@morscherlab/mint-sdk 1.5.0-beta.6 → 1.5.0-beta.8

package/dist/lab-BYhb_cJI.js.map

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+{"version":3,"file":"lab-BYhb_cJI.js","names":["$slots"],"sources":["../src/components/BaseTabs.vue","../src/components/BaseTabs.vue","../src/components/BasePill.vue","../src/components/BasePill.vue","../src/composables/controlSchemaDoseDesign.ts","../src/components/ProgressBar.vue","../src/components/ProgressBar.vue","../src/components/SmartGroupFieldRecipe.groups.ts","../src/components/SmartGroupFieldRecipe.vue","../src/components/SmartGroupFieldRecipe.vue","../src/components/SmartGroupManual.cohorts.ts","../src/components/SmartGroupManual.vue","../src/components/SmartGroupManual.vue","../src/components/internal/autoGroup/classKey.ts","../src/components/internal/autoGroup/vocab.json","../src/components/internal/autoGroup/classify.ts","../src/components/internal/autoGroup/tokenize.ts","../src/components/internal/autoGroup/columns.ts","../src/components/internal/autoGroup/cooccurrence.ts","../src/components/internal/autoGroup/colors.ts","../src/components/internal/autoGroup/compose.ts","../src/components/internal/autoGroup/fingerprint.ts","../src/components/internal/autoGroup/template.ts","../src/components/internal/autoGroup/tokenLength.ts","../src/components/internal/autoGroup/csv-shim.ts","../src/components/internal/useAutoGroup.ts","../src/components/internal/AutoGroupModalInternal.adapter.ts","../src/components/SampleSelector.colors.ts","../src/components/internal/AutoGroupModalInternal.vue","../src/components/internal/AutoGroupModalInternal.vue","../src/components/SampleSelectorSampleRow.vue","../src/components/SampleSelectorSampleRow.vue","../src/components/SampleSelector.tree.ts","../src/components/SampleSelectorGroupNode.vue","../src/components/SampleSelectorGroupNode.vue","../src/utils/sampleGroupPath.ts","../src/composables/useSampleGroups.ts","../src/components/SampleSelector.groups.ts","../src/components/SampleSelector.drag.ts","../src/components/SampleSelector.selection.ts","../src/components/SampleSelector.vue","../src/components/SampleSelector.vue","../src/components/SampleHierarchyTree.vue","../src/components/SampleHierarchyTree.vue","../src/composables/protocolTemplateCatalog.ts","../src/composables/useProtocolTemplates.ts","../src/components/ProtocolStep.presentation.ts","../src/components/ProtocolStepParameterField.vue","../src/components/ProtocolStepParameterField.vue","../src/components/ProtocolStepEditor.state.ts","../src/components/ProtocolStepEditor.vue","../src/components/ProtocolStepEditor.vue","../src/components/ScientificNumber.vue","../src/components/ScientificNumber.vue","../src/components/AdductText.vue","../src/components/AdductText.vue","../src/components/ChemicalFormula.vue","../src/components/ChemicalFormula.vue","../src/instrument.ts","../src/components/SequenceProgressBar.vue","../src/components/SequenceProgressBar.vue","../src/components/InstrumentStateBadge.vue","../src/components/InstrumentStateBadge.vue","../src/components/InstrumentStatusPanels.vue","../src/components/InstrumentStatusPanels.vue","../src/components/TimeRangeInput.vue","../src/components/TimeRangeInput.vue","../src/components/ResourceCard.vue","../src/components/ResourceCard.vue","../src/composables/useReagentSeries.ts","../src/lab.ts"],"sourcesContent":["<script setup lang=\"ts\">\n/** Renders an underline tab bar with mono count badges, icons, and disabled tab support. */\nimport { computed, type ComponentPublicInstance } from 'vue'\nimport type { OptionPrimitive, SelectOption, SelectOptionInput } from '../types'\nimport { normalizeOptionInput } from '../utils/options'\nimport { useRovingFocus } from '../composables/useRovingFocus'\n\ntype Tab = SelectOption<OptionPrimitive> & { id: string }\n\ninterface Props {\n  modelValue: OptionPrimitive\n  /** Tabs; `icon` takes SVG path data, `badge` a count shown after the label. */\n  options: SelectOptionInput[]\n}\n\nconst props = defineProps<Props>()\n\nconst emit = defineEmits<{\n  'update:modelValue': [value: OptionPrimitive]\n}>()\n\nconst activeTab = computed(() => String(props.modelValue))\nconst normalizedTabs = computed<Tab[]>(() =>\n  props.options.map((input) => {\n    const option = normalizeOptionInput<OptionPrimitive, SelectOption<OptionPrimitive>>(input)\n    return { ...option, id: String(option.value) }\n  }),\n)\n\nfunction isSvgIcon(icon: Tab['icon']): icon is string | string[] {\n  if (!icon) return false\n  return Array.isArray(icon) || icon.trim().startsWith('M') || icon.trim().startsWith('m')\n}\n\nfunction selectTab(tabId: string) {\n  const tab = normalizedTabs.value.find(t => t.id === tabId)\n  if (tab && !tab.disabled) {\n    emit('update:modelValue', tab.value)\n  }\n}\n\nconst tabButtonRefs = new Map<string, HTMLElement>()\n\nfunction setTabButtonRef(id: string, el: Element | ComponentPublicInstance | null) {\n  if (el instanceof HTMLElement) {\n    tabButtonRefs.set(id, el)\n  } else {\n    tabButtonRefs.delete(id)\n  }\n}\n\n// Left/Right only — BaseTabs renders a single horizontal strip with no vertical\n// variant, so there is no Up/Down axis to support.\nconst { handleKeydown } = useRovingFocus({\n  ids: () => normalizedTabs.value.filter(tab => !tab.disabled).map(tab => tab.id),\n  activeId: () => activeTab.value,\n  activate: selectTab,\n  getElement: (id) => tabButtonRefs.get(id),\n})\n</script>\n\n<template>\n  <div class=\"mint-tabs mint-tabs--underline\" role=\"tablist\">\n    <button\n      v-for=\"tab in normalizedTabs\"\n      :id=\"`mint-tab-${tab.id}`\"\n      :key=\"tab.id\"\n      :ref=\"(el) => setTabButtonRef(tab.id, el)\"\n      type=\"button\"\n      role=\"tab\"\n      :aria-selected=\"activeTab === tab.id\"\n      :aria-disabled=\"tab.disabled\"\n      :aria-controls=\"`mint-tabpanel-${tab.id}`\"\n      :tabindex=\"activeTab === tab.id ? 0 : -1\"\n      :class=\"[\n        'mint-tab',\n        activeTab === tab.id ? 'mint-tab--active' : '',\n        tab.disabled ? 'mint-tab--disabled' : '',\n      ]\"\n      @click=\"selectTab(tab.id)\"\n      @keydown=\"handleKeydown\"\n    >\n      <span class=\"mint-tab__content\">\n        <svg\n          v-if=\"isSvgIcon(tab.icon)\"\n          class=\"mint-tab__icon mint-tab__icon--svg\"\n          viewBox=\"0 0 24 24\"\n          fill=\"none\"\n          stroke=\"currentColor\"\n          stroke-width=\"2\"\n          stroke-linecap=\"round\"\n          stroke-linejoin=\"round\"\n          aria-hidden=\"true\"\n        >\n          <template v-if=\"Array.isArray(tab.icon)\">\n            <path v-for=\"(d, index) in tab.icon\" :key=\"index\" :d=\"d\" />\n          </template>\n          <path v-else :d=\"tab.icon\" />\n        </svg>\n        <span v-else-if=\"tab.icon\" class=\"mint-tab__icon\">{{ tab.icon }}</span>\n        {{ tab.label }}\n        <span v-if=\"tab.badge !== undefined\" class=\"mint-tab__badge\">\n          {{ tab.badge }}\n        </span>\n      </span>\n    </button>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Renders an underline tab bar with mono count badges, icons, and disabled tab support. */\nimport { computed, type ComponentPublicInstance } from 'vue'\nimport type { OptionPrimitive, SelectOption, SelectOptionInput } from '../types'\nimport { normalizeOptionInput } from '../utils/options'\nimport { useRovingFocus } from '../composables/useRovingFocus'\n\ntype Tab = SelectOption<OptionPrimitive> & { id: string }\n\ninterface Props {\n  modelValue: OptionPrimitive\n  /** Tabs; `icon` takes SVG path data, `badge` a count shown after the label. */\n  options: SelectOptionInput[]\n}\n\nconst props = defineProps<Props>()\n\nconst emit = defineEmits<{\n  'update:modelValue': [value: OptionPrimitive]\n}>()\n\nconst activeTab = computed(() => String(props.modelValue))\nconst normalizedTabs = computed<Tab[]>(() =>\n  props.options.map((input) => {\n    const option = normalizeOptionInput<OptionPrimitive, SelectOption<OptionPrimitive>>(input)\n    return { ...option, id: String(option.value) }\n  }),\n)\n\nfunction isSvgIcon(icon: Tab['icon']): icon is string | string[] {\n  if (!icon) return false\n  return Array.isArray(icon) || icon.trim().startsWith('M') || icon.trim().startsWith('m')\n}\n\nfunction selectTab(tabId: string) {\n  const tab = normalizedTabs.value.find(t => t.id === tabId)\n  if (tab && !tab.disabled) {\n    emit('update:modelValue', tab.value)\n  }\n}\n\nconst tabButtonRefs = new Map<string, HTMLElement>()\n\nfunction setTabButtonRef(id: string, el: Element | ComponentPublicInstance | null) {\n  if (el instanceof HTMLElement) {\n    tabButtonRefs.set(id, el)\n  } else {\n    tabButtonRefs.delete(id)\n  }\n}\n\n// Left/Right only — BaseTabs renders a single horizontal strip with no vertical\n// variant, so there is no Up/Down axis to support.\nconst { handleKeydown } = useRovingFocus({\n  ids: () => normalizedTabs.value.filter(tab => !tab.disabled).map(tab => tab.id),\n  activeId: () => activeTab.value,\n  activate: selectTab,\n  getElement: (id) => tabButtonRefs.get(id),\n})\n</script>\n\n<template>\n  <div class=\"mint-tabs mint-tabs--underline\" role=\"tablist\">\n    <button\n      v-for=\"tab in normalizedTabs\"\n      :id=\"`mint-tab-${tab.id}`\"\n      :key=\"tab.id\"\n      :ref=\"(el) => setTabButtonRef(tab.id, el)\"\n      type=\"button\"\n      role=\"tab\"\n      :aria-selected=\"activeTab === tab.id\"\n      :aria-disabled=\"tab.disabled\"\n      :aria-controls=\"`mint-tabpanel-${tab.id}`\"\n      :tabindex=\"activeTab === tab.id ? 0 : -1\"\n      :class=\"[\n        'mint-tab',\n        activeTab === tab.id ? 'mint-tab--active' : '',\n        tab.disabled ? 'mint-tab--disabled' : '',\n      ]\"\n      @click=\"selectTab(tab.id)\"\n      @keydown=\"handleKeydown\"\n    >\n      <span class=\"mint-tab__content\">\n        <svg\n          v-if=\"isSvgIcon(tab.icon)\"\n          class=\"mint-tab__icon mint-tab__icon--svg\"\n          viewBox=\"0 0 24 24\"\n          fill=\"none\"\n          stroke=\"currentColor\"\n          stroke-width=\"2\"\n          stroke-linecap=\"round\"\n          stroke-linejoin=\"round\"\n          aria-hidden=\"true\"\n        >\n          <template v-if=\"Array.isArray(tab.icon)\">\n            <path v-for=\"(d, index) in tab.icon\" :key=\"index\" :d=\"d\" />\n          </template>\n          <path v-else :d=\"tab.icon\" />\n        </svg>\n        <span v-else-if=\"tab.icon\" class=\"mint-tab__icon\">{{ tab.icon }}</span>\n        {{ tab.label }}\n        <span v-if=\"tab.badge !== undefined\" class=\"mint-tab__badge\">\n          {{ tab.badge }}\n        </span>\n      </span>\n    </button>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Compact label for tags, status indicators, and badges; supports a status dot, removable and icon slots. */\nimport { computed } from 'vue'\nimport type { PillVariant, PillSize, Tone } from '../types'\n\n/**\n * BasePill - Compact label component for tags, status indicators, and badges.\n *\n * @example\n * ```vue\n * <BasePill tone=\"success\">Active</BasePill>\n * <BasePill tone=\"warning\" removable @remove=\"handleRemove\">Tag</BasePill>\n * <BasePill tone=\"success\" dot pulse>Running</BasePill>\n * <BasePill :icon=\"true\">\n *   <template #icon><CheckIcon /></template>\n *   Verified\n * </BasePill>\n * ```\n */\ninterface Props {\n  /** Semantic color */\n  tone?: Tone\n  /** Tinted fill (`soft`) or a 1px border in the tone color (`outline`) */\n  variant?: PillVariant\n  /** Custom accent color (any CSS color); replaces the tone's accent for the dot, tint and border */\n  color?: string\n  /** Size of the pill */\n  size?: PillSize\n  /** Show remove button */\n  removable?: boolean\n  /** Disable interaction */\n  disabled?: boolean\n  /** Show icon slot */\n  icon?: boolean\n  /** Leading status dot in the pill's tone color */\n  dot?: boolean\n  /** Animate the status dot (live status) */\n  pulse?: boolean\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  tone: 'neutral',\n  variant: 'soft',\n  color: undefined,\n  size: 'md',\n  removable: false,\n  disabled: false,\n  icon: false,\n  dot: false,\n  pulse: false,\n})\n\nconst accentStyle = computed(() => (props.color ? { '--mint-pill-tone': props.color } : undefined))\n\n/**\n * @event remove - Emitted when the remove button is clicked\n */\nconst emit = defineEmits<{\n  remove: []\n}>()\n\nfunction handleRemove(event: MouseEvent) {\n  event.stopPropagation()\n  if (!props.disabled) {\n    emit('remove')\n  }\n}\n</script>\n\n<template>\n  <span\n    :class=\"[\n      'mint-pill',\n      `mint-pill--${tone}`,\n      `mint-pill--${variant}`,\n      `mint-pill--${size}`,\n      { 'mint-pill--disabled': disabled, 'mint-pill--with-icon': icon, 'mint-pill--accent': color },\n    ]\"\n    :style=\"accentStyle\"\n  >\n    <span v-if=\"dot\" :class=\"['mint-pill__dot', { 'mint-pill__dot--pulse': pulse }]\" aria-hidden=\"true\" />\n    <span v-if=\"icon\" class=\"mint-pill__icon\">\n      <slot name=\"icon\" />\n    </span>\n    <span class=\"mint-pill__label\">\n      <slot />\n    </span>\n    <button\n      v-if=\"removable && !disabled\"\n      type=\"button\"\n      class=\"mint-pill__remove\"\n      aria-label=\"Remove\"\n      @click=\"handleRemove\"\n    >\n      <svg class=\"mint-pill__remove-icon\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\" viewBox=\"0 0 24 24\">\n        <path d=\"M18 6 6 18\" /><path d=\"m6 6 12 12\" />\n      </svg>\n    </button>\n  </span>\n</template>\n","<script setup lang=\"ts\">\n/** Compact label for tags, status indicators, and badges; supports a status dot, removable and icon slots. */\nimport { computed } from 'vue'\nimport type { PillVariant, PillSize, Tone } from '../types'\n\n/**\n * BasePill - Compact label component for tags, status indicators, and badges.\n *\n * @example\n * ```vue\n * <BasePill tone=\"success\">Active</BasePill>\n * <BasePill tone=\"warning\" removable @remove=\"handleRemove\">Tag</BasePill>\n * <BasePill tone=\"success\" dot pulse>Running</BasePill>\n * <BasePill :icon=\"true\">\n *   <template #icon><CheckIcon /></template>\n *   Verified\n * </BasePill>\n * ```\n */\ninterface Props {\n  /** Semantic color */\n  tone?: Tone\n  /** Tinted fill (`soft`) or a 1px border in the tone color (`outline`) */\n  variant?: PillVariant\n  /** Custom accent color (any CSS color); replaces the tone's accent for the dot, tint and border */\n  color?: string\n  /** Size of the pill */\n  size?: PillSize\n  /** Show remove button */\n  removable?: boolean\n  /** Disable interaction */\n  disabled?: boolean\n  /** Show icon slot */\n  icon?: boolean\n  /** Leading status dot in the pill's tone color */\n  dot?: boolean\n  /** Animate the status dot (live status) */\n  pulse?: boolean\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  tone: 'neutral',\n  variant: 'soft',\n  color: undefined,\n  size: 'md',\n  removable: false,\n  disabled: false,\n  icon: false,\n  dot: false,\n  pulse: false,\n})\n\nconst accentStyle = computed(() => (props.color ? { '--mint-pill-tone': props.color } : undefined))\n\n/**\n * @event remove - Emitted when the remove button is clicked\n */\nconst emit = defineEmits<{\n  remove: []\n}>()\n\nfunction handleRemove(event: MouseEvent) {\n  event.stopPropagation()\n  if (!props.disabled) {\n    emit('remove')\n  }\n}\n</script>\n\n<template>\n  <span\n    :class=\"[\n      'mint-pill',\n      `mint-pill--${tone}`,\n      `mint-pill--${variant}`,\n      `mint-pill--${size}`,\n      { 'mint-pill--disabled': disabled, 'mint-pill--with-icon': icon, 'mint-pill--accent': color },\n    ]\"\n    :style=\"accentStyle\"\n  >\n    <span v-if=\"dot\" :class=\"['mint-pill__dot', { 'mint-pill__dot--pulse': pulse }]\" aria-hidden=\"true\" />\n    <span v-if=\"icon\" class=\"mint-pill__icon\">\n      <slot name=\"icon\" />\n    </span>\n    <span class=\"mint-pill__label\">\n      <slot />\n    </span>\n    <button\n      v-if=\"removable && !disabled\"\n      type=\"button\"\n      class=\"mint-pill__remove\"\n      aria-label=\"Remove\"\n      @click=\"handleRemove\"\n    >\n      <svg class=\"mint-pill__remove-icon\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\" viewBox=\"0 0 24 24\">\n        <path d=\"M18 6 6 18\" /><path d=\"m6 6 12 12\" />\n      </svg>\n    </button>\n  </span>\n</template>\n","import type {\n  ControlComponentBindingsConfig,\n  ControlComponentPropSource,\n  ControlComponentPropsByIdMap,\n  ControlComponentPropsMap,\n  ControlModelBinding,\n  ControlSchema,\n  DoseCalculatorControlPropsOptions,\n  DoseDesignControlModelOptions,\n  WellPlateControlPropsOptions,\n  WellPlateDoseControlPropsOptions,\n} from './controlSchemaTypes'\nimport type { WellConcentration } from '../utils/dose'\nimport {\n  defineControlModel,\n} from './controlSchemaModel'\nimport {\n  recordValue,\n} from './controlSchemaUtils'\n\n/** Return a default WellPlate prop mapping for generated control workspaces. */\nexport function defineWellPlateControlProps<TValues extends Record<string, unknown> = Record<string, unknown>>(\n  options: WellPlateControlPropsOptions<TValues> = {},\n): ControlComponentPropsMap<TValues> {\n  const selectedWells = options.selectedWells ?? sourceKey<TValues>('selectedWells')\n  const onUpdateModelValue = options.onUpdateModelValue === false\n    ? undefined\n    : options.onUpdateModelValue ?? updateControlValueSource(selectedWells)\n\n  const format = options.format ?? sourceKey<TValues>('plateFormat')\n  const showLegend = options.showLegend\n\n  return compactComponentPropsMap<TValues>({\n    modelValue: selectedWells,\n    'onUpdate:modelValue': onUpdateModelValue,\n    spec: (values: TValues) => ({\n      format: readSource(values, format),\n      showLegend: showLegend === undefined ? undefined : readSource(values, showLegend),\n    }),\n    wells: options.wells ?? sourceKey<TValues>('wells'),\n    disabled: options.disabled ?? sourceKey<TValues>('disabled'),\n    readonly: options.readonly ?? sourceKey<TValues>('readonly'),\n  })\n}\n\n/** Return a default DoseCalculator prop mapping for generated control workspaces. */\nexport function defineDoseCalculatorControlProps<TValues extends Record<string, unknown> = Record<string, unknown>>(\n  options: DoseCalculatorControlPropsOptions<TValues> = {},\n): ControlComponentPropsMap<TValues> {\n  const targetWells = options.targetWells ?? sourceKey<TValues>('selectedWells')\n  const wells = options.wells ?? sourceKey<TValues>('wells')\n  const onApplyToWells = options.onApplyToWells === false\n    ? undefined\n    : options.onApplyToWells ?? defaultDoseApplyHandler(wells, targetWells)\n\n  return compactComponentPropsMap<TValues>({\n    mode: options.mode ?? sourceKey<TValues>('doseMode'),\n    targetWells,\n    disabled: options.disabled ?? sourceKey<TValues>('disabled'),\n    molecularWeight: options.molecularWeight,\n    onApplyToWells,\n  })\n}\n\n/** Return named WellPlate + DoseCalculator prop mappings for one dose-design control model. */\nexport function defineWellPlateDoseControlProps<TValues extends Record<string, unknown> = Record<string, unknown>>(\n  options: WellPlateDoseControlPropsOptions<TValues> = {},\n): ControlComponentPropsByIdMap<TValues> {\n  return {\n    [options.plateId ?? 'plate']: defineWellPlateControlProps(options.plate),\n    [options.doseId ?? 'dose']: defineDoseCalculatorControlProps(options.dose),\n  }\n}\n\n/** Return named WellPlate + DoseCalculator component bindings for one dose-design control model. */\nexport function defineWellPlateDoseComponentBindings<TValues extends Record<string, unknown> = Record<string, unknown>>(\n  options: WellPlateDoseControlPropsOptions<TValues> = {},\n): ControlComponentBindingsConfig<TValues> {\n  return [\n    {\n      id: options.plateId ?? 'plate',\n      component: 'WellPlate',\n      props: defineWellPlateControlProps(options.plate),\n    },\n    {\n      id: options.doseId ?? 'dose',\n      component: 'DoseCalculator',\n      props: defineDoseCalculatorControlProps(options.dose),\n    },\n  ]\n}\n\n/**\n * Return a complete PluginWorkspaceView sidebar model for WellPlate + DoseCalculator dose design.\n *\n * @example Recommended\n * ```ts\n * const workspaceModel = defineDoseDesignControlModel({ selectedWells: ['A1', 'A2'] })\n * ```\n */\nexport function defineDoseDesignControlModel(\n  options: DoseDesignControlModelOptions = {},\n): ControlModelBinding {\n  const viewId = options.viewId ?? 'design'\n  const sectionId = options.sectionId ?? 'dose'\n  const doseControls: ControlSchema = {\n    selectedWells: {\n      type: 'tags',\n      label: 'Selected wells',\n      default: [...(options.selectedWells ?? ['A1', 'A2'])],\n    },\n    plateFormat: {\n      label: 'Plate format',\n      default: options.plateFormat ?? 96,\n      options: options.plateFormats ?? [96, 384],\n    },\n    doseMode: {\n      label: 'Dose mode',\n      default: options.doseMode ?? 'serial',\n      options: options.doseModes ?? ['serial', 'dilution', 'conversion'],\n    },\n    disabled: {\n      label: 'Disable tools',\n      default: options.disabled ?? false,\n    },\n  }\n\n  if (options.includeMolecularWeight) {\n    doseControls.molecularWeight = {\n      type: 'number',\n      label: 'Molecular weight',\n      default: options.molecularWeight ?? 300,\n      min: 0,\n    }\n  }\n\n  const componentProps: WellPlateDoseControlPropsOptions = {\n    ...options.componentProps,\n    dose: {\n      ...(options.componentProps?.dose ?? {}),\n      ...(options.includeMolecularWeight && options.componentProps?.dose?.molecularWeight === undefined\n        ? { molecularWeight: 'molecularWeight' }\n        : {}),\n    },\n  }\n\n  return defineControlModel({\n    componentBindings: defineWellPlateDoseComponentBindings(componentProps),\n    componentPropsById: defineWellPlateDoseControlProps(componentProps),\n    views: {\n      [viewId]: {\n        label: options.viewLabel ?? 'Design',\n        sections: {\n          [sectionId]: {\n            label: options.sectionLabel ?? 'Dose design',\n            description: options.sectionDescription ?? 'Well selection and dose calculator controls',\n            controls: doseControls,\n          },\n        },\n      },\n    },\n  })\n}\n\nfunction compactComponentPropsMap<TValues extends Record<string, unknown>>(\n  mapping: Record<string, ControlComponentPropSource<TValues> | undefined>,\n): ControlComponentPropsMap<TValues> {\n  return Object.fromEntries(\n    Object.entries(mapping).filter((entry): entry is [string, ControlComponentPropSource<TValues>] =>\n      entry[1] !== undefined\n    ),\n  )\n}\n\nfunction readSource<TValues extends Record<string, unknown>>(\n  values: TValues,\n  source: ControlComponentPropSource<TValues>,\n): unknown {\n  return typeof source === 'function' ? source(values) : values[source]\n}\n\nfunction sourceKey<TValues extends Record<string, unknown>>(key: string): keyof TValues & string {\n  return key as keyof TValues & string\n}\n\nfunction updateControlValueSource<TValues extends Record<string, unknown>>(\n  source: ControlComponentPropSource<TValues>,\n): ((values: TValues) => (value: string[]) => void) | undefined {\n  if (typeof source !