@morscherlab/mld-sdk 0.7.4 → 0.7.6

package/dist/components/SampleSelector.vue.js.map

@@ -1 +1 @@
-{"version":3,"file":"SampleSelector.vue.js","sources":["../../src/components/SampleSelector.vue"],"sourcesContent":["<script setup lang=\"ts\">\nimport { ref, computed, onMounted, onUnmounted } from 'vue'\nimport BaseButton from './BaseButton.vue'\nimport BaseInput from './BaseInput.vue'\nimport GroupingModal from './GroupingModal.vue'\nimport type { SampleGroup } from '../types'\n\ninterface Props {\n  samples: string[]\n  modelValue: string[]\n  groups?: SampleGroup[]\n  enableGrouping?: boolean\n  enableAutoGroup?: boolean\n  enableMetadataGroup?: boolean\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  groups: () => [],\n  enableGrouping: true,\n  enableAutoGroup: true,\n  enableMetadataGroup: true,\n})\n\nconst emit = defineEmits<{\n  'update:modelValue': [samples: string[]]\n  'update:groups': [groups: SampleGroup[]]\n  autoGroup: [level: number]\n  metadataGroup: [mapping: Record<string, string[]>]\n}>()\n\nconst DEFAULT_COLORS = [\n  '#3B82F6', '#10B981', '#F59E0B', '#EF4444', '#8B5CF6',\n  '#EC4899', '#06B6D4', '#84CC16', '#F97316', '#6366F1',\n]\n\n// UI State\nconst showLevelPopover = ref(false)\nconst popoverRef = ref<HTMLDivElement | null>(null)\nconst showMetadataModal = ref(false)\nconst newGroupName = ref('')\nconst editingGroupColor = ref<string | null>(null)\nconst colorPickerInput = ref<HTMLInputElement | null>(null)\nconst expandedGroups = ref<Record<string, boolean>>({})\nconst searchQuery = ref('')\n\n// Drag and Drop State\nconst draggingSample = ref<string | null>(null)\nconst dragSourceGroup = ref<string | null>(null)\nconst dragOverGroup = ref<string | null>(null)\n\n// Computed: groups from props\nconst internalGroups = computed({\n  get: () => props.groups,\n  set: (value) => emit('update:groups', value),\n})\n\n// Computed: hierarchical structure (Major Group > Sub Groups > Samples)\ninterface MajorGroup {\n  name: string\n  color: string\n  subGroups: SampleGroup[]\n  allSamples: string[]\n}\n\nconst hierarchicalGroups = computed<MajorGroup[]>(() => {\n  const groups = internalGroups.value\n  if (groups.length === 0) return []\n\n  // Detect separator: use '/' if any group name contains it, otherwise '_'\n  const separator = groups.some(g => g.name.includes('/')) ? '/' : '_'\n  const majorGroupMap: Record<string, SampleGroup[]> = {}\n\n  for (const group of groups) {\n    const parts = group.name.split(separator)\n    // Use first part as major group, or full name if no separator\n    const majorPrefix = parts.length > 1 ? parts[0] : group.name\n\n    if (!majorGroupMap[majorPrefix]) {\n      majorGroupMap[majorPrefix] = []\n    }\n    majorGroupMap[majorPrefix].push(group)\n  }\n\n  const result: MajorGroup[] = []\n\n  for (const [majorName, subGroups] of Object.entries(majorGroupMap).sort(([a], [b]) => a.localeCompare(b))) {\n    const allSamples = subGroups.flatMap(g => g.samples)\n    const color = subGroups[0]?.color || '#3B82F6'\n\n    result.push({\n      name: majorName,\n      color,\n      subGroups: subGroups.sort((a, b) => a.name.localeCompare(b.name)),\n      allSamples\n    })\n  }\n\n  return result\n})\n\n// Check if hierarchy is meaningful (major groups have multiple sub-groups)\n// If each major group only has 1 sub-group with same name, show flat view instead\nconst showHierarchy = computed(() => {\n  const groups = hierarchicalGroups.value\n  if (groups.length === 0) return false\n\n  // Show hierarchy if any major group has multiple sub-groups\n  // OR if major group name differs from its sub-group name\n  return groups.some(major =>\n    major.subGroups.length > 1 ||\n    (major.subGroups.length === 1 && major.name !== major.subGroups[0].name)\n  )\n})\n\nconst groupingEnabled = computed(() => internalGroups.value.length > 0)\n\nconst ungroupedSamples = computed(() => {\n  const groupedSamples = new Set(\n    internalGroups.value.flatMap(g => g.samples)\n  )\n  return props.samples.filter(s => !groupedSamples.has(s))\n})\n\nconst filteredSamples = computed(() => {\n  if (!searchQuery.value.trim()) return props.samples\n  const query = searchQuery.value.toLowerCase()\n  return props.samples.filter(s => s.toLowerCase().includes(query))\n})\n\n// Compute available grouping levels with preview\nconst groupingLevels = computed(() => {\n  if (props.samples.length === 0) return []\n\n  const maxLevel = detectGroupingLevels()\n  const levels: Array<{ level: number; groupCount: number; example: string; description: string }> = []\n\n  for (let level = 1; level <= maxLevel; level++) {\n    const prefixGroups: Record<string, string[]> = {}\n\n    for (const sample of props.samples) {\n      const parts = sample.split(/[_\\-.]/)\n      const prefix = parts.slice(0, level).join('_')\n      if (prefix) {\n        if (!prefixGroups[prefix]) {\n          prefixGroups[prefix] = []\n        }\n        prefixGroups[prefix].push(sample)\n      }\n    }\n\n    const groupNames = Object.keys(prefixGroups).sort()\n    const example = groupNames[0] || ''\n    const descriptions = ['main groups', 'sub-groups']\n    const description = descriptions[level - 1] || `level ${level} groups`\n\n    levels.push({\n      level,\n      groupCount: groupNames.length,\n      example,\n      description\n    })\n  }\n\n  return levels\n})\n\nfunction detectGroupingLevels(): number {\n  if (props.samples.length === 0) return 1\n  const maxParts = Math.max(...props.samples.map(s => s.split(/[_\\-.]/).length))\n  return Math.min(maxParts, 3)\n}\n\n// Selection state\nconst isAllSelected = computed(() =>\n  props.samples.length > 0 && props.modelValue.length === props.samples.length\n)\n\n// Toggle functions\nfunction toggleSelectAll() {\n  if (isAllSelected.value) {\n    emit('update:modelValue', [])\n  } else {\n    emit('update:modelValue', [...props.samples])\n  }\n}\n\nfunction toggleSample(sample: string) {\n  const newSelection = props.modelValue.includes(sample)\n    ? props.modelValue.filter(s => s !== sample)\n    : [...props.modelValue, sample]\n  emit('update:modelValue', newSelection)\n}\n\nfunction toggleSamplesSelection(samples: string[]) {\n  const allSelected = samples.every(s => props.modelValue.includes(s))\n  const newSelection = allSelected\n    ? props.modelValue.filter(s => !samples.includes(s))\n    : [...props.modelValue, ...samples.filter(s => !props.modelValue.includes(s))]\n\n  emit('update:modelValue', newSelection)\n}\n\nfunction toggleGroupSamples(groupName: string) {\n  const group = internalGroups.value.find(g => g.name === groupName)\n  if (!group) return\n  toggleSamplesSelection(group.samples)\n}\n\nfunction toggleMajorGroupSamples(majorGroup: MajorGroup) {\n  toggleSamplesSelection(majorGroup.allSamples)\n}\n\n// Selection state checks\nfunction isFullySelected(samples: string[]): boolean {\n  return samples.length > 0 && samples.every(s => props.modelValue.includes(s))\n}\n\nfunction isPartiallySelected(samples: string[]): boolean {\n  if (samples.length === 0) return false\n  const selectedCount = samples.filter(s => props.modelValue.includes(s)).length\n  return selectedCount > 0 && selectedCount < samples.length\n}\n\nfunction isGroupFullySelected(groupName: string): boolean {\n  const group = internalGroups.value.find(g => g.name === groupName)\n  return group ? isFullySelected(group.samples) : false\n}\n\nfunction isGroupPartiallySelected(groupName: string): boolean {\n  const group = internalGroups.value.find(g => g.name === groupName)\n  return group ? isPartiallySelected(group.samples) : false\n}\n\nfunction isMajorGroupFullySelected(majorGroup: MajorGroup): boolean {\n  return isFullySelected(majorGroup.allSamples)\n}\n\nfunction isMajorGroupPartiallySelected(majorGroup: MajorGroup): boolean {\n  return isPartiallySelected(majorGroup.allSamples)\n}\n\n// Expand/collapse\nfunction toggleGroupExpanded(groupName: string) {\n  expandedGroups.value[groupName] = !expandedGroups.value[groupName]\n}\n\nfunction isGroupExpanded(groupName: string): boolean {\n  return !!expandedGroups.value[groupName]\n}\n\nfunction expandAllGroups() {\n  const expanded: Record<string, boolean> = {}\n  for (const major of hierarchicalGroups.value) {\n    expanded[`major:${major.name}`] = true\n    for (const sub of major.subGroups) {\n      expanded[sub.name] = true\n    }\n  }\n  expanded['__ungrouped__'] = true\n  expandedGroups.value = expanded\n}\n\nfunction collapseAllGroups() {\n  expandedGroups.value = {}\n}\n\n// Auto-group\nfunction toggleLevelPopover() {\n  showLevelPopover.value = !showLevelPopover.value\n}\n\nfunction selectLevel(level: number) {\n  emit('autoGroup', level)\n  showLevelPopover.value = false\n}\n\n// Group management\nfunction clearGroups() {\n  internalGroups.value = []\n}\n\nfunction deleteMajorGroup(majorGroup: MajorGroup) {\n  internalGroups.value = internalGroups.value.filter(\n    g => !majorGroup.subGroups.some(sg => sg.name === g.name)\n  )\n}\n\nfunction deleteGroup(groupName: string) {\n  internalGroups.value = internalGroups.value.filter(g => g.name !== groupName)\n}\n\nfunction removeSampleFromGroup(sample: string, groupName: string) {\n  internalGroups.value = internalGroups.value.map(g =>\n    g.name === groupName\n      ? { ...g, samples: g.samples.filter((s: string) => s !== sample) }\n      : g\n  )\n}\n\n// Drag and Drop handlers\nfunction handleDragStart(sample: string, sourceGroup: string | null, event: DragEvent) {\n  draggingSample.value = sample\n  dragSourceGroup.value = sourceGroup\n  if (event.dataTransfer) {\n    event.dataTransfer.effectAllowed = 'move'\n    event.dataTransfer.setData('text/plain', sample)\n  }\n}\n\nfunction resetDragState() {\n  draggingSample.value = null\n  dragSourceGroup.value = null\n  dragOverGroup.value = null\n}\n\nfunction handleDragEnd() {\n  resetDragState()\n}\n\nfunction handleDragOver(groupName: string, event: DragEvent) {\n  event.preventDefault()\n  if (event.dataTransfer) {\n    event.dataTransfer.dropEffect = 'move'\n  }\n  dragOverGroup.value = groupName\n}\n\nfunction handleDragLeave() {\n  dragOverGroup.value = null\n}\n\nfunction handleDrop(targetGroupName: string, event: DragEvent) {\n  event.preventDefault()\n\n  const sample = draggingSample.value\n  const sourceGroup = dragSourceGroup.value\n  if (!sample) return\n\n  if (sourceGroup === targetGroupName) {\n    resetDragState()\n    return\n  }\n\n  internalGroups.value = internalGroups.value.map(g => {\n    if (sourceGroup && g.name === sourceGroup) {\n      return { ...g, samples: g.samples.filter((s: string) => s !