@mrpatronz/nexusflow 0.1.2 → 0.1.3

package/dist/commands/mcp.d.ts

@@ -0,0 +1,3 @@
+export declare function mcpRunCommand(workspace?: string): Promise<void>;
+export declare function mcpSetupCommand(): Promise<void>;
+//# sourceMappingURL=mcp.d.ts.map

package/dist/commands/mcp.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/mcp.js

@@ -0,0 +1,88 @@
+import * as os from 'node:os';
+import * as path from 'node:path';
+import * as fs from 'node:fs/promises';
+import chalk from 'chalk';
+import { startMcpServer } from '../mcp/server.js';
+export async function mcpRunCommand(workspace) {
+    // If not provided, it attempts to use process.cwd() or waits for workspaceId in MCP calls.
+    // The startMcpServer function handles this.
+    await startMcpServer(workspace);
+}
+export async function mcpSetupCommand() {
+    console.log(chalk.blue.bold('\nSetting up NexusFlow MCP Server for AI Assistants...'));
+    const isWin = os.platform() === 'win32';
+    const isMac = os.platform() === 'darwin';
+    const home = os.homedir();
+    const configPaths = [
+        // Cursor
+        path.join(home, '.cursor', 'mcp.json'),
+        // VS Code Insiders (for Antigravity/Copilot)
+        isWin
+            ? path.join(home, 'AppData', 'Roaming', 'Code - Insiders', 'User', 'mcp.json')
+            : isMac
+                ? path.join(home, 'Library', 'Application Support', 'Code - Insiders', 'User', 'mcp.json')
+                : path.join(home, '.config', 'Code - Insiders', 'User', 'mcp.json'),
+        // VS Code (Stable)
+        isWin
+            ? path.join(home, 'AppData', 'Roaming', 'Code', 'User', 'mcp.json')
+            : isMac
+                ? path.join(home, 'Library', 'Application Support', 'Code', 'User', 'mcp.json')
+                : path.join(home, '.config', 'Code', 'User', 'mcp.json'),
+        // Claude Desktop
+        isWin
+            ? path.join(home, 'AppData', 'Roaming', 'Claude', 'claude_desktop_config.json')
+            : isMac
+                ? path.join(home, 'Library', 'Application Support', 'Claude', 'claude_desktop_config.json')
+                : ''
+    ].filter(Boolean);
+    const mcpConfig = {
+        command: 'npx',
+        args: ['-y', '@mrpatronz/nexusflow', 'mcp', 'run']
+    };
+    let updatedCount = 0;
+    for (const configPath of configPaths) {
+        if (!configPath)
+            continue;
+        try {
+            let configData = { mcpServers: {} };
+            try {
+                await fs.access(configPath);
+                const raw = await fs.readFile(configPath, 'utf8');
+                // Handle empty or invalid files gracefully
+                if (raw.trim()) {
+                    configData = JSON.parse(raw);
+                }
+                if (!configData.mcpServers)
+                    configData.mcpServers = {};
+            }
+            catch (e) {
+                // File doesn't exist, we will create it if the directory exists
+                const dir = path.dirname(configPath);
+                try {
+                    await fs.access(dir);
+                }
+                catch {
+                    // Directory doesn't exist, skip this environment
+                    continue;
+                }
+            }
+            configData.mcpServers['nexusflow'] = mcpConfig;
+            await fs.writeFile(configPath, JSON.stringify(configData, null, 2), 'utf8');
+            console.log(chalk.green(`  ✓ Configured MCP in: ${configPath}`));
+            updatedCount++;
+        }
+        catch (e) {
+            console.log(chalk.gray(`  - Skipped ${configPath} (${e.message})`));
+        }
+    }
+    if (updatedCount > 0) {
+        console.log(chalk.green.bold(`\nSuccessfully configured ${updatedCount} AI environments!`));
+        console.log(chalk.white('You may need to restart your editor or Claude Desktop for the changes to take effect.'));
+    }
+    else {
+        console.log(chalk.yellow('\nCould not find any standard configuration files to update.'));
+        console.log('You can manually add this configuration to your mcp.json:');
+        console.log(JSON.stringify({ mcpServers: { nexusflow: mcpConfig } }, null, 2));
+    }
+}
+//# sourceMappingURL=mcp.js.map

package/dist/commands/mcp.js.map

@@ -0,0 +1 @@
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package/dist/core/workspace.d.ts.map

@@ -1 +1 @@
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package/dist/core/workspace.js

@@ -6,6 +6,7 @@
  */
 import * as fs from 'node:fs/promises';
 import * as path from 'node:path';
+import { execa } from 'execa';
 import { createWorktree } from './worktree.js';
 /** Name of the per-workspace manifest file. */
 const MANIFEST_FILE = 'nexusflow.json';
@@ -33,6 +34,18 @@ export async function createWorkspace(feature, repos) {
     const workspacePath = feature.workspacePath;
     // Ensure the workspace directory exists.
     await fs.mkdir(workspacePath, { recursive: true });
+    // Initialize git repository at workspace root to prevent AI assistants (like Claude)
+    // from climbing up to parent git repositories (main/master).
+    try {
+        await execa('git', ['init'], { cwd: workspacePath });
+        // Write a .gitignore to ignore the sub-repositories
+        const gitignoreContent = repos.map((repo) => `/${repo.name}/`).join('\n') + '\n';
+        await fs.writeFile(path.join(workspacePath, '.gitignore'), gitignoreContent, 'utf-8');
+    }
+    catch (error) {
+        // Silently ignore or log warning if git init fails
+        console.warn('Warning: Failed to initialize git repository at workspace root:', error);
+    }
     // Create a worktree for each repo inside the workspace.
     for (const repo of repos) {
         const worktreeTarget = path.join(workspacePath, repo.name);