== 'string') return undefined\n  return values => (value: string[]) => {\n    const writableValues = values as Record<string, unknown>\n    writableValues[source] = value\n  }\n}\n\nfunction defaultDoseApplyHandler<TValues extends Record<string, unknown>>(\n  wells: ControlComponentPropSource<TValues>,\n  targetWells: ControlComponentPropSource<TValues>,\n): ((values: TValues) => (results: WellConcentration[]) => void) | undefined {\n  if (wells === targetWells) return undefined\n  return updateWellsFromDoseResults(wells)\n}\n\nfunction updateWellsFromDoseResults<TValues extends Record<string, unknown>>(\n  source: ControlComponentPropSource<TValues>,\n): ((values: TValues) => (results: WellConcentration[]) => void) | undefined {\n  if (typeof source !== 'string') return undefined\n  return values => (results: WellConcentration[]) => {\n    const writableValues = values as Record<string, unknown>\n    const currentWells = recordValue(writableValues[source])\n    const nextWells: Record<string, Record<string, unknown>> = {}\n    for (const [wellId, well] of Object.entries(currentWells)) {\n      nextWells[wellId] = recordValue(well)\n    }\n\n    for (const result of results) {\n      const existing = recordValue(nextWells[result.wellId])\n      const metadata = recordValue(existing.metadata)\n      nextWells[result.wellId] = {\n        ...existing,\n        state: 'filled',\n        value: result.concentration.value,\n        metadata: {\n          ...metadata,\n          concentration: result.concentration,\n          ...(result.volume === undefined ? {} : { volume: result.volume }),\n        },\n      }\n    }\n\n    writableValues[source] = nextWells\n  }\n}\n","<script setup lang=\"ts\">\n/** Displays progress as a filled rail, with an indeterminate mode. */\nimport { computed } from 'vue'\nimport type { Tone } from '../types'\n\ninterface Props {\n  value?: number\n  tone?: Tone\n  size?: 'sm' | 'md' | 'lg'\n  label?: string\n  showValue?: boolean\n  indeterminate?: boolean\n  ariaLabel?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  value: 0,\n  tone: 'primary',\n  size: 'md',\n  label: undefined,\n  showValue: false,\n  indeterminate: false,\n})\n\nconst clampedValue = computed(() => Math.min(100, Math.max(0, props.value)))\n\nconst barStyle = computed(() => {\n  if (props.indeterminate) return undefined\n  return { width: `${clampedValue.value}%` }\n})\n</script>\n\n<template>\n  <div class=\"mint-progress\">\n    <div\n      v-if=\"label || showValue\"\n      class=\"mint-progress__header\"\n    >\n      <span v-if=\"label\" class=\"mint-progress__label\">{{ label }}</span>\n      <span v-if=\"showValue && !indeterminate\" class=\"mint-progress__value\">{{ clampedValue }}%</span>\n    </div>\n\n    <div\n      :class=\"[\n        'mint-progress__track',\n        `mint-progress__track--${size}`,\n      ]\"\n      role=\"progressbar\"\n      :aria-valuenow=\"indeterminate ? undefined : clampedValue\"\n      :aria-valuemin=\"indeterminate ? undefined : 0\"\n      :aria-valuemax=\"indeterminate ? undefined : 100\"\n      :aria-label=\"ariaLabel ?? label\"\n    >\n      <div\n        :class=\"[\n          'mint-progress__bar',\n          `mint-progress__bar--${tone}`,\n          indeterminate ? 'mint-progress__bar--indeterminate' : '',\n        ]\"\n        :style=\"barStyle\"\n      />\n    </div>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Displays progress as a filled rail, with an indeterminate mode. */\nimport { computed } from 'vue'\nimport type { Tone } from '../types'\n\ninterface Props {\n  value?: number\n  tone?: Tone\n  size?: 'sm' | 'md' | 'lg'\n  label?: string\n  showValue?: boolean\n  indeterminate?: boolean\n  ariaLabel?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  value: 0,\n  tone: 'primary',\n  size: 'md',\n  label: undefined,\n  showValue: false,\n  indeterminate: false,\n})\n\nconst clampedValue = computed(() => Math.min(100, Math.max(0, props.value)))\n\nconst barStyle = computed(() => {\n  if (props.indeterminate) return undefined\n  return { width: `${clampedValue.value}%` }\n})\n</script>\n\n<template>\n  <div class=\"mint-progress\">\n    <div\n      v-if=\"label || showValue\"\n      class=\"mint-progress__header\"\n    >\n      <span v-if=\"label\" class=\"mint-progress__label\">{{ label }}</span>\n      <span v-if=\"showValue && !indeterminate\" class=\"mint-progress__value\">{{ clampedValue }}%</span>\n    </div>\n\n    <div\n      :class=\"[\n        'mint-progress__track',\n        `mint-progress__track--${size}`,\n      ]\"\n      role=\"progressbar\"\n      :aria-valuenow=\"indeterminate ? undefined : clampedValue\"\n      :aria-valuemin=\"indeterminate ? undefined : 0\"\n      :aria-valuemax=\"indeterminate ? undefined : 100\"\n      :aria-label=\"ariaLabel ?? label\"\n    >\n      <div\n        :class=\"[\n          'mint-progress__bar',\n          `mint-progress__bar--${tone}`,\n          indeterminate ? 'mint-progress__bar--indeterminate' : '',\n        ]\"\n        :style=\"barStyle\"\n      />\n    </div>\n  </div>\n</template>\n","/**\n * Pure grouping logic for SmartGroupFieldRecipe (the \"auto\" / Field Recipe mode).\n *\n * Mirrors the design prototype's live grouping engine: groups are formed by\n * joining the values of whichever fields are switched on, in field order.\n * Kept framework-free so it is unit-testable in isolation from the component.\n */\n\n/** A field/factor the user can group by. */\nexport interface SmartGroupField {\n  /** Column key as it appears in each sample record. */\n  key: string\n  /** Display role, e.g. `Factor` or `Replicate`. */\n  role: string\n  /** Comma-separated preview of the field's distinct values. */\n  vals: string\n  /** Whether this field is a replicate dimension (grouping by it shatters groups). */\n  rep: boolean\n}\n\n/** A single sample as a flat key → value record. */\nexport type SmartGroupSampleRecord = Record<string, string>\n\n/** A resolved group in the live preview rail. */\nexport interface FieldRecipeGroup {\n  name: string\n  count: number\n  color: string\n}\n\n/** Name of the QC pool group appended by `appendQcGroup`. */\nexport const QC_POOL_NAME = 'QC_Pool'\n\n/** How QC samples are routed relative to the biological groups. */\nexport type QcRoute = 'Overlay only' | 'Exclude' | 'Mix into groups'\n\n/**\n * Kind of inline summary callout to render. `warn`: a replicate field is on.\n * `singletons`: no replicate field is on, but half or more of the groups have one sample.\n */\nexport type FieldRecipeSummaryKind = 'mute' | 'warn' | 'singletons' | 'info'\n\nexport interface FieldRecipeSummary {\n  kind: FieldRecipeSummaryKind\n  /** Number of base (non-QC) groups the current toggles produce. */\n  groupCount: number\n}\n\n/**\n * Build the ordered group list from whichever fields are switched on.\n * Returns an empty list when no field is active. `layerOrder` (field indices\n * in layer order) overrides the default field-order joining of the group name.\n */\nexport function computeFieldGroups(\n  samples: SmartGroupSampleRecord[],\n  fields: SmartGroupField[],\n  on: boolean[],\n  palette: string[],\n  layerOrder?: readonly number[],\n): FieldRecipeGroup[] {\n  const keys = layerOrder\n    ? layerOrder.filter(i => on[i]).map(i => fields[i].key)\n    : fields.filter((_, i) => on[i]).map(field => field.key)\n  if (keys.length === 0) return []\n\n  const order: string[] = []\n  const counts = new Map<string, number>()\n  for (const sample of samples) {\n    const name = keys.map(key => sample[key]).join('_')\n    if (!counts.has(name)) {\n      counts.set(name, 0)\n      order.push(name)\n    }\n    counts.set(name, (counts.get(name) ?? 0) + 1)\n  }\n\n  return order.map((name, index) => ({\n    name,\n    count: counts.get(name) ?? 0,\n    color: palette[index % palette.length],\n  }))\n}\n\n/**\n * Append the QC pool group when QC is mixed into the biological groups.\n * `Overlay only` and `Exclude` leave the group list untouched.\n */\nexport function appendQcGroup(\n  groups: FieldRecipeGroup[],\n  route: QcRoute,\n  qcColor: string,\n  qcCount = 3,\n): FieldRecipeGroup[] {\n  if (route === 'Mix into groups') {\n    return [...groups, { name: QC_POOL_NAME, count: qcCount, color: qcColor }]\n  }\n  return groups\n}\n\n/** Total samples the grouping applies to: QC is dropped only when excluded. */\nexport function sampleTotalFor(route: QcRoute, realCount = 9, qcCount = 3): number {\n  return route === 'Exclude' ? realCount : realCount + qcCount\n}\n\n/**\n * True when half or more of the groups have one sample: the design has no\n * replicate in the names, or a field that is on is not part of the condition.\n */\nexport function mostlySingletons(groups: FieldRecipeGroup[]): boolean {\n  return groups.length > 1 && groups.filter(group => group.count === 1).length * 2 >= groups.length\n}\n\n/** Decide which inline summary callout the Field Recipe should show. */\nexport function fieldRecipeSummary(input: {\n  activeFactors: string[]\n  repOn: boolean\n  baseGroups: FieldRecipeGroup[]\n}): FieldRecipeSummary {\n  const groupCount = input.baseGroups.length\n  if (input.activeFactors.length === 0) return { kind: 'mute', groupCount }\n  if (input.repOn) return { kind: 'warn', groupCount }\n  if (mostlySingletons(input.baseGroups)) return { kind: 'singletons', groupCount }\n  return { kind: 'info', groupCount }\n}\n","<script lang=\"ts\">\n/**\n * SmartGroupFieldRecipe — the \"auto\" mode of the Smart Group modal.\n *\n * MINT parses the structure of sample names into candidate fields; the user\n * switches on the factors that define their groups. A live preview rail\n * reflects the resulting groups, an inline summary explains what will happen\n * (including the replicate \"singleton trap\"), and a QC routing control decides\n * how quality-control samples are handled. Grouping maths live in the tested\n * `./SmartGroupFieldRecipe.groups` module.\n *\n * The reference-fixture defaults live in this module-scope `<script>` block\n * because `defineProps` default factories are hoisted and cannot reference\n * bindings declared inside `<script setup>`.\n */\nimport type { SmartGroupField, SmartGroupSampleRecord } from './SmartGroupFieldRecipe.groups'\nimport { SAMPLE_GROUP_TOKENS } from '../utils/color'\n\nconst FR_BASE = [\n  { Condition: 'Control', Dose: 'Vehicle' },\n  { Condition: 'Treatment', Dose: 'Low' },\n  { Condition: 'Treatment', Dose: 'High' },\n]\nconst DEFAULT_SAMPLES: SmartGroupSampleRecord[] = FR_BASE.flatMap(base =>\n  [1, 2, 3].map(rep => ({ ...base, Replicate: `Rep${rep}` })),\n)\nconst DEFAULT_FIELDS: SmartGroupField[] = [\n  { key: 'Condition', role: 'Factor', vals: 'Control, Treatment', rep: false },\n  { key: 'Dose', role: 'Factor', vals: 'Vehicle, Low, High', rep: false },\n  { key: 'Replicate', role: 'Replicate', vals: 'Rep1, Rep2, Rep3', rep: true },\n]\nconst DEFAULT_PALETTE = [...SAMPLE_GROUP_TOKENS]\n</script>\n\n<script setup lang=\"ts\">\nimport { computed, h, nextTick, ref, type FunctionalComponent } from 'vue'\nimport {\n  appendQcGroup,\n  computeFieldGroups,\n  fieldRecipeSummary,\n  QC_POOL_NAME,\n  sampleTotalFor,\n  type QcRoute,\n} from './SmartGroupFieldRecipe.groups'\nimport { sampleTypeMarker } from '../utils/sampleTypeMarker'\nimport { useListReorder } from '../composables/useListReorder'\nimport ActionMenu from './ActionMenu.vue'\nimport BaseButton from './BaseButton.vue'\nimport BaseCheckbox from './BaseCheckbox.vue'\nimport LoadingSpinner from './LoadingSpinner.vue'\nimport SegmentedControl from './SegmentedControl.vue'\nimport type { ActionMenuItem } from '../types/components'\nimport type { FieldRecipeApplyPayload, FieldRecipeQcChip, SmartGroupFieldRecipeProps } from './SmartGroup.types'\n\nconst props = withDefaults(defineProps<SmartGroupFieldRecipeProps>(), {\n  samples: () => DEFAULT_SAMPLES,\n  fields: () => DEFAULT_FIELDS,\n  experimentLabel: 'EXP-014',\n  headerCount: 12,\n  initialRoute: 'Overlay only',\n  palette: () => DEFAULT_PALETTE,\n  qcColor: 'var(--mint-sample-9)',\n  canDownloadTemplate: true,\n  loading: false,\n  renamable: false,\n})\n\nconst emit = defineEmits<{\n  apply: [payload: FieldRecipeApplyPayload]\n  cancel: []\n  manual: []\n  close: []\n  /** Controlled mode: a field toggle was clicked (card index). */\n  toggle: [index: number]\n  /** A field moved one layer (card index). A drag over several layers emits one event for each step. */\n  move: [index: number, direction: 'up' | 'down']\n  /** The user gave a field a new name (card index). */\n  rename: [index: number, name: string]\n  /** Controlled mode: the QC routing select changed. */\n  'update:route': [route: QcRoute]\n  /** A CSV/TSV file was chosen (upload button) or dropped; parent parses it. */\n  'csv-file': [file: File]\n  /** Download a blank metadata template (parent calls the engine). */\n  'download-template': []\n  /** Download a pre-filled metadata template (parent calls the engine). */\n  'download-prefilled': []\n}>()\n\n/** Tiny stroke-icon helper sharing the design's path data. */\nconst Icon: FunctionalComponent<{ d: string; size?: number }> = iconProps =>\n  h(\n    'svg',\n    {\n      width: iconProps.size ?? 16,\n      height: iconProps.size ?? 16,\n      viewBox: '0 0 24 24',\n      fill: 'none',\n      stroke: 'currentColor',\n      'stroke-width': 2,\n      'stroke-linecap': 'round',\n      'stroke-linejoin': 'round',\n    },\n    [h('path', { d: iconProps.d })],\n  )\nconst ICON = {\n  bolt: 'M13 10V3L4 14h7v7l9-11h-7z',\n  info: 'M12 16v-4M12 8h.01M21 12a9 9 0 11-18 0 9 9 0 0118 0z',\n  warn: 'M12 9v4M12 17h.01M10.29 3.86L1.82 18a2 2 0 001.71 3h16.94a2 2 0 001.71-3L13.71 3.86a2 2 0 00-3.42 0z',\n  check: 'M20 6L9 17l-5-5',\n  close: 'M6 18L18 6M6 6l12 12',\n  upload: 'M21 15v4a2 2 0 01-2 2H5a2 2 0 01-2-2v-4M17 8l-5-5-5 5M12 3v12',\n  chev: 'M6 9l6 6 6-6',\n  grip: 'M9 6h.01M9 12h.01M9 18h.01M15 6h.01M15 12h.01M15 18h.01',\n  pencil: 'M12 20h9M16.5 3.5a2.12 2.12 0 013 3L7 19l-4 1 1-4L16.5 3.5z',\n}\n\nconst MAX_BAR = 44\n/** QC reads the same everywhere: neutral solid ring, never a group color (3a). */\nconst QC_DOT_STYLE = sampleTypeMarker('qc', '').style\n\n// CSV upload (presentational): the component only surfaces the control and\n// emits the chosen/dropped File; AutoGroupModalInternal parses it into the engine.\nconst fileInput = ref<HTMLInputElement | null>(null)\nconst dragOver = ref(false)\nlet dragDepth = 0\n\nfunction isCsvLike(file: File): boolean {\n  return /\\.(csv|tsv)$/i.test(file.name)\n    || file.type === 'text/csv'\n    || file.type === 'text/tab-separated-values'\n}\nfunction pickCsv() {\n  fileInput.value?.click()\n}\nfunction onFileChange(event: Event) {\n  const input = event.target as HTMLInputElement\n  const file = input.files?.[0]\n  if (file) emit('csv-file', file)\n  input.value = '' // allow re-selecting the same file\n}\nfunction onDragEnter(event: DragEvent) {\n  // A field row dragged to a new layer is not a file drop.\n  if (!event.dataTransfer?.types.includes('Files')) return\n  dragDepth += 1\n  dragOver.value = true\n}\nfunction onDragLeave() {\n  dragDepth = Math.max(0, dragDepth - 1)\n  if (dragDepth === 0) dragOver.value = false\n}\nfunction onDrop(event: DragEvent) {\n  dragDepth = 0\n  dragOver.value = false\n  const file = event.dataTransfer?.files?.[0]\n  if (file && isCsvLike(file)) emit('csv-file', file)\n}\n\nconst csvMenuItems = computed<ActionMenuItem[]>(() => [\n  { id: 'upload', label: 'Upload CSV' },\n  { id: 'template', label: 'Download template', disabled: !props.canDownloadTemplate },\n  { id: 'prefilled', label: 'Download pre-filled', disabled: !props.canDownloadTemplate },\n])\nfunction onCsvMenuSelect(item: ActionMenuItem) {\n  if (item.id === 'upload') pickCsv()\n  else if (item.id === 'template') emit('download-template')\n  else emit('download-prefilled')\n}\n\nconst QC_ROUTE_OPTIONS: { value: QcRoute; label: string }[] = [\n  { value: 'Overlay only', label: 'Overlay' },\n  { value: 'Exclude', label: 'Exclude' },\n  { value: 'Mix into groups', label: 'Mix in' },\n]\n\n// Uncontrolled fallback state (used by the standalone story). In controlled\n// mode AutoGroupModalInternal supplies `enabled` / `layers` / `groups` / `route` +\n// `qcChip` and the `toggle` / `move` / `update:route` events drive the engine\n// instead of this local state. `orderInner` tracks the uncontrolled layer\n// order: field indices in toggle order, first entry = hierarchy layer 1.\n// `layers` without `enabled`: the parent owns the order, the toggles are local.\nconst startLayers = props.enabled === undefined ? props.layers : undefined\nconst onInner = ref<boolean[]>(\n  props.initialOn\n    ? [...props.initialOn]\n    : startLayers?.map(layer => layer !== null) ?? props.fields.map(field => !field.rep),\n)\nconst orderInner = ref<number[]>(onInner.value.flatMap((isOn, i) => (isOn ? [i] : [])))\nconst routeInner = ref<QcRoute>(props.initialRoute)\n\nconst controlledEnabled = computed(() => props.enabled !== undefined)\nconst controlledRoute = computed(() => props.route !== undefined)\n\nconst on = computed(() => props.enabled ?? onInner.value)\nconst currentRoute = computed(() => props.route ?? routeInner.value)\n\n// Per-card hierarchy layer (1-based, null = not grouped by). Controlled mode\n// passes `layers` from the engine; controlled-without-layers keeps the legacy\n// field-order numbering; uncontrolled mode derives from the local toggle order.\nconst layers = computed<(number | null)[]>(() => {\n  if (props.layers !== undefined && controlledEnabled.value) return props.layers\n  if (props.layers !== undefined) {\n    // Local toggles over the parent's order: a field that is switched off\n    // leaves its layer, and one that is switched on goes last.\n    let last = Math.max(0, ...props.layers.map(layer => layer ?? 0))\n    return props.layers.map((layer, i) => (on.value[i] ? layer ?? ++last : null))\n  }\n  if (controlledEnabled.value) {\n    let layer = 0\n    return props.fields.map((_, i) => (on.value[i] ? ++layer : null))\n  }\n  return props.fields.map((_, i) => {\n    const pos = orderInner.value.indexOf(i)\n    return pos === -1 ? null : pos + 1\n  })\n})\n// Field indices sorted by layer — the join order for names and the summary.\nconst layerOrder = computed<number[]>(() =>\n  layers.value\n    .flatMap((layer, i) => (layer === null ? [] : [{ layer, i }]))\n    .sort((a, b) => a.layer - b.layer)\n    .map(entry => entry.i),\n)\n\n// The two lists of the layout: grouped fields in layer order, then the rest.\n// `index` is the card index that the `toggle` / `move` / `rename` events carry.\ninterface FieldCard { index: number; field: SmartGroupField }\nconst onCards = computed<FieldCard[]>(() => layerOrder.value.map(index => ({ index, field: props.fields[index] })))\nconst offCards = computed<FieldCard[]>(() =>\n  props.fields.flatMap((field, index) => (layers.value[index] === null ? [{ index, field }] : [])),\n)\n\nconst computedBase = computed(() =>\n  computeFieldGroups(props.samples, props.fields, on.value, props.palette, layerOrder.value),\n)\nconst baseGroups = computed(() => props.groups ?? computedBase.value)\nconst groups = computed(() => props.groups ?? appendQcGroup(computedBase.value, currentRoute.value, props.qcColor))\nconst activeFactors = computed(() => layerOrder.value.map(i => props.fields[i].key))\nconst counts = computed(() => baseGroups.value.map(group => group.count))\nconst uniform = computed(() => counts.value.length > 0 && counts.value.every(count => count === counts.value[0]))\nconst repOnField = computed(() => props.fields.find((field, i) => field.rep && on.value[i]))\nconst repOn = computed(() => repOnField.value !== undefined)\n\nconst summary = computed(() =>\n  fieldRecipeSummary({ activeFactors: activeFactors.value, repOn: repOn.value, baseGroups: baseGroups.value }),\n)\nconst groupedSampleTotal = computed(() => groups.value.reduce((sum, group) => sum + group.count, 0))\nconst maxCount = computed(() => Math.max(...groups.value.map(group => group.count), 1))\nconst qcCount = computed(() => props.qcCount ?? Math.max(0, props.headerCount - props.samples.length))\nconst realCount = computed(() => Math.max(0, props.headerCount - qcCount.value))\nconst sampleTotal = computed(() => sampleTotalFor(currentRoute.value, realCount.value, qcCount.value))\nconst qcChips = computed<FieldRecipeQcChip[]>(() => {\n  if (props.qcChips !== undefined) return props.qcChips\n  if (props.qcChip !== undefined) return props.qcChip ? [props.qcChip] : []\n  return currentRoute.value !== 'Mix into groups' ? [{ name: 'QC_Pool', count: qcCount.value }] : []\n})\nconst footHint = computed(() =>\n  currentRoute.value === 'Exclude'\n    ? ` · ${qcCount.value} QC excluded`\n    : currentRoute.value === 'Mix into groups'\n      ? ' · QC mixed in'\n      : ` · ${qcCount.value} QC overlaid`,\n)\n\n// A toggle moves the row to the other list, a keyboard move reorders the rows\n// and a rename replaces the row. Each time the focused control is re-created,\n// so focus goes back to the same control of the same field.\nconst root = ref<HTMLElement | null>(null)\nconst controlOf = (index: number, selector: string): HTMLElement | null =>\n  root.value?.querySelector<HTMLElement>(`[data-field=\"${index}\"] ${selector}`) ?? null\nasync function refocus(index: number, selector: string) {\n  await nextTick()\n  controlOf(index, selector)?.focus()\n}\n\nfunction toggle(index: number) {\n  void refocus(index, '[role=\"switch\"]')\n  if (controlledEnabled.value) {\n    emit('toggle', index)\n    return\n  }\n  const wasOn = onInner.value[index]\n  onInner.value = onInner.value.map((value, i) => (i === index ? !value : value))\n  // A re-enabled field appends as the LAST layer, mirroring the engine.\n  orderInner.value = wasOn\n    ? orderInner.value.filter(i => i !== index)\n    : [...orderInner.value, index]\n}\n\nfunction moveLayer(index: number, direction: 'up' | 'down') {\n  if (controlledEnabled.value || props.layers !== undefined) {\n    emit('move', index, direction)\n    return\n  }\n  const from = orderInner.value.indexOf(index)\n  if (from === -1) return\n  const to = direction === 'up' ? from - 1 : from + 1\n  if (to < 0 || to >= orderInner.value.length) return\n  const next = [...orderInner.value]\n  ;[next[from], next[to]] = [next[to], next[from]]\n  orderInner.value = next\n}\n\n// Drag a grouped field to another layer, or press Alt + arrow on its handle.\nconst reorder = useListReorder<FieldCard>({\n  items: () => onCards.value,\n  getId: card => card.field.key,\n  getLabel: card => card.field.key,\n  itemNoun: 'layer',\n  getElement: id => {\n    const card = onCards.value.find(candidate => candidate.field.key === id)\n    return card ? controlOf(card.index, '.fr-row__grip') : null\n  },\n  onReorder: ({ fromIndex, toIndex }) => {\n    const { index } = onCards.value[fromIndex]\n    const direction = toIndex < fromIndex ? 'up' : 'down'\n    for (let step = 0; step < Math.abs(toIndex - fromIndex); step++) moveLayer(index, direction)\n  },\n})\n\n// Inline rename of one field at a time. The name is the identity of a field,\n// so a name that another field has is refused and the input stays open.