== sample) }\n    }\n    if (g.name === targetGroupName && !g.samples.includes(sample)) {\n      return { ...g, samples: [...g.samples, sample] }\n    }\n    return g\n  })\n\n  resetDragState()\n}\n\n// Color picker\nfunction openColorPicker(groupName: string, event: Event) {\n  event.stopPropagation()\n  editingGroupColor.value = groupName\n  colorPickerInput.value?.click()\n}\n\nfunction handleColorChange(event: Event) {\n  const target = event.target as HTMLInputElement\n  if (editingGroupColor.value) {\n    internalGroups.value = internalGroups.value.map(g =>\n      g.name === editingGroupColor.value ? { ...g, color: target.value } : g\n    )\n  }\n  editingGroupColor.value = null\n}\n\nfunction getGroupColor(groupName: string): string {\n  const group = internalGroups.value.find(g => g.name === groupName)\n  return group?.color || '#3B82F6'\n}\n\n// New group\nfunction addNewGroup() {\n  if (!newGroupName.value.trim()) return\n\n  const usedColors = new Set(internalGroups.value.map(g => g.color))\n  const availableColor = DEFAULT_COLORS.find(c => !usedColors.has(c)) || DEFAULT_COLORS[0]\n\n  const newGroup: SampleGroup = {\n    name: newGroupName.value.trim(),\n    color: availableColor,\n    samples: [],\n  }\n\n  internalGroups.value = [...internalGroups.value, newGroup]\n  newGroupName.value = ''\n}\n\n// Metadata modal\nfunction handleMetadataApply(mapping: Record<string, string[]>) {\n  emit('metadataGroup', mapping)\n  showMetadataModal.value = false\n}\n\n// Click outside handler\nfunction handleClickOutside(event: MouseEvent) {\n  if (popoverRef.value && !popoverRef.value.contains(event.target as Node)) {\n    showLevelPopover.value = false\n  }\n}\n\nonMounted(() => {\n  document.addEventListener('click', handleClickOutside)\n})\n\nonUnmounted(() => {\n  document.removeEventListener('click', handleClickOutside)\n})\n</script>\n\n<template>\n  <div class=\"mld-sample-selector\">\n    <!-- Select All Row -->\n    <label class=\"mld-sample-selector__select-all\">\n      <input\n        type=\"checkbox\"\n        :checked=\"isAllSelected\"\n        @change=\"toggleSelectAll\"\n        class=\"mld-sample-selector__checkbox\"\n      />\n      <span class=\"mld-sample-selector__select-all-label\">Select All</span>\n      <span class=\"mld-sample-selector__select-all-count\">{{ samples.length }} samples</span>\n    </label>\n\n    <!-- Action Buttons Row -->\n    <div v-if=\"enableGrouping\" class=\"mld-sample-selector__actions\" ref=\"popoverRef\">\n      <div class=\"mld-sample-selector__actions-row\">\n        <!-- Auto Group Button -->\n        <BaseButton\n          v-if=\"enableAutoGroup\"\n          :variant=\"(showLevelPopover || groupingEnabled) ? 'primary' : 'secondary'\"\n          size=\"sm\"\n          :disabled=\"samples.length === 0\"\n          class=\"mld-sample-selector__action-btn\"\n          @click.stop=\"toggleLevelPopover\"\n        >\n          <svg class=\"mld-sample-selector__action-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M13 10V3L4 14h7v7l9-11h-7z\" />\n          </svg>\n          <span>Auto</span>\n        </BaseButton>\n\n        <!-- Metadata Button -->\n        <BaseButton\n          v-if=\"enableMetadataGroup\"\n          variant=\"secondary\"\n          size=\"sm\"\n          :disabled=\"samples.length === 0\"\n          class=\"mld-sample-selector__action-btn\"\n          @click=\"showMetadataModal = true\"\n        >\n          <svg class=\"mld-sample-selector__action-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 12h6m-6 4h6m2 5H7a2 2 0 01-2-2V5a2 2 0 012-2h5.586a1 1 0 01.707.293l5.414 5.414a1 1 0 01.293.707V19a2 2 0 01-2 2z\" />\n          </svg>\n          <span>Metadata</span>\n        </BaseButton>\n\n        <!-- Reset Button -->\n        <BaseButton\n          variant=\"ghost\"\n          size=\"sm\"\n          :disabled=\"internalGroups.length === 0\"\n          class=\"mld-sample-selector__action-btn mld-sample-selector__action-btn--reset\"\n          @click=\"clearGroups\"\n          title=\"Clear all groups\"\n        >\n          <svg class=\"mld-sample-selector__action-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 4v5h.582m15.356 2A8.001 8.001 0 004.582 9m0 0H9m11 11v-5h-.581m0 0a8.003 8.003 0 01-15.357-2m15.357 2H15\" />\n          </svg>\n        </BaseButton>\n      </div>\n\n      <!-- Level Selection Popover -->\n      <Transition name=\"mld-popover\">\n        <div v-if=\"showLevelPopover\" class=\"mld-sample-selector__popover\">\n          <div class=\"mld-sample-selector__popover-header\">Auto-Group by Level</div>\n          <div class=\"mld-sample-selector__popover-body\">\n            <button\n              v-for=\"levelInfo in groupingLevels\"\n              :key=\"levelInfo.level\"\n              type=\"button\"\n              class=\"mld-sample-selector__level-btn\"\n              @click=\"selectLevel(levelInfo.level)\"\n            >\n              <div class=\"mld-sample-selector__level-info\">\n                <div class=\"mld-sample-selector__level-title\">\n                  <span>Level {{ levelInfo.level }}</span>\n                  <span class=\"mld-sample-selector__level-badge\">{{ levelInfo.groupCount }} groups</span>\n                </div>\n                <div class=\"mld-sample-selector__level-desc\">\n                  {{ levelInfo.description }}\n                  <span v-if=\"levelInfo.example\" class=\"mld-sample-selector__level-example\">\n                    e.g. <code>{{ levelInfo.example }}</code>\n                  </span>\n                </div>\n              </div>\n            </button>\n          </div>\n        </div>\n      </Transition>\n    </div>\n\n    <!-- Grouped View -->\n    <div v-if=\"groupingEnabled\" class=\"mld-sample-selector__grouped\">\n      <!-- Groups Header -->\n      <div class=\"mld-sample-selector__groups-header\">\n        <span class=\"mld-sample-selector__groups-title\">Groups ({{ internalGroups.length }})</span>\n        <div class=\"mld-sample-selector__groups-controls\">\n          <button type=\"button\" class=\"mld-sample-selector__expand-btn\" @click=\"expandAllGroups\" title=\"Expand all\">\n            <svg class=\"mld-sample-selector__expand-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n              <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M19 9l-7 7-7-7\" />\n            </svg>\n          </button>\n          <button type=\"button\" class=\"mld-sample-selector__expand-btn\" @click=\"collapseAllGroups\" title=\"Collapse all\">\n            <svg class=\"mld-sample-selector__expand-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n              <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n            </svg>\n          </button>\n        </div>\n      </div>\n\n      <!-- Hierarchical Tree -->\n      <div class=\"mld-sample-selector__tree\">\n        <!-- Major Groups (when hierarchy is meaningful) -->\n        <template v-if=\"showHierarchy\">\n          <div\n            v-for=\"majorGroup in hierarchicalGroups\"\n            :key=\"majorGroup.name\"\n            class=\"mld-sample-selector__major-group\"\n          >\n            <!-- Major Group Header -->\n            <div\n              class=\"mld-sample-selector__major-header\"\n              @click=\"toggleGroupExpanded(`major:${majorGroup.name}`)\"\n            >\n              <svg\n                :class=\"[\n                  'mld-sample-selector__chevron',\n                  isGroupExpanded(`major:${majorGroup.name}`) ? 'mld-sample-selector__chevron--open' : '',\n                ]\"\n                fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n              >\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n              </svg>\n\n              <input\n                type=\"checkbox\"\n                :checked=\"isMajorGroupFullySelected(majorGroup)\"\n                :indeterminate=\"isMajorGroupPartiallySelected(majorGroup)\"\n                class=\"mld-sample-selector__checkbox\"\n                :style=\"{ accentColor: majorGroup.color }\"\n                @click.stop\n                @change=\"toggleMajorGroupSamples(majorGroup)\"\n              />\n\n              <div\n                class=\"mld-sample-selector__color-dot mld-sample-selector__color-dot--large\"\n                :style=\"{ backgroundColor: majorGroup.color }\"\n              />\n\n              <span class=\"mld-sample-selector__major-name\">{{ majorGroup.name }}</span>\n\n              <span\n                class=\"mld-sample-selector__count-badge\"\n                :style=\"{ backgroundColor: majorGroup.color + '20', color: majorGroup.color }\"\n              >\n                {{ majorGroup.allSamples.length }}\n              </span>\n\n              <button\n                type=\"button\"\n                class=\"mld-sample-selector__delete-btn mld-sample-selector__delete-btn--hidden\"\n                @click.stop=\"deleteMajorGroup(majorGroup)\"\n                title=\"Remove major group\"\n              >\n                <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                  <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M6 18L18 6M6 6l12 12\" />\n                </svg>\n              </button>\n            </div>\n\n            <!