package/dist/core/workspace.js.map

@@ -1 +1 @@
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+{"version":3,"file":"workspace.js","sourceRoot":"","sources":["../../src/core/workspace.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,KAAK,EAAE,MAAM,OAAO,CAAC;AAG9B,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAE/C,+CAA+C;AAC/C,MAAM,aAAa,GAAG,gBAAgB,CAAC;AAEvC;;;;;;GAMG;AACH,MAAM,UAAU,gBAAgB,CAC9B,aAAqB,EACrB,UAAkB;IAElB,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,UAAU,CAAC,CAAC;AAC9C,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,OAAgB,EAChB,KAAiB;IAEjB,MAAM,aAAa,GAAG,OAAO,CAAC,aAAa,CAAC;IAE5C,yCAAyC;IACzC,MAAM,EAAE,CAAC,KAAK,CAAC,aAAa,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAEnD,qFAAqF;IACrF,6DAA6D;IAC7D,IAAI,CAAC;QACH,MAAM,KAAK,CAAC,KAAK,EAAE,CAAC,MAAM,CAAC,EAAE,EAAE,GAAG,EAAE,aAAa,EAAE,CAAC,CAAC;QAErD,oDAAoD;QACpD,MAAM,gBAAgB,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC;QACjF,MAAM,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,YAAY,CAAC,EAAE,gBAAgB,EAAE,OAAO,CAAC,CAAC;IACxF,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,mDAAmD;QACnD,OAAO,CAAC,IAAI,CAAC,iEAAiE,EAAE,KAAK,CAAC,CAAC;IACzF,CAAC;IAED,wDAAwD;IACxD,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,cAAc,GAAG,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;QAC3D,MAAM,cAAc,CAClB,IAAI,CAAC,IAAI,EACT,cAAc,EACd,OAAO,CAAC,UAAU,EAClB,IAAI,CAAC,aAAa,CACnB,CAAC;IACJ,CAAC;IAED,gCAAgC;IAChC,MAAM,iBAAiB,CAAC,aAAa,EAAE,OAAO,CAAC,CAAC;IAEhD,OAAO,aAAa,CAAC;AACvB,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,aAAqB;IAErB,MAAM,QAAQ,GAAc,EAAE,CAAC;IAE/B,KAAK,UAAU,IAAI,CAAC,GAAW,EAAE,KAAa;QAC5C,IAAI,KAAK,GAAG,CAAC;YAAE,OAAO;QAEtB,IAAI,OAAmC,CAAC;QACxC,IAAI,CAAC;YACH,OAAO,GAAG,MAAM,EAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;QAC3D,CAAC;QAAC,MAAM,CAAC;YACP,OAAO;QACT,CAAC;QAED,gEAAgE;QAChE,MAAM,WAAW,GAAG,OAAO,CAAC,IAAI,CAC9B,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,IAAI,KAAK,aAAa,CAC9C,CAAC;QACF,IAAI,WAAW,EAAE,CAAC;YAChB,MAAM,MAAM,GAAG,MAAM,iBAAiB,CAAC,GAAG,CAAC,CAAC;YAC5C,IAAI,MAAM,EAAE,CAAC;gBACX,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;gBACtB,OAAO,CAAC,0BAA0B;YACpC,CAAC;QACH,CAAC;QAED,6CAA6C;QAC7C,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;YAC5B,IAAI,KAAK,CAAC,WAAW,EAAE,EAAE,CAAC;gBACxB,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;YACpD,CAAC;QACH,CAAC;IACH,CAAC;IAED,MAAM,IAAI,CAAC,aAAa,EAAE,CAAC,CAAC,CAAC;IAC7B,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,aAAqB,EACrB,OAAgB;IAEhB,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,aAAa,CAAC,CAAC;IAC7D,MAAM,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC;IACrD,MAAM,EAAE,CAAC,SAAS,CAAC,YAAY,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;AAClD,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,aAAqB;IAErB,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,aAAa,CAAC,CAAC;IAE7D,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;QACrD,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAY,CAAC;IACpC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC"}

package/dist/core/worktree.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"worktree.d.ts","sourceRoot":"","sources":["../../src/core/worktree.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAIH;;;;;;;;;;;GAWG;AACH,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACjB,OAAO,CAAC,IAAI,CAAC,CAUf;AAED;;;;;;;GAOG;AACH,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,YAAY,EAAE,MAAM,GACnB,OAAO,CAAC,IAAI,CAAC,CAEf"}
+{"version":3,"file":"worktree.d.ts","sourceRoot":"","sources":["../../src/core/worktree.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAIH;;;;;;;;;;;GAWG;AACH,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACjB,OAAO,CAAC,IAAI,CAAC,CA2Bf;AAED;;;;;;;GAOG;AACH,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,YAAY,EAAE,MAAM,GACnB,OAAO,CAAC,IAAI,CAAC,CAEf"}

package/dist/core/worktree.js

@@ -16,10 +16,28 @@ import { execa } from 'execa';
  * @param baseBranch - Remote branch to base the new branch on (e.g. 'main').
  */
 export async function createWorktree(repoPath, targetPath, branchName, baseBranch) {
+    let fetched = false;
     // Fetch latest remote state.
-    await execa('git', ['fetch', 'origin'], { cwd: repoPath });
-    // Create the worktree with a new branch based on the remote base branch.
-    await execa('git', ['worktree', 'add', targetPath, '-b', branchName, `origin/${baseBranch}`], { cwd: repoPath });
+    try {
+        await execa('git', ['fetch', 'origin'], { cwd: repoPath });
+        fetched = true;
+    }
+    catch {
+        // Silently ignore fetch failures (e.g., offline or no remote origin)
+    }
+    // Determine starting point: remote branch if fetched successfully and exists, else local branch.
+    let startPoint = baseBranch;
+    if (fetched) {
+        try {
+            await execa('git', ['rev-parse', '--verify', `origin/${baseBranch}`], { cwd: repoPath });
+            startPoint = `origin/${baseBranch}`;
+        }
+        catch {
+            // remote tracking branch does not exist, fallback to local branch
+        }
+    }
+    // Create the worktree with a new branch based on the start point.
+    await execa('git', ['worktree', 'add', targetPath, '-b', branchName, startPoint], { cwd: repoPath });
 }
 /**
  * Removes an existing git worktree.

package/dist/core/worktree.js.map

@@ -1 +1 @@
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+{"version":3,"file":"worktree.js","sourceRoot":"","sources":["../../src/core/worktree.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,KAAK,EAAE,MAAM,OAAO,CAAC;AAE9B;;;;;;;;;;;GAWG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,QAAgB,EAChB,UAAkB,EAClB,UAAkB,EAClB,UAAkB;IAElB,IAAI,OAAO,GAAG,KAAK,CAAC;IACpB,6BAA6B;IAC7B,IAAI,CAAC;QACH,MAAM,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,QAAQ,CAAC,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,CAAC,CAAC;QAC3D,OAAO,GAAG,IAAI,CAAC;IACjB,CAAC;IAAC,MAAM,CAAC;QACP,qEAAqE;IACvE,CAAC;IAED,iGAAiG;IACjG,IAAI,UAAU,GAAG,UAAU,CAAC;IAC5B,IAAI,OAAO,EAAE,CAAC;QACZ,IAAI,CAAC;YACH,MAAM,KAAK,CAAC,KAAK,EAAE,CAAC,WAAW,EAAE,UAAU,EAAE,UAAU,UAAU,EAAE,CAAC,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,CAAC,CAAC;YACzF,UAAU,GAAG,UAAU,UAAU,EAAE,CAAC;QACtC,CAAC;QAAC,MAAM,CAAC;YACP,kEAAkE;QACpE,CAAC;IACH,CAAC;IAED,kEAAkE;IAClE,MAAM,KAAK,CACT,KAAK,EACL,CAAC,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,CAAC,EAC7D,EAAE,GAAG,EAAE,QAAQ,EAAE,CAClB,CAAC;AACJ,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,QAAgB,EAChB,YAAoB;IAEpB,MAAM,KAAK,CAAC,KAAK,EAAE,CAAC,UAAU,EAAE,QAAQ,EAAE,YAAY,CAAC,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,CAAC,CAAC;AAC9E,CAAC"}

package/dist/generators/base.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../src/generators/base.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,gBAAgB,EAAmB,MAAM,aAAa,CAAC;AA6DrE;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,gBAAgB,GAAG,MAAM,CAmHjE"}
+{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../src/generators/base.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,gBAAgB,EAAmB,MAAM,aAAa,CAAC;AA6DrE;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,gBAAgB,GAAG,MAAM,CA2HjE"}

package/dist/generators/base.js

@@ -163,6 +163,14 @@ Once you have created \`nexusflow-overview.md\` and compiled your questions, ask
 