\nconst renaming = ref<number | null>(null)\nconst draftName = ref('')\nconst renameTaken = ref(false)\nconst renameInput = ref<HTMLInputElement[]>([])\nasync function startRename(card: FieldCard) {\n  renaming.value = card.index\n  renameTaken.value = false\n  draftName.value = card.field.key\n  await nextTick()\n  renameInput.value[0]?.select()\n}\nfunction endRename(card: FieldCard, restoreFocus: boolean) {\n  renaming.value = null\n  renameTaken.value = false\n  if (restoreFocus) void refocus(card.index, '.fr-row__rename')\n}\nfunction commitRename(card: FieldCard, fromBlur = false) {\n  if (renaming.value !== card.index) return\n  const name = draftName.value.trim()\n  const taken = name !== card.field.key\n    && (props.fields.some(field => field.key === name) || (props.reservedNames?.includes(name) ?? false))\n  if (taken && !fromBlur) {\n    renameTaken.value = true\n    return\n  }\n  // Leaving the input drops a name that is in use; focus stays where the user put it.\n  endRename(card, !fromBlur)\n  if (name && name !== card.field.key && !taken) emit('rename', card.index, name)\n}\n\nfunction onRouteChange(value: QcRoute) {\n  if (controlledRoute.value) {\n    emit('update:route', value)\n    return\n  }\n  routeInner.value = value\n}\n\nfunction onApply() {\n  if (activeFactors.value.length === 0) return\n  emit('apply', {\n    groups: groups.value,\n    route: currentRoute.value,\n    sampleTotal: sampleTotal.value,\n    activeFactors: activeFactors.value,\n  })\n}\n</script>\n\n<template>\n  <div ref=\"root\" class=\"sg-modal fr\">\n    <!-- header -->\n    <div class=\"sg-head\">\n      <Icon :d=\"ICON.bolt\" :size=\"18\" />\n      <span class=\"sg-head__title\">Group samples</span>\n      <span class=\"sg-head__sub\">· {{ headerCount }} samples<template v-if=\"experimentLabel\"> from {{ experimentLabel }}</template></span>\n      <div class=\"sg-head__spacer\" />\n      <ActionMenu label=\"CSV\" :items=\"csvMenuItems\" @select=\"onCsvMenuSelect\">\n        <template #trigger=\"{ open, toggle: toggleMenu, keydown }\">\n          <button\n            type=\"button\"\n            class=\"fr-upload\"\n            aria-haspopup=\"menu\"\n            :aria-expanded=\"open\"\n            @click=\"toggleMenu\"\n            @keydown=\"keydown\"\n          >\n            <Icon :d=\"ICON.upload\" :size=\"14\" /> CSV <Icon :d=\"ICON.chev\" :size=\"13\" />\n          </button>\n        </template>\n      </ActionMenu>\n      <input\n        ref=\"fileInput\"\n        type=\"file\"\n        accept=\".csv,.tsv,text/csv,text/tab-separated-values\"\n        hidden\n        @change=\"onFileChange\"\n      />\n      <div class=\"sg-mode\" role=\"tablist\" aria-label=\"Grouping mode\">\n        <button type=\"button\" class=\"sg-mode__btn sg-mode__btn--on\" role=\"tab\" :aria-selected=\"true\">Auto</button>\n        <button type=\"button\" class=\"sg-mode__btn\" role=\"tab\" :aria-selected=\"false\" @click=\"emit('manual')\">Manual</button>\n      </div>\n      <button class=\"sg-head__close\" aria-label=\"Close\" @click=\"emit('close')\">\n        <Icon :d=\"ICON.close\" :size=\"16\" />\n      </button>\n    </div>\n\n    <div class=\"sg-body\">\n      <!-- main -->\n      <div\n        class=\"sg-body__main\"\n        @dragenter.prevent=\"onDragEnter\"\n        @dragover.prevent\n        @dragleave.prevent=\"onDragLeave\"\n        @drop.prevent=\"onDrop\"\n      >\n        <div v-if=\"dragOver\" class=\"fr-dropzone\">\n          <Icon :d=\"ICON.upload\" :size=\"22\" />\n          <span>Drop CSV to load samples</span>\n        </div>\n        <div v-if=\"loading\" class=\"fr-loading\">\n          <LoadingSpinner size=\"md\" label=\"Loading experiment metadata\" />\n          <span>Loading experiment metadata…</span>\n        </div>\n        <div v-if=\"fields.length === 0 && headerCount === 0 && !loading\" class=\"fr-blank\" data-test=\"recipe-empty\">\n          <span class=\"sg-lead__q\">No samples to group</span>\n          <span class=\"sg-lead__hint\">\n            Upload a CSV with one sample column and one column for each field, or close this dialog and select\n            samples first.\n          </span>\n          <BaseButton variant=\"secondary\" size=\"sm\" @click=\"pickCsv\">\n            <template #icon-left><Icon :d=\"ICON.upload\" :size=\"15\" /></template>\n            Upload CSV\n          </BaseButton>\n        </div>\n        <template v-else>\n          <div v-if=\"anatomy && anatomy.length > 0\" class=\"fr-anatomy\">\n            <span class=\"fr-label\">How MINT read your names</span>\n            <div class=\"fr-anatomy__tokens\">\n              <span v-for=\"(token, t) in anatomy\" :key=\"t\" class=\"fr-token\" :class=\"'fr-token--' + token.state\">\n                <span class=\"fr-token__text\">{{ token.text }}</span>\n                <span class=\"fr-token__caption\">{{ token.caption }}</span>\n              </span>\n            </div>\n          </div>\n\n          <span class=\"fr-label\">Group by</span>\n          <div class=\"sg-recipe\">\n            <div v-if=\"onCards.length === 0\" class=\"fr-empty\">\n              {{ fields.length === 0 ? 'These sample names have no field to group by.' : 'No field is on. Switch on a field below.' }}\n            </div>\n            <div\n              v-for=\"(card, position) in onCards\"\n              :key=\"card.field.key\"\n              class=\"sg-field sg-field--on fr-row\"\n              :class=\"{\n                'fr-field--warn': card.field.rep,\n                'fr-row--dragging': reorder.isDragging(card.field.key),\n                'fr-row--over': reorder.isDragOver(card.field.key),\n              }\"\n              data-test=\"field-on\"\n              :data-field=\"card.index\"\n              :draggable=\"renaming !== card.index\"\n              @dragstart=\"reorder.onDragStart($event, card, position)\"\n              @dragover=\"reorder.onDragOver($event, card, position)\"\n              @dragleave=\"reorder.onDragLeave\"\n              @drop=\"reorder.onDrop($event, card, position)\"\n              @dragend=\"reorder.onDragEnd\"\n            >\n              <button\n                type=\"button\"\n                class=\"fr-row__grip\"\n                :aria-label=\"`Move ${card.field.key}, layer ${position + 1} of ${onCards.length}. Press Alt and an arrow key.`\"\n                @keydown=\"reorder.onKeydown($event, card, position)\"\n              >\n                <Icon :d=\"ICON.grip\" :size=\"14\" />\n              </button>\n              <span class=\"fr-row__layer\">{{ position + 1 }}</span>\n              <input\n                v-if=\"renaming === card.index\"\n                ref=\"renameInput\"\n                v-model=\"draftName\"\n                class=\"fr-row__name-input\"\n                :aria-label=\"'New name for ' + card.field.key\"\n                :aria-invalid=\"renameTaken || undefined\"\n                @input=\"renameTaken = false\"\n                @keydown.enter.prevent=\"commitRename(card)\"\n                @keydown.esc.stop=\"endRename(card, true)\"\n                @blur=\"commitRename(card, true)\"\n              />\n              <span v-if=\"renaming === card.index && renameTaken\" class=\"fr-row__error\" role=\"alert\">\n                Another field has this name\n              </span>\n              <template v-else>\n                <span class=\"sg-field__name\">{{ card.field.key }}</span>\n                <button\n                  v-if=\"renamable\"\n                  type=\"button\"\n                  class=\"fr-row__rename\"\n                  :aria-label=\"'Rename ' + card.field.key\"\n                  @click=\"startRename(card)\"\n                >\n                  <Icon :d=\"ICON.pencil\" :size=\"12\" />\n                </button>\n              </template>\n              <span class=\"sg-field__vals\">{{ card.field.vals }}</span>\n              <span v-if=\"hints?.[card.index]\" class=\"fr-row__hint\">{{ hints[card.index] }}</span>\n              <BaseCheckbox\n                type=\"switch\"\n                size=\"sm\"\n                :model-value=\"true\"\n                :aria-label=\"'Group by ' + card.field.key\"\n                @update:model-value=\"toggle(card.index)\"\n              />\n            </div>\n          </div>\n          <span :style=\"reorder.announcerStyle\" aria-live=\"polite\">{{ reorder.announcement.value }}</span>\n\n          <template v-if=\"offCards.length > 0\">\n            <span class=\"fr-label\">Left off</span>\n            <div class=\"sg-recipe\">\n              <div\n                v-for=\"card in offCards\"\n                :key=\"card.field.key\"\n                class=\"sg-field fr-row\"\n                data-test=\"field-off\"\n                :data-field=\"card.index\"\n              >\n                <span class=\"sg-field__name\">{{ card.field.key }}</span>\n                <span class=\"sg-field__role\" :class=\"{ 'sg-field__role--rep': card.field.rep }\">{{ card.field.role }}</span>\n                <span class=\"sg-field__vals\">{{ card.field.vals }}</span>\n                <BaseCheckbox\n                  type=\"switch\"\n                  size=\"sm\"\n                  :model-value=\"false\"\n                  :aria-label=\"'Group by ' + card.field.key\"\n                  @update:model-value=\"toggle(card.index)\"\n                />\n              </div>\n            </div>\n          </template>\n\n          <!-- inline plain-english summary -->\n          <div v-if=\"summary.kind === 'mute'\" class=\"sg-summary fr-summary--mute\">\n            <span class=\"sg-summary__icon\"><Icon :d=\"ICON.info\" :size=\"16\" /></span>\n            <span>Turn on at least one field to form groups.</span>\n          </div>\n          <div v-else-if=\"summary.kind === 'warn'\" class=\"sg-summary sg-summary--warn\">\n            <span class=\"sg-summary__icon\"><Icon :d=\"ICON.warn\" :size=\"16\" /></span>\n            <span>\n              Including <b>{{ repOnField?.key }}</b> makes every sample unique —\n              <b>{{ baseGroups.length }} groups of 1</b>. Switch it off to keep replicates together.\n            </span>\n          </div>\n          <div v-else-if=\"summary.kind === 'singletons'\" class=\"sg-summary sg-summary--warn\">\n            <span class=\"sg-summary__icon\"><Icon :d=\"ICON.warn\" :size=\"16\" /></span>\n            <span>\n              <b>{{ counts.filter(count => count === 1).length }} of {{ baseGroups.length }} groups</b> have one sample.\n              Switch off a field to form larger groups.\n            </span>\n          </div>\n          <div v-else class=\"sg-summary\">\n            <span class=\"sg-summary__icon\"><Icon :d=\"ICON.info\" :size=\"16\" /></span>\n            <span>\n              Grouping by <b>{{ activeFactors.join(' × ') }}</b> →\n              <b>{{ baseGroups.length }} groups<template v-if=\"uniform\"> of {{ counts[0] }}</template></b>.\n            </span>\n          </div>\n        </template>\n      </div>\n\n      <!-- rail -->\n      <div class=\"sg-body__side\">\n        <div class=\"sg-preview__head\">\n          Resulting groups\n          <span class=\"sg-preview__count\">{{ groups.length }} groups · {{ groupedSampleTotal }} samples</span>\n        </div>\n        <div class=\"sg-grouplist\">\n          <div v-if=\"groups.length === 0\" class=\"fr-empty\">No groups yet — pick a field to start.</div>\n          <div v-for=\"group in groups\" v-else :key=\"group.name\" class=\"sg-group\">\n            <span class=\"sg-dot\" :style=\"group.name === QC_POOL_NAME ? QC_DOT_STYLE : { background: group.color }\" />\n            <span class=\"sg-group__name\">{{ group.name }}</span>\n            <span\n              class=\"sg-group__bar\"\n              :style=\"{ width: (MAX_BAR * group.count) / maxCount + 'px', '--g': group.color }\"\n            />\n            <span class=\"sg-group__count\">{{ group.count }}</span>\n          </div>\n        </div>\n\n        <div class=\"sg-qc\">\n          <div class=\"sg-qc__head\">\n            <span class=\"sg-qc__title\">Quality control</span>\n            <SegmentedControl\n              class=\"fr-qc__route\"\n              size=\"sm\"\n              variant=\"card\"\n              aria-label=\"Quality control routing\"\n              :model-value=\"currentRoute\"\n              :options=\"QC_ROUTE_OPTIONS\"\n              @update:model-value=\"onRouteChange($event as QcRoute)\"\n            />\n          </div>\n          <div class=\"fr-qc__chips\">\n            <span\n              v-for=\"chip in qcChips\"\n              :key=\"chip.name\"\n              class=\"sg-qc__chip\"\n              :class=\"{ 'fr-qc__chip--off': currentRoute === 'Exclude' }\"\n            >\n              <span class=\"sg-dot\" :style=\"QC_DOT_STYLE\" />{{ chip.name }} ×{{ chip.count }}\n            </span>\n          </div>\n        </div>\n      </div>\n    </div>\n\n    <div class=\"sg-foot\">\n      <span class=\"sg-foot__hint\">Applies to {{ sampleTotal }} samples{{ footHint }}</span>\n      <div class=\"sg-foot__spacer\" />\n      <BaseButton variant=\"ghost\" size=\"sm\" @click=\"emit('cancel')\">Cancel</BaseButton>\n      <BaseButton variant=\"primary\" size=\"sm\" :disabled=\"activeFactors.length === 0\" @click=\"onApply\">\n        <template #icon-left><Icon :d=\"ICON.check\" :size=\"15\" /></template>\n        Apply grouping\n      </BaseButton>\n    </div>\n  </div>\n</template>\n","<script lang=\"ts\">\n/**\n * SmartGroupFieldRecipe — the \"auto\" mode of the Smart Group modal.\n *\n * MINT parses the structure of sample names into candidate fields; the user\n * switches on the factors that define their groups. A live preview rail\n * reflects the resulting groups, an inline summary explains what will happen\n * (including the replicate \"singleton trap\"), and a QC routing control decides\n * how quality-control samples are handled. Grouping maths live in the tested\n * `./SmartGroupFieldRecipe.groups` module.\n *\n * The reference-fixture defaults live in this module-scope `<script>` block\n * because `defineProps` default factories are hoisted and cannot reference\n * bindings declared inside `<script setup>`.\n */\nimport type { SmartGroupField, SmartGroupSampleRecord } from './SmartGroupFieldRecipe.groups'\nimport { SAMPLE_GROUP_TOKENS } from '../utils/color'\n\nconst FR_BASE = [\n  { Condition: 'Control', Dose: 'Vehicle' },\n  { Condition: 'Treatment', Dose: 'Low' },\n  { Condition: 'Treatment', Dose: 'High' },\n]\nconst DEFAULT_SAMPLES: SmartGroupSampleRecord[] = FR_BASE.flatMap(base =>\n  [1, 2, 3].map(rep => ({ ...base, Replicate: `Rep${rep}` })),\n)\nconst DEFAULT_FIELDS: SmartGroupField[] = [\n  { key: 'Condition', role: 'Factor', vals: 'Control, Treatment', rep: false },\n  { key: 'Dose', role: 'Factor', vals: 'Vehicle, Low, High', rep: false },\n  { key: 'Replicate', role: 'Replicate', vals: 'Rep1, Rep2, Rep3', rep: true },\n]\nconst DEFAULT_PALETTE = [...SAMPLE_GROUP_TOKENS]\n</script>\n\n<script setup lang=\"ts\">\nimport { computed, h, nextTick, ref, type FunctionalComponent } from 'vue'\nimport {\n  appendQcGroup,\n  computeFieldGroups,\n  fieldRecipeSummary,\n  QC_POOL_NAME,\n  sampleTotalFor,\n  type QcRoute,\n} from './SmartGroupFieldRecipe.groups'\nimport { sampleTypeMarker } from '../utils/sampleTypeMarker'\nimport { useListReorder } from '../composables/useListReorder'\nimport ActionMenu from './ActionMenu.vue'\nimport BaseButton from './BaseButton.vue'\nimport BaseCheckbox from './BaseCheckbox.vue'\nimport LoadingSpinner from './LoadingSpinner.vue'\nimport SegmentedControl from './SegmentedControl.vue'\nimport type { ActionMenuItem } from '../types/components'\nimport type { FieldRecipeApplyPayload, FieldRecipeQcChip, SmartGroupFieldRecipeProps } from './SmartGroup.types'\n\nconst props = withDefaults(defineProps<SmartGroupFieldRecipeProps>(), {\n  samples: () => DEFAULT_SAMPLES,\n  fields: () => DEFAULT_FIELDS,\n  experimentLabel: 'EXP-014',\n  headerCount: 12,\n  initialRoute: 'Overlay only',\n  palette: () => DEFAULT_PALETTE,\n  qcColor: 'var(--mint-sample-9)',\n  canDownloadTemplate: true,\n  loading: false,\n  renamable: false,\n})\n\nconst emit = defineEmits<{\n  apply: [payload: FieldRecipeApplyPayload]\n  cancel: []\n  manual: []\n  close: []\n  /** Controlled mode: a field toggle was clicked (card index). */\n  toggle: [index: number]\n  /** A field moved one layer (card index). A drag over several layers emits one event for each step. */\n  move: [index: number, direction: 'up' | 'down']\n  /** The user gave a field a new name (card index). */\n  rename: [index: number, name: string]\n  /** Controlled mode: the QC routing select changed. */\n  'update:route': [route: QcRoute]\n  /** A CSV/TSV file was chosen (upload button) or dropped; parent parses it. */\n  'csv-file': [file: File]\n  /** Download a blank metadata template (parent calls the engine). */\n  'download-template': []\n  /** Download a pre-filled metadata template (parent calls the engine). */\n  'download-prefilled': []\n}>()\n\n/** Tiny stroke-icon helper sharing the design's path data. */\nconst Icon: FunctionalComponent<{ d: string; size?: number }> = iconProps =>\n  h(\n    'svg',\n    {\n      width: iconProps.size ?? 16,\n      height: iconProps.size ?? 16,\n      viewBox: '0 0 24 24',\n      fill: 'none',\n      stroke: 'currentColor',\n      'stroke-width': 2,\n      'stroke-linecap': 'round',\n      'stroke-linejoin': 'round',\n    },\n    [h('path', { d: iconProps.d })],\n  )\nconst ICON = {\n  bolt: 'M13 10V3L4 14h7v7l9-11h-7z',\n  info: 'M12 16v-4M12 8h.01M21 12a9 9 0 11-18 0 9 9 0 0118 0z',\n  warn: 'M12 9v4M12 17h.01M10.29 3.86L1.82 18a2 2 0 001.71 3h16.94a2 2 0 001.71-3L13.71 3.86a2 2 0 00-3.42 0z',\n  check: 'M20 6L9 17l-5-5',\n  close: 'M6 18L18 6M6 6l12 12',\n  upload: 'M21 15v4a2 2 0 01-2 2H5a2 2 0 01-2-2v-4M17 8l-5-5-5 5M12 3v12',\n  chev: 'M6 9l6 6 6-6',\n  grip: 'M9 6h.01M9 12h.01M9 18h.01M15 6h.01M15 12h.01M15 18h.01',\n  pencil: 'M12 20h9M16.5 3.5a2.12 2.12 0 013 3L7 19l-4 1 1-4L16.5 3.5z',\n}\n\nconst MAX_BAR = 44\n/** QC reads the same everywhere: neutral solid ring, never a group color (3a). */\nconst QC_DOT_STYLE = sampleTypeMarker('qc', '').style\n\n// CSV upload (presentational): the component only surfaces the control and\n// emits the chosen/dropped File; AutoGroupModalInternal parses it into the engine.\nconst fileInput = ref<HTMLInputElement | null>(null)\nconst dragOver = ref(false)\nlet dragDepth = 0\n\nfunction isCsvLike(file: File): boolean {\n  return /\\.(csv|tsv)$/i.test(file.name)\n    || file.type === 'text/csv'\n    || file.type === 'text/tab-separated-values'\n}\nfunction pickCsv() {\n  fileInput.value?.click()\n}\nfunction onFileChange(event: Event) {\n  const input = event.target as HTMLInputElement\n  const file = input.files?.[0]\n  if (file) emit('csv-file', file)\n  input.value = '' // allow re-selecting the same file\n}\nfunction onDragEnter(event: DragEvent) {\n  // A field row dragged to a new layer is not a file drop.\n  if (!event.dataTransfer?.types.includes('Files')) return\n  dragDepth += 1\n  dragOver.value = true\n}\nfunction onDragLeave() {\n  dragDepth = Math.max(0, dragDepth - 1)\n  if (dragDepth === 0) dragOver.value = false\n}\nfunction onDrop(event: DragEvent) {\n  dragDepth = 0\n  dragOver.value = false\n  const file = event.dataTransfer?.files?.[0]\n  if (file && isCsvLike(file)) emit('csv-file', file)\n}\n\nconst csvMenuItems = computed<ActionMenuItem[]>(() => [\n  { id: 'upload', label: 'Upload CSV' },\n  { id: 'template', label: 'Download template', disabled: !props.canDownloadTemplate },\n  { id: 'prefilled', label: 'Download pre-filled', disabled: !props.canDownloadTemplate },\n])\nfunction onCsvMenuSelect(item: ActionMenuItem) {\n  if (item.id === 'upload') pickCsv()\n  else if (item.id === 'template') emit('download-template')\n  else emit('download-prefilled')\n}\n\nconst QC_ROUTE_OPTIONS: { value: QcRoute; label: string }[] = [\n  { value: 'Overlay only', label: 'Overlay' },\n  { value: 'Exclude', label: 'Exclude' },\n  { value: 'Mix into groups', label: 'Mix in' },\n]\n\n// Uncontrolled fallback state (used by the standalone story). In controlled\n// mode AutoGroupModalInternal supplies `enabled` / `layers` / `groups` / `route` +\n// `qcChip` and the `toggle` / `move` / `update:route` events drive the engine\n// instead of this local state. `orderInner` tracks the uncontrolled layer\n// order: field indices in toggle order, first entry = hierarchy layer 1.\n// `layers` without `enabled`: the parent owns the order, the toggles are local.\nconst startLayers = props.enabled === undefined ? props.layers : undefined\nconst onInner = ref<boolean[]>(\n  props.initialOn\n    ? [...props.initialOn]\n    : startLayers?.map(layer => layer !== null) ?? props.fields.map(field => !field.rep),\n)\nconst orderInner = ref<number[]>(onInner.value.flatMap((isOn, i) => (isOn ? [i] : [])))\nconst routeInner = ref<QcRoute>(props.initialRoute)\n\nconst controlledEnabled = computed(() => props.enabled !== undefined)\nconst controlledRoute = computed(() => props.route !== undefined)\n\nconst on = computed(() => props.enabled ?? onInner.value)\nconst currentRoute = computed(() => props.route ?? routeInner.value)\n\n// Per-card hierarchy layer (1-based, null = not grouped by). Controlled mode\n// passes `layers` from the engine; controlled-without-layers keeps the legacy\n// field-order numbering; uncontrolled mode derives from the local toggle order.\nconst layers = computed<(number | null)[]>(() => {\n  if (props.layers !== undefined && controlledEnabled.value) return props.layers\n  if (props.layers !== undefined) {\n    // Local toggles over the parent's order: a field that is switched off\n    // leaves its layer, and one that is switched on goes last.\n    let last = Math.max(0, ...props.layers.map(layer => layer ?? 0))\n    return props.layers.map((layer, i) => (on.value[i] ? layer ?? ++last : null))\n  }\n  if (controlledEnabled.value) {\n    let layer = 0\n    return props.fields.map((_, i) => (on.value[i] ? ++layer : null))\n  }\n  return props.fields.map((_, i) => {\n    const pos = orderInner.value.indexOf(i)\n    return pos === -1 ? null : pos + 1\n  })\n})\n// Field indices sorted by layer — the join order for names and the summary.\nconst layerOrder = computed<number[]>(() =>\n  layers.value\n    .flatMap((layer, i) => (layer === null ? [] : [{ layer, i }]))\n    .sort((a, b) => a.layer - b.layer)\n    .map(entry => entry.i),\n)\n\n// The two lists of the layout: grouped fields in layer order, then the rest.\n// `index` is the card index that the `toggle` / `move` / `rename` events carry.\ninterface FieldCard { index: number; field: SmartGroupField }\nconst onCards = computed<FieldCard[]>(() => layerOrder.value.map(index => ({ index, field: props.fields[index] })))\nconst offCards = computed<FieldCard[]>(() =>\n  props.fields.flatMap((field, index) => (layers.value[index] === null ? [{ index, field }] : [])),\n)\n\nconst computedBase = computed(() =>\n  computeFieldGroups(props.samples, props.fields, on.value, props.palette, layerOrder.value),\n)\nconst baseGroups = computed(() => props.groups ?? computedBase.value)\nconst groups = computed(() => props.groups ?? appendQcGroup(computedBase.value, currentRoute.value, props.qcColor))\nconst activeFactors = computed(() => layerOrder.value.map(i => props.fields[i].key))\nconst counts = computed(() => baseGroups.value.map(group => group.count))\nconst uniform = computed(() => counts.value.length > 0 && counts.value.every(count => count === counts.value[0]))\nconst repOnField = computed(() => props.fields.find((field, i) => field.rep && on.value[i]))\nconst repOn = computed(() => repOnField.value !