-- Sub Groups (collapsible) -->\n            <Transition name=\"mld-collapse\">\n              <div\n                v-if=\"isGroupExpanded(`major:${majorGroup.name}`)\"\n                class=\"mld-sample-selector__sub-groups\"\n                :style=\"{ borderColor: majorGroup.color + '30' }\"\n              >\n              <div\n                v-for=\"subGroup in majorGroup.subGroups\"\n                :key=\"subGroup.name\"\n                :class=\"[\n                  'mld-sample-selector__sub-group',\n                  dragOverGroup === subGroup.name ? 'mld-sample-selector__sub-group--drag-over' : '',\n                ]\"\n                @dragover=\"handleDragOver(subGroup.name, $event)\"\n                @dragleave=\"handleDragLeave\"\n                @drop=\"handleDrop(subGroup.name, $event)\"\n              >\n                <!-- Sub Group Header -->\n                <div\n                  class=\"mld-sample-selector__sub-header\"\n                  @click=\"toggleGroupExpanded(subGroup.name)\"\n                >\n                  <svg\n                    :class=\"[\n                      'mld-sample-selector__chevron mld-sample-selector__chevron--small',\n                      isGroupExpanded(subGroup.name) ? 'mld-sample-selector__chevron--open' : '',\n                    ]\"\n                    fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n                  >\n                    <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n                  </svg>\n\n                  <input\n                    type=\"checkbox\"\n                    :checked=\"isGroupFullySelected(subGroup.name)\"\n                    :indeterminate=\"isGroupPartiallySelected(subGroup.name)\"\n                    class=\"mld-sample-selector__checkbox mld-sample-selector__checkbox--small\"\n                    :style=\"{ accentColor: subGroup.color }\"\n                    @click.stop\n                    @change=\"toggleGroupSamples(subGroup.name)\"\n                  />\n\n                  <button\n                    type=\"button\"\n                    class=\"mld-sample-selector__color-dot mld-sample-selector__color-dot--clickable\"\n                    :style=\"{ backgroundColor: subGroup.color }\"\n                    @click.stop=\"openColorPicker(subGroup.name, $event)\"\n                    title=\"Click to change color\"\n                  />\n\n                  <span class=\"mld-sample-selector__sub-name\">{{ subGroup.name }}</span>\n\n                  <span\n                    class=\"mld-sample-selector__count-badge mld-sample-selector__count-badge--small\"\n                    :style=\"{ backgroundColor: subGroup.color + '20', color: subGroup.color }\"\n                  >\n                    {{ subGroup.samples.length }}\n                  </span>\n\n                  <button\n                    type=\"button\"\n                    class=\"mld-sample-selector__delete-btn mld-sample-selector__delete-btn--hidden\"\n                    @click.stop=\"deleteGroup(subGroup.name)\"\n                    title=\"Remove sub group\"\n                  >\n                    <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                      <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M6 18L18 6M6 6l12 12\" />\n                    </svg>\n                  </button>\n                </div>\n\n                <!-- Samples (collapsible) -->\n                <Transition name=\"mld-collapse\">\n                  <div\n                    v-if=\"isGroupExpanded(subGroup.name)\"\n                    class=\"mld-sample-selector__samples\"\n                    :style=\"{ borderColor: subGroup.color + '40' }\"\n                  >\n                    <div\n                      v-for=\"sample in subGroup.samples\"\n                      :key=\"sample\"\n                      :class=\"[\n                        'mld-sample-selector__sample',\n                        draggingSample === sample ? 'mld-sample-selector__sample--dragging' : '',\n                      ]\"\n                      draggable=\"true\"\n                      @dragstart=\"handleDragStart(sample, subGroup.name, $event)\"\n                      @dragend=\"handleDragEnd\"\n                    >\n                      <svg class=\"mld-sample-selector__drag-handle\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                        <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 8h16M4 16h16\" />\n                      </svg>\n                      <input\n                        type=\"checkbox\"\n                        :checked=\"modelValue.includes(sample)\"\n                        class=\"mld-sample-selector__checkbox mld-sample-selector__checkbox--tiny\"\n                        :style=\"{ accentColor: subGroup.color }\"\n                        @change=\"toggleSample(sample)\"\n                      />\n                      <span class=\"mld-sample-selector__sample-name\">{{ sample }}</span>\n                      <button\n                        type=\"button\"\n                        class=\"mld-sample-selector__remove-btn\"\n                        @click=\"removeSampleFromGroup(sample, subGroup.name)\"\n                        title=\"Remove from group\"\n                      >\n                        <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                          <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M20 12H4\" />\n                        </svg>\n                      </button>\n                    </div>\n                  </div>\n                </Transition>\n              </div>\n            </div>\n          </Transition>\n        </div>\n        </template>\n\n        <!-- Flat Groups (when no meaningful hierarchy - e.g., level 1) -->\n        <template v-else>\n          <div\n            v-for=\"group in internalGroups\"\n            :key=\"group.name\"\n            :class=\"[\n              'mld-sample-selector__sub-group',\n              dragOverGroup === group.name ? 'mld-sample-selector__sub-group--drag-over' : '',\n            ]\"\n            @dragover=\"handleDragOver(group.name, $event)\"\n            @dragleave=\"handleDragLeave\"\n            @drop=\"handleDrop(group.name, $event)\"\n          >\n            <!-- Group Header -->\n            <div\n              class=\"mld-sample-selector__major-header\"\n              @click=\"toggleGroupExpanded(group.name)\"\n            >\n              <svg\n                :class=\"[\n                  'mld-sample-selector__chevron',\n                  isGroupExpanded(group.name) ? 'mld-sample-selector__chevron--open' : '',\n                ]\"\n                fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n              >\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n              </svg>\n\n              <input\n                type=\"checkbox\"\n                :checked=\"isGroupFullySelected(group.name)\"\n                :indeterminate=\"isGroupPartiallySelected(group.name)\"\n                class=\"mld-sample-selector__checkbox\"\n                :style=\"{ accentColor: group.color }\"\n                @click.stop\n                @change=\"toggleGroupSamples(group.name)\"\n              />\n\n              <button\n                type=\"button\"\n                class=\"mld-sample-selector__color-dot mld-sample-selector__color-dot--large mld-sample-selector__color-dot--clickable\"\n                :style=\"{ backgroundColor: group.color }\"\n                @click.stop=\"openColorPicker(group.name, $event)\"\n                title=\"Click to change color\"\n              />\n\n              <span class=\"mld-sample-selector__major-name\">{{ group.name }}</span>\n\n              <span\n                class=\"mld-sample-selector__count-badge\"\n                :style=\"{ backgroundColor: group.color + '20', color: group.color }\"\n              >\n                {{ group.samples.length }}\n              </span>\n\n              <button\n                type=\"button\"\n                class=\"mld-sample-selector__delete-btn mld-sample-selector__delete-btn--hidden\"\n                @click.stop=\"deleteGroup(group.name)\"\n                title=\"Remove group\"\n              >\n                <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                  <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M6 18L18 6M6 6l12 12\" />\n                </svg>\n              </button>\n            </div>\n\n            <!-- Samples (collapsible) -->\n            <Transition name=\"mld-collapse\">\n              <div\n                v-if=\"isGroupExpanded(group.name)\"\n                class=\"mld-sample-selector__samples\"\n                :style=\"{ borderColor: group.color + '40' }\"\n              >\n                <div\n                  v-for=\"sample in group.samples\"\n                  :key=\"sample\"\n                  :class=\"[\n                    'mld-sample-selector__sample',\n                    draggingSample === sample ? 'mld-sample-selector__sample--dragging' : '',\n                  ]\"\n                  draggable=\"true\"\n                  @dragstart=\"handleDragStart(sample, group.name, $event)\"\n                  @dragend=\"handleDragEnd\"\n                >\n                  <svg class=\"mld-sample-selector__drag-handle\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                    <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 8h16M4 16h16\" />\n                  </svg>\n                  <input\n                    type=\"checkbox\"\n                    :checked=\"modelValue.includes(sample)\"\n                    class=\"mld-sample-selector__checkbox mld-sample-selector__checkbox--tiny\"\n                    :style=\"{ accentColor: group.color }\"\n                    @change=\"toggleSample(sample)\"\n                  />\n                  <span class=\"mld-sample-selector__sample-name\">{{ sample }}</span>\n                  <button\n                    type=\"button\"\n                    class=\"mld-sample-selector__remove-btn\"\n                    @click=\"removeSampleFromGroup(sample, group.name)\"\n                    title=\"Remove from group\"\n                  >\n                    <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                      <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M20 12H4\" />\n                    </svg>\n                  </button>\n                </div>\n              </div>\n            </Transition>\n          </div>\n        </template>\n\n        <!