npm - @morscherlab/mld-sdk - Versions diffs - 0.7.6 → 0.7.7 - Mend

@morscherlab/mld-sdk 0.7.6 → 0.7.7

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Files changed (19) hide show

package/dist/components/AutoGroupModal.vue.js +2 -2
package/dist/components/AutoGroupModal.vue.js.map +1 -1
package/dist/components/NumberInput.vue.js +53 -50
package/dist/components/NumberInput.vue.js.map +1 -1
package/dist/composables/useAutoGroup.d.ts +1 -0
package/dist/composables/useAutoGroup.js +24 -4
package/dist/composables/useAutoGroup.js.map +1 -1
package/dist/styles.css +46 -18
package/package.json +1 -1
package/src/__tests__/composables/useAutoGroup.test.ts +133 -0
package/src/components/AutoGroupModal.story.vue +100 -32
package/src/components/AutoGroupModal.vue +2 -2
package/src/components/NumberInput.vue +33 -31
package/src/composables/useAutoGroup.ts +34 -5
package/src/styles/components/app-sidebar.css +1 -1
package/src/styles/components/auto-group-modal.css +5 -4
package/src/styles/components/modal.css +6 -0
package/src/styles/components/number-input.css +7 -5
package/src/styles/components/step-wizard.css +5 -0

package/dist/components/AutoGroupModal.vue.js CHANGED Viewed

@@ -101,7 +101,7 @@ const _sfc_main = /* @__PURE__ */ defineComponent({
           autoGroup.rawText.value = props.samples.join("\n");
         }
       }
-    });
+    }, { immediate: true });
     const allSteps = [
       { id: "input", label: "Input" },
       { id: "outliers", label: "Outliers" },
@@ -297,7 +297,7 @@ const _sfc_main = /* @__PURE__ */ defineComponent({
               "step-outliers": withCtx(() => [
                 createElementVNode("div", _hoisted_10, [
                   createElementVNode("div", _hoisted_11, [
-                    createTextVNode(toDisplayString(unref(autoGroup).outliers.value.length) + " of " + toDisplayString(unref(autoGroup).samples.value.length) + " samples have irregular structure (fewer than " + toDisplayString(unref(autoGroup).minFieldCount.value) + " fields, delimiter ", 1),
+                    createTextVNode(toDisplayString(unref(autoGroup).outliers.value.length) + " of " + toDisplayString(unref(autoGroup).samples.value.length) + " samples have irregular structure (fewer than " + toDisplayString(unref(autoGroup).dominantFieldCount.value) + " fields, delimiter ", 1),
                     createElementVNode("code", null, toDisplayString(unref(autoGroup).delimiter.value), 1),
                     _cache[14] || (_cache[14] = createTextVNode(") ", -1))
                   ]),

package/dist/components/AutoGroupModal.vue.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"AutoGroupModal.vue.js","sources":["../../src/components/AutoGroupModal.vue"],"sourcesContent":["<script setup lang=\"ts\">\nimport { ref, computed, watch } from 'vue'\nimport BaseModal from './BaseModal.vue'\nimport BaseButton from './BaseButton.vue'\nimport BaseInput from './BaseInput.vue'\nimport StepWizard from './StepWizard.vue'\nimport { useAutoGroup, parseCSV } from '../composables/useAutoGroup'\nimport type { WizardStep } from '../types/components'\nimport type { AutoGroupResult } from '../types/auto-group'\n\ninterface Props {\n modelValue: boolean\n samples?: string[]\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n samples: () => [],\n})\n\nconst emit = defineEmits<{\n 'update:modelValue': [value: boolean]\n 'apply': [result: AutoGroupResult]\n}>()\n\nconst autoGroup = useAutoGroup()\nconst wizardRef = ref<InstanceType<typeof StepWizard> \| null>(null)\nconst currentStep = ref(0)\nconst isDragOver = ref(false)\nconst csvFileName = ref('')\n\n// Pre-fill from props\nwatch(() => props.modelValue, (open) => {\n if (open) {\n autoGroup.reset()\n currentStep.value = 0\n csvFileName.value = ''\n if (props.samples.length > 0) {\n autoGroup.rawText.value = props.samples.join('\\n')\n }\n }\n})\n\n// Dynamic steps: skip outlier step when no outliers\nconst allSteps: WizardStep[] = [\n { id: 'input', label: 'Input' },\n { id: 'outliers', label: 'Outliers' },\n { id: 'fields', label: 'Fields' },\n { id: 'preview', label: 'Preview' },\n]\n\nconst dynamicSteps = computed<WizardStep[]>(() => {\n if (autoGroup.hasOutliers.value) {\n return allSteps\n }\n return allSteps.filter(s => s.id !== 'outliers')\n})\n\n// Map current step index to step ID\nconst currentStepId = computed(() => {\n const step = dynamicSteps.value[currentStep.value]\n return step?.id ?? 'input'\n})\n\n// Clamp step when dynamic steps change\nwatch(() => dynamicSteps.value.length, (newLen) => {\n if (currentStep.value >= newLen) {\n currentStep.value = newLen - 1\n }\n})\n\n// Step validity\nconst inputValid = computed(() => autoGroup.samples.value.length > 0)\nconst fieldsValid = computed(() => autoGroup.enabledFields.value.size > 0)\n\nwatch([inputValid, fieldsValid, dynamicSteps], () => {\n if (!wizardRef.value) return\n const steps = dynamicSteps.value\n for (let i = 0; i < steps.length; i++) {\n const id = steps[i].id\n if (id === 'input') wizardRef.value.setStepValid(i, inputValid.value)\n else if (id === 'outliers') wizardRef.value.setStepValid(i, true)\n else if (id === 'fields') wizardRef.value.setStepValid(i, fieldsValid.value)\n else if (id === 'preview') wizardRef.value.setStepValid(i, true)\n }\n}, { immediate: true })\n\n// Navigation\nfunction handleNext() {\n if (currentStepId.value === 'input') {\n autoGroup.parseInput()\n }\n // StepWizard handles the actual navigation via v-model\n}\n\nfunction handleApply() {\n emit('apply', autoGroup.result.value)\n emit('update:modelValue', false)\n}\n\nfunction handleCancel() {\n emit('update:modelValue', false)\n}\n\n// CSV file handling\nfunction handleFileDrop(event: DragEvent) {\n event.preventDefault()\n isDragOver.value = false\n const files = event.dataTransfer?.files\n if (files && files.length > 0) {\n processFile(files[0])\n }\n}\n\nfunction handleFileInput(event: Event) {\n const target = event.target as HTMLInputElement\n if (target.files && target.files.length > 0) {\n processFile(target.files[0])\n }\n}\n\nasync function processFile(file: File) {\n if (!file.name.endsWith('.csv') && !file.name.endsWith('.tsv')) return\n\n try {\n const text = await file.text()\n const parsed = parseCSV(text)\n autoGroup.inputMode.value = 'csv'\n autoGroup.csvData.value = parsed\n csvFileName.value = file.name\n } catch {\n // CSV parse error — stay in current state\n }\n}\n\nfunction clearCsvFile() {\n autoGroup.csvData.value = null\n autoGroup.inputMode.value = 'paste'\n csvFileName.value = ''\n}\n\n// Last step check\nconst isLastStep = computed(() => currentStep.value === dynamicSteps.value.length - 1)\nconst isFirstStep = computed(() => currentStep.value === 0)\n</script>\n\n<template>\n <BaseModal\n :model-value=\"modelValue\"\n title=\"Smart Group\"\n size=\"lg\"\n @update:model-value=\"emit('update:modelValue', $event)\"\n @close=\"handleCancel\"\n >\n <div class=\"mld-auto-group\">\n <StepWizard\n ref=\"wizardRef\"\n v-model=\"currentStep\"\n :steps=\"dynamicSteps\"\n :linear=\"true\"\n size=\"sm\"\n >\n <!-- Step: Input -->\n <template #step-input>\n <div class=\"mld-auto-group__input-step\">\n <!-- Mode toggle -->\n <div class=\"mld-auto-group__mode-toggle\">\n <BaseButton\n :variant=\"autoGroup.inputMode.value === 'paste' ? 'primary' : 'secondary'\"\n size=\"sm\"\n @click=\"autoGroup.inputMode.value = 'paste'\"\n >\n Paste\n </BaseButton>\n <BaseButton\n :variant=\"autoGroup.inputMode.value === 'csv' ? 'primary' : 'secondary'\"\n size=\"sm\"\n @click=\"autoGroup.inputMode.value = 'csv'\"\n >\n CSV\n </BaseButton>\n </div>\n\n <!-- Paste mode -->\n <div v-if=\"autoGroup.inputMode.value === 'paste'\" class=\"mld-auto-group__paste\">\n <textarea\n v-model=\"autoGroup.rawText.value\"\n class=\"mld-auto-group__textarea\"\n rows=\"12\"\n placeholder=\"Paste sample names, one per line...