 ## Guidelines
 
+- **Multi-Repo Workspace Structure**: This workspace is a multi-repository developer environment where each project subdirectory (e.g. \`my-api\`, \`my-frontend\`) is a separate Git worktree checked out on the feature branch \`\${feature.branchName}\`.
+  - **All code changes** must be made within the appropriate project subdirectories.
+  - **Git commands** (like \`git status\`, \`git add\`, \`git commit\`, \`git push\`) must be run inside the specific project subdirectories (e.g. \`cd my-api && git commit -m "..."\`), NOT in the workspace root.
+  - **Project commands** (like \`npm install\`, \`npm run build\`, \`npm run test\`) must be run inside the project subdirectories.
+  - **Global helpers**: Alternatively, you can run NexusFlow CLI commands from the workspace root:
+    - \`nexusflow diff\` — view changes across all sub-repositories.
+    - \`nexusflow commit\` — commit and push changes across modified repositories.
+    - \`nexusflow sync\` — rebase all repositories with their default base branches.
 - **Workspace Knowledge**: Read \`nexusflow-knowledge.md\` at the start of every session. It serves as the persistent memory for this feature. Before ending your session, append significant architecture decisions, discovered gotchas, and checklist progress to \`nexusflow-knowledge.md\`. Never delete or overwrite existing knowledge/decisions — only append.
 - **Implementation Plan**: Refer to \`nexusflow-plan.md\` for the suggested implementation order based on dependency analysis. Follow the phased implementation order to avoid blocking yourself on cross-repo dependencies.
 - Read each project's existing \`README.md\` and any doc files before proposing changes.

package/dist/generators/base.js.map

@@ -1 +1 @@
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+{"version":3,"file":"base.js","sourceRoot":"","sources":["../../src/generators/base.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH;;GAEG;AACH,SAAS,oBAAoB,CAAC,QAAyB;IACrD,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,KAAK,CAAC,IAAI,CAAC,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC;IAEnC,aAAa;IACb,MAAM,EAAE,SAAS,EAAE,GAAG,QAAQ,CAAC;IAC/B,IAAI,SAAS,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,IAAI,SAAS,CAAC,SAAS,CAAC,CAAC,CAAC,KAAK,OAAO,EAAE,CAAC;QACzE,MAAM,OAAO,GAAG,SAAS,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC/C,MAAM,KAAK,GAAG,SAAS,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC;QAClG,MAAM,QAAQ,GAAG,SAAS,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC;QAErG,KAAK,CAAC,IAAI,CAAC,eAAe,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC;QACnD,KAAK,CAAC,IAAI,CAAC,oBAAoB,OAAO,EAAE,CAAC,CAAC;QAC1C,KAAK,CAAC,IAAI,CAAC,qBAAqB,KAAK,EAAE,CAAC,CAAC;QACzC,KAAK,CAAC,IAAI,CAAC,sBAAsB,QAAQ,EAAE,CAAC,CAAC;IAC/C,CAAC;IAED,iBAAiB;IACjB,IAAI,QAAQ,CAAC,aAAa,EAAE,CAAC;QAC3B,oDAAoD;QACpD,MAAM,OAAO,GAAG,QAAQ,CAAC,aAAa;aACnC,OAAO,CAAC,YAAY,EAAE,EAAE,CAAC,CAAC,kBAAkB;aAC5C,IAAI,EAAE;aACN,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;aACb,IAAI,EAAE,CAAC;QACV,IAAI,OAAO,EAAE,CAAC;YACZ,KAAK,CAAC,IAAI,CAAC,kBAAkB,OAAO,EAAE,CAAC,CAAC;QAC1C,CAAC;IACH,CAAC;IAED,gBAAgB;IAChB,IAAI,QAAQ,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAClC,KAAK,CAAC,IAAI,CAAC,wBAAwB,QAAQ,CAAC,SAAS,CAAC,MAAM,aAAa,CAAC,CAAC;QAC3E,0BAA0B;QAC1B,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QAC9C,KAAK,MAAM,EAAE,IAAI,KAAK,EAAE,CAAC;YACvB,KAAK,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,MAAM,IAAI,EAAE,CAAC,IAAI,IAAI,CAAC,CAAC;QAChD,CAAC;QACD,IAAI,QAAQ,CAAC,SAAS,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC;YACnC,KAAK,CAAC,IAAI,CAAC,eAAe,QAAQ,CAAC,SAAS,CAAC,MAAM,GAAG,EAAE,QAAQ,CAAC,CAAC;QACpE,CAAC;IACH,CAAC;IAED,QAAQ;IACR,IAAI,QAAQ,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC9B,MAAM,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,QAAQ,UAAU,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACpG,KAAK,CAAC,IAAI,CAAC,gBAAgB,OAAO,EAAE,CAAC,CAAC;IACxC,CAAC;IAED,OAAO;IACP,KAAK,CAAC,IAAI,CAAC,iBAAiB,QAAQ,CAAC,IAAI,IAAI,CAAC,CAAC;IAE/C,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,mBAAmB,CAAC,GAAqB;IACvD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,EAAE,GAAG,GAAG,CAAC;IAEzC,wEAAwE;IACxE,IAAI,eAAuB,CAAC;IAE5B,IAAI,QAAQ,IAAI,QAAQ,CAAC,IAAI,GAAG,CAAC,EAAE,CAAC;QAClC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;YAC/B,MAAM,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YAC/B,IAAI,CAAC;gBAAE,OAAO,oBAAoB,CAAC,CAAC,CAAC,CAAC;YACtC,OAAO,OAAO,CAAC,CAAC,IAAI,mBAAmB,CAAC,CAAC,IAAI,IAAI,CAAC;QACpD,CAAC,CAAC,CAAC;QACH,eAAe,GAAG,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAC1C,CAAC;SAAM,CAAC;QACN,eAAe,GAAG,KAAK;aACpB,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,IAAI,yBAAyB,CAAC,CAAC,aAAa,KAAK,CAAC;aACtF,IAAI,CAAC,IAAI,CAAC,CAAC;IAChB,CAAC;IAED,oCAAoC;IACpC,IAAI,sBAAsB,GAAG,EAAE,CAAC;IAChC,IAAI,QAAQ,IAAI,QAAQ,CAAC,IAAI,GAAG,CAAC,EAAE,CAAC;QAClC,MAAM,UAAU,GAAa,EAAE,CAAC;QAChC,KAAK,MAAM,CAAC,EAAE,CAAC,CAAC,IAAI,QAAQ,EAAE,CAAC;YAC7B,KAAK,MAAM,MAAM,IAAI,CAAC,CAAC,iBAAiB,EAAE,CAAC;gBACzC,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,IAAI,YAAY,MAAM,CAAC,YAAY,OAAO,MAAM,CAAC,SAAS,GAAG,CAAC,CAAC;YAC1F,CAAC;QACH,CAAC;QACD,IAAI,UAAU,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC1B,sBAAsB,GAAG;;;;;;;;EAQ7B,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC;CACtB,CAAC;QACE,CAAC;IACH,CAAC;IAED,8BAA8B;IAC9B,IAAI,iBAAiB,GAAG,EAAE,CAAC;IAC3B,IAAI,OAAO,CAAC,UAAU,EAAE,CAAC;QACvB,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,YAAY,EAAE,GAAG,OAAO,CAAC,UAAU,CAAC;QACtE,MAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,IAAI,WAAW;YAAE,KAAK,CAAC,IAAI,CAAC,+BAA+B,WAAW,IAAI,CAAC,CAAC;QAC5E,IAAI,YAAY;YAAE,KAAK,CAAC,IAAI,CAAC,8BAA8B,YAAY,IAAI,CAAC,CAAC;QAC7E,IAAI,WAAW;YAAE,KAAK,CAAC,IAAI,CAAC,sCAAsC,WAAW,IAAI,CAAC,CAAC;QAEnF,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACrB,iBAAiB,GAAG;;;;;;;EAOxB,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC;CACjB,CAAC;QACE,CAAC;IACH,CAAC;IAED,OAAO;;cAEK,OAAO,CAAC,EAAE;;mBAEL,OAAO,CAAC,WAAW;;gBAEtB,OAAO,CAAC,UAAU;eACnB,OAAO,CAAC,SAAS;;;;;;;;;EAS9B,eAAe;EACf,sBAAsB;EACtB,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAwClB,CAAC;AACF,CAAC"}

