@morscherlab/mld-sdk 0.6.0

package/dist/composables/useProtocolTemplates.js

@@ -0,0 +1,437 @@
+import { ref, computed } from "vue";
+const BUILT_IN_TEMPLATES = [
+  {
+    id: "builtin-incubation",
+    type: "incubation",
+    name: "Incubation",
+    description: "Incubate samples at specified conditions",
+    defaultDuration: 60,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: "temperature",
+        label: "Temperature",
+        type: "temperature",
+        unit: "°C",
+        required: true,
+        default: 37,
+        min: -80,
+        max: 100
+      },
+      {
+        key: "duration",
+        label: "Duration",
+        type: "duration",
+        unit: "hours",
+        required: true,
+        default: 24,
+        min: 0
+      },
+      {
+        key: "co2",
+        label: "CO2",
+        type: "number",
+        unit: "%",
+        required: false,
+        default: 5,
+        min: 0,
+        max: 100
+      },
+      {
+        key: "humidity",
+        label: "Humidity",
+        type: "number",
+        unit: "%",
+        required: false,
+        default: 95,
+        min: 0,
+        max: 100
+      }
+    ]
+  },
+  {
+    id: "builtin-wash",
+    type: "wash",
+    name: "Wash",
+    description: "Wash samples with buffer",
+    defaultDuration: 5,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: "buffer",
+        label: "Buffer",
+        type: "select",
+        required: true,
+        default: "PBS",
+        options: [
+          { value: "PBS", label: "PBS" },
+          { value: "PBST", label: "PBST" },
+          { value: "TBS", label: "TBS" },
+          { value: "TBST", label: "TBST" },
+          { value: "Water", label: "Water" },
+          { value: "Other", label: "Other" }
+        ]
+      },
+      {
+        key: "volume",
+        label: "Volume",
+        type: "number",
+        unit: "µL",
+        required: true,
+        default: 200,
+        min: 0
+      },
+      {
+        key: "cycles",
+        label: "Wash Cycles",
+        type: "number",
+        required: true,
+        default: 3,
+        min: 1,
+        max: 10
+      }
+    ]
+  },
+  {
+    id: "builtin-addition",
+    type: "addition",
+    name: "Addition",
+    description: "Add reagent or compound to samples",
+    defaultDuration: 5,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: "reagent",
+        label: "Reagent",
+        type: "text",
+        required: true,
+        placeholder: "Enter reagent name"
+      },
+      {
+        key: "volume",
+        label: "Volume",
+        type: "number",
+        unit: "µL",
+        required: true,
+        default: 100,
+        min: 0
+      },
+      {
+        key: "concentration",
+        label: "Concentration",
+        type: "concentration",
+        required: false
+      }
+    ]
+  },
+  {
+    id: "builtin-measurement",
+    type: "measurement",
+    name: "Measurement",
+    description: "Take measurements using specified instrument",
+    defaultDuration: 15,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: "instrument",
+        label: "Instrument",
+        type: "select",
+        required: true,
+        options: [
+          { value: "plate_reader", label: "Plate Reader" },
+          { value: "microscope", label: "Microscope" },
+          { value: "flow_cytometer", label: "Flow Cytometer" },
+          { value: "spectrophotometer", label: "Spectrophotometer" },
+          { value: "other", label: "Other" }
+        ]
+      },
+      {
+        key: "readout",
+        label: "Readout Type",
+        type: "text",
+        required: false,
+        placeholder: "e.g., Absorbance 450nm"
+      },
+      {
+        key: "notes",
+        label: "Parameters",
+        type: "text",
+        required: false,
+        placeholder: "Additional parameters"
+      }
+    ]
+  },
+  {
+    id: "builtin-centrifuge",
+    type: "centrifuge",
+    name: "Centrifuge",