-- Empty state -->\n        <div v-if=\"internalGroups.length === 0\" class=\"mld-sample-selector__empty\">\n          Click the lightning bolt to auto-group samples\n        </div>\n      </div>\n\n      <!-- Ungrouped Samples Section -->\n      <div v-if=\"ungroupedSamples.length > 0\" class=\"mld-sample-selector__ungrouped\">\n        <div\n          class=\"mld-sample-selector__ungrouped-header\"\n          @click=\"toggleGroupExpanded('__ungrouped__')\"\n        >\n          <svg\n            :class=\"[\n              'mld-sample-selector__chevron',\n              isGroupExpanded('__ungrouped__') ? 'mld-sample-selector__chevron--open' : '',\n            ]\"\n            fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n          >\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n          </svg>\n          <span class=\"mld-sample-selector__ungrouped-label\">Ungrouped</span>\n          <span class=\"mld-sample-selector__ungrouped-count\">{{ ungroupedSamples.length }}</span>\n        </div>\n\n        <Transition name=\"mld-collapse\">\n          <div\n            v-if=\"isGroupExpanded('__ungrouped__')\"\n            class=\"mld-sample-selector__ungrouped-list\"\n          >\n            <div\n              v-for=\"sample in ungroupedSamples\"\n              :key=\"sample\"\n              :class=\"[\n                'mld-sample-selector__sample',\n                draggingSample === sample ? 'mld-sample-selector__sample--dragging' : '',\n              ]\"\n              draggable=\"true\"\n              @dragstart=\"handleDragStart(sample, null, $event)\"\n              @dragend=\"handleDragEnd\"\n            >\n              <svg class=\"mld-sample-selector__drag-handle\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 8h16M4 16h16\" />\n              </svg>\n              <input\n                type=\"checkbox\"\n                :checked=\"modelValue.includes(sample)\"\n                class=\"mld-sample-selector__checkbox mld-sample-selector__checkbox--small\"\n                @change=\"toggleSample(sample)\"\n              />\n              <span class=\"mld-sample-selector__sample-name\">{{ sample }}</span>\n            </div>\n          </div>\n        </Transition>\n      </div>\n\n      <!-- New Group Input -->\n      <div class=\"mld-sample-selector__new-group\">\n        <BaseInput\n          v-model=\"newGroupName\"\n          placeholder=\"New group name...\"\n          class=\"mld-sample-selector__new-group-input\"\n          @keyup.enter=\"addNewGroup\"\n        />\n        <BaseButton\n          variant=\"ghost\"\n          size=\"sm\"\n          :disabled=\"!newGroupName.trim()\"\n          class=\"mld-sample-selector__new-group-btn\"\n          @click=\"addNewGroup\"\n        >\n          Add\n        </BaseButton>\n      </div>\n\n      <!-- Hidden color picker input -->\n      <input\n        ref=\"colorPickerInput\"\n        type=\"color\"\n        class=\"mld-sample-selector__color-input\"\n        :value=\"editingGroupColor ? getGroupColor(editingGroupColor) : '#3B82F6'\"\n        @change=\"handleColorChange\"\n      />\n    </div>\n\n    <!-- Flat View (when no groups) -->\n    <div v-if=\"!groupingEnabled\" class=\"mld-sample-selector__flat\">\n      <!-- Search -->\n      <div class=\"mld-sample-selector__search\">\n        <svg class=\"mld-sample-selector__search-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n          <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M21 21l-6-6m2-5a7 7 0 11-14 0 7 7 0 0114 0z\" />\n        </svg>\n        <input\n          v-model=\"searchQuery\"\n          type=\"text\"\n          placeholder=\"Search samples...\"\n          class=\"mld-sample-selector__search-input\"\n        />\n      </div>\n\n      <!-- Flat samples list -->\n      <div class=\"mld-sample-selector__flat-list\">\n        <div\n          v-for=\"sample in filteredSamples\"\n          :key=\"sample\"\n          class=\"mld-sample-selector__flat-item\"\n        >\n          <input\n            type=\"checkbox\"\n            :checked=\"modelValue.includes(sample)\"\n            class=\"mld-sample-selector__checkbox\"\n            @change=\"toggleSample(sample)\"\n          />\n          <span class=\"mld-sample-selector__flat-name\">{{ sample }}</span>\n        </div>\n\n        <div v-if=\"filteredSamples.length === 0 && searchQuery.trim()\" class=\"mld-sample-selector__empty\">\n          No samples match \"{{ searchQuery }}\"\n        </div>\n      </div>\n    </div>\n\n    <!-- Metadata Grouping Modal -->\n    <GroupingModal\n      :open=\"showMetadataModal\"\n      :samples=\"samples\"\n      @close=\"showMetadataModal = false\"\n      @apply=\"handleMetadataApply\"\n    />\n  </div>\n</template>\n\n<style>\n@import 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+{"version":3,"file":"SampleSelector.vue.js","sources":["../../src/components/SampleSelector.vue"],"sourcesContent":["<script setup lang=\"ts\">\nimport { ref, computed } from 'vue'\nimport BaseButton from './BaseButton.vue'\nimport BaseInput from './BaseInput.vue'\nimport AutoGroupModal from './AutoGroupModal.vue'\nimport type { SampleGroup } from '../types'\nimport type { AutoGroupResult } from '../types/auto-group'\n\ninterface Props {\n  samples: string[]\n  modelValue: string[]\n  groups?: SampleGroup[]\n  enableGrouping?: boolean\n  enableSmartGroup?: boolean\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  groups: () => [],\n  enableGrouping: true,\n  enableSmartGroup: true,\n})\n\nconst emit = defineEmits<{\n  'update:modelValue': [samples: string[]]\n  'update:groups': [groups: SampleGroup[]]\n  smartGroup: [result: AutoGroupResult]\n}>()\n\nconst DEFAULT_COLORS = [\n  '#3B82F6', '#10B981', '#F59E0B', '#EF4444', '#8B5CF6',\n  '#EC4899', '#06B6D4', '#84CC16', '#F97316', '#6366F1',\n]\n\n// UI State\nconst showSmartGroupModal = ref(false)\nconst newGroupName = ref('')\nconst editingGroupColor = ref<string | null>(null)\nconst colorPickerInput = ref<HTMLInputElement | null>(null)\nconst expandedGroups = ref<Record<string, boolean>>({})\nconst searchQuery = ref('')\n\n// Drag and Drop State\nconst draggingSample = ref<string | null>(null)\nconst dragSourceGroup = ref<string | null>(null)\nconst dragOverGroup = ref<string | null>(null)\n\n// Computed: groups from props\nconst internalGroups = computed({\n  get: () => props.groups,\n  set: (value) => emit('update:groups', value),\n})\n\n// Computed: hierarchical structure (Major Group > Sub Groups > Samples)\ninterface MajorGroup {\n  name: string\n  color: string\n  subGroups: SampleGroup[]\n  allSamples: string[]\n}\n\nconst hierarchicalGroups = computed<MajorGroup[]>(() => {\n  const groups = internalGroups.value\n  if (groups.length === 0) return []\n\n  // Detect separator: use '/' if any group name contains it, otherwise '_'\n  const separator = groups.some(g => g.name.includes('/')) ? '/' : '_'\n  const majorGroupMap: Record<string, SampleGroup[]> = {}\n\n  for (const group of groups) {\n    const parts = group.name.split(separator)\n    // Use first part as major group, or full name if no separator\n    const majorPrefix = parts.length > 1 ? parts[0] : group.name\n\n    if (!majorGroupMap[majorPrefix]) {\n      majorGroupMap[majorPrefix] = []\n    }\n    majorGroupMap[majorPrefix].push(group)\n  }\n\n  const result: MajorGroup[] = []\n\n  for (const [majorName, subGroups] of Object.entries(majorGroupMap).sort(([a], [b]) => a.localeCompare(b))) {\n    const allSamples = subGroups.flatMap(g => g.samples)\n    const color = subGroups[0]?.color || '#3B82F6'\n\n    result.push({\n      name: majorName,\n      color,\n      subGroups: subGroups.sort((a, b) => a.name.localeCompare(b.name)),\n      allSamples\n    })\n  }\n\n  return result\n})\n\n// Check if hierarchy is meaningful (major groups have multiple sub-groups)\n// If each major group only has 1 sub-group with same name, show flat view instead\nconst showHierarchy = computed(() => {\n  const groups = hierarchicalGroups.value\n  if (groups.length === 0) return false\n\n  // Show hierarchy if any major group has multiple sub-groups\n  // OR if major group name differs from its sub-group name\n  return groups.some(major =>\n    major.subGroups.length > 1 ||\n    (major.subGroups.length === 1 && major.name !== major.subGroups[0].name)\n  )\n})\n\nconst groupingEnabled = computed(() => internalGroups.value.length > 0)\n\nconst ungroupedSamples = computed(() => {\n  const groupedSamples = new Set(\n    internalGroups.value.flatMap(g => g.samples)\n  )\n  return props.samples.filter(s => !groupedSamples.has(s))\n})\n\nconst filteredSamples = computed(() => {\n  if (!searchQuery.value.trim()) return props.samples\n  const query = searchQuery.value.toLowerCase()\n  return props.samples.filter(s => s.toLowerCase().includes(query))\n})\n\n\n// Selection state\nconst isAllSelected = computed(() =>\n  props.samples.length > 0 && props.modelValue.length === props.samples.length\n)\n\n// Toggle functions\nfunction toggleSelectAll() {\n  if (isAllSelected.value) {\n    emit('update:modelValue', [])\n  } else {\n    emit('update:modelValue', [...props.samples])\n  }\n}\n\nfunction toggleSample(sample: string) {\n  const newSelection = props.modelValue.includes(sample)\n    ? props.modelValue.filter(s => s !