package/dist/index.js

@@ -20,6 +20,7 @@ import { uiCommand } from './commands/ui.js';
 import { syncCommand } from './commands/sync.js';
 import { commitCommand } from './commands/commit.js';
 import { diffCommand } from './commands/diff.js';
+import { mcpRunCommand, mcpSetupCommand } from './commands/mcp.js';
 const program = new Command();
 program
     .name('nexusflow')
@@ -222,5 +223,31 @@ program
         process.exit(1);
     }
 });
+const mcp = program.command('mcp').description('Manage the NexusFlow MCP Server for AI assistants');
+mcp
+    .command('run')
+    .description('Start the NexusFlow MCP Server (typically called automatically by AI assistants)')
+    .argument('[workspace]', 'Path to workspace (auto-detects from CWD)')
+    .action(async (workspace) => {
+    try {
+        await mcpRunCommand(workspace);
+    }
+    catch (error) {
+        console.error(error);
+        process.exit(1);
+    }
+});
+mcp
+    .command('setup')
+    .description('Automatically configure your AI environments (Claude Desktop, Cursor, VS Code) to use the NexusFlow MCP Server')
+    .action(async () => {
+    try {
+        await mcpSetupCommand();
+    }
+    catch (error) {
+        console.error(error);
+        process.exit(1);
+    }
+});
 program.parse();
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/mcp/server.d.ts

@@ -0,0 +1,2 @@
+export declare function startMcpServer(workspacePath?: string): Promise<void>;
+//# sourceMappingURL=server.d.ts.map

package/dist/mcp/server.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/mcp/server.ts"],"names":[],"mappings":"AAYA,wBAAsB,cAAc,CAAC,aAAa,CAAC,EAAE,MAAM,iBA8K1D"}

package/dist/mcp/server.js

@@ -0,0 +1,172 @@
+import { Server } from '@modelcontextprotocol/sdk/server/index.js';
+import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
+import { CallToolRequestSchema, ListToolsRequestSchema, } from '@modelcontextprotocol/sdk/types.js';
+import { execa } from 'execa';
+import * as fs from 'node:fs/promises';
+import * as path from 'node:path';
+import { loadConfig } from '../core/config.js';
+import { loadFeatureConfig } from '../core/workspace.js';
+export async function startMcpServer(workspacePath) {
+    const server = new Server({
+        name: 'nexusflow-mcp',
+        version: '0.1.2',
+    }, {
+        capabilities: {
+            tools: {},
+        },
+    });
+    server.setRequestHandler(ListToolsRequestSchema, async () => {
+        return {
+            tools: [
+                {
+                    name: 'search_workspace',
+                    description: 'Search for a string or regex across all repositories in the NexusFlow workspace. Extremely fast and useful for finding where a specific variable, function, or concept is used across microservices.',
+                    inputSchema: {
+                        type: 'object',
+                        properties: {
+                            query: {
+                                type: 'string',
+                                description: 'The search query or regular expression',
+                            },
+                            workspaceId: {
+                                type: 'string',
+                                description: 'Optional ID/branchName of the workspace to search. If omitted, uses the currently active workspace.',
+                            },
+                        },
+                        required: ['query'],
+                    },
+                },
+                {
+                    name: 'get_service_logs',
+                    description: 'Get the recent logs for a specific running service in the workspace to debug runtime issues.',
+                    inputSchema: {
+                        type: 'object',
+                        properties: {
+                            serviceName: {
+                                type: 'string',
+                                description: 'The name of the service to fetch logs for (e.g. "frontend", "backend-api")',
+                            },
+                            lines: {
+                                type: 'number',
+                                description: 'Number of lines to fetch. Default 50.',
+                            },
+                            workspaceId: {
+                                type: 'string',
+                                description: 'Optional ID/branchName of the workspace. If omitted, uses the currently active workspace.',
+                            },
+                        },
+                        required: ['serviceName'],
+                    },
+                },
+            ],
+        };
+    });
+    server.setRequestHandler(CallToolRequestSchema, async (request) => {
+        const { name, arguments: args } = request.params;
+        const config = await loadConfig();
+        // Resolve workspace path
+        let resolvedWorkspacePath = workspacePath;
+        if (!resolvedWorkspacePath) {
+            if (args && typeof args === 'object' && 'workspaceId' in args && typeof args.workspaceId === 'string') {
+                resolvedWorkspacePath = path.join(config.workspacesDir, args.workspaceId);
+            }
+            else {
+                // Fallback to CWD
+                resolvedWorkspacePath = process.cwd();
+            }
+        }
+        if (name === 'search_workspace') {
+            const query = args.query;
+            try {
+                const feature = await loadFeatureConfig(resolvedWorkspacePath);
+                if (!feature) {
+                    throw new Error(`Workspace not found at ${resolvedWorkspacePath}. Make sure you are in a NexusFlow workspace or provide a valid workspaceId.`);
+                }
+                let allResults = '';
+                for (const repoPath of feature.repos) {
+                    const repoName = path.basename(repoPath);
+                    const worktreePath = path.join(resolvedWorkspacePath, repoName);
+                    try {
+                        await fs.access(worktreePath);
+                        const { stdout } = await execa('git', ['grep', '-n', '-I', query], { cwd: worktreePath, reject: false });
+                        if (stdout) {
+                            const lines = stdout.split('\n').map(line => `[${repoName}] ${line}`);
+                            allResults += lines.join('\n') + '\n';
+                        }
+                    }
+                    catch (e) {
+                        if (e.exitCode !== 1) {
+                            console.error(`Error searching in ${repoName}:`, e);
+                        }
+                    }
+                }
+                return {
+                    content: [
+                        {
+                            type: 'text',
+                            text: allResults || 'No results found across the workspace repositories.',
+                        },
+                    ],
+                };
+            }
+            catch (error) {
+                return {
+                    content: [
+                        {
+                            type: 'text',
+                            text: `Error searching workspace: ${error.message}`,
+                        },
+                    ],
+                    isError: true,
+                };
+            }
+        }
+        if (name === 'get_service_logs') {
+            const serviceName = args.serviceName;
+            const lines = args.lines || 50;
+            try {
+                const logFilePath = path.join(resolvedWorkspacePath, '.nexusflow-logs', `${serviceName}.log`);
+                try {
+                    await fs.access(logFilePath);
+                }
+                catch {
+                    return {
+                        content: [
+                            {
+                                type: 'text',
+                                text: `Log file for service "${serviceName}" not found. Ensure the service is running via "nexusflow start".`,
+                            },
+                        ],
+                        isError: true,
+                    };
+                }
+                const content = await fs.readFile(logFilePath, 'utf8');
+                const logLines = content.split('\n');
+                const tail = logLines.slice(-lines).join('\n');
+                return {
+                    content: [
+                        {
+                            type: 'text',
+                            text: tail || '(empty log)',
+                        },
+                    ],
+                };
+            }
+            catch (error) {
+                return {
+                    content: [
+                        {
+                            type: 'text',
+                            text: `Error reading logs: ${error.message}`,
+                        },
+                    ],
+                    isError: true,
+                };
+            }
+        }
+        throw new Error(`Tool not found: ${name}`);
+    });
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+}
+//# sourceMappingURL=server.js.map