+    description: "Centrifuge samples",
+    defaultDuration: 10,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: "speed",
+        label: "Speed",
+        type: "number",
+        unit: "RPM",
+        required: true,
+        default: 1e3,
+        min: 100,
+        max: 2e4
+      },
+      {
+        key: "duration",
+        label: "Duration",
+        type: "number",
+        unit: "min",
+        required: true,
+        default: 5,
+        min: 1
+      },
+      {
+        key: "temperature",
+        label: "Temperature",
+        type: "temperature",
+        unit: "°C",
+        required: false,
+        default: 4,
+        min: -10,
+        max: 40
+      }
+    ]
+  },
+  {
+    id: "builtin-transfer",
+    type: "transfer",
+    name: "Transfer",
+    description: "Transfer samples between containers",
+    defaultDuration: 10,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: "source",
+        label: "Source",
+        type: "text",
+        required: true,
+        placeholder: "Source container"
+      },
+      {
+        key: "destination",
+        label: "Destination",
+        type: "text",
+        required: true,
+        placeholder: "Destination container"
+      },
+      {
+        key: "volume",
+        label: "Volume",
+        type: "number",
+        unit: "µL",
+        required: true,
+        default: 100,
+        min: 0
+      }
+    ]
+  },
+  {
+    id: "builtin-mix",
+    type: "mix",
+    name: "Mix",
+    description: "Mix samples",
+    defaultDuration: 5,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: "method",
+        label: "Method",
+        type: "select",
+        required: true,
+        default: "pipette",
+        options: [
+          { value: "pipette", label: "Pipette mixing" },
+          { value: "vortex", label: "Vortex" },
+          { value: "shaker", label: "Orbital shaker" },
+          { value: "inversion", label: "Inversion" }
+        ]
+      },
+      {
+        key: "duration",
+        label: "Duration",
+        type: "number",
+        unit: "sec",
+        required: false,
+        default: 30,
+        min: 1
+      },
+      {
+        key: "speed",
+        label: "Speed/Intensity",
+        type: "text",
+        required: false,
+        placeholder: "e.g., 300 RPM"
+      }
+    ]
+  },
+  {
+    id: "builtin-custom",
+    type: "custom",
+    name: "Custom Step",
+    description: "Custom protocol step",
+    defaultDuration: 15,
+    isBuiltIn: true,
+    parameters: [
+      {
+        key: "description",
+        label: "Description",
+        type: "text",
+        required: true,
+        placeholder: "Describe the step"
+      },
+      {
+        key: "notes",
+        label: "Notes",
+        type: "text",
+        required: false,
+        placeholder: "Additional notes"
+      }
+    ]
+  }
+];
+const STORAGE_KEY = "mld-custom-protocol-templates";
+function loadCustomTemplates() {
+  try {
+    const stored = localStorage.getItem(STORAGE_KEY);
+    if (stored) {
+      return JSON.parse(stored);
+    }
+  } catch {
+  }
+  return [];
+}
+function saveCustomTemplatesToStorage(templates) {
+  try {
+    localStorage.setItem(STORAGE_KEY, JSON.stringify(templates));
+  } catch {
+  }
+}
+function useProtocolTemplates() {
+  const customTemplates = ref(loadCustomTemplates());
+  const allTemplates = computed(() => {
+    return [...BUILT_IN_TEMPLATES, ...customTemplates.value];
+  });
+  function getTemplateByType(type) {
+    return customTemplates.value.find((t) => t.type === type) || BUILT_IN_TEMPLATES.find((t) => t.type === type);
+  }
+  function getTemplateById(id) {
+    return customTemplates.value.find((t) => t.id === id) || BUILT_IN_TEMPLATES.find((t) => t.id === id);
+  }
+  function saveCustomTemplate(template) {
+    const newTemplate = {
+      ...template,
+      isBuiltIn: false,
+      id: template.id || `custom-${Date.now()}`
+    };