== sample)\n    : [...props.modelValue, sample]\n  emit('update:modelValue', newSelection)\n}\n\nfunction toggleSamplesSelection(samples: string[]) {\n  const allSelected = samples.every(s => props.modelValue.includes(s))\n  const newSelection = allSelected\n    ? props.modelValue.filter(s => !samples.includes(s))\n    : [...props.modelValue, ...samples.filter(s => !props.modelValue.includes(s))]\n\n  emit('update:modelValue', newSelection)\n}\n\nfunction toggleGroupSamples(groupName: string) {\n  const group = internalGroups.value.find(g => g.name === groupName)\n  if (!group) return\n  toggleSamplesSelection(group.samples)\n}\n\nfunction toggleMajorGroupSamples(majorGroup: MajorGroup) {\n  toggleSamplesSelection(majorGroup.allSamples)\n}\n\n// Selection state checks\nfunction isFullySelected(samples: string[]): boolean {\n  return samples.length > 0 && samples.every(s => props.modelValue.includes(s))\n}\n\nfunction isPartiallySelected(samples: string[]): boolean {\n  if (samples.length === 0) return false\n  const selectedCount = samples.filter(s => props.modelValue.includes(s)).length\n  return selectedCount > 0 && selectedCount < samples.length\n}\n\nfunction isGroupFullySelected(groupName: string): boolean {\n  const group = internalGroups.value.find(g => g.name === groupName)\n  return group ? isFullySelected(group.samples) : false\n}\n\nfunction isGroupPartiallySelected(groupName: string): boolean {\n  const group = internalGroups.value.find(g => g.name === groupName)\n  return group ? isPartiallySelected(group.samples) : false\n}\n\nfunction isMajorGroupFullySelected(majorGroup: MajorGroup): boolean {\n  return isFullySelected(majorGroup.allSamples)\n}\n\nfunction isMajorGroupPartiallySelected(majorGroup: MajorGroup): boolean {\n  return isPartiallySelected(majorGroup.allSamples)\n}\n\n// Expand/collapse\nfunction toggleGroupExpanded(groupName: string) {\n  expandedGroups.value[groupName] = !expandedGroups.value[groupName]\n}\n\nfunction isGroupExpanded(groupName: string): boolean {\n  return !!expandedGroups.value[groupName]\n}\n\nfunction expandAllGroups() {\n  const expanded: Record<string, boolean> = {}\n  for (const major of hierarchicalGroups.value) {\n    expanded[`major:${major.name}`] = true\n    for (const sub of major.subGroups) {\n      expanded[sub.name] = true\n    }\n  }\n  expanded['__ungrouped__'] = true\n  expandedGroups.value = expanded\n}\n\nfunction collapseAllGroups() {\n  expandedGroups.value = {}\n}\n\n// Smart group\nfunction handleSmartGroupApply(result: AutoGroupResult) {\n  emit('smartGroup', result)\n  emit('update:groups', result.groups)\n}\n\n// Group management\nfunction clearGroups() {\n  internalGroups.value = []\n}\n\nfunction deleteMajorGroup(majorGroup: MajorGroup) {\n  internalGroups.value = internalGroups.value.filter(\n    g => !majorGroup.subGroups.some(sg => sg.name === g.name)\n  )\n}\n\nfunction deleteGroup(groupName: string) {\n  internalGroups.value = internalGroups.value.filter(g => g.name !== groupName)\n}\n\nfunction removeSampleFromGroup(sample: string, groupName: string) {\n  internalGroups.value = internalGroups.value.map(g =>\n    g.name === groupName\n      ? { ...g, samples: g.samples.filter((s: string) => s !== sample) }\n      : g\n  )\n}\n\n// Drag and Drop handlers\nfunction handleDragStart(sample: string, sourceGroup: string | null, event: DragEvent) {\n  draggingSample.value = sample\n  dragSourceGroup.value = sourceGroup\n  if (event.dataTransfer) {\n    event.dataTransfer.effectAllowed = 'move'\n    event.dataTransfer.setData('text/plain', sample)\n  }\n}\n\nfunction resetDragState() {\n  draggingSample.value = null\n  dragSourceGroup.value = null\n  dragOverGroup.value = null\n}\n\nfunction handleDragEnd() {\n  resetDragState()\n}\n\nfunction handleDragOver(groupName: string, event: DragEvent) {\n  event.preventDefault()\n  if (event.dataTransfer) {\n    event.dataTransfer.dropEffect = 'move'\n  }\n  dragOverGroup.value = groupName\n}\n\nfunction handleDragLeave() {\n  dragOverGroup.value = null\n}\n\nfunction handleDrop(targetGroupName: string, event: DragEvent) {\n  event.preventDefault()\n\n  const sample = draggingSample.value\n  const sourceGroup = dragSourceGroup.value\n  if (!sample) return\n\n  if (sourceGroup === targetGroupName) {\n    resetDragState()\n    return\n  }\n\n  internalGroups.value = internalGroups.value.map(g => {\n    if (sourceGroup && g.name === sourceGroup) {\n      return { ...g, samples: g.samples.filter((s: string) => s !== sample) }\n    }\n    if (g.name === targetGroupName && !g.samples.includes(sample)) {\n      return { ...g, samples: [...g.samples, sample] }\n    }\n    return g\n  })\n\n  resetDragState()\n}\n\n// Color picker\nfunction openColorPicker(groupName: string, event: Event) {\n  event.stopPropagation()\n  editingGroupColor.value = groupName\n  colorPickerInput.value?.click()\n}\n\nfunction handleColorChange(event: Event) {\n  const target = event.target as HTMLInputElement\n  if (editingGroupColor.value) {\n    internalGroups.value = internalGroups.value.map(g =>\n      g.name === editingGroupColor.value ? { ...g, color: target.value } : g\n    )\n  }\n  editingGroupColor.value = null\n}\n\nfunction getGroupColor(groupName: string): string {\n  const group = internalGroups.value.find(g => g.name === groupName)\n  return group?.color || '#3B82F6'\n}\n\n// New group\nfunction addNewGroup() {\n  if (!newGroupName.value.trim()) return\n\n  const usedColors = new Set(internalGroups.value.map(g => g.color))\n  const availableColor = DEFAULT_COLORS.find(c => !usedColors.has(c)) || DEFAULT_COLORS[0]\n\n  const newGroup: SampleGroup = {\n    name: newGroupName.value.trim(),\n    color: availableColor,\n    samples: [],\n  }\n\n  internalGroups.value = [...internalGroups.value, newGroup]\n  newGroupName.value = ''\n}\n\n</script>\n\n<template>\n  <div class=\"mld-sample-selector\">\n    <!-- Select All Row -->\n    <label class=\"mld-sample-selector__select-all\">\n      <input\n        type=\"checkbox\"\n        :checked=\"isAllSelected\"\n        @change=\"toggleSelectAll\"\n        class=\"mld-sample-selector__checkbox\"\n      />\n      <span class=\"mld-sample-selector__select-all-label\">Select All</span>\n      <span class=\"mld-sample-selector__select-all-count\">{{ samples.length }} samples</span>\n    </label>\n\n    <!-- Action Buttons Row -->\n    <div v-if=\"enableGrouping\" class=\"mld-sample-selector__actions\">\n      <div class=\"mld-sample-selector__actions-row\">\n        <!-- Smart Group Button -->\n        <BaseButton\n          v-if=\"enableSmartGroup\"\n          :variant=\"groupingEnabled ? 'primary' : 'secondary'\"\n          size=\"sm\"\n          :disabled=\"samples.length === 0\"\n          class=\"mld-sample-selector__action-btn\"\n          @click=\"showSmartGroupModal = true\"\n        >\n          <svg class=\"mld-sample-selector__action-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M13 10V3L4 14h7v7l9-11h-7z\" />\n          </svg>\n          <span>Smart Group</span>\n        </BaseButton>\n\n        <!-- Reset Button -->\n        <BaseButton\n          variant=\"ghost\"\n          size=\"sm\"\n          :disabled=\"internalGroups.length === 0\"\n          class=\"mld-sample-selector__action-btn mld-sample-selector__action-btn--reset\"\n          @click=\"clearGroups\"\n          title=\"Clear all groups\"\n        >\n          <svg class=\"mld-sample-selector__action-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 4v5h.582m15.356 2A8.001 8.001 0 004.582 9m0 0H9m11 11v-5h-.581m0 0a8.003 8.003 0 01-15.357-2m15.357 2H15\" />\n          </svg>\n        </BaseButton>\n      </div>\n    </div>\n\n    <!-- Grouped View -->\n    <div v-if=\"groupingEnabled\" class=\"mld-sample-selector__grouped\">\n      <!-- Groups Header -->\n      <div class=\"mld-sample-selector__groups-header\">\n        <span class=\"mld-sample-selector__groups-title\">Groups ({{ internalGroups.length }})</span>\n        <div class=\"mld-sample-selector__groups-controls\">\n          <button type=\"button\" class=\"mld-sample-selector__expand-btn\" @click=\"expandAllGroups\" title=\"Expand all\">\n            <svg class=\"mld-sample-selector__expand-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n              <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M19 9l-7 7-7-7\" />\n            </svg>\n          </button>\n          <button type=\"button\" class=\"mld-sample-selector__expand-btn\" @click=\"collapseAllGroups\" title=\"Collapse all\">\n            <svg class=\"mld-sample-selector__expand-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n              <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n            </svg>\n          </button>\n        </div>\n      </div>\n\n      <!-- Hierarchical Tree -->\n      <div class=\"mld-sample-selector__tree\">\n        <!-- Major Groups (when hierarchy is meaningful) -->\n        <template v-if=\"showHierarchy\">\n          <div\n            v-for=\"majorGroup in hierarchicalGroups\"\n            :key=\"majorGroup.name\"\n            class=\"mld-sample-selector__major-group\"\n          >\n            <!-- Major Group Header -->\n            <div\n              class=\"mld-sample-selector__major-header\"\n              @click=\"toggleGroupExpanded(`major:${majorGroup.name}`)\"\n            >\n              <svg\n                :class=\"[\n                  'mld-sample-selector__chevron',\n                  isGroupExpanded(`major:${majorGroup.name}`) ? 