package/dist/mcp/server.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"server.js","sourceRoot":"","sources":["../../src/mcp/server.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,2CAA2C,CAAC;AACnE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EACL,qBAAqB,EACrB,sBAAsB,GACvB,MAAM,oCAAoC,CAAC;AAC5C,OAAO,EAAE,KAAK,EAAE,MAAM,OAAO,CAAC;AAC9B,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAC/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AAEzD,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,aAAsB;IACzD,MAAM,MAAM,GAAG,IAAI,MAAM,CACvB;QACE,IAAI,EAAE,eAAe;QACrB,OAAO,EAAE,OAAO;KACjB,EACD;QACE,YAAY,EAAE;YACZ,KAAK,EAAE,EAAE;SACV;KACF,CACF,CAAC;IAEF,MAAM,CAAC,iBAAiB,CAAC,sBAAsB,EAAE,KAAK,IAAI,EAAE;QAC1D,OAAO;YACL,KAAK,EAAE;gBACL;oBACE,IAAI,EAAE,kBAAkB;oBACxB,WAAW,EAAE,sMAAsM;oBACnN,WAAW,EAAE;wBACX,IAAI,EAAE,QAAQ;wBACd,UAAU,EAAE;4BACV,KAAK,EAAE;gCACL,IAAI,EAAE,QAAQ;gCACd,WAAW,EAAE,wCAAwC;6BACtD;4BACD,WAAW,EAAE;gCACX,IAAI,EAAE,QAAQ;gCACd,WAAW,EAAE,qGAAqG;6BACnH;yBACF;wBACD,QAAQ,EAAE,CAAC,OAAO,CAAC;qBACpB;iBACF;gBACD;oBACE,IAAI,EAAE,kBAAkB;oBACxB,WAAW,EAAE,8FAA8F;oBAC3G,WAAW,EAAE;wBACX,IAAI,EAAE,QAAQ;wBACd,UAAU,EAAE;4BACV,WAAW,EAAE;gCACX,IAAI,EAAE,QAAQ;gCACd,WAAW,EAAE,4EAA4E;6BAC1F;4BACD,KAAK,EAAE;gCACL,IAAI,EAAE,QAAQ;gCACd,WAAW,EAAE,uCAAuC;6BACrD;4BACD,WAAW,EAAE;gCACX,IAAI,EAAE,QAAQ;gCACd,WAAW,EAAE,2FAA2F;6BACzG;yBACF;wBACD,QAAQ,EAAE,CAAC,aAAa,CAAC;qBAC1B;iBACF;aACF;SACF,CAAC;IACJ,CAAC,CAAC,CAAC;IAEH,MAAM,CAAC,iBAAiB,CAAC,qBAAqB,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;QAChE,MAAM,EAAE,IAAI,EAAE,SAAS,EAAE,IAAI,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC;QACjD,MAAM,MAAM,GAAG,MAAM,UAAU,EAAE,CAAC;QAElC,yBAAyB;QACzB,IAAI,qBAAqB,GAAG,aAAa,CAAC;QAC1C,IAAI,CAAC,qBAAqB,EAAE,CAAC;YAC3B,IAAI,IAAI,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,aAAa,IAAI,IAAI,IAAI,OAAO,IAAI,CAAC,WAAW,KAAK,QAAQ,EAAE,CAAC;gBACtG,qBAAqB,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,IAAI,CAAC,WAAW,CAAC,CAAC;YAC5E,CAAC;iBAAM,CAAC;gBACN,kBAAkB;gBAClB,qBAAqB,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;YACxC,CAAC;QACH,CAAC;QAED,IAAI,IAAI,KAAK,kBAAkB,EAAE,CAAC;YAChC,MAAM,KAAK,GAAI,IAAY,CAAC,KAAK,CAAC;YAClC,IAAI,CAAC;gBACH,MAAM,OAAO,GAAG,MAAM,iBAAiB,CAAC,qBAAqB,CAAC,CAAC;gBAC/D,IAAI,CAAC,OAAO,EAAE,CAAC;oBACb,MAAM,IAAI,KAAK,CAAC,0BAA0B,qBAAqB,8EAA8E,CAAC,CAAC;gBACjJ,CAAC;gBAED,IAAI,UAAU,GAAG,EAAE,CAAC;gBACpB,KAAK,MAAM,QAAQ,IAAI,OAAO,CAAC,KAAK,EAAE,CAAC;oBACrC,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;oBACzC,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,qBAAqB,EAAE,QAAQ,CAAC,CAAC;oBAEhE,IAAI,CAAC;wBACH,MAAM,EAAE,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC;wBAC9B,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,KAAK,CAAC,KAAK,EAAE,CAAC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,EAAE,EAAE,GAAG,EAAE,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC,CAAC;wBACzG,IAAI,MAAM,EAAE,CAAC;4BACX,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,QAAQ,KAAK,IAAI,EAAE,CAAC,CAAC;4BACtE,UAAU,IAAI,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC;wBACxC,CAAC;oBACH,CAAC;oBAAC,OAAO,CAAM,EAAE,CAAC;wBAChB,IAAI,CAAC,CAAC,QAAQ,KAAK,CAAC,EAAE,CAAC;4BACrB,OAAO,CAAC,KAAK,CAAC,sBAAsB,QAAQ,GAAG,EAAE,CAAC,CAAC,CAAC;wBACtD,CAAC;oBACH,CAAC;gBACH,CAAC;gBAED,OAAO;oBACL,OAAO,EAAE;wBACP;4BACE,IAAI,EAAE,MAAM;4BACZ,IAAI,EAAE,UAAU,IAAI,qDAAqD;yBAC1E;qBACF;iBACF,CAAC;YACJ,CAAC;YAAC,OAAO,KAAU,EAAE,CAAC;gBACpB,OAAO;oBACL,OAAO,EAAE;wBACP;4BACE,IAAI,EAAE,MAAM;4BACZ,IAAI,EAAE,8BAA8B,KAAK,CAAC,OAAO,EAAE;yBACpD;qBACF;oBACD,OAAO,EAAE,IAAI;iBACd,CAAC;YACJ,CAAC;QACH,CAAC;QAED,IAAI,IAAI,KAAK,kBAAkB,EAAE,CAAC;YAChC,MAAM,WAAW,GAAI,IAAY,CAAC,WAAW,CAAC;YAC9C,MAAM,KAAK,GAAI,IAAY,CAAC,KAAK,IAAI,EAAE,CAAC;YAExC,IAAI,CAAC;gBACH,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,qBAAqB,EAAE,iBAAiB,EAAE,GAAG,WAAW,MAAM,CAAC,CAAC;gBAE9F,IAAI,CAAC;oBACH,MAAM,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;gBAC/B,CAAC;gBAAC,MAAM,CAAC;oBACP,OAAO;wBACL,OAAO,EAAE;4BACP;gCACE,IAAI,EAAE,MAAM;gCACZ,IAAI,EAAE,yBAAyB,WAAW,mEAAmE;6BAC9G;yBACF;wBACD,OAAO,EAAE,IAAI;qBACd,CAAC;gBACJ,CAAC;gBAED,MAAM,OAAO,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC,CAAC;gBACvD,MAAM,QAAQ,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;gBACrC,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;gBAE/C,OAAO;oBACL,OAAO,EAAE;wBACP;4BACE,IAAI,EAAE,MAAM;4BACZ,IAAI,EAAE,IAAI,IAAI,aAAa;yBAC5B;qBACF;iBACF,CAAC;YACJ,CAAC;YAAC,OAAO,KAAU,EAAE,CAAC;gBACpB,OAAO;oBACL,OAAO,EAAE;wBACP;4BACE,IAAI,EAAE,MAAM;4BACZ,IAAI,EAAE,uBAAuB,KAAK,CAAC,OAAO,EAAE;yBAC7C;qBACF;oBACD,OAAO,EAAE,IAAI;iBACd,CAAC;YACJ,CAAC;QACH,CAAC;QAED,MAAM,IAAI,KAAK,CAAC,mBAAmB,IAAI,EAAE,CAAC,CAAC;IAC7C,CAAC,CAAC,CAAC;IAEH,MAAM,SAAS,GAAG,IAAI,oBAAoB,EAAE,CAAC;IAC7C,MAAM,MAAM,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;AAClC,CAAC"}