== undefined)\n\nconst summary = computed(() =>\n  fieldRecipeSummary({ activeFactors: activeFactors.value, repOn: repOn.value, baseGroups: baseGroups.value }),\n)\nconst groupedSampleTotal = computed(() => groups.value.reduce((sum, group) => sum + group.count, 0))\nconst maxCount = computed(() => Math.max(...groups.value.map(group => group.count), 1))\nconst qcCount = computed(() => props.qcCount ?? Math.max(0, props.headerCount - props.samples.length))\nconst realCount = computed(() => Math.max(0, props.headerCount - qcCount.value))\nconst sampleTotal = computed(() => sampleTotalFor(currentRoute.value, realCount.value, qcCount.value))\nconst qcChips = computed<FieldRecipeQcChip[]>(() => {\n  if (props.qcChips !== undefined) return props.qcChips\n  if (props.qcChip !== undefined) return props.qcChip ? [props.qcChip] : []\n  return currentRoute.value !== 'Mix into groups' ? [{ name: 'QC_Pool', count: qcCount.value }] : []\n})\nconst footHint = computed(() =>\n  currentRoute.value === 'Exclude'\n    ? ` · ${qcCount.value} QC excluded`\n    : currentRoute.value === 'Mix into groups'\n      ? ' · QC mixed in'\n      : ` · ${qcCount.value} QC overlaid`,\n)\n\n// A toggle moves the row to the other list, a keyboard move reorders the rows\n// and a rename replaces the row. Each time the focused control is re-created,\n// so focus goes back to the same control of the same field.\nconst root = ref<HTMLElement | null>(null)\nconst controlOf = (index: number, selector: string): HTMLElement | null =>\n  root.value?.querySelector<HTMLElement>(`[data-field=\"${index}\"] ${selector}`) ?? null\nasync function refocus(index: number, selector: string) {\n  await nextTick()\n  controlOf(index, selector)?.focus()\n}\n\nfunction toggle(index: number) {\n  void refocus(index, '[role=\"switch\"]')\n  if (controlledEnabled.value) {\n    emit('toggle', index)\n    return\n  }\n  const wasOn = onInner.value[index]\n  onInner.value = onInner.value.map((value, i) => (i === index ? !value : value))\n  // A re-enabled field appends as the LAST layer, mirroring the engine.\n  orderInner.value = wasOn\n    ? orderInner.value.filter(i => i !== index)\n    : [...orderInner.value, index]\n}\n\nfunction moveLayer(index: number, direction: 'up' | 'down') {\n  if (controlledEnabled.value || props.layers !== undefined) {\n    emit('move', index, direction)\n    return\n  }\n  const from = orderInner.value.indexOf(index)\n  if (from === -1) return\n  const to = direction === 'up' ? from - 1 : from + 1\n  if (to < 0 || to >= orderInner.value.length) return\n  const next = [...orderInner.value]\n  ;[next[from], next[to]] = [next[to], next[from]]\n  orderInner.value = next\n}\n\n// Drag a grouped field to another layer, or press Alt + arrow on its handle.\nconst reorder = useListReorder<FieldCard>({\n  items: () => onCards.value,\n  getId: card => card.field.key,\n  getLabel: card => card.field.key,\n  itemNoun: 'layer',\n  getElement: id => {\n    const card = onCards.value.find(candidate => candidate.field.key === id)\n    return card ? controlOf(card.index, '.fr-row__grip') : null\n  },\n  onReorder: ({ fromIndex, toIndex }) => {\n    const { index } = onCards.value[fromIndex]\n    const direction = toIndex < fromIndex ? 'up' : 'down'\n    for (let step = 0; step < Math.abs(toIndex - fromIndex); step++) moveLayer(index, direction)\n  },\n})\n\n// Inline rename of one field at a time. The name is the identity of a field,\n// so a name that another field has is refused and the input stays open.\nconst renaming = ref<number | null>(null)\nconst draftName = ref('')\nconst renameTaken = ref(false)\nconst renameInput = ref<HTMLInputElement[]>([])\nasync function startRename(card: FieldCard) {\n  renaming.value = card.index\n  renameTaken.value = false\n  draftName.value = card.field.key\n  await nextTick()\n  renameInput.value[0]?.select()\n}\nfunction endRename(card: FieldCard, restoreFocus: boolean) {\n  renaming.value = null\n  renameTaken.value = false\n  if (restoreFocus) void refocus(card.index, '.fr-row__rename')\n}\nfunction commitRename(card: FieldCard, fromBlur = false) {\n  if (renaming.value !== card.index) return\n  const name = draftName.value.trim()\n  const taken = name !== card.field.key\n    && (props.fields.some(field => field.key === name) || (props.reservedNames?.includes(name) ?? false))\n  if (taken && !fromBlur) {\n    renameTaken.value = true\n    return\n  }\n  // Leaving the input drops a name that is in use; focus stays where the user put it.\n  endRename(card, !fromBlur)\n  if (name && name !== card.field.key && !taken) emit('rename', card.index, name)\n}\n\nfunction onRouteChange(value: QcRoute) {\n  if (controlledRoute.value) {\n    emit('update:route', value)\n    return\n  }\n  routeInner.value = value\n}\n\nfunction onApply() {\n  if (activeFactors.value.length === 0) return\n  emit('apply', {\n    groups: groups.value,\n    route: currentRoute.value,\n    sampleTotal: sampleTotal.value,\n    activeFactors: activeFactors.value,\n  })\n}\n</script>\n\n<template>\n  <div ref=\"root\" class=\"sg-modal fr\">\n    <!-- header -->\n    <div class=\"sg-head\">\n      <Icon :d=\"ICON.bolt\" :size=\"18\" />\n      <span class=\"sg-head__title\">Group samples</span>\n      <span class=\"sg-head__sub\">· {{ headerCount }} samples<template v-if=\"experimentLabel\"> from {{ experimentLabel }}</template></span>\n      <div class=\"sg-head__spacer\" />\n      <ActionMenu label=\"CSV\" :items=\"csvMenuItems\" @select=\"onCsvMenuSelect\">\n        <template #trigger=\"{ open, toggle: toggleMenu, keydown }\">\n          <button\n            type=\"button\"\n            class=\"fr-upload\"\n            aria-haspopup=\"menu\"\n            :aria-expanded=\"open\"\n            @click=\"toggleMenu\"\n            @keydown=\"keydown\"\n          >\n            <Icon :d=\"ICON.upload\" :size=\"14\" /> CSV <Icon :d=\"ICON.chev\" :size=\"13\" />\n          </button>\n        </template>\n      </ActionMenu>\n      <input\n        ref=\"fileInput\"\n        type=\"file\"\n        accept=\".csv,.tsv,text/csv,text/tab-separated-values\"\n        hidden\n        @change=\"onFileChange\"\n      />\n      <div class=\"sg-mode\" role=\"tablist\" aria-label=\"Grouping mode\">\n        <button type=\"button\" class=\"sg-mode__btn sg-mode__btn--on\" role=\"tab\" :aria-selected=\"true\">Auto</button>\n        <button type=\"button\" class=\"sg-mode__btn\" role=\"tab\" :aria-selected=\"false\" @click=\"emit('manual')\">Manual</button>\n      </div>\n      <button class=\"sg-head__close\" aria-label=\"Close\" @click=\"emit('close')\">\n        <Icon :d=\"ICON.close\" :size=\"16\" />\n      </button>\n    </div>\n\n    <div class=\"sg-body\">\n      <!-- main -->\n      <div\n        class=\"sg-body__main\"\n        @dragenter.prevent=\"onDragEnter\"\n        @dragover.prevent\n        @dragleave.prevent=\"onDragLeave\"\n        @drop.prevent=\"onDrop\"\n      >\n        <div v-if=\"dragOver\" class=\"fr-dropzone\">\n          <Icon :d=\"ICON.upload\" :size=\"22\" />\n          <span>Drop CSV to load samples</span>\n        </div>\n        <div v-if=\"loading\" class=\"fr-loading\">\n          <LoadingSpinner size=\"md\" label=\"Loading experiment metadata\" />\n          <span>Loading experiment metadata…</span>\n        </div>\n        <div v-if=\"fields.length === 0 && headerCount === 0 && !loading\" class=\"fr-blank\" data-test=\"recipe-empty\">\n          <span class=\"sg-lead__q\">No samples to group</span>\n          <span class=\"sg-lead__hint\">\n            Upload a CSV with one sample column and one column for each field, or close this dialog and select\n            samples first.\n          </span>\n          <BaseButton variant=\"secondary\" size=\"sm\" @click=\"pickCsv\">\n            <template #icon-left><Icon :d=\"ICON.upload\" :size=\"15\" /></template>\n            Upload CSV\n          </BaseButton>\n        </div>\n        <template v-else>\n          <div v-if=\"anatomy && anatomy.length > 0\" class=\"fr-anatomy\">\n            <span class=\"fr-label\">How MINT read your names</span>\n            <div class=\"fr-anatomy__tokens\">\n              <span v-for=\"(token, t) in anatomy\" :key=\"t\" class=\"fr-token\" :class=\"'fr-token--' + token.state\">\n                <span class=\"fr-token__text\">{{ token.text }}</span>\n                <span class=\"fr-token__caption\">{{ token.caption }}</span>\n              </span>\n            </div>\n          </div>\n\n          <span class=\"fr-label\">Group by</span>\n          <div class=\"sg-recipe\">\n            <div v-if=\"onCards.length === 0\" class=\"fr-empty\">\n              {{ fields.length === 0 ? 'These sample names have no field to group by.' : 'No field is on. Switch on a field below.' }}\n            </div>\n            <div\n              v-for=\"(card, position) in onCards\"\n              :key=\"card.field.key\"\n              class=\"sg-field sg-field--on fr-row\"\n              :class=\"{\n                'fr-field--warn': card.field.rep,\n                'fr-row--dragging': reorder.isDragging(card.field.key),\n                'fr-row--over': reorder.isDragOver(card.field.key),\n              }\"\n              data-test=\"field-on\"\n              :data-field=\"card.index\"\n              :draggable=\"renaming !== card.index\"\n              @dragstart=\"reorder.onDragStart($event, card, position)\"\n              @dragover=\"reorder.onDragOver($event, card, position)\"\n              @dragleave=\"reorder.onDragLeave\"\n              @drop=\"reorder.onDrop($event, card, position)\"\n              @dragend=\"reorder.onDragEnd\"\n            >\n              <button\n                type=\"button\"\n                class=\"fr-row__grip\"\n                :aria-label=\"`Move ${card.field.key}, layer ${position + 1} of ${onCards.length}. Press Alt and an arrow key.`\"\n                @keydown=\"reorder.onKeydown($event, card, position)\"\n              >\n                <Icon :d=\"ICON.grip\" :size=\"14\" />\n              </button>\n              <span class=\"fr-row__layer\">{{ position + 1 }}</span>\n              <input\n                v-if=\"renaming === card.index\"\n                ref=\"renameInput\"\n                v-model=\"draftName\"\n                class=\"fr-row__name-input\"\n                :aria-label=\"'New name for ' + card.field.key\"\n                :aria-invalid=\"renameTaken || undefined\"\n                @input=\"renameTaken = false\"\n                @keydown.enter.prevent=\"commitRename(card)\"\n                @keydown.esc.stop=\"endRename(card, true)\"\n                @blur=\"commitRename(card, true)\"\n              />\n              <span v-if=\"renaming === card.index && renameTaken\" class=\"fr-row__error\" role=\"alert\">\n                Another field has this name\n              </span>\n              <template v-else>\n                <span class=\"sg-field__name\">{{ card.field.key }}</span>\n                <button\n                  v-if=\"renamable\"\n                  type=\"button\"\n                  class=\"fr-row__rename\"\n                  :aria-label=\"'Rename ' + card.field.key\"\n                  @click=\"startRename(card)\"\n                >\n                  <Icon :d=\"ICON.pencil\" :size=\"12\" />\n                </button>\n              </template>\n              <span class=\"sg-field__vals\">{{ card.field.vals }}</span>\n              <span v-if=\"hints?.[card.index]\" class=\"fr-row__hint\">{{ hints[card.index] }}</span>\n              <BaseCheckbox\n                type=\"switch\"\n                size=\"sm\"\n                :model-value=\"true\"\n                :aria-label=\"'Group by ' + card.field.key\"\n                @update:model-value=\"toggle(card.index)\"\n              />\n            </div>\n          </div>\n          <span :style=\"reorder.announcerStyle\" aria-live=\"polite\">{{ reorder.announcement.value }}</span>\n\n          <template v-if=\"offCards.length > 0\">\n            <span class=\"fr-label\">Left off</span>\n            <div class=\"sg-recipe\">\n              <div\n                v-for=\"card in offCards\"\n                :key=\"card.field.key\"\n                class=\"sg-field fr-row\"\n                data-test=\"field-off\"\n                :data-field=\"card.index\"\n              >\n                <span class=\"sg-field__name\">{{ card.field.key }}</span>\n                <span class=\"sg-field__role\" :class=\"{ 'sg-field__role--rep': card.field.rep }\">{{ card.field.role }}</span>\n                <span class=\"sg-field__vals\">{{ card.field.vals }}</span>\n                <BaseCheckbox\n                  type=\"switch\"\n                  size=\"sm\"\n                  :model-value=\"false\"\n                  :aria-label=\"'Group by ' + card.field.key\"\n                  @update:model-value=\"toggle(card.index)\"\n                />\n              </div>\n            </div>\n          </template>\n\n          <!-- inline plain-english summary -->\n          <div v-if=\"summary.kind === 'mute'\" class=\"sg-summary fr-summary--mute\">\n            <span class=\"sg-summary__icon\"><Icon :d=\"ICON.info\" :size=\"16\" /></span>\n            <span>Turn on at least one field to form groups.</span>\n          </div>\n          <div v-else-if=\"summary.kind === 'warn'\" class=\"sg-summary sg-summary--warn\">\n            <span class=\"sg-summary__icon\"><Icon :d=\"ICON.warn\" :size=\"16\" /></span>\n            <span>\n              Including <b>{{ repOnField?.key }}</b> makes every sample unique —\n              <b>{{ baseGroups.length }} groups of 1</b>. Switch it off to keep replicates together.\n            </span>\n          </div>\n          <div v-else-if=\"summary.kind === 'singletons'\" class=\"sg-summary sg-summary--warn\">\n            <span class=\"sg-summary__icon\"><Icon :d=\"ICON.warn\" :size=\"16\" /></span>\n            <span>\n              <b>{{ counts.filter(count => count === 1).length }} of {{ baseGroups.length }} groups</b> have one sample.\n              Switch off a field to form larger groups.\n            </span>\n          </div>\n          <div v-else class=\"sg-summary\">\n            <span class=\"sg-summary__icon\"><Icon :d=\"ICON.info\" :size=\"16\" /></span>\n            <span>\n              Grouping by <b>{{ activeFactors.join(' × ') }}</b> →\n              <b>{{ baseGroups.length }} groups<template v-if=\"uniform\"> of {{ counts[0] }}</template></b>.\n            </span>\n          </div>\n        </template>\n      </div>\n\n      <!-- rail -->\n      <div class=\"sg-body__side\">\n        <div class=\"sg-preview__head\">\n          Resulting groups\n          <span class=\"sg-preview__count\">{{ groups.length }} groups · {{ groupedSampleTotal }} samples</span>\n        </div>\n        <div class=\"sg-grouplist\">\n          <div v-if=\"groups.length === 0\" class=\"fr-empty\">No groups yet — pick a field to start.</div>\n          <div v-for=\"group in groups\" v-else :key=\"group.name\" class=\"sg-group\">\n            <span class=\"sg-dot\" :style=\"group.name === QC_POOL_NAME ? QC_DOT_STYLE : { background: group.color }\" />\n            <span class=\"sg-group__name\">{{ group.name }}</span>\n            <span\n              class=\"sg-group__bar\"\n              :style=\"{ width: (MAX_BAR * group.count) / maxCount + 'px', '--g': group.color }\"\n            />\n            <span class=\"sg-group__count\">{{ group.count }}</span>\n          </div>\n        </div>\n\n        <div class=\"sg-qc\">\n          <div class=\"sg-qc__head\">\n            <span class=\"sg-qc__title\">Quality control</span>\n            <SegmentedControl\n              class=\"fr-qc__route\"\n              size=\"sm\"\n              variant=\"card\"\n              aria-label=\"Quality control routing\"\n              :model-value=\"currentRoute\"\n              :options=\"QC_ROUTE_OPTIONS\"\n              @update:model-value=\"onRouteChange($event as QcRoute)\"\n            />\n          </div>\n          <div class=\"fr-qc__chips\">\n            <span\n              v-for=\"chip in qcChips\"\n              :key=\"chip.name\"\n              class=\"sg-qc__chip\"\n              :class=\"{ 'fr-qc__chip--off': currentRoute === 'Exclude' }\"\n            >\n              <span class=\"sg-dot\" :style=\"QC_DOT_STYLE\" />{{ chip.name }} ×{{ chip.count }}\n            </span>\n          </div>\n        </div>\n      </div>\n    </div>\n\n    <div class=\"sg-foot\">\n      <span class=\"sg-foot__hint\">Applies to {{ sampleTotal }} samples{{ footHint }}</span>\n      <div class=\"sg-foot__spacer\" />\n      <BaseButton variant=\"ghost\" size=\"sm\" @click=\"emit('cancel')\">Cancel</BaseButton>\n      <BaseButton variant=\"primary\" size=\"sm\" :disabled=\"activeFactors.length === 0\" @click=\"onApply\">\n        <template #icon-left><Icon :d=\"ICON.check\" :size=\"15\" /></template>\n        Apply grouping\n      </BaseButton>\n    </div>\n  </div>\n</template>\n","/**\n * Pure cohort logic for SmartGroupManual (the \"manual\" grouping mode).\n *\n * Mirrors the design prototype's selection-first model: a flat list of samples,\n * each optionally assigned to a group / subgroup / sub-subgroup, derived into a\n * three-level cohort tree for the right rail. Framework-free for unit testing.\n */\n\n/** A sample with its (optional) manual cohort assignment. */\nexport interface ManualSample {\n  name: string\n  group: string | null\n  sub: string | null\n  sub2: string | null\n  color: string | null\n}\n\n/** Which slice of the sample list is shown. */\nexport type ManualFilter = 'all' | 'unassigned' | 'assigned'\n\n/** A sample paired with its index in the source list (so the UI can toggle it). */\nexport interface ManualMatch {\n  sample: ManualSample\n  index: number\n}\n\n/** Second-level subgroup node: a sub-subgroup name → count map. */\nexport interface CohortSubNode {\n  total: number\n  subs2: Map<string, number>\n}\n\n/** Top-level cohort node: colour, total, and its subgroups. */\nexport interface CohortNode {\n  color: string | null\n  total: number\n  subs: Map<string, CohortSubNode>\n}\n\n/** The assignment values applied to a selection. */\nexport interface CohortAssignment {\n  grp: string\n  sub: string\n  sub2: string\n  color: string\n}\n\n/**\n * Build the group → subgroup → sub-subgroup tree from assigned samples.\n * Unassigned samples are ignored. Missing sub/sub2 values collapse to `—`.\n */\nexport function buildCohortTree(samples: ManualSample[]): Map<string, CohortNode> {\n  const groups = new Map<string, CohortNode>()\n  for (const sample of samples) {\n    if (!sample.group) continue\n    if (!groups.has(sample.group)) {\n      groups.set(sample.group, { color: sample.color, total: 0, subs: new Map() })\n    }\n    const node = groups.get(sample.group)!\n    node.total++\n\n    const subKey = sample.sub || '—'\n    if (!node.subs.has(subKey)) {\n      node.subs.set(subKey, { total: 0, subs2: new Map() })\n    }\n    const subNode = node.subs.get(subKey)!\n    subNode.total++\n\n    const sub2Key = sample.sub2 || '—'\n    subNode.subs2.set(sub2Key, (subNode.subs2.get(sub2Key) ?? 0) + 1)\n  }\n  return groups\n}\n\n/** Filter the sample list by a case-insensitive name query and assignment state. */\nexport function filterSamples(\n  samples: ManualSample[],\n  query: string,\n  filter: ManualFilter,\n): ManualMatch[] {\n  const q = query.trim().toLowerCase()\n  return samples\n    .map((sample, index) => ({ sample, index }))\n    .filter(({ sample }) => {\n      if (q && !sample.name.toLowerCase().includes(q)) return false\n      if (filter === 'unassigned') return !sample.group\n      if (filter === 'assigned') return !!sample.group\n      return true\n    })\n}\n\n/**\n * Apply a cohort assignment to the selected sample indices, returning a new list.\n * Blank subgroup / sub-subgroup values become `null`.\n */\nexport function assignSamples(\n  samples: ManualSample[],\n  selected: ReadonlySet<number>,\n  assignment: CohortAssignment,\n): ManualSample[] {\n  return samples.map((sample, index) =>\n    selected.has(index)\n      ? {\n          ...sample,\n          group: assignment.grp.trim(),\n          sub: assignment.sub.trim() || null,\n          sub2: assignment.sub2.trim() || null,\n          color: assignment.color,\n        }\n      : sample,\n  )\n}\n","<script lang=\"ts\">\n/**\n * SmartGroupManual — the \"manual\" mode of the Smart Group modal.\n *\n * Selection-first grouping for when sample names can't be parsed automatically:\n * a wide searchable/filterable sample list on the left, a persistent Cohorts\n * rail with a progress meter and group → subgroup → sub-subgroup tree on the\n * right, and a contextual assignment bar that slides up only once samples are\n * selected. Cohort derivation lives in the tested `./SmartGroupManual.cohorts`\n * module.\n *\n * The reference-fixture defaults live in this module-scope `<script>` block\n * because `defineProps` default factories are hoisted and cannot reference\n * bindings declared inside `<script setup>`.\n */\nimport type { ManualPaletteEntry, SmartGroupSeed } from './SmartGroup.types'\n\nconst DEFAULT_NAMES = [\n  'Pt001_TumorA_d7_rep1',\n  'Pt001_TumorA_d7_rep1_reseq2024',\n  'Pt001_TumorA_d14_rep1',\n  'Pt002_TumorB_d7_rep1',\n  'Pt002_tumorb_d7_rep2',\n  'Pt002_TumorB_d14_rep1',\n  'Pt003_NoID_d7_rep1',\n  'Pt003_TumorC_d14_rep1_redo',\n  'Ctrl_pooled_old_naming',\n  'control_2_(redo)',\n  'Pt004_TumorA_d7_2024batch2',\n  'Pt004_TumorA_d14',\n  'QC_pool_01',\n  'blank_run3',\n]\nconst DEFAULT_SEED: Record<string, SmartGroupSeed> = {\n  Pt001_TumorA_d7_rep1: { group: 'Responder', sub: 'Day 7', sub2: 'Batch 1', color: 'var(--mint-sample-2)' },\n  Pt001_TumorA_d14_rep1: { group: 'Responder', sub: 'Day 14', color: 'var(--mint-sample-2)' },\n  Pt002_TumorB_d7_rep1: { group: 'Non-responder', sub: 'Day 7', sub2: 'Batch 2', color: 'var(--mint-sample-3)' },\n}\nconst DEFAULT_PALETTE: ManualPaletteEntry[] = [\n  { c: 'var(--mint-sample-1)', k: 'blue' },\n  { c: 'var(--mint-sample-2)', k: 'green' },\n  { c: 'var(--mint-sample-3)', k: 'red' },\n  { c: 'var(--mint-sample-4)', k: 'amber' },\n  { c: 'var(--mint-sample-5)', k: 'violet' },\n  { c: 'var(--mint-sample-6)', k: 'orange' },\n  { c: 'var(--mint-sample-7)', k: 'cyan' },\n  { c: 'var(--mint-sample-8)', k: 'teal' },\n]\n</script>\n\n<script setup lang=\"ts\">\nimport { computed, h, ref, type FunctionalComponent } from 'vue'\nimport {\n  assignSamples,\n  buildCohortTree,\n  filterSamples,\n  type ManualFilter,\n  type ManualSample,\n} from './SmartGroupManual.cohorts'\nimport BaseButton from './BaseButton.vue'\nimport type { ManualDonePayload, SmartGroupManualProps } from './SmartGroup.types'\n\nconst props = withDefaults(defineProps<SmartGroupManualProps>(), {\n  sampleNames: () => DEFAULT_NAMES,\n  seed: () => DEFAULT_SEED,\n  palette: () => DEFAULT_PALETTE,\n})\n\nconst emit = defineEmits<{\n  done: [payload: ManualDonePayload]\n  cancel: []\n  auto: []\n  close: []\n}>()\n\nconst Icon: FunctionalComponent<{ d: string; size?: number }> = iconProps =>\n  h(\n    'svg',\n    {\n      width: iconProps.size ?? 