'mld-sample-selector__chevron--open' : '',\n                ]\"\n                fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n              >\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n              </svg>\n\n              <input\n                type=\"checkbox\"\n                :checked=\"isMajorGroupFullySelected(majorGroup)\"\n                :indeterminate=\"isMajorGroupPartiallySelected(majorGroup)\"\n                class=\"mld-sample-selector__checkbox\"\n                :style=\"{ accentColor: majorGroup.color }\"\n                @click.stop\n                @change=\"toggleMajorGroupSamples(majorGroup)\"\n              />\n\n              <div\n                class=\"mld-sample-selector__color-dot mld-sample-selector__color-dot--large\"\n                :style=\"{ backgroundColor: majorGroup.color }\"\n              />\n\n              <span class=\"mld-sample-selector__major-name\">{{ majorGroup.name }}</span>\n\n              <span\n                class=\"mld-sample-selector__count-badge\"\n                :style=\"{ backgroundColor: majorGroup.color + '20', color: majorGroup.color }\"\n              >\n                {{ majorGroup.allSamples.length }}\n              </span>\n\n              <button\n                type=\"button\"\n                class=\"mld-sample-selector__delete-btn mld-sample-selector__delete-btn--hidden\"\n                @click.stop=\"deleteMajorGroup(majorGroup)\"\n                title=\"Remove major group\"\n              >\n                <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                  <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M6 18L18 6M6 6l12 12\" />\n                </svg>\n              </button>\n            </div>\n\n            <!-- Sub Groups (collapsible) -->\n            <Transition name=\"mld-collapse\">\n              <div\n                v-if=\"isGroupExpanded(`major:${majorGroup.name}`)\"\n                class=\"mld-sample-selector__sub-groups\"\n                :style=\"{ borderColor: majorGroup.color + '30' }\"\n              >\n              <div\n                v-for=\"subGroup in majorGroup.subGroups\"\n                :key=\"subGroup.name\"\n                :class=\"[\n                  'mld-sample-selector__sub-group',\n                  dragOverGroup === subGroup.name ? 'mld-sample-selector__sub-group--drag-over' : '',\n                ]\"\n                @dragover=\"handleDragOver(subGroup.name, $event)\"\n                @dragleave=\"handleDragLeave\"\n                @drop=\"handleDrop(subGroup.name, $event)\"\n              >\n                <!-- Sub Group Header -->\n                <div\n                  class=\"mld-sample-selector__sub-header\"\n                  @click=\"toggleGroupExpanded(subGroup.name)\"\n                >\n                  <svg\n                    :class=\"[\n                      'mld-sample-selector__chevron mld-sample-selector__chevron--small',\n                      isGroupExpanded(subGroup.name) ? 'mld-sample-selector__chevron--open' : '',\n                    ]\"\n                    fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n                  >\n                    <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n                  </svg>\n\n                  <input\n                    type=\"checkbox\"\n                    :checked=\"isGroupFullySelected(subGroup.name)\"\n                    :indeterminate=\"isGroupPartiallySelected(subGroup.name)\"\n                    class=\"mld-sample-selector__checkbox mld-sample-selector__checkbox--small\"\n                    :style=\"{ accentColor: subGroup.color }\"\n                    @click.stop\n                    @change=\"toggleGroupSamples(subGroup.name)\"\n                  />\n\n                  <button\n                    type=\"button\"\n                    class=\"mld-sample-selector__color-dot mld-sample-selector__color-dot--clickable\"\n                    :style=\"{ backgroundColor: subGroup.color }\"\n                    @click.stop=\"openColorPicker(subGroup.name, $event)\"\n                    title=\"Click to change color\"\n                  />\n\n                  <span class=\"mld-sample-selector__sub-name\">{{ subGroup.name }}</span>\n\n                  <span\n                    class=\"mld-sample-selector__count-badge mld-sample-selector__count-badge--small\"\n                    :style=\"{ backgroundColor: subGroup.color + '20', color: subGroup.color }\"\n                  >\n                    {{ subGroup.samples.length }}\n                  </span>\n\n                  <button\n                    type=\"button\"\n                    class=\"mld-sample-selector__delete-btn mld-sample-selector__delete-btn--hidden\"\n                    @click.stop=\"deleteGroup(subGroup.name)\"\n                    title=\"Remove sub group\"\n                  >\n                    <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                      <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M6 18L18 6M6 6l12 12\" />\n                    </svg>\n                  </button>\n                </div>\n\n                <!-- Samples (collapsible) -->\n                <Transition name=\"mld-collapse\">\n                  <div\n                    v-if=\"isGroupExpanded(subGroup.name)\"\n                    class=\"mld-sample-selector__samples\"\n                    :style=\"{ borderColor: subGroup.color + '40' }\"\n                  >\n                    <div\n                      v-for=\"sample in subGroup.samples\"\n                      :key=\"sample\"\n                      :class=\"[\n                        'mld-sample-selector__sample',\n                        draggingSample === sample ? 'mld-sample-selector__sample--dragging' : '',\n                      ]\"\n                      draggable=\"true\"\n                      @dragstart=\"handleDragStart(sample, subGroup.name, $event)\"\n                      @dragend=\"handleDragEnd\"\n                    >\n                      <svg class=\"mld-sample-selector__drag-handle\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                        <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 8h16M4 16h16\" />\n                      </svg>\n                      <input\n                        type=\"checkbox\"\n                        :checked=\"modelValue.includes(sample)\"\n                        class=\"mld-sample-selector__checkbox mld-sample-selector__checkbox--tiny\"\n                        :style=\"{ accentColor: subGroup.color }\"\n                        @change=\"toggleSample(sample)\"\n                      />\n                      <span class=\"mld-sample-selector__sample-name\">{{ sample }}</span>\n                      <button\n                        type=\"button\"\n                        class=\"mld-sample-selector__remove-btn\"\n                        @click=\"removeSampleFromGroup(sample, subGroup.name)\"\n                        title=\"Remove from group\"\n                      >\n                        <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                          <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M20 12H4\" />\n                        </svg>\n                      </button>\n                    </div>\n                  </div>\n                </Transition>\n              </div>\n            </div>\n          </Transition>\n        </div>\n        </template>\n\n        <!-- Flat Groups (when no meaningful hierarchy - e.g., level 1) -->\n        <template v-else>\n          <div\n            v-for=\"group in internalGroups\"\n            :key=\"group.name\"\n            :class=\"[\n              'mld-sample-selector__sub-group',\n              dragOverGroup === group.name ? 'mld-sample-selector__sub-group--drag-over' : '',\n            ]\"\n            @dragover=\"handleDragOver(group.name, $event)\"\n            @dragleave=\"handleDragLeave\"\n            @drop=\"handleDrop(group.name, $event)\"\n          >\n            <!-- Group Header -->\n            <div\n              class=\"mld-sample-selector__major-header\"\n              @click=\"toggleGroupExpanded(group.name)\"\n            >\n              <svg\n                :class=\"[\n                  'mld-sample-selector__chevron',\n                  isGroupExpanded(group.name) ? 'mld-sample-selector__chevron--open' : '',\n                ]\"\n                fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n              >\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n              </svg>\n\n              <input\n                type=\"checkbox\"\n                :checked=\"isGroupFullySelected(group.name)\"\n                :indeterminate=\"isGroupPartiallySelected(group.name)\"\n                class=\"mld-sample-selector__checkbox\"\n                :style=\"{ accentColor: group.color }\"\n                @click.stop\n                @change=\"toggleGroupSamples(group.name)\"\n              />\n\n              <button\n                type=\"button\"\n                class=\"mld-sample-selector__color-dot mld-sample-selector__color-dot--large mld-sample-selector__color-dot--clickable\"\n                :style=\"{ backgroundColor: group.color }\"\n                @click.stop=\"openColorPicker(group.name, $event)\"\n                title=\"Click to change color\"\n              />\n\n              <span class=\"mld-sample-selector__major-name\">{{ group.name }}</span>\n\n              <span\n                class=\"mld-sample-selector__count-badge\"\n                :style=\"{ backgroundColor: group.color + '20', color: group.color }\"\n              >\n                {{ group.samples.length }}\n              </span>\n\n              <button\n                type=\"button\"\n                class=\"mld-sample-selector__delete-btn mld-sample-selector__delete-btn--hidden\"\n                @click.stop=\"deleteGroup(group.name)\"\n                title=\"Remove group\"\n              >\n                <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                  <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M6 18L18 6M6 6l12 12\" />\n                </svg>\n              </button>\n            </div>\n\n            <!-- Samples (collapsible) -->\n            <Transition name=\"mld-collapse\">\n              <div\n                v-if=\"isGroupExpanded(group.name)\"\n                class=\"mld-sample-selector__samples\"\n                :style=\"{ borderColor: group.color + '40' }\"\n              >\n                <div\n                  v-for=\"sample in group.samples\"\n                  :key=\"sample\"\n                  :class=\"[\n                    'mld-sample-selector__sample',\n                    draggingSample === sample ? 