package/dist/server.js

@@ -468,21 +468,21 @@ app.post('/api/workspace/:id/resume', async (c) => {
             }
         }
         else {
-            // Fallback to continue command
+            // Fallback to start command (since there's no existing session for this workspace)
             if (selectedAssistant === 'antigravity') {
-                resumeCommand = 'agy --continue';
+                resumeCommand = 'agy';
             }
             else if (selectedAssistant === 'claude') {
-                resumeCommand = 'claude --continue';
+                resumeCommand = 'claude';
             }
             else if (selectedAssistant === 'codex') {
-                resumeCommand = 'codex resume --last';
+                resumeCommand = 'codex';
             }
             else if (selectedAssistant === 'copilot') {
-                resumeCommand = 'copilot --continue';
+                resumeCommand = 'copilot';
             }
             else {
-                resumeCommand = 'agy --continue';
+                resumeCommand = 'agy';
             }
         }
         // Open in editor if command is provided

package/dist/server.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mrpatronz/nexusflow",
-  "version": "0.1.2",
+  "version": "0.1.3",
   "description": "Combine multiple repos into a workspace with rich AI assistant context",
   "type": "module",
   "main": "dist/index.js",
@@ -33,6 +33,7 @@
   "dependencies": {
     "@hono/node-server": "^2.0.4",
     "@inquirer/prompts": "^7.0.0",
+    "@modelcontextprotocol/sdk": "^1.29.0",
     "chalk": "^5.3.0",
     "commander": "^13.0.0",
     "execa": "^9.5.0",