+    const index = customTemplates.value.findIndex((t) => t.id === newTemplate.id);
+    if (index >= 0) {
+      customTemplates.value[index] = newTemplate;
+    } else {
+      customTemplates.value.push(newTemplate);
+    }
+    saveCustomTemplatesToStorage(customTemplates.value);
+  }
+  function deleteCustomTemplate(templateId) {
+    const index = customTemplates.value.findIndex((t) => t.id === templateId);
+    if (index >= 0) {
+      customTemplates.value.splice(index, 1);
+      saveCustomTemplatesToStorage(customTemplates.value);
+    }
+  }
+  function validateStep(step, template) {
+    var _a, _b;
+    const errors = {};
+    if (!step.name || step.name.trim() === "") {
+      errors.name = "Step name is required";
+    }
+    for (const param of template.parameters) {
+      if (param.required) {
+        const value = (_a = step.parameters) == null ? void 0 : _a[param.key];
+        if (value === void 0 || value === null || value === "") {
+          errors[param.key] = `${param.label} is required`;
+        }
+      }
+      if (param.type === "number" || param.type === "temperature" || param.type === "duration") {
+        const value = (_b = step.parameters) == null ? void 0 : _b[param.key];
+        if (value !== void 0 && value !== null && value !== "") {
+          const numValue = Number(value);
+          if (isNaN(numValue)) {
+            errors[param.key] = `${param.label} must be a number`;
+          } else {
+            if (param.min !== void 0 && numValue < param.min) {
+              errors[param.key] = `${param.label} must be at least ${param.min}`;
+            }
+            if (param.max !== void 0 && numValue > param.max) {
+              errors[param.key] = `${param.label} must be at most ${param.max}`;
+            }
+          }
+        }
+      }
+    }
+    return {
+      valid: Object.keys(errors).length === 0,
+      errors
+    };
+  }
+  function createStepFromTemplate(template, overrides) {
+    const parameters = {};
+    for (const param of template.parameters) {
+      if (param.default !== void 0) {
+        parameters[param.key] = param.default;
+      }
+    }
+    return {
+      id: `step-${Date.now()}-${Math.random().toString(36).slice(2, 9)}`,
+      type: template.type,
+      name: template.name,
+      description: template.description,
+      duration: template.defaultDuration,
+      status: "pending",
+      parameters,
+      order: 0,
+      ...overrides
+    };
+  }
+  function formatParameterValue(value, param) {
+    if (value === void 0 || value === null || value === "") {
+      return "-";
+    }
+    if (param.type === "select" && param.options) {
+      const option = param.options.find((o) => o.value === value);
+      if (option) return option.label;
+    }
+    if (param.type === "concentration" && typeof value === "object") {
+      const conc = value;
+      return `${conc.value} ${conc.unit}`;
+    }
+    const strValue = String(value);
+    if (param.unit) {
+      return `${strValue} ${param.unit}`;
+    }
+    return strValue;
+  }
+  return {
+    builtInTemplates: BUILT_IN_TEMPLATES,
+    customTemplates,
+    allTemplates,
+    getTemplateByType,
+    getTemplateById,
+    saveCustomTemplate,
+    deleteCustomTemplate,
+    validateStep,
+    createStepFromTemplate,
+    formatParameterValue
+  };
+}
+export {
+  useProtocolTemplates
+};
+//# sourceMappingURL=useProtocolTemplates.js.map