'mld-sample-selector__sample--dragging' : '',\n                  ]\"\n                  draggable=\"true\"\n                  @dragstart=\"handleDragStart(sample, group.name, $event)\"\n                  @dragend=\"handleDragEnd\"\n                >\n                  <svg class=\"mld-sample-selector__drag-handle\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                    <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 8h16M4 16h16\" />\n                  </svg>\n                  <input\n                    type=\"checkbox\"\n                    :checked=\"modelValue.includes(sample)\"\n                    class=\"mld-sample-selector__checkbox mld-sample-selector__checkbox--tiny\"\n                    :style=\"{ accentColor: group.color }\"\n                    @change=\"toggleSample(sample)\"\n                  />\n                  <span class=\"mld-sample-selector__sample-name\">{{ sample }}</span>\n                  <button\n                    type=\"button\"\n                    class=\"mld-sample-selector__remove-btn\"\n                    @click=\"removeSampleFromGroup(sample, group.name)\"\n                    title=\"Remove from group\"\n                  >\n                    <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                      <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M20 12H4\" />\n                    </svg>\n                  </button>\n                </div>\n              </div>\n            </Transition>\n          </div>\n        </template>\n\n        <!-- Empty state -->\n        <div v-if=\"internalGroups.length === 0\" class=\"mld-sample-selector__empty\">\n          Click Smart Group to auto-group samples\n        </div>\n      </div>\n\n      <!-- Ungrouped Samples Section -->\n      <div v-if=\"ungroupedSamples.length > 0\" class=\"mld-sample-selector__ungrouped\">\n        <div\n          class=\"mld-sample-selector__ungrouped-header\"\n          @click=\"toggleGroupExpanded('__ungrouped__')\"\n        >\n          <svg\n            :class=\"[\n              'mld-sample-selector__chevron',\n              isGroupExpanded('__ungrouped__') ? 'mld-sample-selector__chevron--open' : '',\n            ]\"\n            fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n          >\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n          </svg>\n          <span class=\"mld-sample-selector__ungrouped-label\">Ungrouped</span>\n          <span class=\"mld-sample-selector__ungrouped-count\">{{ ungroupedSamples.length }}</span>\n        </div>\n\n        <Transition name=\"mld-collapse\">\n          <div\n            v-if=\"isGroupExpanded('__ungrouped__')\"\n            class=\"mld-sample-selector__ungrouped-list\"\n          >\n            <div\n              v-for=\"sample in ungroupedSamples\"\n              :key=\"sample\"\n              :class=\"[\n                'mld-sample-selector__sample',\n                draggingSample === sample ? 'mld-sample-selector__sample--dragging' : '',\n              ]\"\n              draggable=\"true\"\n              @dragstart=\"handleDragStart(sample, null, $event)\"\n              @dragend=\"handleDragEnd\"\n            >\n              <svg class=\"mld-sample-selector__drag-handle\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 8h16M4 16h16\" />\n              </svg>\n              <input\n                type=\"checkbox\"\n                :checked=\"modelValue.includes(sample)\"\n                class=\"mld-sample-selector__checkbox mld-sample-selector__checkbox--small\"\n                @change=\"toggleSample(sample)\"\n              />\n              <span class=\"mld-sample-selector__sample-name\">{{ sample }}</span>\n            </div>\n          </div>\n        </Transition>\n      </div>\n\n      <!-- New Group Input -->\n      <div class=\"mld-sample-selector__new-group\">\n        <BaseInput\n          v-model=\"newGroupName\"\n          placeholder=\"New group name...\"\n          class=\"mld-sample-selector__new-group-input\"\n          @keyup.enter=\"addNewGroup\"\n        />\n        <BaseButton\n          variant=\"ghost\"\n          size=\"sm\"\n          :disabled=\"!newGroupName.trim()\"\n          class=\"mld-sample-selector__new-group-btn\"\n          @click=\"addNewGroup\"\n        >\n          Add\n        </BaseButton>\n      </div>\n\n      <!-- Hidden color picker input -->\n      <input\n        ref=\"colorPickerInput\"\n        type=\"color\"\n        class=\"mld-sample-selector__color-input\"\n        :value=\"editingGroupColor ? getGroupColor(editingGroupColor) : '#3B82F6'\"\n        @change=\"handleColorChange\"\n      />\n    </div>\n\n    <!-- Flat View (when no groups) -->\n    <div v-if=\"!groupingEnabled\" class=\"mld-sample-selector__flat\">\n      <!-- Search -->\n      <div class=\"mld-sample-selector__search\">\n        <svg class=\"mld-sample-selector__search-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n          <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M21 21l-6-6m2-5a7 7 0 11-14 0 7 7 0 0114 0z\" />\n        </svg>\n        <input\n          v-model=\"searchQuery\"\n          type=\"text\"\n          placeholder=\"Search samples...\"\n          class=\"mld-sample-selector__search-input\"\n        />\n      </div>\n\n      <!-- Flat samples list -->\n      <div class=\"mld-sample-selector__flat-list\">\n        <div\n          v-for=\"sample in filteredSamples\"\n          :key=\"sample\"\n          class=\"mld-sample-selector__flat-item\"\n        >\n          <input\n            type=\"checkbox\"\n            :checked=\"modelValue.includes(sample)\"\n            class=\"mld-sample-selector__checkbox\"\n            @change=\"toggleSample(sample)\"\n          />\n          <span class=\"mld-sample-selector__flat-name\">{{ sample }}</span>\n        </div>\n\n        <div v-if=\"filteredSamples.length === 0 && searchQuery.trim()\" class=\"mld-sample-selector__empty\">\n          No samples match \"{{ searchQuery }}\"\n        </div>\n      </div>\n    </div>\n\n    <!-- Smart Grouping Modal -->\n    <AutoGroupModal\n      v-model=\"showSmartGroupModal\"\n      :samples=\"samples\"\n      @apply=\"handleSmartGroupApply\"\n    />\n  </div>\n</template>\n\n<style>\n@import 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package/dist/components/index.d.ts

@@ -50,6 +50,7 @@ export { default as PlateMapEditor } from './PlateMapEditor.vue';
 export { default as ExperimentTimeline } from './ExperimentTimeline.vue';
 export { default as SampleSelector } from './SampleSelector.vue';
 export { default as GroupingModal } from './GroupingModal.vue';
+export { default as AutoGroupModal } from './AutoGroupModal.vue';
 export { default as GroupAssigner } from './GroupAssigner.vue';
 export { default as MoleculeInput } from './MoleculeInput.vue';
 export { default as ConcentrationInput } from './ConcentrationInput.vue';

package/dist/components/index.js

@@ -101,54 +101,56 @@ import { default as default52 } from "./SampleSelector.vue.js";
 /* empty css                    */
 import { default as default53 } from "./GroupingModal.vue.js";
 /* empty css                   */
-import { default as default54 } from "./GroupAssigner.vue.js";
+import { default as default54 } from "./AutoGroupModal.vue.js";
+/* empty css                    */
+import { default as default55 } from "./GroupAssigner.vue.js";
 /* empty css                   */
-import { default as default55 } from "./MoleculeInput.vue.js";
+import { default as default56 } from "./MoleculeInput.vue.js";
 /* empty css                   */
-import { default as default56 } from "./ConcentrationInput.vue.js";
+import { default as default57 } from "./ConcentrationInput.vue.js";
 /* empty css                        */
-import { default as default57 } from "./DoseCalculator.vue.js";
+import { default as default58 } from "./DoseCalculator.vue.js";
 /* empty css                    */
-import { default as default58 } from "./ReagentList.vue.js";
+import { default as default59 } from "./ReagentList.vue.js";
 /* empty css                 */
-import { default as default59 } from "./SampleHierarchyTree.vue.js";
+import { default as default60 } from "./SampleHierarchyTree.vue.js";
 /* empty css                         */
-import { default as default60 } from "./ProtocolStepEditor.vue.js";
+import { default as default61 } from "./ProtocolStepEditor.vue.js";
 /* empty css                        */
-import { default as default61 } from "./ScientificNumber.vue.js";
+import { default as default62 } from "./ScientificNumber.vue.js";
 /* empty css                      */
-import { default as default62 } from "./ChemicalFormula.vue.js";
+import { default as default63 } from "./ChemicalFormula.vue.js";
 /* empty css                     */
-import { default as default63 } from "./FormulaInput.vue.js";
+import { default as default64 } from "./FormulaInput.vue.js";
 /* empty css                  */
-import { default as default64 } from "./SequenceInput.vue.js";
+import { default as default65 } from "./SequenceInput.vue.js";
 /* empty css                   */
-import { default as default65 } from "./UnitInput.vue.js";
+import { default as default66 } from "./UnitInput.vue.js";
 /* empty css               */
-import { default as default66 } from "./StepWizard.vue.js";
+import { default as default67 } from "./StepWizard.vue.js";
 /* empty css                */
-import { default as default67 } from "./AuditTrail.vue.js";
+import { default as default68 } from "./AuditTrail.vue.js";
 /* empty css                */
-import { default as default68 } from "./BatchProgressList.vue.js";
+import { default as default69 } from "./BatchProgressList.vue.js";
 /* empty css                       */
-import { default as default69 } from "./FormBuilder.vue.js";
+import { default as default70 } from "./FormBuilder.vue.js";
 /* empty css                 */