\"\n />\n <div v-if=\"autoGroup.samples.value.length > 0\" class=\"mld-auto-group__sample-count\">\n {{ autoGroup.samples.value.length }} samples\n </div>\n </div>\n\n <!-- CSV mode -->\n <div v-if=\"autoGroup.inputMode.value === 'csv'\" class=\"mld-auto-group__csv\">\n <div v-if=\"!autoGroup.csvData.value\"\n :class=\"[\n 'mld-auto-group__dropzone',\n isDragOver ? 'mld-auto-group__dropzone--dragover' : '',\n ]\"\n @drop=\"handleFileDrop\"\n @dragover.prevent=\"isDragOver = true\"\n @dragleave=\"isDragOver = false\"\n >\n <input\n type=\"file\"\n accept=\".csv,.tsv\"\n class=\"mld-auto-group__file-input\"\n @change=\"handleFileInput\"\n />\n <svg class=\"mld-auto-group__upload-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"1.5\" d=\"M9 17v-2m3 2v-4m3 4v-6m2 10H7a2 2 0 01-2-2V5a2 2 0 012-2h5.586a1 1 0 01.707.293l5.414 5.414a1 1 0 01.293.707V19a2 2 0 01-2 2z\" />\n </svg>\n <p class=\"mld-auto-group__upload-text\">\n <span class=\"mld-auto-group__upload-highlight\">Click to upload</span>\n or drag and drop a CSV file\n </p>\n </div>\n\n <div v-else class=\"mld-auto-group__file-info\">\n <svg class=\"mld-auto-group__file-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 12h6m-6 4h6m2 5H7a2 2 0 01-2-2V5a2 2 0 012-2h5.586a1 1 0 01.707.293l5.414 5.414a1 1 0 01.293.707V19a2 2 0 01-2 2z\" />\n </svg>\n <span class=\"mld-auto-group__file-name\">{{ csvFileName }}</span>\n <span class=\"mld-auto-group__file-rows\">{{ autoGroup.csvData.value.rows.length }} rows</span>\n <button type=\"button\" class=\"mld-auto-group__file-clear\" @click=\"clearCsvFile\">\n Change file\n </button>\n </div>\n </div>\n </div>\n </template>\n\n <!-- Step: Outliers -->\n <template #step-outliers>\n <div class=\"mld-auto-group__outlier-step\">\n <div class=\"mld-auto-group__outlier-banner\">\n {{ autoGroup.outliers.value.length }} of {{ autoGroup.samples.value.length }}\n samples have irregular structure\n (fewer than {{ autoGroup.minFieldCount.value }} fields, delimiter\n <code>{{ autoGroup.delimiter.value }}</code>)\n </div>\n\n <div class=\"mld-auto-group__outlier-batch\">\n <BaseButton size=\"sm\" variant=\"secondary\" @click=\"autoGroup.setAllOutlierActions('include')\">\n Include All\n </BaseButton>\n <BaseButton size=\"sm\" variant=\"secondary\" @click=\"autoGroup.setAllOutlierActions('exclude')\">\n Exclude All\n </BaseButton>\n </div>\n\n <div class=\"mld-auto-group__outlier-list\">\n <div\n v-for=\"outlier in autoGroup.outliers.value\"\n :key=\"outlier.index\"\n class=\"mld-auto-group__outlier-item\"\n >\n <div class=\"mld-auto-group__outlier-info\">\n <code class=\"mld-auto-group__outlier-name\">{{ outlier.sample }}</code>\n <span class=\"mld-auto-group__outlier-badge\">{{ outlier.fieldCount }} fields</span>\n </div>\n <div class=\"mld-auto-group__outlier-actions\">\n <button\n type=\"button\"\n :class=\"['mld-auto-group__action-btn', outlier.action === 'include' ? 'mld-auto-group__action-btn--active' : '']\"\n @click=\"autoGroup.setOutlierAction(outlier.index, 'include')\"\n >Include</button>\n <button\n type=\"button\"\n :class=\"['mld-auto-group__action-btn', outlier.action === 'exclude' ? 'mld-auto-group__action-btn--active mld-auto-group__action-btn--exclude' : '']\"\n @click=\"autoGroup.setOutlierAction(outlier.index, 'exclude')\"\n >Exclude</button>\n <button\n type=\"button\"\n :class=\"['mld-auto-group__action-btn', outlier.action === 'qc' ? 'mld-auto-group__action-btn--active mld-auto-group__action-btn--qc' : '']\"\n @click=\"autoGroup.setOutlierAction(outlier.index, 'qc')\"\n >QC</button>\n </div>\n </div>\n </div>\n </div>\n </template>\n\n <!-- Step: Fields -->\n <template #step-fields>\n <div class=\"mld-auto-group__field-step\">\n <div class=\"mld-auto-group__field-grid\">\n <div\n v-for=\"col in autoGroup.effectiveColumns.value\"\n :key=\"col.index\"\n :class=\"[\n 'mld-auto-group__field-card',\n autoGroup.enabledFields.value.has(col.index) ? 'mld-auto-group__field-card--enabled' : '',\n ]\"\n >\n <div class=\"mld-auto-group__field-header\">\n <label class=\"mld-auto-group__field-toggle\">\n <input\n type=\"checkbox\"\n :checked=\"autoGroup.enabledFields.value.has(col.index)\"\n @change=\"autoGroup.toggleField(col.index)\"\n />\n <span class=\"mld-auto-group__field-toggle-label\">Group by</span>\n </label>\n <span class=\"mld-auto-group__field-cardinality\">{{ col.cardinality }} unique</span>\n </div>\n\n <BaseInput\n :model-value=\"col.name\"\n placeholder=\"Field name...\"\n class=\"mld-auto-group__field-name-input\"\n @update:model-value=\"autoGroup.renameField(col.index, String($event ?? ''))\"\n />\n\n <div class=\"mld-auto-group__field-values\">\n <span\n v-for=\"val in col.uniqueValues.slice(0, 5)\"\n :key=\"val\"\n class=\"mld-auto-group__field-value\"\n >{{ val }}</span>\n <span\n v-if=\"col.uniqueValues.length > 5\"\n class=\"mld-auto-group__field-more\"\n >+{{ col.uniqueValues.length - 5 }} more</span>\n </div>\n </div>\n </div>\n\n <div v-if=\"autoGroup.enabledFields.value.size > 0\" class=\"mld-auto-group__field-summary\">\n Grouping by:\n <strong>{{\n autoGroup.effectiveColumns.value\n .filter(c => autoGroup.enabledFields.value.has(c.index))\n .map(c => c.name)\n .join(' / ')\n }}</strong>\n </div>\n\n <div v-if=\"autoGroup.enabledFields.value.size === 0\" class=\"mld-auto-group__field-warning\">\n Select at least one field for grouping\n </div>\n </div>\n </template>\n\n <!-- Step: Preview -->\n <template #step-preview>\n <div class=\"mld-auto-group__preview-step\">\n <div class=\"mld-auto-group__preview-summary\">\n <span class=\"mld-auto-group__preview-stat\">\n <strong>{{ autoGroup.groups.value.length }}</strong> groups\n </span>\n <span class=\"mld-auto-group__preview-stat\">\n <strong>{{ autoGroup.groups.value.reduce((sum, g) => sum + g.samples.length, 0) }}</strong> samples\n </span>\n <span v-if=\"autoGroup.excludedSamples.value.length > 0\" class=\"mld-auto-group__preview-stat mld-auto-group__preview-stat--excluded\">\n <strong>{{ autoGroup.excludedSamples.value.length }}</strong> excluded\n </span>\n </div>\n\n <div class=\"mld-auto-group__preview-groups\">\n <details\n v-for=\"group in autoGroup.groups.value\"\n :key=\"group.name\"\n class=\"mld-auto-group__preview-group\"\n >\n <summary class=\"mld-auto-group__preview-group-header\">\n <span\n class=\"mld-auto-group__preview-dot\"\n :style=\"{ backgroundColor: group.color }\"\n />\n <span class=\"mld-auto-group__preview-group-name\">{{ group.name }}</span>\n <span\n class=\"mld-auto-group__preview-group-count\"\n :style=\"{ backgroundColor: group.color + '20', color: group.color }\"\n >{{ group.samples.length }}</span>\n </summary>\n <div class=\"mld-auto-group__preview-samples\">\n <span\n v-for=\"sample in group.samples\"\n :key=\"sample\"\n class=\"mld-auto-group__preview-sample\"\n >{{ sample }}</span>\n </div>\n </details>\n </div>\n\n <div v-if=\"autoGroup.excludedSamples.value.length > 0\" class=\"mld-auto-group__preview-excluded\">\n <div class=\"mld-auto-group__preview-excluded-title\">Excluded Samples</div>\n <div class=\"mld-auto-group__preview-excluded-list\">\n <span\n v-for=\"sample in autoGroup.excludedSamples.value\"\n :key=\"sample\"\n class=\"mld-auto-group__preview-sample mld-auto-group__preview-sample--excluded\"\n >{{ sample }}</span>\n </div>\n </div>\n </div>\n </template>\n\n <!