package/dist/composables/useProtocolTemplates.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"useProtocolTemplates.js","sources":["../../src/composables/useProtocolTemplates.ts"],"sourcesContent":["import { ref, computed, type Ref, type ComputedRef } from 'vue'\nimport type { ProtocolStep, ProtocolStepType, ProtocolStepStatus } from '../types'\n\n// Parameter definition for step templates\nexport interface ParameterDefinition {\n  key: string\n  label: string\n  type: 'number' | 'text' | 'select' | 'concentration' | 'temperature' | 'duration' | 'reagent'\n  unit?: string\n  options?: Array<{ value: string; label: string }>\n  required?: boolean\n  default?: unknown\n  min?: number\n  max?: number\n  placeholder?: string\n}\n\n// Step template definition\nexport interface StepTemplate {\n  id: string\n  type: ProtocolStepType\n  name: string\n  description?: string\n  defaultDuration?: number\n  parameters: ParameterDefinition[]\n  isBuiltIn?: boolean\n}\n\n// Validation result\nexport interface ValidationResult {\n  valid: boolean\n  errors: Record<string, string>\n}\n\nexport interface UseProtocolTemplatesReturn {\n  builtInTemplates: StepTemplate[]\n  customTemplates: Ref<StepTemplate[]>\n  allTemplates: ComputedRef<StepTemplate[]>\n  getTemplateByType: (type: ProtocolStepType) => StepTemplate | undefined\n  getTemplateById: (id: string) => StepTemplate | undefined\n  saveCustomTemplate: (template: StepTemplate) => void\n  deleteCustomTemplate: (templateId: string) => void\n  validateStep: (step: ProtocolStep, template: StepTemplate) => ValidationResult\n  createStepFromTemplate: (template: StepTemplate, overrides?: Partial<ProtocolStep>) => ProtocolStep\n  formatParameterValue: (value: unknown, param: ParameterDefinition) => string\n}\n\n// Built-in templates\nconst BUILT_IN_TEMPLATES: StepTemplate[] = [\n  {\n    id: 'builtin-incubation',\n    type: 'incubation',\n    name: 'Incubation',\n    description: 'Incubate samples at specified conditions',\n    defaultDuration: 60,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'temperature',\n        label: 'Temperature',\n        type: 'temperature',\n        unit: '°C',\n        required: true,\n        default: 37,\n        min: -80,\n        max: 100,\n      },\n      {\n        key: 'duration',\n        label: 'Duration',\n        type: 'duration',\n        unit: 'hours',\n        required: true,\n        default: 24,\n        min: 0,\n      },\n      {\n        key: 'co2',\n        label: 'CO2',\n        type: 'number',\n        unit: '%',\n        required: false,\n        default: 5,\n        min: 0,\n        max: 100,\n      },\n      {\n        key: 'humidity',\n        label: 'Humidity',\n        type: 'number',\n        unit: '%',\n        required: false,\n        default: 95,\n        min: 0,\n        max: 100,\n      },\n    ],\n  },\n  {\n    id: 'builtin-wash',\n    type: 'wash',\n    name: 'Wash',\n    description: 'Wash samples with buffer',\n    defaultDuration: 5,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'buffer',\n        label: 'Buffer',\n        type: 'select',\n        required: true,\n        default: 'PBS',\n        options: [\n          { value: 'PBS', label: 'PBS' },\n          { value: 'PBST', label: 'PBST' },\n          { value: 'TBS', label: 'TBS' },\n          { value: 'TBST', label: 'TBST' },\n          { value: 'Water', label: 'Water' },\n          { value: 'Other', label: 'Other' },\n        ],\n      },\n      {\n        key: 'volume',\n        label: 'Volume',\n        type: 'number',\n        unit: 'µL',\n        required: true,\n        default: 200,\n        min: 0,\n      },\n      {\n        key: 'cycles',\n        label: 'Wash Cycles',\n        type: 'number',\n        required: true,\n        default: 3,\n        min: 1,\n        max: 10,\n      },\n    ],\n  },\n  {\n    id: 'builtin-addition',\n    type: 'addition',\n    name: 'Addition',\n    description: 'Add reagent or compound to samples',\n    defaultDuration: 5,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'reagent',\n        label: 'Reagent',\n        type: 'text',\n        required: true,\n        placeholder: 'Enter reagent name',\n      },\n      {\n        key: 'volume',\n        label: 'Volume',\n        type: 'number',\n        unit: 'µL',\n        required: true,\n        default: 100,\n        min: 0,\n      },\n      {\n        key: 'concentration',\n        label: 'Concentration',\n        type: 'concentration',\n        required: false,\n      },\n    ],\n  },\n  {\n    id: 'builtin-measurement',\n    type: 'measurement',\n    name: 'Measurement',\n    description: 'Take measurements using specified instrument',\n    defaultDuration: 15,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'instrument',\n        label: 'Instrument',\n        type: 'select',\n        required: true,\n        options: [\n          { value: 'plate_reader', label: 'Plate Reader' },\n          { value: 'microscope', label: 'Microscope' },\n          { value: 'flow_cytometer', label: 'Flow Cytometer' },\n          { value: 'spectrophotometer', label: 'Spectrophotometer' },\n          { value: 'other', label: 'Other' },\n        ],\n      },\n      {\n        key: 'readout',\n        label: 'Readout Type',\n        type: 'text',\n        required: false,\n        placeholder: 'e.g., Absorbance 450nm',\n      },\n      {\n        key: 'notes',\n        label: 'Parameters',\n        type: 'text',\n        required: false,\n        placeholder: 'Additional parameters',\n      },\n    ],\n  },\n  {\n    id: 'builtin-centrifuge',\n    type: 'centrifuge',\n    name: 'Centrifuge',\n    description: 'Centrifuge samples',\n    defaultDuration: 10,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'speed',\n        label: 'Speed',\n        type: 'number',\n        unit: 'RPM',\n        required: true,\n        default: 1000,\n        min: 100,\n        max: 20000,\n      },\n      {\n        key: 'duration',\n        label: 'Duration',\n        type: 'number',\n        unit: 'min',\n        required: true,\n        default: 5,\n        min: 1,\n      },\n      {\n        key: 'temperature',\n        label: 'Temperature',\n        type: 'temperature',\n        unit: '°C',\n        required: false,\n        default: 4,\n        min: -10,\n        max: 40,\n      },\n    ],\n  },\n  {\n    id: 'builtin-transfer',\n    type: 'transfer',\n    name: 'Transfer',\n    description: 'Transfer samples between containers',\n    defaultDuration: 10,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'source',\n        label: 'Source',\n        type: 'text',\n        required: true,\n        placeholder: 'Source container',\n      },\n      {\n        key: 'destination',\n        label: 'Destination',\n        type: 'text',\n        required: true,\n        placeholder: 'Destination container',\n      },\n      {\n        key: 'volume',\n        label: 'Volume',\n        type: 'number',\n        unit: 'µL',\n        required: true,\n        default: 100,\n        min: 0,\n      },\n    ],\n  },\n  {\n    id: 'builtin-mix',\n    type: 'mix',\n    name: 'Mix',\n    description: 'Mix samples',\n    defaultDuration: 5,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'method',\n        label: 'Method',\n        type: 'select',\n        required: true,\n        default: 'pipette',\n        options: [\n          { value: 'pipette', label: 'Pipette mixing' },\n          { value: 'vortex', label: 'Vortex' },\n          { value: 'shaker', label: 'Orbital shaker' },\n          { value: 'inversion', label: 'Inversion' },\n        ],\n      },\n      {\n        key: 'duration',\n        label: 'Duration',\n        type: 'number',\n        unit: 'sec',\n        required: false,\n        default: 30,\n        min: 1,\n      },\n      {\n        key: 'speed',\n        label: 'Speed/Intensity',\n        type: 'text',\n        required: false,\n        placeholder: 'e.g., 300 RPM',\n      },\n    ],\n  },\n  {\n    id: 'builtin-custom',\n    type: 'custom',\n    name: 'Custom Step',\n    description: 'Custom protocol step',\n    defaultDuration: 15,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'description',\n        label: 'Description',\n        type: 'text',\n        required: true,\n        placeholder: 'Describe the step',\n      },\n      {\n        key: 'notes',\n        label: 'Notes',\n        type: 'text',\n        required: false,\n        placeholder: 'Additional