package/src/commands/mcp.ts

@@ -0,0 +1,92 @@
+import * as os from 'node:os';
+import * as path from 'node:path';
+import * as fs from 'node:fs/promises';
+import chalk from 'chalk';
+import { startMcpServer } from '../mcp/server.js';
+
+export async function mcpRunCommand(workspace?: string) {
+  // If not provided, it attempts to use process.cwd() or waits for workspaceId in MCP calls.
+  // The startMcpServer function handles this.
+  await startMcpServer(workspace);
+}
+
+export async function mcpSetupCommand() {
+  console.log(chalk.blue.bold('\nSetting up NexusFlow MCP Server for AI Assistants...'));
+  
+  const isWin = os.platform() === 'win32';
+  const isMac = os.platform() === 'darwin';
+  const home = os.homedir();
+
+  const configPaths = [
+    // Cursor
+    path.join(home, '.cursor', 'mcp.json'),
+    // VS Code Insiders (for Antigravity/Copilot)
+    isWin 
+      ? path.join(home, 'AppData', 'Roaming', 'Code - Insiders', 'User', 'mcp.json')
+      : isMac 
+        ? path.join(home, 'Library', 'Application Support', 'Code - Insiders', 'User', 'mcp.json')
+        : path.join(home, '.config', 'Code - Insiders', 'User', 'mcp.json'),
+    // VS Code (Stable)
+    isWin 
+      ? path.join(home, 'AppData', 'Roaming', 'Code', 'User', 'mcp.json')
+      : isMac 
+        ? path.join(home, 'Library', 'Application Support', 'Code', 'User', 'mcp.json')
+        : path.join(home, '.config', 'Code', 'User', 'mcp.json'),
+    // Claude Desktop
+    isWin
+      ? path.join(home, 'AppData', 'Roaming', 'Claude', 'claude_desktop_config.json')
+      : isMac
+        ? path.join(home, 'Library', 'Application Support', 'Claude', 'claude_desktop_config.json')
+        : ''
+  ].filter(Boolean);
+
+  const mcpConfig = {
+    command: 'npx',
+    args: ['-y', '@mrpatronz/nexusflow', 'mcp', 'run']
+  };
+
+  let updatedCount = 0;
+
+  for (const configPath of configPaths) {
+    if (!configPath) continue;
+    try {
+      let configData: any = { mcpServers: {} };
+      
+      try {
+        await fs.access(configPath);
+        const raw = await fs.readFile(configPath, 'utf8');
+        // Handle empty or invalid files gracefully
+        if (raw.trim()) {
+            configData = JSON.parse(raw);
+        }
+        if (!configData.mcpServers) configData.mcpServers = {};
+      } catch (e) {
+        // File doesn't exist, we will create it if the directory exists
+        const dir = path.dirname(configPath);
+        try {
+          await fs.access(dir);
+        } catch {
+          // Directory doesn't exist, skip this environment
+          continue;
+        }
+      }
+
+      configData.mcpServers['nexusflow'] = mcpConfig;
+
+      await fs.writeFile(configPath, JSON.stringify(configData, null, 2), 'utf8');
+      console.log(chalk.green(`  ✓ Configured MCP in: ${configPath}`));
+      updatedCount++;
+    } catch (e: any) {
+      console.log(chalk.gray(`  - Skipped ${configPath} (${e.message})`));
+    }
+  }
+
+  if (updatedCount > 0) {
+    console.log(chalk.green.bold(`\nSuccessfully configured ${updatedCount} AI environments!`));
+    console.log(chalk.white('You may need to restart your editor or Claude Desktop for the changes to take effect.'));
+  } else {
+    console.log(chalk.yellow('\nCould not find any standard configuration files to update.'));
+    console.log('You can manually add this configuration to your mcp.json:');
+    console.log(JSON.stringify({ mcpServers: { nexusflow: mcpConfig } }, null, 2));
+  }
+}

package/src/core/workspace.ts

@@ -7,6 +7,7 @@
 
 import * as fs from 'node:fs/promises';
 import * as path from 'node:path';
+import { execa } from 'execa';
 
 import type { Feature, RepoInfo } from '../types.js';
 import { createWorktree } from './worktree.js';
@@ -47,6 +48,19 @@ export async function createWorkspace(
   // Ensure the workspace directory exists.
   await fs.mkdir(workspacePath, { recursive: true });
 
+  // Initialize git repository at workspace root to prevent AI assistants (like Claude)
+  // from climbing up to parent git repositories (main/master).
+  try {
+    await execa('git', ['init'], { cwd: workspacePath });
+
+    // Write a .gitignore to ignore the sub-repositories
+    const gitignoreContent = repos.map((repo) => `/${repo.name}/`).join('\n') + '\n';
+    await fs.writeFile(path.join(workspacePath, '.gitignore'), gitignoreContent, 'utf-8');
+  } catch (error) {
+    // Silently ignore or log warning if git init fails
+    console.warn('Warning: Failed to initialize git repository at workspace root:', error);
+  }
+
   // Create a worktree for each repo inside the workspace.
   for (const repo of repos) {
     const worktreeTarget = path.join(workspacePath, repo.name);

package/src/core/worktree.ts

@@ -23,13 +23,30 @@ export async function createWorktree(
   branchName: string,
   baseBranch: string,
 ): Promise<void> {
+  let fetched = false;
   // Fetch latest remote state.
-  await execa('git', ['fetch', 'origin'], { cwd: repoPath });
+  try {
+    await execa('git', ['fetch', 'origin'], { cwd: repoPath });
+    fetched = true;
+  } catch {
+    // Silently ignore fetch failures (e.g., offline or no remote origin)
+  }
 
-  // Create the worktree with a new branch based on the remote base branch.
+  // Determine starting point: remote branch if fetched successfully and exists, else local branch.
+  let startPoint = baseBranch;
+  if (fetched) {
+    try {
+      await execa('git', ['rev-parse', '--verify', `origin/${baseBranch}`], { cwd: repoPath });
+      startPoint = `origin/${baseBranch}`;
+    } catch {
+      // remote tracking branch does not exist, fallback to local branch
+    }
+  }
+
+  // Create the worktree with a new branch based on the start point.
   await execa(
     'git',
-    ['worktree', 'add', targetPath, '-b', branchName, `origin/${baseBranch}`],
+    ['worktree', 'add', targetPath, '-b', branchName, startPoint],
     { cwd: repoPath },
   );
 }

package/src/generators/base.ts

@@ -176,6 +176,14 @@ Once you have created \`nexusflow-overview.md\` and compiled your questions, ask
 
 ## Guidelines
 
+- **Multi-Repo Workspace Structure**: This workspace is a multi-repository developer environment where each project subdirectory (e.g. \`my-api\`, \`my-frontend\`) is a separate Git worktree checked out on the feature branch \`\${feature.branchName}\`.
+  - **All code changes** must be made within the appropriate project subdirectories.
+  - **Git commands** (like \`git status\`, \`git add\`, \`git commit\`, \`git push\`) must be run inside the specific project subdirectories (e.g. \`cd my-api && git commit -m "..."\`), NOT in the workspace root.
+  - **Project commands** (like \`npm install\`, \`npm run build\`, \`npm run test\`) must be run inside the project subdirectories.
+  - **Global helpers**: Alternatively, you can run NexusFlow CLI commands from the workspace root:
+    - \`nexusflow diff\` — view changes across all sub-repositories.
+    - \`nexusflow commit\` — commit and push changes across modified repositories.
+    - \`nexusflow sync\` — rebase all repositories with their default base branches.
 - **Workspace Knowledge**: Read \`nexusflow-knowledge.md\` at the start of every session. It serves as the persistent memory for this feature. Before ending your session, append significant architecture decisions, discovered gotchas, and checklist progress to \`nexusflow-knowledge.md\`. Never delete or overwrite existing knowledge/decisions — only append.
 - **Implementation Plan**: Refer to \`nexusflow-plan.md\` for the suggested implementation order based on dependency analysis. Follow the phased implementation order to avoid blocking yourself on cross-repo dependencies.
 - Read each project's existing \`README.md\` and any doc files before proposing changes.

package/src/index.ts

@@ -23,7 +23,7 @@ import { uiCommand } from './commands/ui.js';
 import { syncCommand } from './commands/sync.js';
 import { commitCommand } from './commands/commit.js';
 import { diffCommand } from './commands/diff.js';
-
+import { mcpRunCommand, mcpSetupCommand } from './commands/mcp.js';
 
 const program = new Command();
 
@@ -233,5 +233,32 @@ program
     }
   });
 