16,\n      height: iconProps.size ?? 16,\n      viewBox: '0 0 24 24',\n      fill: 'none',\n      stroke: 'currentColor',\n      'stroke-width': 2,\n      'stroke-linecap': 'round',\n      'stroke-linejoin': 'round',\n    },\n    [h('path', { d: iconProps.d })],\n  )\nconst ICON = {\n  search: 'M21 21l-6-6m2-5a7 7 0 11-14 0 7 7 0 0114 0z',\n  close: 'M6 18L18 6M6 6l12 12',\n  chev: 'M6 9l6 6 6-6',\n  layers: 'M12 2L2 7l10 5 10-5-10-5zM2 17l10 5 10-5M2 12l10 5 10-5',\n  arrow: 'M5 12h14M13 6l6 6-6 6',\n  check: 'M20 6L9 17l-5-5',\n}\n\n// Unique datalist ids so multiple instances on a page don't collide.\nlet mg2Uid = 0\nconst uid = ++mg2Uid\nconst groupListId = `sg-mg2-groups-${uid}`\nconst subListId = `sg-mg2-subs-${uid}`\nconst sub2ListId = `sg-mg2-subs2-${uid}`\n\nfunction buildInitial(): ManualSample[] {\n  return props.sampleNames.map(name => {\n    const seeded = props.seed[name]\n    return {\n      name,\n      group: seeded?.group ?? null,\n      sub: seeded?.sub ?? null,\n      sub2: seeded?.sub2 ?? null,\n      color: seeded?.color ?? null,\n    }\n  })\n}\n\nconst samples = ref<ManualSample[]>(buildInitial())\nconst query = ref('')\nconst filter = ref<ManualFilter>('all')\nconst sel = ref<Set<number>>(new Set())\nconst grp = ref('')\nconst sub = ref('')\nconst sub2 = ref('')\nconst color = ref(props.palette[0]?.c ?? 'var(--mint-sample-1)')\n\nconst assignedCount = computed(() => samples.value.filter(sample => sample.group).length)\nconst unassignedCount = computed(() => samples.value.length - assignedCount.value)\nconst matches = computed(() => filterSamples(samples.value, query.value, filter.value))\nconst matchIdx = computed(() => matches.value.map(match => match.index))\nconst allMatchSelected = computed(\n  () => matchIdx.value.length > 0 && matchIdx.value.every(index => sel.value.has(index)),\n)\nconst tree = computed(() => buildCohortTree(samples.value))\n\nconst existingGroups = computed(() => {\n  const map = new Map<string, string | null>()\n  samples.value.forEach(sample => {\n    if (sample.group && !map.has(sample.group)) map.set(sample.group, sample.color)\n  })\n  return map\n})\nconst groupKeys = computed(() => [...existingGroups.value.keys()])\nconst existingSubs = computed(() => [...new Set(samples.value.map(sample => sample.sub).filter(Boolean))] as string[])\nconst existingSub2 = computed(() => [...new Set(samples.value.map(sample => sample.sub2).filter(Boolean))] as string[])\n\nconst canAssign = computed(() => sel.value.size > 0 && grp.value.trim().length > 0)\nconst pct = computed(() =>\n  samples.value.length ? Math.round((assignedCount.value / samples.value.length) * 100) : 0,\n)\nconst chips = computed<{ k: ManualFilter; label: string; n: number }[]>(() => [\n  { k: 'all', label: 'All', n: samples.value.length },\n  { k: 'unassigned', label: 'Unassigned', n: unassignedCount.value },\n  { k: 'assigned', label: 'Assigned', n: assignedCount.value },\n])\n\nfunction subsWithout(node: { subs2: Map<string, number> }) {\n  return [...node.subs2.entries()].filter(([key]) => key !== '—')\n}\n\nfunction toggle(index: number) {\n  const next = new Set(sel.value)\n  next.has(index) ? next.delete(index) : next.add(index)\n  sel.value = next\n}\nfunction toggleAll() {\n  const next = new Set(sel.value)\n  if (allMatchSelected.value) matchIdx.value.forEach(index => next.delete(index))\n  else matchIdx.value.forEach(index => next.add(index))\n  sel.value = next\n}\nfunction onGroupInput(value: string) {\n  grp.value = value\n  const seeded = existingGroups.value.get(value)\n  if (seeded) {\n    // Existing cohort → adopt its colour.\n    color.value = seeded\n    return\n  }\n  // New cohort name → pick the first palette swatch not already in use, so\n  // editing a matched name into a new one doesn't bleed the previous colour.\n  const used = new Set(existingGroups.value.values())\n  color.value = props.palette.find(p => !used.has(p.c))?.c ?? props.palette[0]?.c ?? 'var(--mint-sample-1)'\n}\nfunction assign() {\n  if (sel.value.size === 0 || !grp.value.trim()) return\n  samples.value = assignSamples(samples.value, sel.value, {\n    grp: grp.value,\n    sub: sub.value,\n    sub2: sub2.value,\n    color: color.value,\n  })\n  sel.value = new Set()\n  grp.value = ''\n  sub.value = ''\n  sub2.value = ''\n}\nfunction clearSel() {\n  sel.value = new Set()\n}\nfunction onDone() {\n  emit('done', { samples: samples.value })\n}\n</script>\n\n<template>\n  <div class=\"sg-modal mg2\">\n    <!-- header -->\n    <div class=\"sg-head\">\n      <Icon :d=\"ICON.layers\" :size=\"18\" />\n      <span class=\"sg-head__title\">Group samples</span>\n      <span class=\"sg-head__sub\">· when names can’t be parsed automatically</span>\n      <div class=\"sg-head__spacer\" />\n      <div class=\"sg-mode\" role=\"tablist\" aria-label=\"Grouping mode\">\n        <button type=\"button\" class=\"sg-mode__btn\" role=\"tab\" :aria-selected=\"false\" @click=\"emit('auto')\">Auto</button>\n        <button type=\"button\" class=\"sg-mode__btn sg-mode__btn--on\" role=\"tab\" :aria-selected=\"true\">Manual</button>\n      </div>\n      <button class=\"sg-head__close\" aria-label=\"Close\" @click=\"emit('close')\">\n        <Icon :d=\"ICON.close\" :size=\"16\" />\n      </button>\n    </div>\n\n    <div class=\"mg2-body\">\n      <!-- LEFT — find & select -->\n      <div class=\"mg2-find\">\n        <div class=\"mg2-search\">\n          <Icon :d=\"ICON.search\" :size=\"15\" />\n          <input v-model=\"query\" placeholder=\"Search names — e.g. TumorA, d7, Pt002…\" />\n          <button v-if=\"query\" class=\"mg2-search__clr\" aria-label=\"Clear\" @click=\"query = ''\">\n            <Icon :d=\"ICON.close\" :size=\"13\" />\n          </button>\n        </div>\n\n        <div class=\"mg2-chips\">\n          <button\n            v-for=\"chip in chips\"\n            :key=\"chip.k\"\n            class=\"mg2-chip\"\n            :class=\"{ 'mg2-chip--on': filter === chip.k }\"\n            @click=\"filter = chip.k\"\n          >\n            {{ chip.label }}<span class=\"mg2-chip__n\">{{ chip.n }}</span>\n          </button>\n        </div>\n\n        <div class=\"mg2-selbar\">\n          <label class=\"mg2-check\">\n            <input type=\"checkbox\" :checked=\"allMatchSelected\" @change=\"toggleAll\" />\n            <span>Select all<template v-if=\"filter !== 'all'\"> {{ filter }}</template></span>\n          </label>\n          <span class=\"mg2-selbar__n\">{{ matchIdx.length }} shown</span>\n        </div>\n\n        <div class=\"mg2-list\">\n          <div v-if=\"matches.length === 0\" class=\"mg2-list__empty\">No samples match “{{ query }}”.</div>\n          <div\n            v-for=\"match in matches\"\n            :key=\"match.index\"\n            class=\"mg2-row\"\n            :class=\"{ 'mg2-row--on': sel.has(match.index) }\"\n            @click=\"toggle(match.index)\"\n          >\n            <input type=\"checkbox\" class=\"mg2-cb\" :checked=\"sel.has(match.index)\" readonly />\n            <span class=\"mg2-row__name\">{{ match.sample.name }}</span>\n            <span v-if=\"match.sample.group\" class=\"mg2-row__tag\">\n              <span class=\"sg-dot\" :style=\"{ background: match.sample.color ?? undefined }\" />{{ match.sample.group\n              }}<template v-if=\"match.sample.sub\"> · {{ match.sample.sub }}</template>\n            </span>\n            <span v-else class=\"mg2-row__tag mg2-row__tag--none\">unassigned</span>\n          </div>\n        </div>\n      </div>\n\n      <!-- RIGHT — cohorts (persistent output) -->\n      <div class=\"mg2-cohorts\">\n        <div class=\"mg2-cohorts__head\">\n          <span class=\"mg2-cohorts__t\">Cohorts</span>\n          <span class=\"mg2-cohorts__n\">{{ tree.size }} groups</span>\n        </div>\n\n        <div class=\"mg2-progress\">\n          <div class=\"mg2-progress__top\">\n            <span><b>{{ assignedCount }}</b> of {{ samples.length }} grouped</span>\n            <span class=\"mg2-progress__pct\">{{ pct }}%</span>\n          </div>\n          <div class=\"mg2-progress__track\"><div class=\"mg2-progress__fill\" :style=\"{ width: pct + '%' }\" /></div>\n        </div>\n\n        <div class=\"mg2-tree\">\n          <div v-if=\"tree.size === 0\" class=\"mg2-tree__empty\">\n            No cohorts yet. Select samples and assign them to start building.\n          </div>\n          <div v-for=\"[name, group] in [...tree.entries()]\" :key=\"name\" class=\"mg2-grp\">\n            <div class=\"mg2-grp__row\">\n              <span class=\"sg-dot\" :style=\"{ background: group.color ?? undefined }\" />\n              <span class=\"mg2-grp__name\">{{ name }}</span>\n              <span class=\"mg2-grp__n\">{{ group.total }}</span>\n            </div>\n            <template v-for=\"[subName, subNode] in [...group.subs.entries()]\" :key=\"subName\">\n              <div class=\"mg2-sub\">\n                <span class=\"mg2-sub__name\">{{ subName }}</span>\n                <span class=\"mg2-sub__n\">{{ subNode.total }}</span>\n              </div>\n              <div v-for=\"[s2, count] in subsWithout(subNode)\" :key=\"s2\" class=\"mg2-sub2\">\n                <span class=\"mg2-sub2__name\">{{ s2 }}</span>\n                <span class=\"mg2-sub2__n\">{{ count }}</span>\n              </div>\n            </template>\n          </div>\n        </div>\n\n        <button\n          v-if=\"unassignedCount > 0\"\n          class=\"mg2-unassigned\"\n          :class=\"{ 'mg2-unassigned--on': filter === 'unassigned' }\"\n          @click=\"filter = filter === 'unassigned' ? 'all' : 'unassigned'\"\n        >\n          <span class=\"sg-dot\" :style=\"{ background: 'var(--mint-sample-9)' }\" />\n          <b>{{ unassignedCount }}</b> still unassigned\n          <span class=\"mg2-unassigned__act\">{{ filter === 'unassigned' ? 'showing' : 'show' }}</span>\n        </button>\n      </div>\n    </div>\n\n    <!-- contextual assignment bar -->\n    <div class=\"mg2-bar\" :class=\"{ 'mg2-bar--open': sel.size > 0 }\">\n      <div class=\"mg2-bar__inner\">\n        <span class=\"mg2-bar__count\"><b>{{ sel.size }}</b>&nbsp;selected</span>\n        <Icon :d=\"ICON.arrow\" :size=\"16\" />\n        <div class=\"mg2-field mg2-field--grow\">\n          <span class=\"mg2-field__l\">Group</span>\n          <div class=\"mg2-combo\">\n            <span class=\"sg-dot\" :style=\"{ background: color }\" />\n            <input\n              :list=\"groupListId\"\n              :value=\"grp\"\n              placeholder=\"Type or pick — e.g. Responder\"\n              @input=\"onGroupInput(($event.target as HTMLInputElement).value)\"\n            />\n            <span class=\"mg2-combo__chev\"><Icon :d=\"ICON.chev\" :size=\"14\" /></span>\n            <datalist :id=\"groupListId\">\n              <option v-for=\"key in groupKeys\" :key=\"key\" :value=\"key\" />\n            </datalist>\n          </div>\n        </div>\n        <div class=\"mg2-field mg2-field--grow\">\n          <span class=\"mg2-field__l\">Subgroup</span>\n          <div class=\"mg2-combo\">\n            <input :list=\"subListId\" v-model=\"sub\" placeholder=\"optional — e.g. Day 7\" />\n            <datalist :id=\"subListId\">\n              <option v-for=\"value in existingSubs\" :key=\"value\" :value=\"value\" />\n            </datalist>\n          </div>\n        </div>\n        <div class=\"mg2-field mg2-field--grow\">\n          <span class=\"mg2-field__l\">Sub-subgroup</span>\n          <div class=\"mg2-combo\">\n            <input :list=\"sub2ListId\" v-model=\"sub2\" placeholder=\"optional — e.g. Batch 2\" />\n            <datalist :id=\"sub2ListId\">\n              <option v-for=\"value in existingSub2\" :key=\"value\" :value=\"value\" />\n            </datalist>\n          </div>\n        </div>\n        <div class=\"mg2-field\">\n          <span class=\"mg2-field__l\">Color</span>\n          <div class=\"mg2-swatches\">\n            <button\n              v-for=\"swatch in palette\"\n              :key=\"swatch.k\"\n              class=\"mg2-swatch\"\n              :class=\"{ 'mg2-swatch--on': color === swatch.c }\"\n              :style=\"{ background: swatch.c }\"\n              :aria-label=\"swatch.k\"\n              @click=\"color = swatch.c\"\n            />\n          </div>\n        </div>\n        <div class=\"mg2-bar__spacer\" />\n        <button class=\"mg2-bar__clear\" @click=\"clearSel\">Clear</button>\n        <button class=\"sg-btn sg-btn--primary\" :disabled=\"!canAssign\" @click=\"assign\">\n          <Icon :d=\"ICON.check\" :size=\"15\" />\n          {{ canAssign ? `Assign ${sel.size} to “${grp.trim()}”` : 'Assign' }}\n        </button>\n      </div>\n    </div>\n\n    <!-- footer -->\n    <div class=\"sg-foot\">\n      <span class=\"sg-foot__hint\">{{ assignedCount }} of {{ samples.length }} samples grouped</span>\n      <div class=\"sg-foot__spacer\" />\n      <BaseButton variant=\"ghost\" size=\"sm\" @click=\"emit('cancel')\">Cancel</BaseButton>\n      <BaseButton variant=\"primary\" size=\"sm\" @click=\"onDone\">Done</BaseButton>\n    </div>\n  </div>\n</template>\n","<script lang=\"ts\">\n/**\n * SmartGroupManual — the \"manual\" mode of the Smart Group modal.\n *\n * Selection-first grouping for when sample names can't be parsed automatically:\n * a wide searchable/filterable sample list on the left, a persistent Cohorts\n * rail with a progress meter and group → subgroup → sub-subgroup tree on the\n * right, and a contextual assignment bar that slides up only once samples are\n * selected. Cohort derivation lives in the tested `./SmartGroupManual.cohorts`\n * module.\n *\n * The reference-fixture defaults live in this module-scope `<script>` block\n * because `defineProps` default factories are hoisted and cannot reference\n * bindings declared inside `<script setup>`.\n */\nimport type { ManualPaletteEntry, SmartGroupSeed } from './SmartGroup.types'\n\nconst DEFAULT_NAMES = [\n  'Pt001_TumorA_d7_rep1',\n  'Pt001_TumorA_d7_rep1_reseq2024',\n  'Pt001_TumorA_d14_rep1',\n  'Pt002_TumorB_d7_rep1',\n  'Pt002_tumorb_d7_rep2',\n  'Pt002_TumorB_d14_rep1',\n  'Pt003_NoID_d7_rep1',\n  'Pt003_TumorC_d14_rep1_redo',\n  'Ctrl_pooled_old_naming',\n  'control_2_(redo)',\n  'Pt004_TumorA_d7_2024batch2',\n  'Pt004_TumorA_d14',\n  'QC_pool_01',\n  'blank_run3',\n]\nconst DEFAULT_SEED: Record<string, SmartGroupSeed> = {\n  Pt001_TumorA_d7_rep1: { group: 'Responder', sub: 'Day 7', sub2: 'Batch 1', color: 'var(--mint-sample-2)' },\n  Pt001_TumorA_d14_rep1: { group: 'Responder', sub: 'Day 14', color: 'var(--mint-sample-2)' },\n  Pt002_TumorB_d7_rep1: { group: 'Non-responder', sub: 'Day 7', sub2: 'Batch 2', color: 'var(--mint-sample-3)' },\n}\nconst DEFAULT_PALETTE: ManualPaletteEntry[] = [\n  { c: 'var(--mint-sample-1)', k: 'blue' },\n  { c: 'var(--mint-sample-2)', k: 'green' },\n  { c: 'var(--mint-sample-3)', k: 'red' },\n  { c: 'var(--mint-sample-4)', k: 'amber' },\n  { c: 'var(--mint-sample-5)', k: 'violet' },\n  { c: 'var(--mint-sample-6)', k: 'orange' },\n  { c: 'var(--mint-sample-7)', k: 'cyan' },\n  { c: 'var(--mint-sample-8)', k: 'teal' },\n]\n</script>\n\n<script setup lang=\"ts\">\nimport { computed, h, ref, type FunctionalComponent } from 'vue'\nimport {\n  assignSamples,\n  buildCohortTree,\n  filterSamples,\n  type ManualFilter,\n  type ManualSample,\n} from './SmartGroupManual.cohorts'\nimport BaseButton from './BaseButton.vue'\nimport type { ManualDonePayload, SmartGroupManualProps } from './SmartGroup.types'\n\nconst props = withDefaults(defineProps<SmartGroupManualProps>(), {\n  sampleNames: () => DEFAULT_NAMES,\n  seed: () => DEFAULT_SEED,\n  palette: () => DEFAULT_PALETTE,\n})\n\nconst emit = defineEmits<{\n  done: [payload: ManualDonePayload]\n  cancel: []\n  auto: []\n  close: []\n}>()\n\nconst Icon: FunctionalComponent<{ d: string; size?: number }> = iconProps =>\n  h(\n    'svg',\n    {\n      width: iconProps.size ?? 16,\n      height: iconProps.size ?? 16,\n      viewBox: '0 0 24 24',\n      fill: 'none',\n      stroke: 'currentColor',\n      'stroke-width': 2,\n      'stroke-linecap': 'round',\n      'stroke-linejoin': 'round',\n    },\n    [h('path', { d: iconProps.d })],\n  )\nconst ICON = {\n  search: 'M21 21l-6-6m2-5a7 7 0 11-14 0 7 7 0 0114 0z',\n  close: 'M6 18L18 6M6 6l12 12',\n  chev: 'M6 9l6 6 6-6',\n  layers: 'M12 2L2 7l10 5 10-5-10-5zM2 17l10 5 10-5M2 12l10 5 10-5',\n  arrow: 'M5 12h14M13 6l6 6-6 6',\n  check: 'M20 6L9 17l-5-5',\n}\n\n// Unique datalist ids so multiple instances on a page don't collide.\nlet mg2Uid = 0\nconst uid = ++mg2Uid\nconst groupListId = `sg-mg2-groups-${uid}`\nconst subListId = `sg-mg2-subs-${uid}`\nconst sub2ListId = `sg-mg2-subs2-${uid}`\n\nfunction buildInitial(): ManualSample[] {\n  return props.sampleNames.map(name => {\n    const seeded = props.seed[name]\n    return {\n      name,\n      group: seeded?.group ?? null,\n      sub: seeded?.sub ?? null,\n      sub2: seeded?.sub2 ?? null,\n      color: seeded?.color ?? null,\n    }\n  })\n}\n\nconst samples = ref<ManualSample[]>(buildInitial())\nconst query = ref('')\nconst filter = ref<ManualFilter>('all')\nconst sel = ref<Set<number>>(new Set())\nconst grp = ref('')\nconst sub = ref('')\nconst sub2 = ref('')\nconst color = ref(props.palette[0]?.c ?? 'var(--mint-sample-1)')\n\nconst assignedCount = computed(() => samples.value.filter(sample => sample.group).length)\nconst unassignedCount = computed(() => samples.value.length - assignedCount.value)\nconst matches = computed(() => filterSamples(samples.value, query.value, filter.value))\nconst matchIdx = computed(() => matches.value.map(match => match.index))\nconst allMatchSelected = computed(\n  () => matchIdx.value.length > 0 && matchIdx.value.every(index => sel.value.has(index)),\n)\nconst tree = computed(() => buildCohortTree(samples.value))\n\nconst existingGroups = computed(() => {\n  const map = new Map<string, string | null>()\n  samples.value.forEach(sample => {\n    if (sample.group && !map.has(sample.group)) map.set(sample.group, sample.color)\n  })\n  return map\n})\nconst groupKeys = computed(() => [...existingGroups.value.keys()])\nconst existingSubs = computed(() => [...new Set(samples.value.map(sample => sample.sub).filter(Boolean))] as string[])\nconst existingSub2 = computed(() => [...new Set(samples.value.map(sample => sample.sub2).filter(Boolean))] as string[])\n\nconst canAssign = computed(() => sel.value.size > 0 && grp.value.trim().length > 0)\nconst pct = computed(() =>\n  samples.value.length ? Math.round((assignedCount.value / samples.value.length) * 100) : 0,\n)\nconst chips = computed<{ k: ManualFilter; label: string; n: number }[]>(() => [\n  { k: 'all', label: 'All', n: samples.value.length },\n  { k: 'unassigned', label: 'Unassigned', n: unassignedCount.value },\n  { k: 'assigned', label: 'Assigned', n: assignedCount.value },\n])\n\nfunction subsWithout(node: { subs2: Map<string, number> }) {\n  return [...node.subs2.entries()].filter(([key]) => key !== '—')\n}\n\nfunction toggle(index: number) {\n  const next = new Set(sel.value)\n  next.has(index) ? next.delete(index) : next.add(index)\n  sel.value = next\n}\nfunction toggleAll() {\n  const next = new Set(sel.value)\n  if (allMatchSelected.value) matchIdx.value.forEach(index => next.delete(index))\n  else matchIdx.value.forEach(index => next.add(index))\n  sel.value = next\n}\nfunction onGroupInput(value: string) {\n  grp.value = value\n  const seeded = existingGroups.value.get(value)\n  if (seeded) {\n    // Existing cohort → adopt its colour.\n    color.value = seeded\n    return\n  }\n  // New cohort name → pick the first palette swatch not already in use, so\n  // editing a matched name into a new one doesn't bleed the previous colour.\n  const used = new Set(existingGroups.value.values())\n  color.value = props.palette.find(p => !used.has(p.c))?.c ?? props.palette[0]?.c ?? 'var(--mint-sample-1)'\n}\nfunction assign() {\n  if (sel.value.size === 0 || !grp.value.trim()) return\n  samples.value = assignSamples(samples.value, sel.value, {\n    grp: grp.value,\n    sub: sub.value,\n    sub2: sub2.value,\n    color: color.value,\n  })\n  sel.value = new Set()\n  grp.value = ''\n  sub.value = ''\n  sub2.value = ''\n}\nfunction clearSel() {\n  sel.value = new Set()\n}\nfunction onDone() {\n  emit('done', { samples: samples.value })\n}\n</script>\n\n<template>\n  <div class=\"sg-modal mg2\">\n    <!-- header -->\n    <div class=\"sg-head\">\n      <Icon :d=\"ICON.layers\" :size=\"18\" />\n      <span class=\"sg-head__title\">Group samples</span>\n      <span class=\"sg-head__sub\">· when names can’t be parsed automatically</span>\n      <div class=\"sg-head__spacer\" />\n      <div class=\"sg-mode\" role=\"tablist\" aria-label=\"Grouping mode\">\n        <button type=\"button\" class=\"sg-mode__btn\" role=\"tab\" :aria-selected=\"false\" @click=\"emit('auto')\">Auto</button>\n        <button type=\"button\" class=\"sg-mode__btn sg-mode__btn--on\" role=\"tab\" :aria-selected=\"true\">Manual</button>\n      </div>\n      <button class=\"sg-head__close\" aria-label=\"Close\" @click=\"emit('close')\">\n        <Icon :d=\"ICON.close\" :size=\"16\" />\n      </button>\n    </div>\n\n    <div class=\"mg2-body\">\n      <!-- LEFT — find & select -->\n      <div class=\"mg2-find\">\n        <div class=\"mg2-search\">\n          <Icon :d=\"ICON.search\" :size=\"15\" />\n          <input v-model=\"query\" placeholder=\"Search names — e.g. TumorA, d7, Pt002…\" />\n          <button v-if=\"query\" class=\"mg2-search__clr\" aria-label=\"Clear\" @click=\"query = ''\">\n            <Icon :d=\"ICON.close\" :size=\"13\" />\n          </button>\n        </div>\n\n        <div class=\"mg2-chips\">\n          <button\n            v-for=\"chip in chips\"\n            :key=\"chip.k\"\n            class=\"mg2-chip\"\n            :class=\"{ 'mg2-chip--on': filter === chip.k }\"\n            @click=\"filter = chip.k\"\n          >\n            {{ chip.label }}<span class=\"mg2-chip__n\">{{ chip.n }}</span>\n          </button>\n        </div>\n\n        <div class=\"mg2-selbar\">\n          <label class=\"mg2-check\">\n            <input type=\"checkbox\" :checked=\"allMatchSelected\" @change=\"toggleAll\" />\n            <span>Select all<template v-if=\"filter !== 'all'\"> {{ filter }}</template></span>\n          </label>\n          <span class=\"mg2-selbar__n\">{{ matchIdx.length }} shown</span>\n        </div>\n\n        <div class=\"mg2-list\">\n          <div v-if=\"matches.length === 0\" class=\"mg2-list__empty\">No samples match “{{ query }}”.</div>\n          <div\n            v-for=\"match in matches\"\n            :key=\"match.index\"\n            class=\"mg2-row\"\n            :class=\"{ 'mg2-row--on': sel.has(match.index) }\"\n            @click=\"toggle(match.index)\"\n          >\n            <input type=\"checkbox\" class=\"mg2-cb\" :checked=\"sel.has(match.index)\" readonly />\n            <span class=\"mg2-row__name\">{{ match.sample.name }}</span>\n            <span v-if=\"match.sample.group\" class=\"mg2-row__tag\">\n              <span class=\"sg-dot\" :style=\"{ background: match.sample.color ?? undefined }\" />{{ match.sample.group\n              }}<template v-if=\"match.sample.sub\"> · {{ match.sample.sub }}</template>\n            </span>\n            <span v-else class=\"mg2-row__tag mg2-row__tag--none\">unassigned</span>\n          </div>\n        </div>\n      </div>\n\n      <!