notes',\n      },\n    ],\n  },\n]\n\n// Storage key for custom templates\nconst STORAGE_KEY = 'mld-custom-protocol-templates'\n\nfunction loadCustomTemplates(): StepTemplate[] {\n  try {\n    const stored = localStorage.getItem(STORAGE_KEY)\n    if (stored) {\n      return JSON.parse(stored)\n    }\n  } catch {\n    // Ignore errors\n  }\n  return []\n}\n\nfunction saveCustomTemplatesToStorage(templates: StepTemplate[]) {\n  try {\n    localStorage.setItem(STORAGE_KEY, JSON.stringify(templates))\n  } catch {\n    // Ignore errors\n  }\n}\n\nexport function useProtocolTemplates(): UseProtocolTemplatesReturn {\n  const customTemplates = ref<StepTemplate[]>(loadCustomTemplates())\n\n  const allTemplates = computed(() => {\n    return [...BUILT_IN_TEMPLATES, ...customTemplates.value]\n  })\n\n  function getTemplateByType(type: ProtocolStepType): StepTemplate | undefined {\n    // First check custom templates, then built-in\n    return (\n      customTemplates.value.find((t) => t.type === type) ||\n      BUILT_IN_TEMPLATES.find((t) => t.type === type)\n    )\n  }\n\n  function getTemplateById(id: string): StepTemplate | undefined {\n    return (\n      customTemplates.value.find((t) => t.id === id) ||\n      BUILT_IN_TEMPLATES.find((t) => t.id === id)\n    )\n  }\n\n  function saveCustomTemplate(template: StepTemplate) {\n    const newTemplate = {\n      ...template,\n      isBuiltIn: false,\n      id: template.id || `custom-${Date.now()}`,\n    }\n\n    const index = customTemplates.value.findIndex((t) => t.id === newTemplate.id)\n    if (index >= 0) {\n      customTemplates.value[index] = newTemplate\n    } else {\n      customTemplates.value.push(newTemplate)\n    }\n\n    saveCustomTemplatesToStorage(customTemplates.value)\n  }\n\n  function deleteCustomTemplate(templateId: string) {\n    const index = customTemplates.value.findIndex((t) => t.id === templateId)\n    if (index >= 0) {\n      customTemplates.value.splice(index, 1)\n      saveCustomTemplatesToStorage(customTemplates.value)\n    }\n  }\n\n  function validateStep(step: ProtocolStep, template: StepTemplate): ValidationResult {\n    const errors: Record<string, string> = {}\n\n    if (!step.name || step.name.trim() === '') {\n      errors.name = 'Step name is required'\n    }\n\n    for (const param of template.parameters) {\n      if (param.required) {\n        const value = step.parameters?.[param.key]\n        if (value === undefined || value === null || value === '') {\n          errors[param.key] = `${param.label} is required`\n        }\n      }\n\n      if (param.type === 'number' || param.type === 'temperature' || param.type === 'duration') {\n        const value = step.parameters?.[param.key]\n        if (value !== undefined && value !== null && value !== '') {\n          const numValue = Number(value)\n          if (isNaN(numValue)) {\n            errors[param.key] = `${param.label} must be a number`\n          } else {\n            if (param.min !== undefined && numValue < param.min) {\n              errors[param.key] = `${param.label} must be at least ${param.min}`\n            }\n            if (param.max !== undefined && numValue > param.max) {\n              errors[param.key] = `${param.label} must be at most ${param.max}`\n            }\n          }\n        }\n      }\n    }\n\n    return {\n      valid: Object.keys(errors).length === 0,\n      errors,\n    }\n  }\n\n  function createStepFromTemplate(\n    template: StepTemplate,\n    overrides?: Partial<ProtocolStep>\n  ): ProtocolStep {\n    // Build default parameters from template\n    const parameters: Record<string, unknown> = {}\n    for (const param of template.parameters) {\n      if (param.default !