-- Custom navigation -->\n <template #navigation=\"{ goBack, goNext, canProceed }\">\n <div class=\"mld-auto-group__nav\">\n <BaseButton variant=\"secondary\" @click=\"handleCancel\">\n Cancel\n </BaseButton>\n <div style=\"flex: 1\" />\n <BaseButton\n v-if=\"!isFirstStep\"\n variant=\"secondary\"\n @click=\"goBack\"\n >\n Back\n </BaseButton>\n <BaseButton\n v-if=\"!isLastStep\"\n variant=\"primary\"\n :disabled=\"!canProceed\"\n @click=\"() => { handleNext(); goNext() }\"\n >\n Next\n </BaseButton>\n <BaseButton\n v-if=\"isLastStep\"\n variant=\"primary\"\n @click=\"handleApply\"\n >\n Apply\n </BaseButton>\n </div>\n </template>\n </StepWizard>\n </div>\n </BaseModal>\n</template>\n\n<style>\n@import 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1	+ {"version":3,"file":"AutoGroupModal.vue.js","sources":["../../src/components/AutoGroupModal.vue"],"sourcesContent":["<script setup lang=\"ts\">\nimport { ref, computed, watch } from 'vue'\nimport BaseModal from './BaseModal.vue'\nimport BaseButton from './BaseButton.vue'\nimport BaseInput from './BaseInput.vue'\nimport StepWizard from './StepWizard.vue'\nimport { useAutoGroup, parseCSV } from '../composables/useAutoGroup'\nimport type { WizardStep } from '../types/components'\nimport type { AutoGroupResult } from '../types/auto-group'\n\ninterface Props {\n modelValue: boolean\n samples?: string[]\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n samples: () => [],\n})\n\nconst emit = defineEmits<{\n 'update:modelValue': [value: boolean]\n 'apply': [result: AutoGroupResult]\n}>()\n\nconst autoGroup = useAutoGroup()\nconst wizardRef = ref<InstanceType<typeof StepWizard> \| null>(null)\nconst currentStep = ref(0)\nconst isDragOver = ref(false)\nconst csvFileName = ref('')\n\n// Pre-fill from props\nwatch(() => props.modelValue, (open) => {\n if (open) {\n autoGroup.reset()\n currentStep.value = 0\n csvFileName.value = ''\n if (props.samples.length > 0) {\n autoGroup.rawText.value = props.samples.join('\\n')\n }\n }\n}, { immediate: true })\n\n// Dynamic steps: skip outlier step when no outliers\nconst allSteps: WizardStep[] = [\n { id: 'input', label: 'Input' },\n { id: 'outliers', label: 'Outliers' },\n { id: 'fields', label: 'Fields' },\n { id: 'preview', label: 'Preview' },\n]\n\nconst dynamicSteps = computed<WizardStep[]>(() => {\n if (autoGroup.hasOutliers.value) {\n return allSteps\n }\n return allSteps.filter(s => s.id !== 'outliers')\n})\n\n// Map current step index to step ID\nconst currentStepId = computed(() => {\n const step = dynamicSteps.value[currentStep.value]\n return step?.id ?? 'input'\n})\n\n// Clamp step when dynamic steps change\nwatch(() => dynamicSteps.value.length, (newLen) => {\n if (currentStep.value >= newLen) {\n currentStep.value = newLen - 1\n }\n})\n\n// Step validity\nconst inputValid = computed(() => autoGroup.samples.value.length > 0)\nconst fieldsValid = computed(() => autoGroup.enabledFields.value.size > 0)\n\nwatch([inputValid, fieldsValid, dynamicSteps], () => {\n if (!wizardRef.value) return\n const steps = dynamicSteps.value\n for (let i = 0; i < steps.length; i++) {\n const id = steps[i].id\n if (id === 'input') wizardRef.value.setStepValid(i, inputValid.value)\n else if (id === 'outliers') wizardRef.value.setStepValid(i, true)\n else if (id === 'fields') wizardRef.value.setStepValid(i, fieldsValid.value)\n else if (id === 'preview') wizardRef.value.setStepValid(i, true)\n }\n}, { immediate: true })\n\n// Navigation\nfunction handleNext() {\n if (currentStepId.value === 'input') {\n autoGroup.parseInput()\n }\n // StepWizard handles the actual navigation via v-model\n}\n\nfunction handleApply() {\n emit('apply', autoGroup.result.value)\n emit('update:modelValue', false)\n}\n\nfunction handleCancel() {\n emit('update:modelValue', false)\n}\n\n// CSV file handling\nfunction handleFileDrop(event: DragEvent) {\n event.preventDefault()\n isDragOver.value = false\n const files = event.dataTransfer?.files\n if (files && files.length > 0) {\n processFile(files[0])\n }\n}\n\nfunction handleFileInput(event: Event) {\n const target = event.target as HTMLInputElement\n if (target.files && target.files.length > 0) {\n processFile(target.files[0])\n }\n}\n\nasync function processFile(file: File) {\n if (!file.name.endsWith('.csv') && !file.name.endsWith('.tsv')) return\n\n try {\n const text = await file.text()\n const parsed = parseCSV(text)\n autoGroup.inputMode.value = 'csv'\n autoGroup.csvData.value = parsed\n csvFileName.value = file.name\n } catch {\n // CSV parse error — stay in current state\n }\n}\n\nfunction clearCsvFile() {\n autoGroup.csvData.value = null\n autoGroup.inputMode.value = 'paste'\n csvFileName.value = ''\n}\n\n// Last step check\nconst isLastStep = computed(() => currentStep.value === dynamicSteps.value.length - 1)\nconst isFirstStep = computed(() => currentStep.value === 0)\n</script>\n\n<template>\n <BaseModal\n :model-value=\"modelValue\"\n title=\"Smart Group\"\n size=\"lg\"\n @update:model-value=\"emit('update:modelValue', $event)\"\n @close=\"handleCancel\"\n >\n <div class=\"mld-auto-group\">\n <StepWizard\n ref=\"wizardRef\"\n v-model=\"currentStep\"\n :steps=\"dynamicSteps\"\n :linear=\"true\"\n size=\"sm\"\n >\n <!-- Step: Input -->\n <template #step-input>\n <div class=\"mld-auto-group__input-step\">\n <!-- Mode toggle -->\n <div class=\"mld-auto-group__mode-toggle\">\n <BaseButton\n :variant=\"autoGroup.inputMode.value === 'paste' ? 'primary' : 'secondary'\"\n size=\"sm\"\n @click=\"autoGroup.inputMode.value = 'paste'\"\n >\n Paste\n </BaseButton>\n <BaseButton\n :variant=\"autoGroup.inputMode.value === 'csv' ? 'primary' : 'secondary'\"\n size=\"sm\"\n @click=\"autoGroup.inputMode.value = 'csv'\"\n >\n CSV\n </BaseButton>\n </div>\n\n <!-- Paste mode -->\n <div v-if=\"autoGroup.inputMode.value === 'paste'\" class=\"mld-auto-group__paste\">\n <textarea\n v-model=\"autoGroup.rawText.value\"\n class=\"mld-auto-group__textarea\"\n rows=\"12\"\n placeholder=\"Paste sample names, one per line...\"\n />\n <div v-if=\"autoGroup.samples.value.length > 0\" class=\"mld-auto-group__sample-count\">\n {{ autoGroup.samples.value.length }} samples\n </div>\n </div>\n\n <!-- CSV mode -->\n <div v-if=\"autoGroup.inputMode.value === 'csv'\" class=\"mld-auto-group__csv\">\n <div v-if=\"!autoGroup.csvData.value\"\n :class=\"[\n 'mld-auto-group__dropzone',\n isDragOver ? 'mld-auto-group__dropzone--dragover' : '',\n ]\"\n @drop=\"handleFileDrop\"\n @dragover.prevent=\"isDragOver = true\"\n @dragleave=\"isDragOver = false\"\n >\n <input\n type=\"file\"\n accept=\".csv,.tsv\"\n class=\"mld-auto-group__file-input\"\n @change=\"handleFileInput\"\n />\n <svg class=\"mld-auto-group__upload-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"1.5\" d=\"M9 17v-2m3 2v-4m3 4v-6m2 10H7a2 2 0 01-2-2V5a2 2 0 012-2h5.586a1 1 0 01.707.293l5.414 5.414a1 1 0 01.293.707V19a2 2 0 01-2 2z\" />\n </svg>\n <p class=\"mld-auto-group__upload-text\">\n <span class=\"mld-auto-group__upload-highlight\">Click to upload</span>\n or drag and drop a CSV file\n </p>\n </div>\n\n <div v-else class=\"mld-auto-group__file-info\">\n <svg class=\"mld-auto-group__file-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 12h6m-6 4h6m2 5H7a2 2 0 01-2-2V5a2 2 0 012-2h5.586a1 1 0 01.707.293l5.414 5.414a1 1 0 01.293.707V19a2 2 0 01-2 2z\" />\n </svg>\n <span class=\"mld-auto-group__file-name\">{{ csvFileName }}</span>\n <span class=\"mld-auto-group__file-rows\">{{ autoGroup.csvData.value.rows.length }} rows</span>\n <button type=\"button\" class=\"mld-auto-group__file-clear\" @click=\"clearCsvFile\">\n Change file\n </button>\n </div>\n </div>\n </div>\n </template>\n\n <!-- Step: Outliers -->\n <template #step-outliers>\n <div class=\"mld-auto-group__outlier-step\">\n <div class=\"mld-auto-group__outlier-banner\">\n {{ autoGroup.outliers.value.length }} of {{ autoGroup.samples.value.length }}\n samples have irregular structure\n (fewer than {{ autoGroup.dominantFieldCount.value }} fields, delimiter\n <code>{{ autoGroup.delimiter.value }}</code>)\n </div>\n\n <div class=\"mld-auto-group__outlier-batch\">\n <BaseButton size=\"sm\" variant=\"secondary\" @click=\"autoGroup.setAllOutlierActions('include')\">\n Include All\n </BaseButton>\n <BaseButton size=\"sm\" variant=\"secondary\" @click=\"autoGroup.setAllOutlierActions('exclude')\">\n Exclude All\n </BaseButton>\n </div>\n\n <div class=\"mld-auto-group__outlier-list\">\n <div\n v-for=\"outlier in autoGroup.outliers.value\"\n :key=\"outlier.index\"\n class=\"mld-auto-group__outlier-item\"\n >\n <div class=\"mld-auto-group__outlier-info\">\n <code class=\"mld-auto-group__outlier-name\">{{ outlier.sample }}</code>\n <span class=\"mld-auto-group__outlier-badge\">{{ outlier.fieldCount }} fields</span>\n </div>\n <div class=\"mld-auto-group__outlier-actions\">\n <button\n type=\"button\"\n :class=\"['mld-auto-group__action-btn', outlier.action === 'include' ? 