-- RIGHT — cohorts (persistent output) -->\n      <div class=\"mg2-cohorts\">\n        <div class=\"mg2-cohorts__head\">\n          <span class=\"mg2-cohorts__t\">Cohorts</span>\n          <span class=\"mg2-cohorts__n\">{{ tree.size }} groups</span>\n        </div>\n\n        <div class=\"mg2-progress\">\n          <div class=\"mg2-progress__top\">\n            <span><b>{{ assignedCount }}</b> of {{ samples.length }} grouped</span>\n            <span class=\"mg2-progress__pct\">{{ pct }}%</span>\n          </div>\n          <div class=\"mg2-progress__track\"><div class=\"mg2-progress__fill\" :style=\"{ width: pct + '%' }\" /></div>\n        </div>\n\n        <div class=\"mg2-tree\">\n          <div v-if=\"tree.size === 0\" class=\"mg2-tree__empty\">\n            No cohorts yet. Select samples and assign them to start building.\n          </div>\n          <div v-for=\"[name, group] in [...tree.entries()]\" :key=\"name\" class=\"mg2-grp\">\n            <div class=\"mg2-grp__row\">\n              <span class=\"sg-dot\" :style=\"{ background: group.color ?? undefined }\" />\n              <span class=\"mg2-grp__name\">{{ name }}</span>\n              <span class=\"mg2-grp__n\">{{ group.total }}</span>\n            </div>\n            <template v-for=\"[subName, subNode] in [...group.subs.entries()]\" :key=\"subName\">\n              <div class=\"mg2-sub\">\n                <span class=\"mg2-sub__name\">{{ subName }}</span>\n                <span class=\"mg2-sub__n\">{{ subNode.total }}</span>\n              </div>\n              <div v-for=\"[s2, count] in subsWithout(subNode)\" :key=\"s2\" class=\"mg2-sub2\">\n                <span class=\"mg2-sub2__name\">{{ s2 }}</span>\n                <span class=\"mg2-sub2__n\">{{ count }}</span>\n              </div>\n            </template>\n          </div>\n        </div>\n\n        <button\n          v-if=\"unassignedCount > 0\"\n          class=\"mg2-unassigned\"\n          :class=\"{ 'mg2-unassigned--on': filter === 'unassigned' }\"\n          @click=\"filter = filter === 'unassigned' ? 'all' : 'unassigned'\"\n        >\n          <span class=\"sg-dot\" :style=\"{ background: 'var(--mint-sample-9)' }\" />\n          <b>{{ unassignedCount }}</b> still unassigned\n          <span class=\"mg2-unassigned__act\">{{ filter === 'unassigned' ? 'showing' : 'show' }}</span>\n        </button>\n      </div>\n    </div>\n\n    <!-- contextual assignment bar -->\n    <div class=\"mg2-bar\" :class=\"{ 'mg2-bar--open': sel.size > 0 }\">\n      <div class=\"mg2-bar__inner\">\n        <span class=\"mg2-bar__count\"><b>{{ sel.size }}</b>&nbsp;selected</span>\n        <Icon :d=\"ICON.arrow\" :size=\"16\" />\n        <div class=\"mg2-field mg2-field--grow\">\n          <span class=\"mg2-field__l\">Group</span>\n          <div class=\"mg2-combo\">\n            <span class=\"sg-dot\" :style=\"{ background: color }\" />\n            <input\n              :list=\"groupListId\"\n              :value=\"grp\"\n              placeholder=\"Type or pick — e.g. Responder\"\n              @input=\"onGroupInput(($event.target as HTMLInputElement).value)\"\n            />\n            <span class=\"mg2-combo__chev\"><Icon :d=\"ICON.chev\" :size=\"14\" /></span>\n            <datalist :id=\"groupListId\">\n              <option v-for=\"key in groupKeys\" :key=\"key\" :value=\"key\" />\n            </datalist>\n          </div>\n        </div>\n        <div class=\"mg2-field mg2-field--grow\">\n          <span class=\"mg2-field__l\">Subgroup</span>\n          <div class=\"mg2-combo\">\n            <input :list=\"subListId\" v-model=\"sub\" placeholder=\"optional — e.g. Day 7\" />\n            <datalist :id=\"subListId\">\n              <option v-for=\"value in existingSubs\" :key=\"value\" :value=\"value\" />\n            </datalist>\n          </div>\n        </div>\n        <div class=\"mg2-field mg2-field--grow\">\n          <span class=\"mg2-field__l\">Sub-subgroup</span>\n          <div class=\"mg2-combo\">\n            <input :list=\"sub2ListId\" v-model=\"sub2\" placeholder=\"optional — e.g. Batch 2\" />\n            <datalist :id=\"sub2ListId\">\n              <option v-for=\"value in existingSub2\" :key=\"value\" :value=\"value\" />\n            </datalist>\n          </div>\n        </div>\n        <div class=\"mg2-field\">\n          <span class=\"mg2-field__l\">Color</span>\n          <div class=\"mg2-swatches\">\n            <button\n              v-for=\"swatch in palette\"\n              :key=\"swatch.k\"\n              class=\"mg2-swatch\"\n              :class=\"{ 'mg2-swatch--on': color === swatch.c }\"\n              :style=\"{ background: swatch.c }\"\n              :aria-label=\"swatch.k\"\n              @click=\"color = swatch.c\"\n            />\n          </div>\n        </div>\n        <div class=\"mg2-bar__spacer\" />\n        <button class=\"mg2-bar__clear\" @click=\"clearSel\">Clear</button>\n        <button class=\"sg-btn sg-btn--primary\" :disabled=\"!canAssign\" @click=\"assign\">\n          <Icon :d=\"ICON.check\" :size=\"15\" />\n          {{ canAssign ? `Assign ${sel.size} to “${grp.trim()}”` : 'Assign' }}\n        </button>\n      </div>\n    </div>\n\n    <!-- footer -->\n    <div class=\"sg-foot\">\n      <span class=\"sg-foot__hint\">{{ assignedCount }} of {{ samples.length }} samples grouped</span>\n      <div class=\"sg-foot__spacer\" />\n      <BaseButton variant=\"ghost\" size=\"sm\" @click=\"emit('cancel')\">Cancel</BaseButton>\n      <BaseButton variant=\"primary\" size=\"sm\" @click=\"onDone\">Done</BaseButton>\n    </div>\n  </div>\n</template>\n","import type { SampleClass } from '../../../types/auto-group'\n\nexport function classKey(\n  c: Pick<SampleClass, 'kind'> & { subKind?: string; tokenLength?: number },\n): string {\n  const base = c.subKind ? `${c.kind}:${c.subKind}` : c.kind\n  return c.tokenLength != null ? `${base}#${c.tokenLength}` : base\n}\n","{\n  \"$schema\": \"./vocab.schema.json\",\n  \"_doc\": {\n    \"purpose\": \"Sample-name classification vocabulary for the auto-group pipeline. Edit this file to teach the classifier new sample types or matrices without changing TypeScript. All matching is case-insensitive unless a pattern's regex flags say otherwise.\",\n    \"patterns\": \"Regex source strings (no surrounding slashes). Compiled with the `i` flag at load time.\",\n    \"standardAllow\": \"Tokens that should be classified as Standard even when they don't match `patterns.standard`. Case-sensitive — use the exact spelling that appears in your filenames.\",\n    \"matrixVocab\": \"Lowercase token → canonical display name. Tokens are normalised to lowercase before lookup, so adding 'tissues' handles 'Tissues' / 'TISSUES' / 'tissues' uniformly. Multiple aliases map to one canonical (e.g. cell + cells → Cells).\",\n    \"ionizationModes\": \"Lowercase polarity tokens (pos / positive / neg / negative). Suffixed to the subKind so POS and NEG acquisitions get independent schemas.\",\n    \"tissueParentTokens\": \"Tokens that flag the immediately-following token as the organ subKind (so `tissues / kidney` becomes Biological/Tissues, tagging both positions).\",\n    \"replicateToken\": \"Regex source for a token that names a replicate: rep1, Rep2, replicate3, R1, T1 (technical replicate). A column whose values all match is a replicate column: it stays a visible field and is left out of the default group key. B<n> is not in the pattern: on the lab share B13 / S13 are label tokens.\"\n  },\n\n  \"patterns\": {\n    \"blank\":    \"^(blank|blk|solv?blank|matrix.?blank)$\",\n    \"iqc\":      \"^(iqc|qc|pqc|pooled.?qc)$\",\n    \"eqc\":      \"^eqc$\",\n    \"standard\": \"^(standards?|stds?\\\\d*|istd|cal(?:ibrator)?\\\\d*|.+standard)$\",\n    \"spikeIn\":  \"spike.?in\",\n    \"stock\":    \"^stock$\"\n  },\n\n  \"standardAllow\": [\n    \"ExtractionS\",\n    \"IS\",\n    \"internal.standard\"\n  ],\n\n  \"matrixVocab\": {\n    \"plasma\":  \"Plasma\",\n    \"serum\":   \"Serum\",\n    \"tissue\":  \"Tissue\",\n    \"tissues\": \"Tissues\",\n    \"kidney\":  \"Kidney\",\n    \"liver\":   \"Liver\",\n    \"tumor\":   \"Tumor\",\n    \"urine\":   \"Urine\",\n    \"brain\":   \"Brain\",\n    \"muscle\":  \"Muscle\",\n    \"adipose\": \"Adipose\",\n    \"csf\":     \"CSF\",\n    \"feces\":   \"Feces\",\n    \"faeces\":  \"Faeces\",\n    \"cells\":   \"Cells\",\n    \"cell\":    \"Cells\",\n    \"media\":   \"Media\",\n    \"medium\":  \"Medium\",\n    \"extract\": \"Extract\"\n  },\n\n  \"ionizationModes\": {\n    \"pos\":      \"POS\",\n    \"positive\": \"POS\",\n    \"neg\":      \"NEG\",\n    \"negative\": \"NEG\"\n  },\n\n  \"tissueParentTokens\": [\"tissue\", \"tissues\"],\n\n  \"replicateToken\": \"^(?:rep(?:licate)?|r|t)\\\\d+$\"\n}\n","import type { SampleClass, SampleClassKind, ClassDisposition } from '../../../types/auto-group'\nimport { classKey } from './classKey'\nimport vocabData from './vocab.json'\n\nexport interface ClassVocab {\n  blankPattern: RegExp\n  iqcPattern: RegExp\n  eqcPattern: RegExp\n  standardPattern: RegExp\n  standardAllow: Set<string>\n  spikeInPattern: RegExp\n  stockPattern: RegExp\n  /**\n   * Matrix lookup: lowercase token → canonical display name. Matching is\n   * case-insensitive, and several aliases can collapse to one display name\n   * (cell → Cells, medium → Medium).\n   */\n  matrixVocab: Map<string, string>\n  /** Lowercase polarity tokens → POS / NEG. */\n  ionizationModes: Map<string, 'POS' | 'NEG'>\n  /** Lowercase tokens that flag the next token as the organ subKind. */\n  tissueParentTokens: Set<string>\n}\n\ntype VocabFile = typeof vocabData\ntype IonMode = 'POS' | 'NEG'\n\nfunction compileVocab(data: VocabFile): ClassVocab {\n  return {\n    blankPattern: new RegExp(data.patterns.blank, 'i'),\n    iqcPattern: new RegExp(data.patterns.iqc, 'i'),\n    eqcPattern: new RegExp(data.patterns.eqc, 'i'),\n    standardPattern: new RegExp(data.patterns.standard, 'i'),\n    spikeInPattern: new RegExp(data.patterns.spikeIn, 'i'),\n    stockPattern: new RegExp(data.patterns.stock, 'i'),\n    standardAllow: new Set(data.standardAllow),\n    matrixVocab: new Map(Object.entries(data.matrixVocab)),\n    ionizationModes: new Map(\n      Object.entries(data.ionizationModes).map(([k, v]) => [k, v as IonMode]),\n    ),\n    tissueParentTokens: new Set(data.tissueParentTokens),\n  }\n}\n\nexport const classVocab: ClassVocab = compileVocab(vocabData)\n\nfunction matrixCanonical(token: string, vocab: ClassVocab): string | undefined {\n  return vocab.matrixVocab.get(token.toLowerCase())\n}\n\nfunction isTissueParentToken(token: string, vocab: ClassVocab): boolean {\n  return vocab.tissueParentTokens.has(token.toLowerCase())\n}\n\nexport interface DetectClassOptions {\n  vocab?: Partial<ClassVocab>\n  /** Per-sample explicit `sample_type` hint (e.g. from experiment design data). */\n  sampleTypeHints?: (string | undefined)[]\n  /** Number of leading tokens that all samples share (`TokenizedBatch.sharedPrefix`). */\n  sharedPrefix?: number\n}\n\n/** A token that names a QC-type class (blank, QC, standard, spike-in, stock). */\nexport function isClassMarker(token: string, vocab: ClassVocab = classVocab): boolean {\n  return (\n    vocab.blankPattern.test(token) || vocab.iqcPattern.test(token) || vocab.eqcPattern.test(token)\n    || vocab.standardPattern.test(token) || vocab.standardAllow.has(token)\n    || vocab.spikeInPattern.test(token) || vocab.stockPattern.test(token)\n  )\n}\n\n/** Kinds that form experimental groups; all other kinds are QC-type overlay classes. */\nexport function isExperimentalKind(kind: SampleClassKind): boolean {\n  return kind === 'biological' || kind === 'unknown'\n}\n\nconst DEFAULT_DISPOSITION: Record<SampleClassKind, ClassDisposition> = {\n  biological: 'group',\n  iqc: 'overlay',\n  eqc: 'overlay',\n  standard: 'overlay',\n  'spike-in': 'overlay',\n  stock: 'overlay',\n  blank: 'overlay',\n  unknown: 'group',\n}\n\nfunction classifyTokens(\n  tokens: string[],\n  vocab: ClassVocab,\n  qcFrom: number,\n): { kind: SampleClassKind; subKind?: string; tagPositions: number[] } {\n  // First-match-wins ordering: Blank → IQC → EQC → Standard → SpikeIn → Stock → Biological → Unknown.\n  // QC kinds are read from `qcFrom`: a token that all names share (the\n  // experiment title) cannot mark one sample as QC.\n  for (let i = qcFrom; i < tokens.length; i++) {\n    if (vocab.blankPattern.test(tokens[i])) return { kind: 'blank', tagPositions: [i] }\n  }\n  for (let i = qcFrom; i < tokens.length; i++) {\n    if (vocab.iqcPattern.test(tokens[i])) return { kind: 'iqc', tagPositions: [i] }\n  }\n  for (let i = qcFrom; i < tokens.length; i++) {\n    if (vocab.eqcPattern.test(tokens[i])) return { kind: 'eqc', tagPositions: [i] }\n  }\n  for (let i = qcFrom; i < tokens.length; i++) {\n    if (vocab.standardPattern.test(tokens[i]) || vocab.standardAllow.has(tokens[i])) {\n      return { kind: 'standard', tagPositions: [i] }\n    }\n  }\n  for (let i = qcFrom; i < tokens.length; i++) {\n    if (vocab.spikeInPattern.test(tokens[i])) return { kind: 'spike-in', tagPositions: [i] }\n  }\n  for (let i = qcFrom; i < tokens.length; i++) {\n    if (vocab.stockPattern.test(tokens[i])) return { kind: 'stock', tagPositions: [i] }\n  }\n  for (let i = 0; i < tokens.length; i++) {\n    const canonical = matrixCanonical(tokens[i], vocab)\n    if (canonical) {\n      const isTissueParent = isTissueParentToken(tokens[i], vocab)\n      const tagPositions = [i]\n      if (isTissueParent) {\n        // \"Tissues\"/\"Tissue\" is the parent group; tag the next token (organ name) as well.\n        if (i + 1 < tokens.length) tagPositions.push(i + 1)\n        return { kind: 'biological', subKind: 'Tissues', tagPositions }\n      }\n      // Non-parent matrix token: tag any immediately preceding \"Tissues\"/\"Tissue\" parent.\n      if (i > 0 && isTissueParentToken(tokens[i - 1], vocab)) {\n        tagPositions.unshift(i - 1)\n        return { kind: 'biological', subKind: 'Tissues', tagPositions }\n      }\n      return { kind: 'biological', subKind: canonical, tagPositions }\n    }\n  }\n  return { kind: 'unknown', tagPositions: [] }\n}\n\n/**\n * LC-MS batches run positive- and negative-ion-mode acquisitions separately,\n * and the two produce different feature tables that should never be grouped\n * together. When a POS / NEG / positive / negative token is present we suffix\n * it to the class label so the schema builder treats each mode as its own class.\n */\nfunction ionizationModeFor(\n  tokens: string[],\n  vocab: ClassVocab,\n): { mode: IonMode; position: number } | undefined {\n  for (let i = 0; i < tokens.length; i++) {\n    const mode = vocab.ionizationModes.get(tokens[i].toLowerCase())\n    if (mode) return { mode, position: i }\n  }\n  return undefined\n}\n\nfunction labelFor(kind: SampleClassKind, subKind?: string): string {\n  const base: Record<SampleClassKind, string> = {\n    biological: 'Biological',\n    iqc: 'IQC',\n    eqc: 'EQC',\n    standard: 'Standard',\n    'spike-in': 'SpikeIn',\n    stock: 'Stock',\n    blank: 'Blank',\n    unknown: 'Unknown',\n  }\n  return subKind ? `${base[kind]} / ${subKind}` : base[kind]\n}\n\n/** Classify each tokenized sample into a SampleClass. */\nexport function detectClass(\n  tokenizedSamples: string[][],\n  options: DetectClassOptions,\n): SampleClass[] {\n  const vocab = { ...classVocab, ...(options.vocab ?? {}) }\n  const hints = options.sampleTypeHints ?? []\n  const buckets = new Map<string, SampleClass>()\n\n  for (let i = 0; i < tokenizedSamples.length; i++) {\n    const hint = hints[i]?.toLowerCase()\n    let kind: SampleClassKind\n    let subKind: string | undefined\n    let tagPositions: number[]\n\n    if (hint === 'qc') {\n      kind = 'iqc'\n      tagPositions = []\n    } else if (hint === 'blank') {\n      kind = 'blank'\n      tagPositions = []\n    } else {\n      const r = classifyTokens(tokenizedSamples[i], vocab, options.sharedPrefix ?? 0)\n      kind = r.kind\n      subKind = r.subKind\n      tagPositions = r.tagPositions\n    }\n\n    // Split classes by ionization mode (POS / NEG) so the two acquisitions get\n    // independent schemas even when they share a matrix and sample-type vocab.\n    const mode = ionizationModeFor(tokenizedSamples[i], vocab)\n    if (mode) {\n      subKind = subKind ? `${subKind} / ${mode.mode}` : mode.mode\n      if (!tagPositions.includes(mode.position)) tagPositions.push(mode.position)\n    }\n\n    const key = classKey({ kind, subKind })\n    const bucket = buckets.get(key)\n    if (bucket) {\n      bucket.members.push(i)\n      for (const p of tagPositions) {\n        if (!bucket.classTagPositions.includes(p)) bucket.classTagPositions.push(p)\n      }\n    } else {\n      buckets.set(key, {\n        kind,\n        subKind,\n        label: labelFor(kind, subKind),\n        members: [i],\n        classTagPositions: [...tagPositions],\n        disposition: DEFAULT_DISPOSITION[kind],\n      })\n    }\n  }\n\n  return [...buckets.values()]\n}\n","import { isClassMarker } from './classify'\n\nconst DELIMITER_CANDIDATES = ['_', '-', ' ', '.'] as const\nexport type Delimiter = (typeof DELIMITER_CANDIDATES)[number]\n\n/** Pick the delimiter whose split produces the most consistent field count across `lines`. */\nexport function pickPrimaryDelimiter(lines: string[]): Delimiter {\n  if (lines.length === 0) return '_'\n\n  let best: Delimiter = '_'\n  let bestScore = -1\n\n  for (const candidate of DELIMITER_CANDIDATES) {\n    const counts = lines.map(l => l.split(candidate).length)\n    const frequency = new Map<number, number>()\n    for (const c of counts) frequency.set(c, (frequency.get(c) ?? 0) + 1)\n\n    // Mode and its frequency\n    let mode = 1\n    let modeFreq = 0\n    for (const [c, f] of frequency) {\n      if (f > modeFreq || (f === modeFreq && c > mode)) {\n        mode = c\n        modeFreq = f\n      }\n    }\n\n    // A delimiter that produces field count 1 didn't split anything — score 0.\n    const score = mode > 1 ? modeFreq / lines.length : 0\n    if (score > bestScore) {\n      best = candidate\n      bestScore = score\n    }\n  }\n\n  return best\n}\n\n/** Split a single sample name on `delimiter`. Empty input returns `['']` so callers\n *  always receive at least one token. */\nexport function splitMulti(name: string, delimiter: Delimiter): string[] {\n  return name.split(delimiter)\n}\n\n/** The `exp<NNN>_<date>_<operator>` fields at the start of a sample name. */\nexport interface ExperimentHeader {\n  code?: string\n  /** ISO date. Names carry it as YYMMDD, YYYYMMDD or DDMMYYYY. */\n  date?: string\n  operator?: string\n}\n\nexport interface TokenizedBatch {\n  delimiter: Delimiter\n  /** One row of tokens for each input name, in input order. */\n  rows: string[][]\n  /** Header fields with one value in the batch. They are not in `rows`. */\n  experiment: ExperimentHeader\n  /**\n   * Number of leading tokens that all rows share (normally the experiment\n   * title). They cannot tell a QC sample from a study sample.\n   */\n  sharedPrefix: number\n}\n\nconst HEADER_FIELDS = ['code', 'date', 'operator'] as const\n// Share of the names with a header that must carry the same operator before it\n// leaves the rows. The rest allows for stray names such as `exp157_test_blank_1`.\nconst OPERATOR_AGREEMENT = 0.9\n// Outside this window a 6-digit token is read day-first: `091123` is 2023-11-09, not 2009.\nconst FIRST_PLAUSIBLE_YEAR = 2015\n\nfunction isoDate(year: number, month: number, day: number): string | undefined {\n  const lastYear = new Date().getFullYear() + 1\n  if (year < FIRST_PLAUSIBLE_YEAR || year > lastYear) return undefined\n  // `Date` rolls an impossible day over to the next month; reject that.\n  const date = new Date(Date.UTC(year, month - 1, day))\n  if (date.getUTCMonth() !== month - 1 || date.getUTCDate() !== day) return undefined\n  return date.toISOString().slice(0, 10)\n}\n\n/** Read a 6- or 8-digit date token; year-first is tried before day-first. */\nexport function parseDateToken(token: string): string | undefined {\n  const n = (from: number, to: number): number => Number(token.slice(from, to))\n  if (/^\\d{8}$/.test(token)) return isoDate(n(0, 4), n(4, 6), n(6, 8)) ?? isoDate(n(4, 8), n(2, 4), n(0, 2))\n  if (/^\\d{6}$/.test(token)) return isoDate(2000 + n(0, 2), n(2, 4), n(4, 6)) ?? isoDate(2000 + n(4, 6), n(2, 4), n(0, 2))\n  return undefined\n}\n\ntype HeaderField = (typeof HEADER_FIELDS)[number]\n\n/**\n * Read the experiment code, date and operator from the left of a name, in any\n * order. `position` holds the token index of each field. A name with no code\n * and no date has no header, so `WT_Ctrl_1` keeps `WT` as a sample token.\n */\nfunction readHeader(tokens: string[]): { fields: ExperimentHeader; position: Partial<Record<HeaderField, number>> } {\n  const fields: ExperimentHeader = {}\n  const position: Partial<Record<HeaderField, number>> = {}\n  let i = 0\n  if (tokens.length > 1 && /^exp\\d+$/i.test(tokens[0])) {\n    fields.code = tokens[0].toLowerCase()\n    position.code = i++\n  }\n  for (; i < tokens.length - 1; i++) {\n    const date = fields.date ? undefined : parseDateToken(tokens[i])\n    if (date) {\n      fields.date = date\n      position.date = i\n    } else if (!fields.operator && /^[A-Z]{2,3}$/.test(tokens[i]) && !isClassMarker(tokens[i])) {\n      fields.operator = tokens[i]\n      position.operator = i\n    } else {\n      break\n    }\n  }\n  if (!fields.code && !fields.date) return { fields: {}, position: {} }\n  return { fields, position }\n}\n\nconst MS_FILE_EXTENSION = /\\.(raw|mzml|mzxml|mzdata|wiff2?|d|mgf|csv|tsv|txt)$/i\n\n/** Drop a mass-spec file extension from each name, and any other extension that all names share. */\nfunction stripExtensions(names: string[]): string[] {\n  const bare = names.map(name => name.replace(MS_FILE_EXTENSION, ''))\n  const ext = /\\.[A-Za-z][A-Za-z0-9]{0,4}$/.exec(bare[0] ?? '')?.[0]\n  return ext && bare.every(name => name.endsWith(ext)) ? bare.map(name => name.slice(0, -ext.length)) : bare\n}\n\n/**\n * Sample names → token rows.\n *\n *   1. Trim; drop a file extension that all names share.\n *   2. Split on runs of the primary delimiter.\n *   3. Drop a trailing 14-digit acquisition stamp.\n *   4. Read the experiment header. A field moves to `experiment` when the batch\n *      has one value for it. Any other field stays in the rows as written, so\n *      `QC` or `WT` after the date in some names is not taken for operator\n *      initials.\n *   5. Count the tokens that all names share after the header (the experiment\n *      title), so a title word such as `std` cannot classify the batch as QC.