== undefined) {\n        parameters[param.key] = param.default\n      }\n    }\n\n    return {\n      id: `step-${Date.now()}-${Math.random().toString(36).slice(2, 9)}`,\n      type: template.type,\n      name: template.name,\n      description: template.description,\n      duration: template.defaultDuration,\n      status: 'pending' as ProtocolStepStatus,\n      parameters,\n      order: 0,\n      ...overrides,\n    }\n  }\n\n  function formatParameterValue(value: unknown, param: ParameterDefinition): string {\n    if (value === undefined || value === null || value === '') {\n      return '-'\n    }\n\n    if (param.type === 'select' && param.options) {\n      const option = param.options.find((o) => o.value === value)\n      if (option) return option.label\n    }\n\n    if (param.type === 'concentration' && typeof value === 'object') {\n      const conc = value as { value: number; unit: string }\n      return `${conc.value} ${conc.unit}`\n    }\n\n    const strValue = String(value)\n    if (param.unit) {\n      return `${strValue} ${param.unit}`\n    }\n\n    return strValue\n  }\n\n  return {\n    builtInTemplates: BUILT_IN_TEMPLATES,\n    customTemplates,\n    allTemplates,\n    getTemplateByType,\n    getTemplateById,\n    saveCustomTemplate,\n    deleteCustomTemplate,\n    validateStep,\n    createStepFromTemplate,\n    formatParameterValue,\n  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package/dist/composables/useRackEditor.d.ts

@@ -0,0 +1,30 @@
+import { Ref, ComputedRef } from 'vue';
+import { Rack, WellPlateFormat, Well } from '../types';
+export interface UseRackEditorOptions {
+    defaultFormat?: WellPlateFormat;
+    defaultInjectionVolume?: number;
+    maxRacks?: number;
+    minRacks?: number;
+}
+export interface UseRackEditorReturn {
+    racks: Ref<Rack[]>;
+    activeRack: ComputedRef<Rack | undefined>;
+    activeRackId: Ref<string>;
+    addRack(name?: string): Rack;
+    removeRack(rackId: string): void;
+    reorderRacks(fromIndex: number, toIndex: number): void;
+    updateRack(rackId: string, data: Partial<Rack>): void;
+    setActiveRack(rackId: string): void;
+    setWellData(rackId: string, wellId: string, data: Partial<Well>): void;
+    clearWell(rackId: string, wellId: string): void;
+    clearAllWells(rackId: string): void;
+    fillSeries(rackId: string, prefix?: string): void;
+    getAllWells(): Array<{
+        rackId: string;
+        wellId: string;
+        well: Partial<Well>;
+    }>;
+    totalSampleCount: ComputedRef<number>;
+    reset(): void;
+}
+export declare function useRackEditor(initialRacks?: Rack[], options?: UseRackEditorOptions): UseRackEditorReturn;

package/dist/composables/useRackEditor.js

@@ -0,0 +1,168 @@
+import { ref, computed } from "vue";
+const SLOT_CYCLE = ["R", "G", "B", "Y"];
+const PLATE_CONFIGS = {
+  6: { rows: 2, cols: 3 },
+  12: { rows: 3, cols: 4 },
+  24: { rows: 4, cols: 6 },
+  48: { rows: 6, cols: 8 },
+  54: { rows: 6, cols: 9 },
+  96: { rows: 8, cols: 12 },
+  384: { rows: 16, cols: 24 }
+};
+let globalIdCounter = 0;
+function generateId() {
+  globalIdCounter++;
+  return `rack-${Date.now()}-${globalIdCounter}`;
+}
+function useRackEditor(initialRacks, options) {
+  var _a;
+  const defaultFormat = (options == null ? void 0 : options.defaultFormat) ?? 54;
+  const defaultInjVol = (options == null ? void 0 : options.defaultInjectionVolume) ?? 5;
+  const maxRacks = (options == null ? void 0 : options.maxRacks) ?? 10;
+  const minRacks = (options == null ? void 0 : options.minRacks) ?? 1;
+  function createDefaultRack(name, slotIndex) {
+    const slot = SLOT_CYCLE[(slotIndex ?? 0) % SLOT_CYCLE.length];
+    return {
+      id: generateId(),
+      name: name ?? `Rack ${racks.value.length + 1}`,
+      format: defaultFormat,
+      slot,
+      injectionVolume: defaultInjVol,
+      wells: {}
+    };
+  }
+  const racks = ref(
+    initialRacks && initialRacks.length > 0 ? initialRacks.map((r) => ({ ...r })) : [createDefaultRack("Rack 1", 0)]
+  );
+  const activeRackId = ref(((_a = racks.value[0]) == null ? void 0 : _a.id) ?? "");
+  const activeRack = computed(
+    () => racks.value.find((r) => r.id === activeRackId.value) ?? racks.value[0]