'mld-auto-group__action-btn--active' : '']\"\n @click=\"autoGroup.setOutlierAction(outlier.index, 'include')\"\n >Include</button>\n <button\n type=\"button\"\n :class=\"['mld-auto-group__action-btn', outlier.action === 'exclude' ? 'mld-auto-group__action-btn--active mld-auto-group__action-btn--exclude' : '']\"\n @click=\"autoGroup.setOutlierAction(outlier.index, 'exclude')\"\n >Exclude</button>\n <button\n type=\"button\"\n :class=\"['mld-auto-group__action-btn', outlier.action === 'qc' ? 'mld-auto-group__action-btn--active mld-auto-group__action-btn--qc' : '']\"\n @click=\"autoGroup.setOutlierAction(outlier.index, 'qc')\"\n >QC</button>\n </div>\n </div>\n </div>\n </div>\n </template>\n\n <!-- Step: Fields -->\n <template #step-fields>\n <div class=\"mld-auto-group__field-step\">\n <div class=\"mld-auto-group__field-grid\">\n <div\n v-for=\"col in autoGroup.effectiveColumns.value\"\n :key=\"col.index\"\n :class=\"[\n 'mld-auto-group__field-card',\n autoGroup.enabledFields.value.has(col.index) ? 'mld-auto-group__field-card--enabled' : '',\n ]\"\n >\n <div class=\"mld-auto-group__field-header\">\n <label class=\"mld-auto-group__field-toggle\">\n <input\n type=\"checkbox\"\n :checked=\"autoGroup.enabledFields.value.has(col.index)\"\n @change=\"autoGroup.toggleField(col.index)\"\n />\n <span class=\"mld-auto-group__field-toggle-label\">Group by</span>\n </label>\n <span class=\"mld-auto-group__field-cardinality\">{{ col.cardinality }} unique</span>\n </div>\n\n <BaseInput\n :model-value=\"col.name\"\n placeholder=\"Field name...\"\n class=\"mld-auto-group__field-name-input\"\n @update:model-value=\"autoGroup.renameField(col.index, String($event ?? 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package/dist/components/NumberInput.vue.js CHANGED Viewed

@@ -1,7 +1,8 @@
 import { defineComponent, computed, openBlock, createElementBlock, normalizeClass, createElementVNode } from "vue";
-const _hoisted_1 = ["disabled"];
-const _hoisted_2 = ["value", "min", "max", "step", "disabled", "placeholder"];
+const _hoisted_1 = ["value", "min", "max", "step", "disabled", "placeholder"];
+const _hoisted_2 = { class: "mld-number-input__buttons" };
 const _hoisted_3 = ["disabled"];
+const _hoisted_4 = ["disabled"];
 const _sfc_main = /* @__PURE__ */ defineComponent({
   __name: "NumberInput",
   props: {
@@ -62,29 +63,6 @@ const _sfc_main = /* @__PURE__ */ defineComponent({
           __props.disabled ? "mld-number-input--disabled" : ""
         ])
       }, [
-        createElementVNode("button", {
-          type: "button",
-          "aria-label": "Decrease value",
-          disabled: __props.disabled || !canDecrement.value,
-          class: normalizeClass([
-            "mld-number-input__button",
-            "mld-number-input__button--decrement",
-            `mld-number-input__button--${__props.size}`
-          ]),
-          onClick: decrement
-        }, [..._cache[0] || (_cache[0] = [
-          createElementVNode("svg", {
-            class: "mld-number-input__button-icon",
-            fill: "none",
-            stroke: "currentColor",
-            "stroke-width": "2",
-            "stroke-linecap": "round",
-            "stroke-linejoin": "round",
-            viewBox: "0 0 24 24"
-          }, [
-            createElementVNode("path", { d: "M5 12h14" })
-          ], -1)
-        ])], 10, _hoisted_1),
         createElementVNode("input", {
           type: "number",
           value: __props.modelValue,
@@ -99,31 +77,56 @@ const _sfc_main = /* @__PURE__ */ defineComponent({
             __props.disabled ? "mld-number-input__input--disabled" : ""
           ]),
           onInput: handleInput
-        }, null, 42, _hoisted_2),
-        createElementVNode("button", {
-          type: "button",
-          "aria-label": "Increase value",
-          disabled: __props.disabled || !canIncrement.value,
-          class: normalizeClass([
-            "mld-number-input__button",
-            "mld-number-input__button--increment",
-            `mld-number-input__button--${__props.size}`
-          ]),
-          onClick: increment
-        }, [..._cache[1] || (_cache[1] = [
-          createElementVNode("svg", {
-            class: "mld-number-input__button-icon",
-            fill: "none",
-            stroke: "currentColor",
-            "stroke-width": "2",
-            "stroke-linecap": "round",
-            "stroke-linejoin": "round",
-            viewBox: "0 0 24 24"
-          }, [
-            createElementVNode("path", { d: "M5 12h14" }),
-            createElementVNode("path", { d: "M12 5v14" })
-          ], -1)
-        ])], 10, _hoisted_3)
+        }, null, 42, _hoisted_1),
+        createElementVNode("div", _hoisted_2, [
+          createElementVNode("button", {
+            type: "button",
+            "aria-label": "Decrease value",
+            disabled: __props.disabled || !canDecrement.value,
+            class: normalizeClass([
+              "mld-number-input__button",
+              "mld-number-input__button--decrement",
+              `mld-number-input__button--${__props.size}`
+            ]),
+            onClick: decrement
+          }, [..._cache[0] || (_cache[0] = [
+            createElementVNode("svg", {
+              class: "mld-number-input__button-icon",
+              fill: "none",
+              stroke: "currentColor",
+              "stroke-width": "2",
+              "stroke-linecap": "round",
+              "stroke-linejoin": "round",
+              viewBox: "0 0 24 24"
+            }, [
+              createElementVNode("path", { d: "M5 12h14" })
+            ], -1)
+          ])], 10, _hoisted_3),
+          createElementVNode("button", {
+            type: "button",
+            "aria-label": "Increase value",
+            disabled: __props.disabled || !canIncrement.value,
+            class: normalizeClass([
+              "mld-number-input__button",
+              "mld-number-input__button--increment",
+              `mld-number-input__button--${__props.size}`
+            ]),
+            onClick: increment
+          }, [..._cache[1] || (_cache[1] = [
+            createElementVNode("svg", {
+              class: "mld-number-input__button-icon",
+              fill: "none",
+              stroke: "currentColor",
+              "stroke-width": "2",
+              "stroke-linecap": "round",
+              "stroke-linejoin": "round",
+              viewBox: "0 0 24 24"
+            }, [
+              createElementVNode("path", { d: "M5 12h14" }),
+              createElementVNode("path", { d: "M12 5v14" })
+            ], -1)
+          ])], 10, _hoisted_4)
+        ])
       ], 2);
     };
   }