-import { default as default70 } from "./FormSection.vue.js";
+import { default as default71 } from "./FormSection.vue.js";
 /* empty css                 */
-import { default as default71 } from "./FormActions.vue.js";
+import { default as default72 } from "./FormActions.vue.js";
 /* empty css                 */
-import { default as default72 } from "./FormFieldRenderer.vue.js";
-import { default as default73 } from "./ExperimentDataViewer.vue.js";
+import { default as default73 } from "./FormFieldRenderer.vue.js";
+import { default as default74 } from "./ExperimentDataViewer.vue.js";
 /* empty css                          */
-import { default as default74 } from "./ExperimentCodeBadge.vue.js";
+import { default as default75 } from "./ExperimentCodeBadge.vue.js";
 /* empty css                         */
-import { default as default75 } from "./DateTimePicker.vue.js";
+import { default as default76 } from "./DateTimePicker.vue.js";
 /* empty css                    */
-import { default as default76 } from "./TimeRangeInput.vue.js";
+import { default as default77 } from "./TimeRangeInput.vue.js";
 /* empty css                    */
-import { default as default77 } from "./ScheduleCalendar.vue.js";
+import { default as default78 } from "./ScheduleCalendar.vue.js";
 /* empty css                      */
-import { default as default78 } from "./ResourceCard.vue.js";
+import { default as default79 } from "./ResourceCard.vue.js";
 /* empty css                  */
 export {
   default25 as AlertBox,
@@ -156,7 +158,8 @@ export {
   default33 as AppLayout,
   default32 as AppSidebar,
   default31 as AppTopBar,
-  default67 as AuditTrail,
+  default68 as AuditTrail,
+  default54 as AutoGroupModal,
   default40 as Avatar,
   default2 as BaseButton,
   default6 as BaseCheckbox,
@@ -169,64 +172,64 @@ export {
   default11 as BaseTabs,
   default4 as BaseTextarea,
   default7 as BaseToggle,
-  default68 as BatchProgressList,
+  default69 as BatchProgressList,
   default42 as Breadcrumb,
   default17 as Calendar,
   default45 as ChartContainer,
-  default62 as ChemicalFormula,
+  default63 as ChemicalFormula,
   default30 as CollapsibleCard,
   default10 as ColorSlider,
-  default56 as ConcentrationInput,
+  default57 as ConcentrationInput,
   default44 as ConfirmDialog,
   default18 as DataFrame,
   default20 as DatePicker,
-  default75 as DateTimePicker,
+  default76 as DateTimePicker,
   default37 as Divider,
-  default57 as DoseCalculator,
+  default58 as DoseCalculator,
   default16 as DropdownButton,
   default41 as EmptyState,
-  default74 as ExperimentCodeBadge,
-  default73 as ExperimentDataViewer,
+  default75 as ExperimentCodeBadge,
+  default74 as ExperimentDataViewer,
   default51 as ExperimentTimeline,
   default24 as FileUploader,
-  default71 as FormActions,
-  default69 as FormBuilder,
+  default72 as FormActions,
+  default70 as FormBuilder,
   default19 as FormField,
-  default72 as FormFieldRenderer,
-  default70 as FormSection,
-  default63 as FormulaInput,
-  default54 as GroupAssigner,
+  default73 as FormFieldRenderer,
+  default71 as FormSection,
+  default64 as FormulaInput,
+  default55 as GroupAssigner,
   default53 as GroupingModal,
   default27 as IconButton,
   default36 as LoadingSpinner,
-  default55 as MoleculeInput,
+  default56 as MoleculeInput,
   default14 as MultiSelect,
   default23 as NumberInput,
   default50 as PlateMapEditor,
   default39 as ProgressBar,
-  default60 as ProtocolStepEditor,
+  default61 as ProtocolStepEditor,
   default48 as RackEditor,
-  default58 as ReagentList,
-  default78 as ResourceCard,
-  default59 as SampleHierarchyTree,
+  default59 as ReagentList,
+  default79 as ResourceCard,
+  default60 as SampleHierarchyTree,
   default49 as SampleLegend,
   default52 as SampleSelector,
-  default77 as ScheduleCalendar,
-  default61 as ScientificNumber,
+  default78 as ScheduleCalendar,
+  default62 as ScientificNumber,
   default13 as SegmentedControl,
-  default64 as SequenceInput,
+  default65 as SequenceInput,
   default29 as SettingsButton,
   default46 as SettingsModal,
   default35 as Skeleton,
   default38 as StatusIndicator,
-  default66 as StepWizard,
+  default67 as StepWizard,
   default22 as TagsInput,
   default28 as ThemeToggle,
   default21 as TimePicker,
-  default76 as TimeRangeInput,
+  default77 as TimeRangeInput,
   default26 as ToastNotification,
   default43 as Tooltip,
-  default65 as UnitInput,
+  default66 as UnitInput,
   default47 as WellPlate
 };
 //# sourceMappingURL=index.js.map

package/dist/components/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;"}
+{"version":3,"file":"index.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;"}

package/dist/composables/index.d.ts

@@ -16,5 +16,6 @@ export { useSequenceUtils, type SequenceType, type SequenceStats, } from './useS
 export { parseTime, formatTime, generateTimeSlots, rangesOverlap, durationMinutes, formatDuration, isTimeInRange, findAvailableSlots, snapToSlot, addMinutes, compareTime, } from './useTimeUtils';
 export { useScheduleDrag } from './useScheduleDrag';
 export { useFormBuilder, evaluateCondition } from './useFormBuilder';
+export { useAutoGroup, DEFAULT_COLORS } from './useAutoGroup';
 export { usePluginConfig, type UsePluginConfigReturn } from './usePluginConfig';
 export { getFieldRegistryEntry, getTypeDefault, type RegistryEntry, } from './formBuilderRegistry';

package/dist/composables/index.js

@@ -16,10 +16,12 @@ import { useSequenceUtils } from "./useSequenceUtils.js";
 import { addMinutes, compareTime, durationMinutes, findAvailableSlots, formatDuration, formatTime, generateTimeSlots, isTimeInRange, parseTime, rangesOverlap, snapToSlot } from "./useTimeUtils.js";
 import { useScheduleDrag } from "./useScheduleDrag.js";
 import { evaluateCondition, useFormBuilder } from "./useFormBuilder.js";
+import { DEFAULT_COLORS, useAutoGroup } from "./useAutoGroup.js";
 import { usePluginConfig } from "./usePluginConfig.js";
 import { getFieldRegistryEntry, getTypeDefault } from "./formBuilderRegistry.js";
 export {
   ATOMIC_WEIGHTS,
+  DEFAULT_COLORS,
   addMinutes,
   compareTime,
   durationMinutes,
@@ -38,6 +40,7 @@ export {
   useAsync,
   useAsyncBatch,
   useAuth,
+  useAutoGroup,
   useChemicalFormula,
   useConcentrationUnits,
   useDoseCalculator,

package/dist/composables/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;"}
+{"version":3,"file":"index.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;"}

package/dist/composables/useAutoGroup.d.ts

@@ -0,0 +1,80 @@
+import { InputMode, OutlierAction, OutlierInfo, ColumnInfo, MetadataRow, AutoGroupResult, ParsedCsvData } from '../types/auto-group';
+import { SampleGroup } from '../types/components';
+export declare const DEFAULT_COLORS: string[];
+export declare function analyzeDelimiter(lines: string[]): {
+    delimiter: string;
+    dominantFieldCount: number;
+    minFieldCount: number;
+    consistency: number;
+};
+export declare function detectOutliers(lines: string[], delimiter: string, minFieldCount: number): OutlierInfo[];
+export declare function extractColumns(samples: string[], delimiter: string, minFieldCount: number): ColumnInfo[];
+export declare function parseCSVLine(line: string): string[];
+export declare function parseCSV(text: string): ParsedCsvData;
+export declare function computeGroups(allSamples: string[], columns: ColumnInfo[], enabledFields: Set<number>, outlierActions: Map<number, OutlierAction>, delimiter: string, minFieldCount: number): {
+    groups: SampleGroup[];
+    metadata: MetadataRow[];
+    excludedSamples: string[];
+};
+export declare function useAutoGroup(): {
+    inputMode: import('vue').Ref<InputMode, InputMode>;
+    rawText: import('vue').Ref<string, string>;
+    csvData: import('vue').Ref<{
+        columns: string[];
+        rows: Record<string, string>[];
+        sampleColumn: string;
+    } | null, ParsedCsvData | {
+        columns: string[];
+        rows: Record<string, string>[];
+        sampleColumn: string;
+    } | null>;
+    delimiter: import('vue').Ref<string, string>;
+    dominantFieldCount: import('vue').Ref<number, number>;
+    minFieldCount: import('vue').Ref<number, number>;
+    outliers: import('vue').Ref<{
+        sample: string;
+        index: number;
+        fieldCount: number;
+        action: OutlierAction;
+    }[], OutlierInfo[] | {
+        sample: string;
+        index: number;
+        fieldCount: number;
+        action: OutlierAction;
+    }[]>;
+    fields: import('vue').Ref<{
+        index: number;
+        name: string;
+        uniqueValues: string[];
+        cardinality: number;
+        type?: "prefix" | "suffix" | undefined;
+    }[], ColumnInfo[] | {
+        index: number;
+        name: string;
+        uniqueValues: string[];
+        cardinality: number;
+        type?: "prefix" | "suffix" | undefined;
+    }[]>;
+    fieldNames: import('vue').Ref<Record<number, string>, Record<number, string>>;
+    enabledFields: import('vue').Ref<Set<number> & Omit<Set<number>, keyof Set<any>>, Set<number> | (Set<number> & Omit<Set<number>, keyof Set<any>>)>;
+    samples: import('vue').ComputedRef<string[]>;
+    hasOutliers: import('vue').ComputedRef<boolean>;
+    conformingSamples: import('vue').ComputedRef<string[]>;
+    groups: import('vue').ComputedRef<SampleGroup[]>;
+    metadata: import('vue').ComputedRef<MetadataRow[]>;
+    excludedSamples: import('vue').ComputedRef<string[]>;
+    result: import('vue').ComputedRef<AutoGroupResult>;
+    effectiveColumns: import('vue').ComputedRef<{
+        name: string;
+        index: number;
+        uniqueValues: string[];
+        cardinality: number;
+        type?: "prefix" | "suffix" | undefined;
+    }[]>;
+    parseInput: () => void;
+    setOutlierAction: (index: number, action: OutlierAction) => void;
+    setAllOutlierActions: (action: OutlierAction) => void;
+    toggleField: (index: number) => void;
+    renameField: (index: number, name: string) => void;
+    reset: () => void;
+};