+  );
+  function addRack(name) {
+    if (racks.value.length >= maxRacks) {
+      return racks.value[racks.value.length - 1];
+    }
+    const rack = createDefaultRack(name, racks.value.length);
+    racks.value.push(rack);
+    activeRackId.value = rack.id;
+    return rack;
+  }
+  function removeRack(rackId) {
+    if (racks.value.length <= minRacks) return;
+    const index = racks.value.findIndex((r) => r.id === rackId);
+    if (index === -1) return;
+    racks.value.splice(index, 1);
+    if (activeRackId.value === rackId && racks.value[0]) {
+      activeRackId.value = racks.value[0].id;
+    }
+  }
+  function reorderRacks(fromIndex, toIndex) {
+    if (fromIndex < 0 || fromIndex >= racks.value.length) return;
+    if (toIndex < 0 || toIndex >= racks.value.length) return;
+    if (fromIndex === toIndex) return;
+    const [moved] = racks.value.splice(fromIndex, 1);
+    if (moved) {
+      racks.value.splice(toIndex, 0, moved);
+    }
+  }
+  function updateRack(rackId, data) {
+    const rack = racks.value.find((r) => r.id === rackId);
+    if (!rack) return;
+    if (data.name !== void 0) rack.name = data.name;
+    if (data.format !== void 0) rack.format = data.format;
+    if (data.slot !== void 0) rack.slot = data.slot;
+    if (data.injectionVolume !== void 0) rack.injectionVolume = data.injectionVolume;
+    if (data.wells !== void 0) rack.wells = data.wells;
+  }
+  function setActiveRack(rackId) {
+    if (racks.value.some((r) => r.id === rackId)) {
+      activeRackId.value = rackId;
+    }
+  }
+  function setWellData(rackId, wellId, data) {
+    const rack = racks.value.find((r) => r.id === rackId);
+    if (!rack) return;
+    rack.wells[wellId] = { ...rack.wells[wellId], ...data };
+  }
+  function clearWell(rackId, wellId) {
+    const rack = racks.value.find((r) => r.id === rackId);
+    if (!rack) return;
+    delete rack.wells[wellId];
+  }
+  function clearAllWells(rackId) {
+    const rack = racks.value.find((r) => r.id === rackId);
+    if (!rack) return;
+    rack.wells = {};
+  }
+  function fillSeries(rackId, prefix = "S") {
+    var _a2;
+    const rack = racks.value.find((r) => r.id === rackId);
+    if (!rack) return;
+    const config = PLATE_CONFIGS[rack.format];
+    if (!config) return;
+    let counter = 1;
+    for (let row = 0; row < config.rows; row++) {
+      for (let col = 0; col < config.cols; col++) {
+        const rowLabel = String.fromCharCode(65 + row);
+        const wellId = `${rowLabel}${col + 1}`;
+        if (!((_a2 = rack.wells[wellId]) == null ? void 0 : _a2.sampleType)) {
+          const paddedNum = String(counter).padStart(3, "0");
+          rack.wells[wellId] = {
+            id: wellId,
+            row,
+            col,
+            state: "filled",
+            sampleType: "sample",
+            metadata: {
+              label: `${prefix}${paddedNum}`,
+              injectionVolume: rack.injectionVolume,
+              injectionCount: 1
+            }
+          };
+        }
+        counter++;
+      }
+    }
+  }
+  function getAllWells() {
+    const result = [];
+    for (const rack of racks.value) {
+      for (const [wellId, well] of Object.entries(rack.wells)) {
+        result.push({ rackId: rack.id, wellId, well });
+      }
+    }
+    return result;
+  }
+  const totalSampleCount = computed(() => {
+    let count = 0;
+    for (const rack of racks.value) {
+      count += Object.keys(rack.wells).length;
+    }
+    return count;
+  });
+  function reset() {
+    racks.value = [createDefaultRack("Rack 1", 0)];
+    activeRackId.value = racks.value[0].id;
+  }
+  return {
+    racks,
+    activeRack,
+    activeRackId,
+    addRack,
+    removeRack,
+    reorderRacks,
+    updateRack,
+    setActiveRack,
+    setWellData,
+    clearWell,
+    clearAllWells,
+    fillSeries,
+    getAllWells,
+    totalSampleCount,
+    reset
+  };
+}
+export {
+  useRackEditor
+};
+//# sourceMappingURL=useRackEditor.js.map