package/dist/components/NumberInput.vue.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"NumberInput.vue.js","sources":["../../src/components/NumberInput.vue"],"sourcesContent":["<script setup lang=\"ts\">\nimport { computed } from 'vue'\n\ninterface Props {\n modelValue?: number\n min?: number\n max?: number\n step?: number\n disabled?: boolean\n error?: boolean\n size?: 'sm' \| 'md' \| 'lg'\n placeholder?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n step: 1,\n disabled: false,\n error: false,\n size: 'md',\n})\n\nconst emit = defineEmits<{\n 'update:modelValue': [value: number \| undefined]\n}>()\n\nconst canDecrement = computed(() => {\n if (props.modelValue === undefined) return true\n if (props.min === undefined) return true\n return props.modelValue > props.min\n})\n\nconst canIncrement = computed(() => {\n if (props.modelValue === undefined) return true\n if (props.max === undefined) return true\n return props.modelValue < props.max\n})\n\nfunction clamp(value: number): number {\n let result = value\n if (props.min !== undefined && result < props.min) result = props.min\n if (props.max !== undefined && result > props.max) result = props.max\n return result\n}\n\nfunction handleInput(event: Event) {\n const target = event.target as HTMLInputElement\n const value = target.value === '' ? undefined : Number(target.value)\n if (value !== undefined && !isNaN(value)) {\n emit('update:modelValue', clamp(value))\n } else {\n emit('update:modelValue', undefined)\n }\n}\n\nfunction decrement() {\n if (props.disabled \|\| !canDecrement.value) return\n const current = props.modelValue ?? (props.max ?? 0)\n emit('update:modelValue', clamp(current - props.step))\n}\n\nfunction increment() {\n if (props.disabled \|\| !canIncrement.value) return\n const current = props.modelValue ?? (props.min ?? 0)\n emit('update:modelValue', clamp(current + props.step))\n}\n</script>\n\n<template>\n <div\n :class=\"[\n 'mld-number-input',\n `mld-number-input--${size}`,\n error ? 'mld-number-input--error' : '',\n disabled ? 'mld-number-input--disabled' : '',\n ]\"\n >\n <~~button~~\n type=\"button\"\n aria-label=\"Decrease value\"\n :disabled=\"disabled \|\| !canDecrement\"\n :class=\"[\n 'mld-number-input__button',\n 'mld-number-input__button--decrement',\n `mld-number-input__button--${size}`,\n ]\"\n @click=\"decrement\"\n >\n <svg class=\"mld-number-input__button-icon\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\" viewBox=\"0 0 24 24\">\n <path d=\"M5 12h14\" />\n </svg>\n </button>\n\n ~~<input\n~~ type=\"number\"\n :value=\"modelValue\"\n :min=\"min\"\n :max=\"max\"\n :step=\"step\"\n :disabled=\"disabled\"\n :placeholder=\"placeholder\"\n :class=\"[\n 'mld-number-input__input',\n `mld-number-input__input--${size}`,\n disabled ? 'mld-number-input__input--disabled' : '',\n ]\"\n @input=\"handleInput\"\n />\n\n <button\n type=\"button\"\n aria-label=\"Increase value\"\n :disabled=\"disabled \|\| !canIncrement\"\n :class=\"[\n 'mld-number-input__button',\n 'mld-number-input__button--increment',\n `mld-number-input__button--${size}`,\n ]\"\n @click=\"increment\"\n >\n <svg class=\"mld-number-input__button-icon\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\" viewBox=\"0 0 24 24\">\n <path d=\"M5 12h14\" /><path d=\"M12 5v14\" />\n </svg>\n </button>\n </div>\n</template>\n\n<style>\n@import '../styles/components/number-input.css';\n</style>\n"],"names":["_createElementBlock","_normalizeClass","_createElementVNode"],"mappings":"~~;;;;;;;;;;;;;;;;;;~~AAcA,UAAM,QAAQ;AAOd,UAAM,OAAO;AAIb,UAAM,eAAe,SAAS,MAAM;AAClC,UAAI,MAAM,eAAe,OAAW,QAAO;AAC3C,UAAI,MAAM,QAAQ,OAAW,QAAO;AACpC,aAAO,MAAM,aAAa,MAAM;AAAA,IAClC,CAAC;AAED,UAAM,eAAe,SAAS,MAAM;AAClC,UAAI,MAAM,eAAe,OAAW,QAAO;AAC3C,UAAI,MAAM,QAAQ,OAAW,QAAO;AACpC,aAAO,MAAM,aAAa,MAAM;AAAA,IAClC,CAAC;AAED,aAAS,MAAM,OAAuB;AACpC,UAAI,SAAS;AACb,UAAI,MAAM,QAAQ,UAAa,SAAS,MAAM,cAAc,MAAM;AAClE,UAAI,MAAM,QAAQ,UAAa,SAAS,MAAM,cAAc,MAAM;AAClE,aAAO;AAAA,IACT;AAEA,aAAS,YAAY,OAAc;AACjC,YAAM,SAAS,MAAM;AACrB,YAAM,QAAQ,OAAO,UAAU,KAAK,SAAY,OAAO,OAAO,KAAK;AACnE,UAAI,UAAU,UAAa,CAAC,MAAM,KAAK,GAAG;AACxC,aAAK,qBAAqB,MAAM,KAAK,CAAC;AAAA,MACxC,OAAO;AACL,aAAK,qBAAqB,MAAS;AAAA,MACrC;AAAA,IACF;AAEA,aAAS,YAAY;AACnB,UAAI,MAAM,YAAY,CAAC,aAAa,MAAO;AAC3C,YAAM,UAAU,MAAM,eAAe,MAAM,OAAO;AAClD,WAAK,qBAAqB,MAAM,UAAU,MAAM,IAAI,CAAC;AAAA,IACvD;AAEA,aAAS,YAAY;AACnB,UAAI,MAAM,YAAY,CAAC,aAAa,MAAO;AAC3C,YAAM,UAAU,MAAM,eAAe,MAAM,OAAO;AAClD,WAAK,qBAAqB,MAAM,UAAU,MAAM,IAAI,CAAC;AAAA,IACvD;;0BAIEA,~~mBAuDM~~,OAAA;AAAA,~~QAtDH~~,OAAKC,eAAA;AAAA;+BAAyD,QAAA,IAAI;AAAA,UAAU,QAAA,QAAK,4BAAA;AAAA,UAAyC,QAAA,WAAQ,+BAAA;AAAA,QAAA;;QAOnIC,~~mBAcS~~,~~UAAA~~;AAAA,~~UAbP~~,MAAK;AAAA,~~UACL~~,~~cAAW~~;AAAA,~~UACV~~,~~UAAU~~,QAAA,~~YAAQ~~,~~CAAK~~,~~aAAA~~;AAAA,~~UACvB~~,~~OAAKD~~,~~eAAA~~;AAAA~~;;yCAA4H~~,QAAA~~,IAAI~~;AAAA,~~UAAA;UAKrI~~,~~SAAO;AAAA~~,QAAA;~~UAERC~~,~~mBAEM~~,~~OAAA~~;AAAA,~~YAFD~~,~~OAAM~~;AAAA,~~YAAgC~~,~~MAAK~~;AAAA,~~YAAO~~,~~QAAO~~;AAAA,~~YAAe~~,~~gBAAa~~;AAAA,~~YAAI~~,~~kBAAe~~;AAAA,~~YAAQ~~,~~mBAAgB~~;AAAA,~~YAAQ~~,~~SAAQ~~;AAAA,~~UAAA;YACnJA~~,~~mBAAqB~~,QAAA,~~EAAf~~,~~GAAE~~,~~YAAU~~;AAAA,~~UAAA;;QAItBA~~,~~mBAcE~~,~~SAAA~~;AAAA,~~UAbA~~,~~MAAK~~;AAAA,~~UACJ~~,~~OAAO,QAAA~~;AAAA,~~UACP~~,~~KAAK~~,~~QAAA~~;AAAA,~~UACL~~,~~KAAK,QAAA~~;AAAA,~~UACL~~,~~MAAM,QAAA~~;AAAA,~~UACN~~,~~UAAU,QAAA~~;AAAA,~~UACV~~,~~aAAa,QAAA~~;AAAA,~~UACb~~,~~OAAKD,eAAA~~;AAAA~~;wCAA2E~~,~~QAAA~~,~~IAAI~~;AAAA,~~YAAY~~,~~QAAA,WAAQ,sCAAA~~;AAAA,~~UAAA~~;~~UAKxG~~,~~SAAO;AAAA~~,QAAA;~~QAGVC~~,mBAcS,UAAA;AAAA,~~UAbP~~,MAAK;AAAA,~~UACL~~,cAAW;AAAA,~~UACV~~,UAAU,QAAA,YAAQ,CAAK,aAAA;AAAA,~~UACvB~~,OAAKD,eAAA;AAAA;;~~yCAA4H~~,QAAA,IAAI;AAAA,~~UAAA~~;~~UAKrI~~,SAAO;AAAA,~~QAAA~~;~~UAERC~~,mBAEM,OAAA;AAAA,~~YAFD~~,OAAM;AAAA,~~YAAgC~~,MAAK;AAAA,~~YAAO~~,QAAO;AAAA,~~YAAe~~,gBAAa;AAAA,~~YAAI~~,kBAAe;AAAA,~~YAAQ~~,mBAAgB;AAAA,~~YAAQ~~,SAAQ;AAAA,~~UAAA~~;~~YACnJA~~,mBAAqB,QAAA,EAAf,GAAE,YAAU;AAAA,~~YAAGA~~,mBAAqB,QAAA,EAAf,GAAE,YAAU;AAAA,~~UAAA;;;;;;~~"}
1	+ {"version":3,"file":"NumberInput.vue.js","sources":["../../src/components/NumberInput.vue"],"sourcesContent":["<script setup lang=\"ts\">\nimport { computed } from 'vue'\n\ninterface Props {\n modelValue?: number\n min?: number\n max?: number\n step?: number\n disabled?: boolean\n error?: boolean\n size?: 'sm' \| 'md' \| 'lg'\n placeholder?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n step: 1,\n disabled: false,\n error: false,\n size: 'md',\n})\n\nconst emit = defineEmits<{\n 'update:modelValue': [value: number \| undefined]\n}>()\n\nconst canDecrement = computed(() => {\n if (props.modelValue === undefined) return true\n if (props.min === undefined) return true\n return props.modelValue > props.min\n})\n\nconst canIncrement = computed(() => {\n if (props.modelValue === undefined) return true\n if (props.max === undefined) return true\n return props.modelValue < props.max\n})\n\nfunction clamp(value: number): number {\n let result = value\n if (props.min !== undefined && result < props.min) result = props.min\n if (props.max !== undefined && result > props.max) result = props.max\n return result\n}\n\nfunction handleInput(event: Event) {\n const target = event.target as HTMLInputElement\n const value = target.value === '' ? undefined : Number(target.value)\n if (value !== undefined && !isNaN(value)) {\n emit('update:modelValue', clamp(value))\n } else {\n emit('update:modelValue', undefined)\n }\n}\n\nfunction decrement() {\n if (props.disabled \|\| !canDecrement.value) return\n const current = props.modelValue ?? 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package/dist/composables/useAutoGroup.d.ts CHANGED Viewed

@@ -8,6 +8,7 @@ export declare function analyzeDelimiter(lines: string[]): {
     consistency: number;
 };
 export declare function detectOutliers(lines: string[], delimiter: string, minFieldCount: number): OutlierInfo[];
+export declare function classifyOutlierAction(sample: string, delimiter: string): OutlierAction;
 export declare function extractColumns(samples: string[], delimiter: string, minFieldCount: number): ColumnInfo[];
 export declare function parseCSVLine(line: string): string[];
 export declare function parseCSV(text: string): ParsedCsvData;

package/dist/composables/useAutoGroup.js CHANGED Viewed

@@ -66,6 +66,19 @@ function detectOutliers(lines, delimiter, minFieldCount) {
   }
   return outliers;
 }
+const QC_KEYWORDS = /* @__PURE__ */ new Set([
+  "eqc",
+  "iqc",
+  "qc",
+  "blank",
+  "std",
+  "standard",
+  "test"
+]);
+function classifyOutlierAction(sample, delimiter) {