\n */\nexport function tokenizeBatch(names: string[]): TokenizedBatch {\n  const cleaned = stripExtensions(names.map(name => name.trim()))\n  const delimiter = pickPrimaryDelimiter(cleaned)\n  const parsed = cleaned.map(name => {\n    const split = name.split(delimiter).filter(Boolean)\n    if (split.length > 1 && /^\\d{14}$/.test(split[split.length - 1])) split.pop()\n    const tokens = split.length > 0 ? split : [name]\n    return { tokens, ...readHeader(tokens) }\n  })\n\n  const experiment: ExperimentHeader = {}\n  for (const field of ['code', 'date'] as const) {\n    const values = new Set(parsed.map(({ fields }) => fields[field]).filter(Boolean))\n    if (values.size === 1) experiment[field] = [...values][0]\n  }\n  // `exp<NNN>` and a date are clear by their form. Operator initials are not:\n  // `QC`, `WT` or `KO` look the same. The operator is the caps token that\n  // (almost) all complete headers carry; any other caps token stays in its row.\n  const dated = parsed.filter(({ fields }) => fields.date)\n  const complete = dated.length > 0 ? dated : parsed.filter(({ fields }) => fields.code)\n  const operatorCounts = new Map<string, number>()\n  for (const { fields } of complete) {\n    if (fields.operator) operatorCounts.set(fields.operator, (operatorCounts.get(fields.operator) ?? 0) + 1)\n  }\n  const [operator, count] = [...operatorCounts].sort((a, b) => b[1] - a[1])[0] ?? []\n  if (operator && count >= complete.length * OPERATOR_AGREEMENT) experiment.operator = operator\n\n  const rows = parsed.map(({ tokens, fields, position }) => {\n    const moved = new Set(\n      HEADER_FIELDS.filter(field => experiment[field] && fields[field] === experiment[field]).map(field => position[field]),\n    )\n    return tokens.filter((_, index) => !moved.has(index))\n  })\n\n  // A title exists only after a header; without one a shared first token can\n  // be the QC marker of a QC-only paste.\n  let sharedPrefix = 0\n  if (rows.length > 1 && Object.keys(experiment).length > 0) {\n    while (rows.every(row => row.length > sharedPrefix + 1 && row[sharedPrefix] === rows[0][sharedPrefix])) sharedPrefix++\n    // When only numbers follow, the shared tokens are the sample description\n    // (a QC-only batch: `QC_1`, `QC_2`), not a title.\n    if (rows.every(row => row.slice(sharedPrefix).every(token => /^\\d+[A-Za-z]?$/.test(token)))) sharedPrefix = 0\n  }\n\n  return { delimiter, experiment, rows, sharedPrefix }\n}\n","import type {\n  ColumnInfo,\n  ColumnRole,\n  ClassSchema,\n  NumericParse,\n  SampleClassKind,\n} from '../../../types/auto-group'\nimport vocabData from './vocab.json'\n\nconst NUMERIC_VALUE_UNIT = /^(\\d+(?:(?:dot|\\.)\\d+)?)([A-Za-z%/μ]+)$/\nconst RATIO = /^(\\d+)to(\\d+)$/\nconst RUN_ORDER_PATTERN = /^\\d{2,4}[A-Z]?$/\n// Explicit replicate-token vocabulary: rep1 / Rep2 / replicate1 / R1 / T1.\n// These tokens almost always identify a within-group replicate dimension that\n// users do NOT want in the default group key — e.g. ctrl/rep1, ctrl/rep2\n// should land in one Ctrl group with two replicates, not two singleton groups.\nconst REPLICATE_TOKEN_PATTERN = new RegExp(vocabData.replicateToken, 'i')\n/**\n * A replicate counter is a dense run of small numbers or letters: `1, 2, 3`,\n * `01, 02, 03` or `A, B, C`. A quarter of the run can be missing (a failed\n * sample). `1, 5, 10` is a dose and `1, 2, 6, 7` an animal number: too sparse.\n */\nfunction isCounterRun(values: string[]): boolean {\n  if (!values.every(value => /^(\\d{1,2}|[A-Za-z])$/.test(value))) return false\n  // One batch can count some replicates 1, 2, 3 and others a, b, c.\n  const ranks = [...new Set(values.map(value => (/\\d/.test(value) ? Number(value) : value.toUpperCase().charCodeAt(0) - 64)))]\n  const allowedGaps = Math.max(1, Math.floor(ranks.length / 4))\n  return Math.min(...ranks) >= 1 && Math.max(...ranks) <= ranks.length + allowedGaps\n}\n\n// A stem with a counter attached: C1, C2, H1.\nconst STEM_COUNTER_PATTERN = /^([A-Za-z]+)(\\d{1,2})$/\n// Share of a column that must agree before the column is split or read as\n// one-value-for-each-sample. The rest allows for odd names and re-injections.\nconst COLUMN_AGREEMENT = 0.9\nconst ID_MIN_CLASS_SIZE = 4\n\n/** Roles the Field Recipe offers as grouping fields. `replicate` and `id` are off by default. */\nexport const GROUPING_FIELD_ROLES: ReadonlySet<ColumnRole | undefined> = new Set<ColumnRole>([\n  'factor', 'numeric', 'replicate', 'id',\n])\n\n// Real-world LC-MS batches often have 30+ distinct conditions (subject IDs,\n// calibration levels, treatment combinations) in a single class. The earlier\n// cutoff of 20 routed everything above it to `ignore`, leaving such columns\n// out of the default groupBy — meaning a single giant group with no useful\n// split. 50 covers the common cases without making singleton-heavy columns\n// (sample IDs, timestamps) into factors.\nconst DEFAULT_FACTOR_CARDINALITY_MAX = 50\n// Numerics with only a handful of distinct levels (e.g. `5min` / `10min`,\n// `1nM` / `5nM` / `25nM`) read as factor levels by default. Users opt into\n// numeric binning explicitly via the column popover when they want it.\nconst LOW_CARDINALITY_NUMERIC_AS_FACTOR_MAX = 5\n\nexport function parseNumeric(token: string): NumericParse | null {\n  const ratio = RATIO.exec(token)\n  if (ratio) {\n    const num = Number(ratio[1])\n    const den = Number(ratio[2])\n    if (den === 0) return null\n    return { value: num / den, unit: 'ratio', raw: token }\n  }\n  const m = NUMERIC_VALUE_UNIT.exec(token)\n  if (!m) return null\n  const valueStr = m[1].replace(/dot/g, '.')\n  const value = Number(valueStr)\n  if (Number.isNaN(value)) return null\n  return { value, unit: m[2], raw: token }\n}\n\nexport interface InferRoleInput {\n  values: string[]\n  position: number\n  totalPositions: number\n  classSize: number\n  /** The column ends a name or a split token, where replicate counters sit. Defaults to the last position. */\n  tail?: boolean\n}\n\nexport function inferRole(input: InferRoleInput): ColumnRole {\n  const { values, position, totalPositions, classSize } = input\n  const tail = input.tail ?? position === totalPositions - 1\n  const unique = new Set(values)\n  const cardinality = unique.size\n\n  if (cardinality === 1) return 'constant'\n\n  // replicate: explicit names (rep1, R1, T1), or a small counter that repeats\n  // at the end of a name (1, 2, 3, 1, 2, 3). Empty cells come from names that\n  // a column split did not match.\n  const present = values.filter(Boolean)\n  if (present.every(v => REPLICATE_TOKEN_PATTERN.test(v))) return 'replicate'\n  if (tail && cardinality * 2 <= values.length && isCounterRun(present)) return 'replicate'\n\n  // run-order: trailing position, injection-like values and high cardinality.\n  // Numbers repeat when one batch holds two experiments, so half is enough.\n  if (position === totalPositions - 1) {\n    const allRunLike = values.every(v => RUN_ORDER_PATTERN.test(v))\n    if (allRunLike && cardinality >= classSize * 0.5) return 'run-order'\n  }\n\n  // numeric: every value parses as value+unit (or ratio).\n  const allNumeric = values.every(v => parseNumeric(v) !== null)\n  if (allNumeric) {\n    // A column like 5min / 10min reads as a factor in practice — users want to\n    // group on the timepoint, not bin it.\n    if (cardinality <= LOW_CARDINALITY_NUMERIC_AS_FACTOR_MAX) return 'factor'\n    return 'numeric'\n  }\n\n  // id: one value for (almost) each sample, (almost) all with a digit — an\n  // animal or sample number (212, M10, C01). Grouping by it gives groups of\n  // one, so it is off by default. Unique words (Ctrl, DrugA, DrugB) are\n  // conditions of a design with no replicates and stay a factor.\n  if (\n    values.length >= ID_MIN_CLASS_SIZE\n    && cardinality >= values.length * COLUMN_AGREEMENT\n    && values.filter(v => /\\d/.test(v)).length >= values.length * COLUMN_AGREEMENT\n  ) return 'id'\n\n  if (cardinality <= DEFAULT_FACTOR_CARDINALITY_MAX) return 'factor'\n\n  return 'ignore'\n}\n\n/**\n * How a column splits when most of its values agree: on `-` into equal parts\n * (`2-1` → `2`, `1`), or into stem + counter (`C1` → `C`, `1`) when two or more\n * stems repeat with different counters. `D1`/`D3` (one stem) and `B13`/`S13`\n * (one counter for each stem) stay whole.\n */\nfunction columnSplitter(values: string[]): ((value: string) => string[]) | undefined {\n  const agree = (test: (value: string) => boolean): boolean =>\n    values.filter(test).length >= values.length * COLUMN_AGREEMENT\n\n  const partCounts = new Map<number, number>()\n  for (const value of values) {\n    const parts = value.split('-').length\n    partCounts.set(parts, (partCounts.get(parts) ?? 0) + 1)\n  }\n  const parts = [...partCounts].sort((a, b) => b[1] - a[1])[0]?.[0] ?? 1\n  if (parts > 1 && agree(value => value.split('-').length === parts)) {\n    return value => {\n      const pieces = value.split('-')\n      return pieces.length === parts ? pieces : [value, ...Array<string>(parts - 1).fill('')]\n    }\n  }\n\n  const countersByStem = new Map<string, Set<string>>()\n  for (const value of values) {\n    const match = STEM_COUNTER_PATTERN.exec(value)\n    if (match) countersByStem.set(match[1], (countersByStem.get(match[1]) ?? new Set()).add(match[2]))\n  }\n  const repeated = [...countersByStem.values()].filter(counters => counters.size > 1).length\n  if (countersByStem.size > 1 && repeated * 2 >= countersByStem.size && agree(value => STEM_COUNTER_PATTERN.test(value))) {\n    return value => STEM_COUNTER_PATTERN.exec(value)?.slice(1) ?? [value, '']\n  }\n  return undefined\n}\n\nexport interface ColumnSplit {\n  rows: string[][]\n  /** `origin[newIndex]` = index of the source column before the split. */\n  origin: number[]\n  /** New indices that end a split token. */\n  tail: number[]\n}\n\n/** Split the columns of one class (rows of equal length) that hold two fields in one token. */\nexport function splitColumns(rows: string[][]): ColumnSplit {\n  const width = rows[0]?.length ?? 0\n  const splitters = Array.from({ length: width }, (_, col) => columnSplitter(rows.map(row => row[col] ?? '')))\n  const origin: number[] = []\n  const tail: number[] = []\n  splitters.forEach((splitter, col) => {\n    const parts = splitter ? splitter(rows[0][col]).length : 1\n    for (let part = 0; part < parts; part++) origin.push(col)\n    if (parts > 1) tail.push(origin.length - 1)\n  })\n  return {\n    rows: rows.map(row => row.flatMap((token, col) => splitters[col]?.(token) ?? [token])),\n    origin,\n    tail,\n  }\n}\n\n/**\n * Auto-detect a friendlier column name from the column's values + role.\n * Returns null when nothing matches, so callers can fall back to \"Field N\".\n *\n * Heuristics are content-derived and deterministic. They cover the common\n * LC-MS / proteomics naming conventions; users can override anything via\n * the column popover (rename input).\n */\nfunction inferColumnName(\n  values: string[],\n  uniqueValues: string[],\n  role: ColumnRole,\n): string | null {\n  if (uniqueValues.length === 0) return null\n\n  // Numeric+unit columns name themselves by the dominant unit category.\n  // We tally all values so a mixed-unit column (`1uL`, `1nM`) picks the\n  // majority rather than the first sample's unit.\n  const allNumeric = (role === 'numeric' || role === 'factor') && values.every(v => parseNumeric(v) !== null)\n  if (allNumeric) {\n    const categoryFor = (u: string): string | null => {\n      const ul = u.toLowerCase()\n      if (['min', 'sec', 's', 'hr', 'h', 'd', 'day', 'days', 'wk', 'week', 'hour', 'hours'].includes(ul)) return 'Timepoint'\n      if (['nm', 'um', 'mm', 'm', 'molar', 'mol'].includes(ul)) return 'Concentration'\n      if (['mg', 'g', 'kg', 'ng', 'ug', 'pg'].includes(ul)) return 'Mass'\n      if (['ml', 'l', 'ul', 'nl', 'pl'].includes(ul)) return 'Volume'\n      if (ul === '%') return 'Percentage'\n      if (['c', 'k', 'celsius', 'kelvin'].includes(ul)) return 'Temperature'\n      return null\n    }\n    const tally = new Map<string, number>()\n    for (const v of values) {\n      const p = parseNumeric(v)\n      const cat = p ? categoryFor(p.unit) : null\n      if (cat) tally.set(cat, (tally.get(cat) ?? 0) + 1)\n    }\n    let best: { cat: string; count: number } | null = null\n    for (const [cat, count] of tally) {\n      if (!best || count > best.count) best = { cat, count }\n    }\n    if (best && best.count >= values.length / 2) return best.cat\n  }\n\n  // Date-like all-digits tokens (YYMMDD or YYYYMMDD).\n  if (values.every(v => /^\\d{6}$/.test(v) || /^\\d{8}$/.test(v))) return 'Date'\n\n  // Run-order column = the trailing injection / acquisition sequence number.\n  if (role === 'run-order') return 'Injection #'\n\n  // Polarity tokens (POS/NEG/positive/negative).\n  if (values.every(v => /^(pos|neg|positive|negative)$/i.test(v))) return 'Polarity'\n\n  // Common biological matrices — kept in sync with classify.ts matrixVocab.\n  if (values.every(v => /^(plasma|serum|tissue|tissues|kidney|liver|tumor|urine|brain|muscle|adipose|csf|feces|faeces|cells?|media|medium|extract)$/i.test(v))) {\n    return 'Matrix'\n  }\n\n  // Experiment / study identifiers (exp268, study42, expt7).\n  if (values.every(v => /^(exp|expt|study)\\d+$/i.test(v))) return 'Experiment'\n\n  // Operator / Username: a constant column of 2-3 uppercase letters is almost\n  // always operator initials (LCK, JD, AB). A column with two or more values\n  // (WT / KO) is a factor and gets no name here.\n  if (uniqueValues.length === 1 && /^[A-Z]{2,3}$/.test(uniqueValues[0])) return 'Username'\n\n  if (role === 'replicate') return 'Replicate'\n  if (role === 'id') return 'Sample ID'\n\n  return null\n}\n\nexport function buildClassSchema(\n  tokenizedMembers: string[][],\n  classKind: SampleClassKind,\n  subKind: string | undefined,\n  classTagPositions: number[],\n  /** Positions that end a split token (from `splitColumns`). */\n  tailPositions: number[] = [],\n): ClassSchema {\n  const totalPositions = tokenizedMembers[0]?.length ?? 0\n  const classSize = tokenizedMembers.length\n\n  const columns: ColumnInfo[] = []\n  const tagSet = new Set(classTagPositions)\n  // Replicate counters sit at the end of a name: the last position, or the one\n  // before the injection number.\n  const tailSet = new Set([...tailPositions, totalPositions - 1])\n\n  // Right to left, so the injection column is known before its neighbour.\n  for (let pos = totalPositions - 1; pos >= 0; pos--) {\n    const values = tokenizedMembers.map(t => t[pos] ?? '')\n    const uniqueValues = [...new Set(values)]\n\n    let role: ColumnRole\n    if (tagSet.has(pos) && uniqueValues.length === 1) {\n      // Only constant tag positions become class-tag; multi-valued positions (e.g. organ\n      // type within a Tissues class) fall through to normal role inference so they can be\n      // used as factor columns for grouping.\n      role = 'class-tag'\n    } else {\n      role = inferRole({ values, position: pos, totalPositions, classSize, tail: tailSet.has(pos) })\n    }\n    // Injection numbers with no zero padding (7, 18, 20) read as an id column\n    // at the last position; a counter can sit before either form.\n    const lastPosition = pos === totalPositions - 1\n    if (role === 'run-order' || (lastPosition && role === 'id')) tailSet.add(pos - 1)\n\n    const numeric =\n      role === 'numeric'\n        ? {\n            byValue: Object.fromEntries(\n              uniqueValues\n                .map(v => [v, parseNumeric(v)] as const)\n                .filter((e): e is readonly [string, NumericParse] => e[1] !== null),\n            ),\n          }\n        : undefined\n\n    const inferredName = inferColumnName(values, uniqueValues, role)\n    columns.unshift({\n      index: pos,\n      name: inferredName ?? `Field ${pos + 1}`,\n      sourceIndices: [pos],\n      uniqueValues,\n      cardinality: uniqueValues.length,\n      role,\n      numeric,\n      // Legacy field\n      type: pos === 0 ? 'prefix' : 'suffix',\n    })\n  }\n\n  // The name is the field's identity across classes, so it must be unique in\n  // a schema: a second `Date` or `Replicate` becomes `Date 2`. Grouping fields\n  // take their names first, so a card keeps `Matrix` and the constant class\n  // tag beside it becomes `Matrix 2`.\n  const nameCounts = new Map<string, number>()\n  const isField = (c: ColumnInfo): boolean => GROUPING_FIELD_ROLES.has(c.role)\n  for (const c of [...columns.filter(isField), ...columns.filter(c => !isField(c))]) {\n    const count = (nameCounts.get(c.name) ?? 0) + 1\n    nameCounts.set(c.name, count)\n    if (count > 1) c.name = `${c.name} ${count}`\n  }\n\n  const groupBy = columns.filter(c => c.role === 'factor' || c.role === 'numeric').map(c => c.index)\n\n  return { classKind, subKind, columns, groupBy }\n}\n","import type { ClassSchema, MergeSuggestion } from '../../../types/auto-group'\n\nconst THRESHOLD = 0.95\nconst MIN_CLASS_SIZE = 4\n\nfunction functionalDependency(rows: string[][], srcIdx: number, dstIdx: number): number {\n  const map = new Map<string, Set<string>>()\n  for (const row of rows) {\n    const a = row[srcIdx] ?? ''\n    const b = row[dstIdx] ?? ''\n    const set = map.get(a)\n    if (set) set.add(b)\n    else map.set(a, new Set([b]))\n  }\n  if (map.size === 0) return 0\n  let functional = 0\n  for (const set of map.values()) if (set.size === 1) functional++\n  return functional / map.size\n}\n\nexport function findMerges(schema: ClassSchema, rows: string[][]): MergeSuggestion[] {\n  if (rows.length < MIN_CLASS_SIZE) return []\n\n  const out: MergeSuggestion[] = []\n  for (let i = 0; i < schema.columns.length - 1; i++) {\n    const a = schema.columns[i]\n    const b = schema.columns[i + 1]\n    if (a.role !== 'factor' && b.role !== 'factor') continue\n\n    const forward = functionalDependency(rows, a.index, b.index)\n    const backward = functionalDependency(rows, b.index, a.index)\n    if (forward < THRESHOLD || backward < THRESHOLD) continue\n\n    const merged = new Set(rows.map(r => `${r[a.index] ?? ''}_${r[b.index] ?? ''}`))\n    if (merged.size < 2) continue\n\n    out.push({\n      classKind: schema.classKind,\n      subKind: schema.subKind,\n      columnIndices: [a.index, b.index],\n      proposedName: `Column ${a.index + 1}–${b.index + 1}`,\n      confidence: Math.min(forward, backward),\n    })\n  }\n  return out\n}\n","export const DEFAULT_COLORS = [\n  '#3B82F6', '#10B981', '#F59E0B', '#EF4444', '#8B5CF6',\n  '#EC4899', '#06B6D4', '#84CC16', '#F97316', '#6366F1',\n]\n\nexport const QC_OVERLAY_COLOR = '#6B7280'\n","import type {\n  AutoGroupResult,\n  ClassSchema,\n  ColumnInfo,\n  MetadataRow,\n  NumericBinning,\n  SampleClass,\n} from '../../../types/auto-group'\nimport type { SampleGroup } from '../../../types/components'\nimport type { TreeNode } from '../../../types/componentLabTypes'\nimport { DEFAULT_COLORS, QC_OVERLAY_COLOR } from './colors'\nimport { classKey } from './classKey'\n\nexport interface ComposeInput {\n  tokenizedSamples: string[][]\n  sampleNames: string[]\n  schemas: Record<string, ClassSchema>\n  classes: SampleClass[]\n  prefixClassLabels?: boolean\n  missingGroupName?: string\n}\n\n/** Apply the operation pipeline to a single raw token value:\n *   numeric-parse → alias → exclude → bin\n *  Returns null if the row is excluded.\n */\nfunction applyOps(col: ColumnInfo, raw: string): string | null {\n  let value = raw\n\n  // alias (operates on raw source value)\n  if (col.ops?.alias && raw in col.ops.alias) {\n    value = col.ops.alias[raw]\n  }\n\n  // exclude (post-alias)\n  if (col.ops?.exclude?.includes(raw) || col.ops?.exclude?.includes(value)) {\n    return null\n  }\n\n  // bin (only when role === 'numeric' and binning.mode === 'binned')\n  if (col.role === 'numeric' && col.binning?.mode === 'binned') {\n    const parsed = col.numeric?.byValue[raw]\n    if (parsed && col.binning.edges) {\n      const bin = pickBin(parsed.value, col.binning)\n      if (bin !== null) value = bin\n    }\n  }\n\n  return value\n}\n\nfunction pickBin(value: number, b: NumericBinning): string | null {\n  if (!b.edges || b.edges.length === 0) return null\n  for (let i = 0; i < b.edges.length; i++) {\n    if (value < b.edges[i]) {\n      return b.labels?.[i] ?? `< ${b.edges[i]}`\n    }\n  }\n  const last = b.edges[b.edges.length - 1]\n  return b.labels?.[b.edges.length] ?? `> ${last}`\n}\n\nexport function composeGroups(input: ComposeInput): AutoGroupResult {\n  const experimentalGroups: SampleGroup[] = []\n  const qcGroups: SampleGroup[] = []\n  const excludedSamples: string[] = []\n  const metadata: MetadataRow[] = []\n  let colorIdx = 0\n\n  // Class-label prefixing exists ONLY to disambiguate group names when several\n  // experimental classes could emit the same factor key (e.g. a Liver class and\n  // a Kidney class both producing \"5min / High\"). With a single experimental\n  // class there is nothing to disambiguate, so groups start directly at the\n  // user's first layer and the sample selector's major-group slot is not\n  // wasted on a constant root. When a prefix IS needed it should occupy ONE\n  // hierarchy layer, so prefer the short distinguishing `subKind` (\"Liver\")\n  // over the full label (\"Biological / Liver\") — falling back to the full\n  // label when two classes share a subKind (e.g. token-length splits).\n  const experimentalClasses = input.classes.filter(\n    c => c.disposition === 'group' && input.schemas[classKey(c)],\n  )\n  const classPrefix = new Map<SampleClass, string>()\n  if (input.prefixClassLabels !== false && experimentalClasses.length > 1) {\n    const shortCounts = new Map<string, number>()\n    for (const c of experimentalClasses) {\n      const short = c.subKind ?? c.label\n      shortCounts.set(short, (shortCounts.get(short) ?? 0) + 1)\n    }\n    for (const c of experimentalClasses) {\n      const short = c.subKind ?? c.label\n      classPrefix.set(c, (shortCounts.get(short) ?? 0) > 1 ? c.label : short)\n    }\n  }\n\n  // Nested hierarchy (class → groupBy levels → sample leaves) built alongside\n  // the flat groups. `treeIndex` lets repeated members reuse the same path node.\n  // PATH_SEP is a control char so it never collides with a real token value.\n  const PATH_SEP = String.fromCharCode(1)\n  const groupTree: TreeNode[] = []\n  const treeIndex = new Map<string, TreeNode>()\n  let treeColorIdx = 0\n\n  for (const cls of input.classes) {\n    const schema = input.schemas[classKey(cls)]\n    if (!schema) continue\n\n    if (cls.disposition === 'exclude') {\n      for (const m of cls.members) excludedSamples.push(input.sampleNames[m])\n      continue\n    }\n\n    // Per-class group map. group key built from enabled (groupBy) columns,\n    // joined with ' / ' for hierarchical display.\n    const groupMap = new Map<string, { name: string; samples: string[] }>()\n    const colByIdx = new Map(schema.columns.map(c => [c.index, c]))\n\n    // Only experimental (group) classes form the nested tree; overlay/QC stay flat.\n    const buildsTree = cls.disposition === 'group'\n    const runCol = schema.columns.find(c => c.role === 'run-order')\n    const classNodeId = classKey(cls)\n    let classNode: TreeNode | null = null\n\n    for (const m of cls.members) {\n      const tokens = input.tokenizedSamples[m]\n      const rowName = input.sampleNames[m]\n      let excluded = false\n      const fieldValues: Record<string, string> = {}\n\n      for (const col of schema.columns) {\n        const sourceValues = col.sourceIndices.map(idx => tokens[idx] ?? '')\n        const raw = sourceValues.join('_') // merged columns join their source tokens\n        const display = applyOps(col, raw)\n        if (display === null) {\n          excluded = true\n          break\n        }\n        fieldValues[col.displayName ?? col.name] = display\n      }\n\n      if (excluded) {\n        excludedSamples.push(rowName)\n        continue\n      }\n\n      const keyParts: string[] =\n        cls.disposition === 'group'\n          ? schema.groupBy.map(idx => {\n              const col = colByIdx.get(idx)!