusflow commit\` — commit and push changes across modified repositories.
-    - \`nexusflow sync\` — rebase all repositories with their default base branches.
-    - \`nexusflow refresh\` — regenerate maps, context files and plans without rebasing.
-    - \`nexusflow doctor\` — run diagnostics to verify workspace health.
-- **Workspace Knowledge**: Read \`nexusflow-knowledge.md\` at the start of every session. It serves as the persistent memory for this feature. Before ending your session, append significant architecture decisions, discovered gotchas, and checklist progress to \`nexusflow-knowledge.md\`. Never delete or overwrite existing knowledge/decisions — only append.
-- **Implementation Plan**: Refer to \`nexusflow-plan.md\` for the suggested implementation order based on dependency analysis. Follow the phased implementation order to avoid blocking yourself on cross-repo dependencies.
+    return `# Multi-Repo Workspace Context
+
+## Feature: ${feature.id}
+
+**Description:** ${feature.description}
+
+> For the detailed feature specification, architecture decisions, and session memory, see [nexusflow-knowledge.md](file:///${knowledgePath}).
+
+---
+
+## Projects
+
+This workspace contains the following projects, each checked out as a
+git worktree on the feature branch:
+
+${projectSections}
+${existingConfigsSection}
+${resumptionSection}
+---
+
+${taskSection}
+${teamworkSection}
+---
+
+## Guidelines
+
+- **Multi-Repo Workspace Structure**: This workspace is a multi-repository developer environment where each project subdirectory (e.g. \`my-api\`, \`my-frontend\`) is a separate Git worktree checked out on the feature branch \`${feature.branchName}\`.
+  - **All code changes** must be made within the appropriate project subdirectories.
+  - **Worktree Isolation**: Under no circumstances should you edit files, read code, or run commands in the original/main repository directories outside of this workspace folder. All development must be strictly contained within the checked-out worktree subdirectories of this workspace.
+  - **Git commands** (like \`git status\`, \`git add\`, \`git commit\`, \`git push\`) must be run inside the specific project subdirectories (e.g. \`cd my-api && git commit -m "..."\`), NOT in the workspace root.
+  - **Project commands** (like \`npm install\`, \`npm run build\`, \`npm run test\`) must be run inside the project subdirectories.
+  - **Global helpers**: Alternatively, you can run NexusFlow CLI commands from the workspace root:
+    - \`nexusflow diff\` — view changes across all sub-repositories.
+    - \`nexusflow commit\` — commit and push changes across modified repositories.
+    - \`nexusflow sync\` — rebase all repositories with their default base branches.
+    - \`nexusflow refresh\` — regenerate maps, context files and plans without rebasing.
+    - \`nexusflow doctor\` — run diagnostics to verify workspace health.
+- **Workspace Knowledge**: Read \`nexusflow-knowledge.md\` at the start of every session. It serves as the persistent memory for this feature. Before ending your session, append significant architecture decisions, discovered gotchas, and checklist progress to \`nexusflow-knowledge.md\`. Never delete or overwrite existing knowledge/decisions — only append.
+- **Implementation Plan**: Refer to \`nexusflow-plan.md\` for the suggested implementation order based on dependency analysis. Follow the phased implementation order to avoid blocking yourself on cross-repo dependencies.
 ${localLlmEnabled ? `- **Local AI Agent Delegation (Token Optimizer)**: You have access to a local Small Language Model (SLM) on the developer's machine via the MCP tool \`delegate_to_local_agent\`.${ctx.localLlm ? `\n  - **Model Capacity**: The local agent is running \`${ctx.localLlm.model}\`. ${ctx.localLlm.model.match(/70b|72b|32b|14b/i)
         ? 'This is a highly capable model; you can delegate complex reasoning and larger code generation tasks.'
-        : 'This is a smaller model; it is best suited for targeted search, log parsing, summarization, and simple boilerplate.'}` : ''}
-  - **Usage rule**: Whenever you need to perform high-token tasks (like searching large chunks of code, analyzing raw service logs to debug, or generating repetitive boilerplate), **always use \`delegate_to_local_agent\`** first.
-  - The local model is free and fast. Pass the instruction and any logs/source files in \`filesToRead\` (relative paths). Use the distilled summary returned to formulate your final output, saving up to 90% in remote context tokens.
-` : ''}- Read each project's existing \`README.md\` and any doc files before proposing changes.
-- When modifying a shared library, check every downstream consumer for breakage.
-- Prefer small, focused commits that touch one repo at a time when possible.
-- If a change must span repos, describe the ordering and any migration steps.
-
-
-
-
+        : 'This is a smaller model; it is best suited for targeted search, log parsing, summarization, and simple boilerplate.'}` : ''}
+  - **Usage rule**: Whenever you need to perform high-token tasks (like searching large chunks of code, analyzing raw service logs to debug, or generating repetitive boilerplate), **always use \`delegate_to_local_agent\`** first.
+  - The local model is free and fast. Pass the instruction and any logs/source files in \`filesToRead\` (relative paths). Use the distilled summary returned to formulate your final output, saving up to 90% in remote context tokens.
+` : ''}- Read each project's existing \`README.md\` and any doc files before proposing changes.
+- When modifying a shared library, check every downstream consumer for breakage.
+- Prefer small, focused commits that touch one repo at a time when possible.
+- If a change must span repos, describe the ordering and any migration steps.
+
+
+
+
 `;
 }
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