+  const segments = sample.split(delimiter);
+  return segments.some((seg) => QC_KEYWORDS.has(seg.toLowerCase())) ? "qc" : "include";
+}
 function extractColumns(samples, delimiter, minFieldCount) {
   if (samples.length === 0) return [];
   const suffixCount = minFieldCount - 1;
@@ -286,14 +299,20 @@ function useAutoGroup() {
     const analysis = analyzeDelimiter(lines);
     delimiter.value = analysis.delimiter;
     dominantFieldCount.value = analysis.dominantFieldCount;
-    minFieldCount.value = analysis.minFieldCount;
-    outliers.value = detectOutliers(lines, analysis.delimiter, analysis.minFieldCount);
+    outliers.value = detectOutliers(lines, analysis.delimiter, analysis.dominantFieldCount);
+    for (const outlier of outliers.value) {
+      outlier.action = classifyOutlierAction(outlier.sample, analysis.delimiter);
+    }
     const conforming = lines.filter(
       (_, i) => !outliers.value.some((o) => o.index === i)
     );
-    fields.value = extractColumns(conforming, analysis.delimiter, analysis.minFieldCount);
+    const conformingFieldCounts = conforming.map((s) => s.split(analysis.delimiter).length);
+    minFieldCount.value = conformingFieldCounts.length > 0 ? Math.min(...conformingFieldCounts) : analysis.dominantFieldCount;
+    fields.value = extractColumns(conforming, analysis.delimiter, minFieldCount.value);
     fieldNames.value = {};
-    enabledFields.value = new Set(fields.value.map((f) => f.index));
+    enabledFields.value = new Set(
+      fields.value.filter((f) => f.cardinality > 1).map((f) => f.index)
+    );
   }
   function parseCsvInput() {
     if (!csvData.value) return;
@@ -387,6 +406,7 @@ function useAutoGroup() {
 export {
   DEFAULT_COLORS,
   analyzeDelimiter,
+  classifyOutlierAction,
   computeGroups,
   detectOutliers,
   extractColumns,

package/dist/composables/useAutoGroup.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"useAutoGroup.js","sources":["../../src/composables/useAutoGroup.ts"],"sourcesContent":["import { ref, computed } from 'vue'\nimport type {\n InputMode,\n OutlierAction,\n OutlierInfo,\n ColumnInfo,\n MetadataRow,\n AutoGroupResult,\n ParsedCsvData,\n} from '../types/auto-group'\nimport type { SampleGroup } from '../types/components'\n\nexport const DEFAULT_COLORS = [\n '#3B82F6', '#10B981', '#F59E0B', '#EF4444', '#8B5CF6',\n '#EC4899', '#06B6D4', '#84CC16', '#F97316', '#6366F1',\n]\n\nconst DELIMITER_CANDIDATES = ['_', '-', '.'] as const\n\n// --- Pure functions (exported for testing) ---\n\nexport function analyzeDelimiter(lines: string[]): {\n delimiter: string\n dominantFieldCount: number\n minFieldCount: number\n consistency: number\n} {\n if (lines.length === 0) {\n return { delimiter: '_', dominantFieldCount: 1, minFieldCount: 1, consistency: 0 }\n }\n\n let bestDelimiter = '_'\n let bestConsistency = -1\n let bestFieldCount = 1\n\n for (const candidate of DELIMITER_CANDIDATES) {\n const fieldCounts = lines.map(line => line.split(candidate).length)\n const countFrequency = new Map<number, number>()\n\n for (const count of fieldCounts) {\n countFrequency.set(count, (countFrequency.get(count) ?? 0) + 1)\n }\n\n // Find mode (most frequent field count)\n let modeCount = 1\n let modeFrequency = 0\n for (const [count, freq] of countFrequency) {\n if (freq > modeFrequency \|\| (freq === modeFrequency && count > modeCount)) {\n modeCount = count\n modeFrequency = freq\n }\n }\n\n const rawConsistency = modeFrequency / lines.length\n // A delimiter that produces field count 1 didn't actually split anything\n const consistency = modeCount > 1 ? rawConsistency : 0\n\n if (\n consistency > bestConsistency \|\|\n (consistency === bestConsistency &&\n DELIMITER_CANDIDATES.indexOf(candidate) < DELIMITER_CANDIDATES.indexOf(bestDelimiter as typeof candidate))\n ) {\n bestDelimiter = candidate\n bestConsistency = consistency\n bestFieldCount = modeCount\n }\n }\n\n const bestFieldCounts = lines.map(line => line.split(bestDelimiter).length)\n const multiFieldCounts = bestFieldCounts.filter(c => c >= 2)\n const minFieldCount = multiFieldCounts.length > 0 ? Math.min(...multiFieldCounts) : 1\n\n return {\n delimiter: bestDelimiter,\n dominantFieldCount: bestFieldCount,\n minFieldCount,\n consistency: bestConsistency,\n }\n}\n\nexport function detectOutliers(\n lines: string[],\n delimiter: string,\n minFieldCount: number,\n): OutlierInfo[] {\n const outliers: OutlierInfo[] = []\n\n for (let i = 0; i < lines.length; i++) {\n const fieldCount = lines[i].split(delimiter).length\n if (fieldCount < minFieldCount) {\n outliers.push({\n sample: lines[i],\n index: i,\n fieldCount,\n action: 'include',\n })\n }\n }\n\n return outliers\n}\n\nexport function extractColumns(\n samples: string[],\n delimiter: string,\n minFieldCount: number,\n): ColumnInfo[] {\n if (samples.length === 0) return []\n\n const suffixCount = minFieldCount - 1\n const rows = samples.map(s => {\n const parts = s.split(delimiter)\n const splitAt = parts.length - suffixCount\n return [\n parts.slice(0, splitAt).join(delimiter),\n ...parts.slice(splitAt),\n ]\n })\n\n const columnCount = minFieldCount\n const columns: ColumnInfo[] = []\n for (let col = 0; col < columnCount; col++) {\n const values = rows.map(row => row[col])\n const unique = [...new Set(values)]\n columns.push({\n index: col,\n name: col === 0 ? 'Condition' : `Field ${col + 1}`,\n uniqueValues: unique,\n cardinality: unique.length,\n type: col === 0 ? 'prefix' : 'suffix',\n })\n }\n\n return columns\n}\n\nexport function parseCSVLine(line: string): string[] {\n const result: string[] = []\n let current = ''\n let inQuotes = false\n\n for (let i = 0; i < line.length; i++) {\n const char = line[i]\n if (char === '\"') {\n inQuotes = !inQuotes\n } else if (char === ',' && !inQuotes) {\n result.push(current.trim())\n current = ''\n } else {\n current += char\n }\n }\n result.push(current.trim())\n\n return result\n}\n\nexport function parseCSV(text: string): ParsedCsvData {\n const lines = text.trim().split('\\n')\n if (lines.length < 2) {\n throw new Error('CSV must have at least a header and one data row')\n }\n\n const headers = parseCSVLine(lines[0])\n const rows: Record<string, string>[] = []\n\n for (let i = 1; i < lines.length; i++) {\n const values = parseCSVLine(lines[i])\n if (values.length !== headers.length) continue\n const row: Record<string, string> = {}\n headers.forEach((header, idx) => {\n row[header] = values[idx]\n })\n rows.push(row)\n }\n\n // Auto-detect sample column\n const sampleKeywords = ['sample', 'name', 'id', 'sample_name', 'samplename']\n const sampleColumn =\n headers.find(h => sampleKeywords.includes(h.toLowerCase())) ?? headers[0]\n\n return { columns: headers, rows, sampleColumn }\n}\n\nexport function computeGroups(\n allSamples: string[],\n columns: ColumnInfo[],\n enabledFields: Set<number>,\n outlierActions: Map<number, OutlierAction>,\n delimiter: string,\n minFieldCount: number,\n): { groups: SampleGroup[]; metadata: MetadataRow[]; excludedSamples: string[] } {\n const excludedSamples: string[] = []\n const qcSamples: string[] = []\n const conformingSamples: string[] = []\n\n for (let i = 0; i < allSamples.length; i++) {\n const action = outlierActions.get(i)\n if (action === 'exclude') {\n excludedSamples.push(allSamples[i])\n } else if (action === 'qc') {\n qcSamples.push(allSamples[i])\n } else {\n conformingSamples.push(allSamples[i])\n }\n }\n\n // Build group map\n const groupMap = new Map<string, string[]>()\n const metadata: MetadataRow[] = []\n const enabledIndices = [...enabledFields].sort((a, b) => a - b)\n\n const suffixCount = minFieldCount - 1\n\n for (const sample of conformingSamples) {\n const parts = sample.split(delimiter)\n const splitAt = Math.max(1, parts.length - suffixCount)\n const row = [\n parts.slice(0, splitAt).join(delimiter),\n ...parts.slice(splitAt),\n ]\n\n // Build group key from enabled columns\n const keyParts: string[] = []\n for (const idx of enabledIndices) {\n if (idx < row.length && idx < columns.length) {\n keyParts.push(row[idx])\n }\n }\n const groupKey = keyParts.join(' / ')\n\n if (!groupMap.has(groupKey)) {\n groupMap.set(groupKey, [])\n }\n groupMap.get(groupKey)!.push(sample)\n\n // Build metadata row with ALL columns\n const fields: Record<string, string> = {}\n for (const col of columns) {\n if (col.index < row.length) {\n fields[col.name] = row[col.index]\n }\n }\n metadata.push({ sampleName: sample, fields, group: groupKey })\n }\n\n // Convert to SampleGroup[]\n const groups: SampleGroup[] = []\n let colorIdx = 0\n for (const [name, samples] of groupMap) {\n groups.push({\n name,\n color: DEFAULT_COLORS[colorIdx % DEFAULT_COLORS.length],\n samples,\n })\n colorIdx++\n }\n\n // QC group\n if (qcSamples.length > 0) {\n groups.push({\n name: 'QC',\n color: '#6B7280',\n samples: qcSamples,\n })\n for (const sample of qcSamples) {\n metadata.push({ sampleName: sample, fields: {}, group: 'QC' })\n }\n }\n\n return { groups, metadata, excludedSamples }\n}\n\n// --- Reactive composable ---\n\nexport function useAutoGroup() {\n const inputMode = ref<InputMode>('paste')\n const rawText = ref('')\n const csvData = ref<ParsedCsvData \| null>(null)\n const delimiter = ref('_')\n const dominantFieldCount = ref(1)\n const minFieldCount = ref(1)\n const outliers = ref<OutlierInfo[]>([])\n const fields = ref<ColumnInfo[]>([])\n const fieldNames = ref<Record<number, string>>({})\n const enabledFields = ref(new Set<number>())\n\n const samples = computed(() => {\n if (inputMode.value === 'csv' && csvData.value) {\n return csvData.value.rows.map(r => r[csvData.value!.sampleColumn])\n }\n return rawText.value\n .split('\\n')\n .map(l => l.trim())\n .filter(l => l.length > 0)\n })\n\n const hasOutliers = computed(() => outliers.value.length > 0)\n\n const conformingSamples = computed(() => {\n const outlierIndices = new Set(outliers.value.map(o => o.index))\n return samples.value.filter((_, i) => !outlierIndices.has(i))\n })\n\n const outlierActions = computed(() => {\n const map = new Map<number, OutlierAction>()\n for (const o of outliers.value) {\n map.set(o.index, o.action)\n }\n return map\n })\n\n const effectiveColumns = computed(() => {\n return fields.value.map(col => ({\n ...col,\n name: fieldNames.value[col.index] ?? col.name,\n }))\n })\n\n const groups = computed(() => {\n if (effectiveColumns.value.length === 0 \|\| enabledFields.value.size === 0) {\n return []\n }\n const result = computeGroups(\n samples.value,\n effectiveColumns.value,\n enabledFields.value,\n outlierActions.value,\n delimiter.value,\n minFieldCount.value,\n )\n return result.groups\n })\n\n const metadata = computed(() => {\n if (effectiveColumns.value.length === 0 \|\| enabledFields.value.size === 0) {\n return []\n }\n return computeGroups(\n samples.value,\n effectiveColumns.value,\n enabledFields.value,\n outlierActions.value,\n delimiter.value,\n minFieldCount.value,\n ).metadata\n })\n\n const excludedSamples = computed(() => {\n return computeGroups(\n samples.value,\n effectiveColumns.value,\n enabledFields.value,\n outlierActions.value,\n delimiter.value,\n minFieldCount.value,\n ).excludedSamples\n })\n\n const result = computed<AutoGroupResult>(() => ({\n groups: groups.value,\n metadata: metadata.value,\n excludedSamples: excludedSamples.value,\n }))\n\n function parseInput() {\n if (inputMode.value === 'csv' && csvData.value) {\n parseCsvInput()\n } else {\n parsePasteInput()\n }\n }\n\n function parsePasteInput() {\n const lines = samples.value\n if (lines.length === 0) return\n\n const analysis = analyzeDelimiter(lines)\n delimiter.value = analysis.delimiter\n dominantFieldCount.value = analysis.dominantFieldCount\n minFieldCount.value = analysis.minFieldCount\n\n outliers.value = detectOutliers(lines, analysis.delimiter, analysis.minFieldCount)\n\n const conforming = lines.filter(\n (_, i) => !outliers.value.some(o => o.index === i)\n )\n fields.value = extractColumns(conforming, analysis.delimiter, analysis.minFieldCount)\n\n // Reset field names and enable all by default\n fieldNames.value = {}\n enabledFields.value = new Set(fields.value.map(f => f.index))\n }\n\n function parseCsvInput() {\n if (!csvData.value) return\n\n const csv = csvData.value\n const nonSampleCols = csv.columns.filter(c => c !== csv.sampleColumn)\n\n fields.value = nonSampleCols.map((col, i) => {\n const values = csv.rows.map(r => r[col])\n const unique = [...new Set(values)]\n return {\n index: i,\n name: col,\n uniqueValues: unique,\n cardinality: unique.length,\n }\n })\n\n // For CSV, no outliers\n outliers.value = []\n delimiter.value = ','\n dominantFieldCount.value = csv.columns.length\n\n fieldNames.value = {}\n for (const f of fields.value) {\n fieldNames.value[f.index] = f.name\n }\n enabledFields.value = new Set(fields.value.map(f => f.index))\n }\n\n function setOutlierAction(index: number, action: OutlierAction) {\n const outlier = outliers.value.find(o => o.index === index)\n if (outlier) {\n outlier.action = action\n // Trigger reactivity\n outliers.value = [...outliers.value]\n }\n }\n\n function setAllOutlierActions(action: OutlierAction) {\n for (const outlier of outliers.value) {\n outlier.action = action\n }\n outliers.value = [...outliers.value]\n }\n\n function toggleField(index: number) {\n const newSet = new Set(enabledFields.value)\n if (newSet.has(index)) {\n newSet.delete(index)\n } else {\n 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1	+ {"version":3,"file":"useAutoGroup.js","sources":["../../src/composables/useAutoGroup.ts"],"sourcesContent":["import { ref, computed } from 'vue'\nimport type {\n InputMode,\n OutlierAction,\n OutlierInfo,\n ColumnInfo,\n MetadataRow,\n AutoGroupResult,\n ParsedCsvData,\n} from '../types/auto-group'\nimport type { SampleGroup } from '../types/components'\n\nexport const DEFAULT_COLORS = [\n '#3B82F6', '#10B981', '#F59E0B', '#EF4444', '#8B5CF6',\n '#EC4899', '#06B6D4', '#84CC16', '#F97316', '#6366F1',\n]\n\nconst DELIMITER_CANDIDATES = ['_', '-', '.'] as const\n\n// --- Pure functions (exported for testing) ---\n\nexport function analyzeDelimiter(lines: string[]): {\n delimiter: string\n dominantFieldCount: number\n minFieldCount: number\n consistency: number\n} {\n if (lines.length === 0) {\n return { delimiter: '_', dominantFieldCount: 1, minFieldCount: 1, consistency: 0 }\n }\n\n let bestDelimiter = '_'\n let bestConsistency = -1\n let bestFieldCount = 1\n\n for (const candidate of DELIMITER_CANDIDATES) {\n const fieldCounts = lines.map(line => line.split(candidate).length)\n const countFrequency = new Map<number, number>()\n\n for (const count of fieldCounts) {\n countFrequency.set(count, (countFrequency.get(count) ?? 0) + 1)\n }\n\n // Find mode (most frequent field count)\n let modeCount = 1\n let modeFrequency = 0\n for (const [count, freq] of countFrequency) {\n if (freq > modeFrequency \|\| (freq === modeFrequency && count > modeCount)) {\n modeCount = count\n modeFrequency = freq\n }\n }\n\n const rawConsistency = modeFrequency / lines.length\n // A delimiter that produces field count 1 didn't actually split anything\n const consistency = modeCount > 1 ? rawConsistency : 0\n\n if (\n consistency > bestConsistency \|\|\n (consistency === bestConsistency &&\n DELIMITER_CANDIDATES.indexOf(candidate) < DELIMITER_CANDIDATES.indexOf(bestDelimiter as typeof candidate))\n ) {\n bestDelimiter = candidate\n bestConsistency = consistency\n bestFieldCount = modeCount\n }\n }\n\n const bestFieldCounts = lines.map(line => line.split(bestDelimiter).length)\n const multiFieldCounts = bestFieldCounts.filter(c => c >= 2)\n const minFieldCount = multiFieldCounts.length > 0 ? 