+const mcp = program.command('mcp').description('Manage the NexusFlow MCP Server for AI assistants');
+
+mcp
+  .command('run')
+  .description('Start the NexusFlow MCP Server (typically called automatically by AI assistants)')
+  .argument('[workspace]', 'Path to workspace (auto-detects from CWD)')
+  .action(async (workspace?: string) => {
+    try {
+      await mcpRunCommand(workspace);
+    } catch (error) {
+      console.error(error);
+      process.exit(1);
+    }
+  });
+
+mcp
+  .command('setup')
+  .description('Automatically configure your AI environments (Claude Desktop, Cursor, VS Code) to use the NexusFlow MCP Server')
+  .action(async () => {
+    try {
+      await mcpSetupCommand();
+    } catch (error) {
+      console.error(error);
+      process.exit(1);
+    }
+  });
+
 program.parse();
 

package/src/mcp/server.ts

@@ -0,0 +1,187 @@
+import { Server } from '@modelcontextprotocol/sdk/server/index.js';
+import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
+import {
+  CallToolRequestSchema,
+  ListToolsRequestSchema,
+} from '@modelcontextprotocol/sdk/types.js';
+import { execa } from 'execa';
+import * as fs from 'node:fs/promises';
+import * as path from 'node:path';
+import { loadConfig } from '../core/config.js';
+import { loadFeatureConfig } from '../core/workspace.js';
+
+export async function startMcpServer(workspacePath?: string) {
+  const server = new Server(
+    {
+      name: 'nexusflow-mcp',
+      version: '0.1.2',
+    },
+    {
+      capabilities: {
+        tools: {},
+      },
+    }
+  );
+
+  server.setRequestHandler(ListToolsRequestSchema, async () => {
+    return {
+      tools: [
+        {
+          name: 'search_workspace',
+          description: 'Search for a string or regex across all repositories in the NexusFlow workspace. Extremely fast and useful for finding where a specific variable, function, or concept is used across microservices.',
+          inputSchema: {
+            type: 'object',
+            properties: {
+              query: {
+                type: 'string',
+                description: 'The search query or regular expression',
+              },
+              workspaceId: {
+                type: 'string',
+                description: 'Optional ID/branchName of the workspace to search. If omitted, uses the currently active workspace.',
+              },
+            },
+            required: ['query'],
+          },
+        },
+        {
+          name: 'get_service_logs',
+          description: 'Get the recent logs for a specific running service in the workspace to debug runtime issues.',
+          inputSchema: {
+            type: 'object',
+            properties: {
+              serviceName: {
+                type: 'string',
+                description: 'The name of the service to fetch logs for (e.g. "frontend", "backend-api")',
+              },
+              lines: {
+                type: 'number',
+                description: 'Number of lines to fetch. Default 50.',
+              },
+              workspaceId: {
+                type: 'string',
+                description: 'Optional ID/branchName of the workspace. If omitted, uses the currently active workspace.',
+              },
+            },
+            required: ['serviceName'],
+          },
+        },
+      ],
+    };
+  });
+
+  server.setRequestHandler(CallToolRequestSchema, async (request) => {
+    const { name, arguments: args } = request.params;
+    const config = await loadConfig();
+
+    // Resolve workspace path
+    let resolvedWorkspacePath = workspacePath;
+    if (!resolvedWorkspacePath) {
+      if (args && typeof args === 'object' && 'workspaceId' in args && typeof args.workspaceId === 'string') {
+        resolvedWorkspacePath = path.join(config.workspacesDir, args.workspaceId);
+      } else {
+        // Fallback to CWD
+        resolvedWorkspacePath = process.cwd();
+      }
+    }
+
+    if (name === 'search_workspace') {
+      const query = (args as any).query;
+      try {
+        const feature = await loadFeatureConfig(resolvedWorkspacePath);
+        if (!feature) {
+          throw new Error(`Workspace not found at ${resolvedWorkspacePath}. Make sure you are in a NexusFlow workspace or provide a valid workspaceId.`);
+        }
+
+        let allResults = '';
+        for (const repoPath of feature.repos) {
+          const repoName = path.basename(repoPath);
+          const worktreePath = path.join(resolvedWorkspacePath, repoName);
+          
+          try {
+            await fs.access(worktreePath);
+            const { stdout } = await execa('git', ['grep', '-n', '-I', query], { cwd: worktreePath, reject: false });
+            if (stdout) {
+              const lines = stdout.split('\n').map(line => `[${repoName}] ${line}`);
+              allResults += lines.join('\n') + '\n';
+            }
+          } catch (e: any) {
+            if (e.exitCode !== 1) {
+              console.error(`Error searching in ${repoName}:`, e);
+            }
+          }
+        }
+
+        return {
+          content: [
+            {
+              type: 'text',
+              text: allResults || 'No results found across the workspace repositories.',
+            },
+          ],
+        };
+      } catch (error: any) {
+        return {
+          content: [
+            {
+              type: 'text',
+              text: `Error searching workspace: ${error.message}`,
+            },
+          ],
+          isError: true,
+        };
+      }
+    }
+
+    if (name === 'get_service_logs') {
+      const serviceName = (args as any).serviceName;
+      const lines = (args as any).lines || 50;
+
+      try {
+        const logFilePath = path.join(resolvedWorkspacePath, '.nexusflow-logs', `${serviceName}.log`);
+        
+        try {
+          await fs.access(logFilePath);
+        } catch {
+          return {
+            content: [
+              {
+                type: 'text',
+                text: `Log file for service "${serviceName}" not found. Ensure the service is running via "nexusflow start".`,
+              },
+            ],
+            isError: true,
+          };
+        }
+
+        const content = await fs.readFile(logFilePath, 'utf8');
+        const logLines = content.split('\n');
+        const tail = logLines.slice(-lines).join('\n');
+
+        return {
+          content: [
+            {
+              type: 'text',
+              text: tail || '(empty log)',
+            },
+          ],
+        };
+      } catch (error: any) {
+        return {
+          content: [
+            {
+              type: 'text',
+              text: `Error reading logs: ${error.message}`,
+            },
+          ],
+          isError: true,
+        };
+      }
+    }
+
+    throw new Error(`Tool not found: ${name}`);
+  });
+
+  const transport = new StdioServerTransport();
+  await server.connect(transport);
+}

package/src/server.ts

@@ -527,17 +527,17 @@ app.post('/api/workspace/:id/resume', async (c) => {
         resumeCommand = `copilot --resume ${selectedSessionId}`;
       }
     } else {
-      // Fallback to continue command
+      // Fallback to start command (since there's no existing session for this workspace)
       if (selectedAssistant === 'antigravity') {
-        resumeCommand = 'agy --continue';
+        resumeCommand = 'agy';
       } else if (selectedAssistant === 'claude') {
-        resumeCommand = 'claude --continue';
+        resumeCommand = 'claude';
       } else if (selectedAssistant === 'codex') {
-        resumeCommand = 'codex resume --last';
+        resumeCommand = 'codex';
       } else if (selectedAssistant === 'copilot') {
-        resumeCommand = 'copilot --continue';
+        resumeCommand = 'copilot';
       } else {
-        resumeCommand = 'agy --continue';
+        resumeCommand = 'agy';
       }
     }