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headers[0]\n\n return { columns: headers, rows, sampleColumn }\n}\n\nexport function computeGroups(\n allSamples: string[],\n columns: ColumnInfo[],\n enabledFields: Set<number>,\n outlierActions: Map<number, OutlierAction>,\n delimiter: string,\n minFieldCount: number,\n): { groups: SampleGroup[]; metadata: MetadataRow[]; excludedSamples: string[] } {\n const excludedSamples: string[] = []\n const qcSamples: string[] = []\n const conformingSamples: string[] = []\n\n for (let i = 0; i < allSamples.length; i++) {\n const action = outlierActions.get(i)\n if (action === 'exclude') {\n excludedSamples.push(allSamples[i])\n } else if (action === 'qc') {\n qcSamples.push(allSamples[i])\n } else {\n conformingSamples.push(allSamples[i])\n }\n }\n\n // Build group map\n const groupMap = new Map<string, string[]>()\n const metadata: MetadataRow[] = []\n const enabledIndices = [...enabledFields].sort((a, b) => a - b)\n\n const suffixCount = minFieldCount - 1\n\n for (const sample of conformingSamples) {\n const parts = sample.split(delimiter)\n const splitAt = Math.max(1, parts.length - suffixCount)\n const row = [\n parts.slice(0, splitAt).join(delimiter),\n ...parts.slice(splitAt),\n ]\n\n // Build group key from enabled columns\n const keyParts: string[] = []\n for (const idx of enabledIndices) {\n if (idx < row.length && idx < columns.length) {\n keyParts.push(row[idx])\n }\n }\n const groupKey = keyParts.join(' / ')\n\n if (!groupMap.has(groupKey)) {\n groupMap.set(groupKey, [])\n }\n groupMap.get(groupKey)!.push(sample)\n\n // Build metadata row with ALL columns\n const fields: Record<string, string> = {}\n for (const col of columns) {\n if (col.index < row.length) {\n fields[col.name] = row[col.index]\n }\n }\n metadata.push({ sampleName: sample, fields, group: groupKey })\n }\n\n // Convert to SampleGroup[]\n const groups: SampleGroup[] = []\n let colorIdx = 0\n for (const [name, samples] of groupMap) {\n groups.push({\n name,\n color: DEFAULT_COLORS[colorIdx % DEFAULT_COLORS.length],\n samples,\n })\n colorIdx++\n }\n\n // QC group\n if (qcSamples.length > 0) {\n groups.push({\n name: 'QC',\n color: '#6B7280',\n samples: qcSamples,\n })\n for (const sample of qcSamples) {\n metadata.push({ sampleName: sample, fields: {}, group: 'QC' })\n }\n }\n\n return { groups, metadata, excludedSamples }\n}\n\n// --- Reactive composable ---\n\nexport function useAutoGroup() {\n const inputMode = ref<InputMode>('paste')\n const rawText = ref('')\n const csvData = ref<ParsedCsvData \| null>(null)\n const delimiter = ref('_')\n const dominantFieldCount = ref(1)\n const minFieldCount = ref(1)\n const outliers = ref<OutlierInfo[]>([])\n const fields = ref<ColumnInfo[]>([])\n const fieldNames = ref<Record<number, string>>({})\n const enabledFields = ref(new Set<number>())\n\n const samples = computed(() => {\n if (inputMode.value === 'csv' && csvData.value) {\n return csvData.value.rows.map(r => r[csvData.value!.sampleColumn])\n }\n return rawText.value\n .split('\\n')\n .map(l => l.trim())\n .filter(l => l.length > 0)\n })\n\n const hasOutliers = computed(() => outliers.value.length > 0)\n\n const conformingSamples = computed(() => {\n const outlierIndices = new Set(outliers.value.map(o => o.index))\n return samples.value.filter((_, i) => !outlierIndices.has(i))\n })\n\n const outlierActions = computed(() => {\n const map = new Map<number, OutlierAction>()\n for (const o of outliers.value) {\n map.set(o.index, o.action)\n }\n return map\n })\n\n const effectiveColumns = computed(() => {\n return fields.value.map(col => ({\n ...col,\n name: fieldNames.value[col.index] ?? col.name,\n }))\n })\n\n const groups = computed(() => {\n if (effectiveColumns.value.length === 0 \|\| enabledFields.value.size === 0) {\n return []\n }\n const result = computeGroups(\n samples.value,\n effectiveColumns.value,\n enabledFields.value,\n outlierActions.value,\n delimiter.value,\n minFieldCount.value,\n )\n return result.groups\n })\n\n const metadata = computed(() => {\n if (effectiveColumns.value.length === 0 \|\| enabledFields.value.size === 0) {\n return []\n }\n return computeGroups(\n samples.value,\n effectiveColumns.value,\n enabledFields.value,\n outlierActions.value,\n delimiter.value,\n minFieldCount.value,\n ).metadata\n })\n\n const excludedSamples = computed(() => {\n return computeGroups(\n samples.value,\n effectiveColumns.value,\n enabledFields.value,\n outlierActions.value,\n delimiter.value,\n minFieldCount.value,\n ).excludedSamples\n })\n\n const result = computed<AutoGroupResult>(() => ({\n groups: groups.value,\n metadata: metadata.value,\n excludedSamples: excludedSamples.value,\n }))\n\n function parseInput() {\n if (inputMode.value === 'csv' && csvData.value) {\n parseCsvInput()\n } else {\n parsePasteInput()\n }\n }\n\n function parsePasteInput() {\n const lines = samples.value\n if (lines.length === 0) return\n\n const analysis = analyzeDelimiter(lines)\n delimiter.value = analysis.delimiter\n dominantFieldCount.value = analysis.dominantFieldCount\n\n // Use dominantFieldCount as outlier threshold so QC/test samples with\n // fewer fields than the majority are correctly flagged\n outliers.value = detectOutliers(lines, analysis.delimiter, analysis.dominantFieldCount)\n\n // Apply smart default actions: auto-classify QC/test samples\n for (const outlier of outliers.value) {\n outlier.action = classifyOutlierAction(outlier.sample, analysis.delimiter)\n }\n\n const conforming = lines.filter(\n (_, i) => !outliers.value.some(o => o.index === i)\n )\n\n // Recompute minFieldCount from conforming samples only\n const conformingFieldCounts = conforming.map(s => s.split(analysis.delimiter).length)\n minFieldCount.value = conformingFieldCounts.length > 0\n ? Math.min(...conformingFieldCounts)\n : analysis.dominantFieldCount\n\n fields.value = extractColumns(conforming, analysis.delimiter, minFieldCount.value)\n\n // Reset field names; auto-disable constant columns (cardinality 1)\n fieldNames.value = {}\n enabledFields.value = new Set(\n fields.value.filter(f => f.cardinality > 1).map(f => f.index)\n )\n }\n\n function parseCsvInput() {\n if (!csvData.value) return\n\n const csv = csvData.value\n const nonSampleCols = csv.columns.filter(c => c !== csv.sampleColumn)\n\n fields.value = nonSampleCols.map((col, i) => {\n const values = csv.rows.map(r => r[col])\n const unique = [...new Set(values)]\n return {\n index: i,\n name: col,\n uniqueValues: unique,\n cardinality: unique.length,\n }\n })\n\n // For CSV, no outliers\n outliers.value = []\n delimiter.value = ','\n dominantFieldCount.value = csv.columns.length\n\n fieldNames.value = {}\n for (const f of fields.value) {\n fieldNames.value[f.index] = f.name\n }\n enabledFields.value = new Set(fields.value.map(f => f.index))\n }\n\n function setOutlierAction(index: number, action: OutlierAction) {\n const outlier = outliers.value.find(o => o.index === index)\n if (outlier) {\n outlier.action = action\n // Trigger reactivity\n outliers.value = [...outliers.value]\n }\n }\n\n function setAllOutlierActions(action: OutlierAction) {\n for (const outlier of outliers.value) {\n outlier.action = action\n }\n outliers.value = [...outliers.value]\n }\n\n function toggleField(index: number) {\n const newSet = new Set(enabledFields.value)\n if (newSet.has(index)) {\n newSet.delete(index)\n } else {\n newSet.add(index)\n }\n enabledFields.value = newSet\n }\n\n function renameField(index: number, name: string) {\n fieldNames.value = { ...fieldNames.value, [index]: name }\n }\n\n function reset() {\n rawText.value = ''\n csvData.value = null\n delimiter.value = '_'\n dominantFieldCount.value = 1\n minFieldCount.value = 1\n outliers.value = []\n fields.value = []\n fieldNames.value = 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