\n              return fieldValues[col.displayName ?? col.name]\n            })\n          : [cls.label]\n\n      // Prepend the class's short distinguishing label (see `classPrefix`\n      // above) so group names from different classes don't collide when they\n      // share a factor value (e.g. two tissue classes both emitting \"5min\").\n      //\n      // Only fires for disposition === 'group' classes (`classPrefix` holds no\n      // other class): overlay/exclude classes already use cls.label AS their\n      // single key part, so prefixing again would produce \"IQC / IQC\". A class\n      // with one condition has no factor keyParts and is named by the prefix\n      // alone (\"Brain\" next to \"Liver / Ctrl\"). The Unknown class opts out —\n      // its label (\"Unknown\") adds no signal.\n      const hasMissingGroupPart =\n        input.missingGroupName &&\n        cls.disposition === 'group' &&\n        keyParts.some(part => part.trim().length === 0)\n      const prefix = cls.kind !== 'unknown' ? classPrefix.get(cls) : undefined\n      const groupKey = hasMissingGroupPart\n        ? input.missingGroupName!\n        : [...(prefix ? [prefix] : []), ...keyParts].join(' / ') || cls.label\n\n      const bucket = groupMap.get(groupKey)\n      if (bucket) {\n        bucket.samples.push(rowName)\n      } else {\n        groupMap.set(groupKey, { name: groupKey, samples: [rowName] })\n      }\n\n      metadata.push({ sampleName: rowName, fields: fieldValues, group: groupKey })\n\n      // Grow the nested tree: class root → one node per groupBy column → leaf.\n      if (buildsTree) {\n        if (!classNode) {\n          classNode = {\n            id: classNodeId,\n            label: cls.label,\n            badge: 0,\n            children: [],\n            metadata: { color: DEFAULT_COLORS[treeColorIdx++ % DEFAULT_COLORS.length] },\n          }\n          treeIndex.set(classNodeId, classNode)\n          groupTree.push(classNode)\n        }\n        classNode.badge = (classNode.badge as number) + 1\n        let cursor = classNode\n        let pathId = classNodeId\n        // Reuse the already-computed groupBy values (`keyParts`) so the tree\n        // levels can never drift from the flat group key.\n        for (const val of keyParts) {\n          pathId += PATH_SEP + val\n          let node = treeIndex.get(pathId)\n          if (!node) {\n            node = { id: pathId, label: val, badge: 0, children: [] }\n            cursor.children!.push(node)\n            treeIndex.set(pathId, node)\n          }\n          node.badge = (node.badge as number) + 1\n          cursor = node\n        }\n        // Injection value goes through the column's op pipeline (alias/exclude)\n        // via `fieldValues`, matching what every other surface shows.\n        const injection = runCol ? fieldValues[runCol.displayName ?? runCol.name] : undefined\n        const leaf: TreeNode = { id: pathId + PATH_SEP + rowName, label: rowName, type: 'sample' }\n        if (injection) {\n          leaf.badge = injection\n          leaf.metadata = { injection }\n        }\n        cursor.children!.push(leaf)\n      }\n    }\n\n    for (const { name, samples } of groupMap.values()) {\n      const color =\n        cls.disposition === 'overlay'\n          ? QC_OVERLAY_COLOR\n          : DEFAULT_COLORS[colorIdx++ % DEFAULT_COLORS.length]\n      const g: SampleGroup = { name, color, samples }\n      if (cls.disposition === 'overlay') qcGroups.push(g)\n      else experimentalGroups.push(g)\n    }\n  }\n\n  return {\n    groups: [...experimentalGroups, ...qcGroups],\n    experimentalGroups,\n    qcGroups,\n    metadata,\n    excludedSamples,\n    schemas: Object.values(input.schemas),\n    groupTree,\n  }\n}\n","import type { ClassSchema, SchemaFingerprint } from '../../../types/auto-group'\n\nexport function serializeFingerprint(schemas: ClassSchema[]): SchemaFingerprint {\n  return {\n    version: 1,\n    classes: schemas.map(s => ({\n      kind: s.classKind,\n      subKind: s.subKind,\n      tokenLength: s.tokenLength,\n      columns: s.columns.map(c => ({\n        name: c.displayName ?? c.name,\n        role: c.role ?? 'factor',\n        sourceIndices: c.sourceIndices,\n        binning: c.binning,\n        ops: c.ops,\n      })),\n      groupBy: s.groupBy,\n    })),\n  }\n}\n\nexport function restoreFingerprint(\n  fp: SchemaFingerprint,\n  current: ClassSchema[],\n): ClassSchema[] {\n  return fp.classes.map(snap => {\n    // Match on token length too when the snapshot carries one, so length-split\n    // classes sharing a (kind, subKind) restore to the right schema. Snapshots\n    // saved before token-length splitting have no `tokenLength`; for those we\n    // match on (kind, subKind) and prefer the candidate with the same column\n    // count, so an old single-class fingerprint lands on the compatible split\n    // instead of throwing on the first (wrong-arity) hit.\n    const candidates = current.filter(\n      c =>\n        c.classKind === snap.kind &&\n        c.subKind === snap.subKind &&\n        (snap.tokenLength == null || c.tokenLength == null || c.tokenLength === snap.tokenLength),\n    )\n    const target =\n      candidates.find(c => c.columns.length === snap.columns.length) ?? candidates[0]\n    if (!target) {\n      throw new Error(\n        `Fingerprint class not present in current input: ${snap.kind}${snap.subKind ? '/' + snap.subKind : ''}`,\n      )\n    }\n    if (target.columns.length !== snap.columns.length) {\n      throw new Error(\n        `Saved schema expects ${snap.columns.length} columns, current data has ${target.columns.length} for class ${snap.kind}${snap.subKind ? '/' + snap.subKind : ''}. column count mismatch`,\n      )\n    }\n    return {\n      ...target,\n      groupBy: snap.groupBy,\n      columns: target.columns.map((col, i) => ({\n        ...col,\n        displayName: snap.columns[i].name,\n        role: snap.columns[i].role,\n        binning: snap.columns[i].binning,\n        ops: snap.columns[i].ops,\n      })),\n    }\n  })\n}\n","import type { ClassSchema, ColumnInfo, SampleClass } from '../../../types/auto-group'\nimport { classKey } from './classKey'\n\nexport interface TemplateOptions {\n  mode: 'blank' | 'prefilled'\n  format: 'csv' | 'tsv'\n  /** For prefilled mode. Indexed parallel to `samples`. */\n  tokenizedSamples?: string[][]\n  /** Used to compute the filename; omitted → falls back to `sample_metadata_<date>`. */\n  experimentCode?: string\n  /** Override the blank-mode suggested headers. Defaults to ['group','class','replicate','notes']. */\n  suggestedColumns?: string[]\n}\n\nconst DEFAULT_BLANK_HEADERS = ['group', 'class', 'replicate', 'notes']\n\nfunction rfc4180Quote(cell: string): string {\n  if (/[\",\\n]/.test(cell)) {\n    return `\"${cell.replace(/\"/g, '\"\"')}\"`\n  }\n  return cell\n}\n\nfunction joinRow(cells: string[], sep: string): string {\n  return sep === ','\n    ? cells.map(rfc4180Quote).join(',')\n    : cells.join('\\t')\n}\n\nfunction today(): string {\n  return new Date().toISOString().slice(0, 10)\n}\n\nexport function composeTemplate(\n  samples: string[],\n  schemas: ClassSchema[] | null,\n  classes: SampleClass[] | null,\n  options: TemplateOptions,\n): { content: string; filename: string } {\n  const sep = options.format === 'tsv' ? '\\t' : ','\n  const ext = options.format === 'tsv' ? 'tsv' : 'csv'\n\n  const stem = options.experimentCode ? `${options.experimentCode}_metadata` : 'sample_metadata'\n  const filename = `${stem}_${today()}.${ext}`\n\n  if (options.mode === 'blank' || !schemas || !classes) {\n    const headers = ['sample_name', ...(options.suggestedColumns ?? DEFAULT_BLANK_HEADERS)]\n    const rows = samples.map(s => {\n      const r = [s, ...Array(headers.length - 1).fill('')]\n      return joinRow(r, sep)\n    })\n    return { content: [joinRow(headers, sep), ...rows].join('\\n'), filename }\n  }\n\n  // Prefilled mode: union of all class columns, wide layout.\n  const tokenized = options.tokenizedSamples ?? []\n  const allColumns: { schemaKey: string; colName: string }[] = []\n\n  // Hoist: build lookup maps before the per-sample loop.\n  const sampleToClass = new Map<number, SampleClass>()\n  for (const cls of classes) for (const m of cls.members) sampleToClass.set(m, cls)\n\n  const schemaByKey = new Map<string, ClassSchema>()\n  for (const s of schemas) {\n    const k = classKey({ kind: s.classKind, subKind: s.subKind, tokenLength: s.tokenLength })\n    schemaByKey.set(k, s)\n  }\n\n  const colByNameByKey = new Map<string, Map<string, ColumnInfo>>()\n  const groupBySetByKey = new Map<string, Set<number>>()\n  for (const s of schemas) {\n    const k = classKey({ kind: s.classKind, subKind: s.subKind, tokenLength: s.tokenLength })\n    const m = new Map<string, ColumnInfo>()\n    for (const c of s.columns) m.set(c.displayName ?? c.name, c)\n    colByNameByKey.set(k, m)\n    groupBySetByKey.set(k, new Set(s.groupBy))\n    // Collect allColumns with dedup via Set\n    const seenColNames = new Set<string>()\n    for (const c of s.columns) {\n      const name = c.displayName ?? c.name\n      if (!seenColNames.has(name)) {\n        seenColNames.add(name)\n        if (!allColumns.some(x => x.colName === name)) {\n          allColumns.push({ schemaKey: k, colName: name })\n        }\n      }\n    }\n  }\n\n  const headers = ['sample_name', 'class', ...allColumns.map(c => c.colName), 'group', 'notes']\n\n  const rows: string[] = []\n  for (let i = 0; i < samples.length; i++) {\n    const cls = sampleToClass.get(i)\n    const classLabel = cls?.label ?? ''\n    const tokens = tokenized[i] ?? []\n    const cells: string[] = [samples[i], classLabel]\n\n    if (cls) {\n      const k = classKey(cls)\n      const groupBySet = groupBySetByKey.get(k)\n      const colByName: Map<string, ColumnInfo> | undefined = colByNameByKey.get(k)\n      const keyParts: string[] = []\n      for (const col of allColumns) {\n        if (col.schemaKey === k && colByName) {\n          const schemaCol = colByName.get(col.colName)\n          const raw =\n            schemaCol?.sourceIndices.map(idx => tokens[idx] ?? '').join('_') ?? ''\n          cells.push(raw)\n          if (schemaCol && groupBySet?.has(schemaCol.index)) keyParts.push(raw)\n        } else {\n          cells.push('')\n        }\n      }\n      cells.push(keyParts.join(' / '))\n    } else {\n      for (const _ of allColumns) cells.push('')\n      cells.push('')\n    }\n\n    cells.push('') // notes\n    rows.push(joinRow(cells, sep))\n  }\n\n  return { content: [joinRow(headers, sep), ...rows].join('\\n'), filename }\n}\n","import type { SampleClass } from '../../../types/auto-group'\nimport { isExperimentalKind } from './classify'\n\n/**\n * Token-length pre-grouping.\n *\n * After type classification (`detectClass`), members of one class can still have\n * different token counts — e.g. a Plasma batch where some names carry an extra\n * descriptor field. Splitting each class so every member shares the same token\n * length is the \"group same token-length sample, then extract tokens inside the\n * group\" step: it guarantees `buildClassSchema` sees a rectangular token matrix,\n * so column index N means the same field for every sample in the group.\n *\n * Each output class carries `tokenLength`; `classKey` folds that into the schema\n * key so length-split classes never collide. The label only gains a `· N fields`\n * suffix when a (kind, subKind) genuinely spans more than one length, keeping the\n * common (uniform) case visually identical to before.\n */\nexport function splitByTokenLength(\n  classes: SampleClass[],\n  tokenized: string[][],\n): SampleClass[] {\n  const out: SampleClass[] = []\n\n  for (const cls of classes) {\n    // QC-kind classes (QC, blank, standard) are one group named by the class\n    // label and never group by column, so they need no rectangular matrix.\n    if (!isExperimentalKind(cls.kind)) {\n      out.push(cls)\n      continue\n    }\n\n    // Bucket members by token count, preserving first-seen order of lengths.\n    const byLength = new Map<number, number[]>()\n    const lengthOrder: number[] = []\n    for (const m of cls.members) {\n      const len = tokenized[m]?.length ?? 0\n      const bucket = byLength.get(len)\n      if (bucket) {\n        bucket.push(m)\n      } else {\n        byLength.set(len, [m])\n        lengthOrder.push(len)\n      }\n    }\n\n    const multipleLengths = lengthOrder.length > 1\n    for (const len of lengthOrder) {\n      out.push({\n        ...cls,\n        members: byLength.get(len)!,\n        tokenLength: len,\n        // Drop class-tag positions that fall outside this split's token range.\n        classTagPositions: cls.classTagPositions.filter(p => p < len),\n        label: multipleLengths ? `${cls.label} · ${len} fields` : cls.label,\n      })\n    }\n  }\n\n  return out\n}\n","import type { ParsedCsvData } from '../../../types/auto-group'\n\nfunction parseCSVLine(line: string, delimiter: string = ','): string[] {\n  const result: string[] = []\n  let current = ''\n  let inQuotes = false\n  for (let i = 0; i < line.length; i++) {\n    const char = line[i]\n    if (char === '\"') {\n      if (inQuotes && line[i + 1] === '\"') {\n        current += '\"'\n        i++\n      } else {\n        inQuotes = !inQuotes\n      }\n    } else if (char === delimiter && !inQuotes) {\n      result.push(current.trim())\n      current = ''\n    } else {\n      current += char\n    }\n  }\n  result.push(current.trim())\n  return result\n}\n\nexport function parseCSV(text: string): ParsedCsvData {\n  const lines = text.trim().split('\\n')\n  if (lines.length < 2) throw new Error('CSV must have at least a header and one data row')\n  const firstLine = lines[0]\n  const csvDelimiter = firstLine.includes('\\t') ? '\\t' : ','\n  const headers = parseCSVLine(firstLine, csvDelimiter)\n  const rows: Record<string, string>[] = []\n  for (let i = 1; i < lines.length; i++) {\n    const values = parseCSVLine(lines[i], csvDelimiter)\n    if (values.length !== headers.length) continue\n    const row: Record<string, string> = {}\n    headers.forEach((h, idx) => { row[h] = values[idx] })\n    rows.push(row)\n  }\n  const sampleKeywords = ['sample', 'name', 'id', 'sample_name', 'samplename', 'file name', 'filename', 'file_name']\n  const sampleColumn = headers.find(h => sampleKeywords.includes(h.toLowerCase())) ?? headers[0]\n  return { columns: headers, rows, sampleColumn, delimiter: csvDelimiter }\n}\n","import { computed, ref } from 'vue'\nimport type {\n  AutoGroupResult,\n  ClassDisposition,\n  ClassSchema,\n  ColumnInfo,\n  ColumnRole,\n  InputMode,\n  MergeSuggestion,\n  NumericBinning,\n  OutlierInfo,\n  ParsedCsvData,\n  SampleClass,\n  SchemaFingerprint,\n  ValueOps,\n} from '../../types/auto-group'\nimport {\n  GROUPING_FIELD_ROLES,\n  buildClassSchema,\n  classKey,\n  composeGroups,\n  composeTemplate,\n  detectClass,\n  findMerges,\n  isExperimentalKind,\n  restoreFingerprint,\n  serializeFingerprint,\n  splitByTokenLength,\n  splitColumns,\n  tokenizeBatch,\n  type Delimiter,\n  type ExperimentHeader,\n  type TemplateOptions,\n} from './autoGroup'\nimport { unwrapExperimentDesignData } from '../../composables/experimentDesignData'\n\nconst STRUCTURED_MISSING_GROUP = 'Outlier'\n\ntype ParsedExperimentCsvData = ParsedCsvData & { sampleTypeHints: (string | undefined)[] }\n\ninterface LoadExperimentDataOptions {\n  samples?: readonly string[]\n}\n\n// Re-export `parseCSV` for callers that imported it from this file.\nexport { parseCSV } from './autoGroup/csv-shim'\n\n/**\n * Sample-grouping engine behind `AutoGroupModalInternal`. Private to `SampleSelector`.\n */\nexport function useAutoGroup() {\n  const inputMode = ref<InputMode>('paste')\n  const rawText = ref('')\n  const csvData = ref<ParsedCsvData | null>(null)\n  const sampleTypeHints = ref<(string | undefined)[]>([])\n\n  const classes = ref<SampleClass[]>([])\n  const schemas = ref<Record<string, ClassSchema>>({})\n  const activeClassKey = ref<string>('')\n\n  const samples = computed(() => {\n    if (csvData.value) {\n      return csvData.value.rows.map(r => r[csvData.value!.sampleColumn] ?? '')\n    }\n    return rawText.value.split('\\n').map(l => l.trim()).filter(l => l.length > 0)\n  })\n\n  const tokenized = ref<string[][]>([])\n  const delimiter = ref<Delimiter>('_')\n  // Experiment code / date / operator that all pasted names share. Empty for\n  // CSV and experiment input.\n  const experiment = ref<ExperimentHeader>({})\n\n  function parseInput() {\n    if ((inputMode.value === 'csv' || inputMode.value === 'experiment') && csvData.value) {\n      parseInputFromCsv()\n      return\n    }\n    parseInputFromPaste()\n  }\n\n  function parseInputFromCsv() {\n    experiment.value = {}\n    const csv = csvData.value!\n    const nonSampleCols = csv.columns.filter(c => c !== csv.sampleColumn && c !== 'sample_type')\n    if (nonSampleCols.length === 0) {\n      // No metadata columns — degenerate, single Unknown class\n      tokenized.value = csv.rows.map(() => [])\n      classes.value = [{\n        kind: 'unknown',\n        label: 'Unknown',\n        members: csv.rows.map((_, i) => i),\n        classTagPositions: [],\n        disposition: 'group',\n      }]\n      schemas.value = { unknown: { classKind: 'unknown', columns: [], groupBy: [] } }\n      activeClassKey.value = 'unknown'\n      return\n    }\n    const tokens = csv.rows.map(r => nonSampleCols.map(col => r[col] ?? ''))\n    tokenized.value = tokens\n    const structuredClass: SampleClass = {\n      kind: 'unknown',\n      label: 'Unknown',\n      members: csv.rows.map((_, i) => i),\n      classTagPositions: [],\n      disposition: 'group',\n    }\n    classes.value = [structuredClass]\n\n    const schema = buildClassSchema(tokens, 'unknown', undefined, [])\n    schema.columns = schema.columns.map((c, i) => ({\n      ...c,\n      name: nonSampleCols[i] ?? c.name,\n      originalName: nonSampleCols[i],\n    }))\n    // CSV headers are already the user-authored hierarchy. Default to every\n    // metadata column so N CSV columns produce N visible grouping levels.\n    schema.groupBy = schema.columns.map(c => c.index)\n    schemas.value = { unknown: schema }\n    activeClassKey.value = 'unknown'\n  }\n\n  function parseInputFromPaste() {\n    const lines = samples.value\n    if (lines.length === 0) {\n      classes.value = []\n      schemas.value = {}\n      experiment.value = {}\n      return\n    }\n    // One token row for each sample. Replicate tokens, sample numbers and the\n    // injection number stay in the row and get a column role below\n    // ('replicate', 'id', 'run-order'), which keeps them out of the default\n    // group key. Nothing is removed from a name before the user sees it.\n    const batch = tokenizeBatch(lines)\n    delimiter.value = batch.delimiter\n    experiment.value = batch.experiment\n    const tokens = batch.rows\n    // Classify by sample type, THEN split each experimental class by token\n    // length so every member of a class shares the same field count. This\n    // keeps the per-class token matrix rectangular, so column index N means\n    // the same field for every sample.\n    const detected = splitByTokenLength(\n      detectClass(tokens, { sampleTypeHints: sampleTypeHints.value, sharedPrefix: batch.sharedPrefix }),\n      tokens,\n    )\n    const newSchemas: Record<string, ClassSchema> = {}\n    for (const cls of detected) {\n      let memberTokens = cls.members.map(i => tokens[i])\n      let tailPositions: number[] = []\n      const experimental = isExperimentalKind(cls.kind)\n      if (experimental) {\n        // Tokens that hold two fields (`2-1`, `C1`) become two columns.\n        const split = splitColumns(memberTokens)\n        cls.members.forEach((member, row) => { tokens[member] = split.rows[row] })\n        cls.classTagPositions = split.origin.flatMap((source, index) =>\n          cls.classTagPositions.includes(source) ? [index] : [],\n        )\n        memberTokens = split.rows\n        tailPositions = split.tail\n      }\n      const schema = buildClassSchema(\n        memberTokens,\n        cls.kind,\n        cls.subKind,\n        cls.classTagPositions,\n        tailPositions,\n      )\n      // A QC-kind class is one group named by the class label, also when the\n      // user routes it into the groups.\n      if (!experimental) schema.groupBy = []\n      newSchemas[classKey(cls)] = { ...schema, tokenLength: cls.tokenLength }\n    }\n    tokenized.value = tokens\n    classes.value = detected\n    schemas.value = newSchemas\n    if (detected.length > 0) {\n      activeClassKey.value = classKey(detected[0])\n    }\n  }\n\n  const activeSchema = computed<ClassSchema | null>(() => schemas.value[activeClassKey.value] ?? null)\n\n  const suggestions = computed<MergeSuggestion[]>(() => {\n    const schema = activeSchema.value\n    if (!schema) return []\n    const activeClass = classes.value.find(\n      c => classKey(c) === activeClassKey.value,\n    )\n    if (!activeClass) return []\n    const memberTokens = activeClass.members.map(i => tokenized.value[i])\n    return findMerges(schema, memberTokens)\n  })\n\n  function composeWith(withSchemas: Record<string, ClassSchema>): AutoGroupResult {\n    return composeGroups({\n      tokenizedSamples: tokenized.value,\n      sampleNames: samples.value,\n      schemas: withSchemas,\n      classes: classes.value,\n      prefixClassLabels: !(csvData.value && (inputMode.value === 'csv' || inputMode.value === 'experiment')),\n      missingGroupName: csvData.value && (inputMode.value === 'csv' || inputMode.value === 'experiment')\n        ? STRUCTURED_MISSING_GROUP\n        : undefined,\n    })\n  }\n\n  const result = computed<AutoGroupResult>(() => composeWith(schemas.value))\n\n  const fingerprint = computed<SchemaFingerprint>(() =>\n    serializeFingerprint(result.value.schemas ?? []),\n  )\n\n  const groups = computed(() => result.value.groups)\n  const qcGroups = computed(() => result.value.qcGroups ?? [])\n  const metadata = computed(() => result.value.metadata)\n  const excludedSamples = computed(() => result.value.excludedSamples)\n\n  // ----- Mutators -----\n\n  function setClassDisposition(key: string, disposition: ClassDisposition) {\n    const target = classes.value.find(c => classKey(c) === key)\n    if (!target || target.disposition === disposition) return\n    classes.value = classes.value.map(c =>\n      classKey(c) === key ? { ...c, disposition } : c,\n    )\n  }\n\n  function setClassDispositions(\n    predicate: (c: SampleClass) => boolean,\n    disposition: ClassDisposition,\n  ) {\n    let changed = false\n    const next = classes.value.map(c => {\n      if (predicate(c) && c.disposition !== disposition) {\n        changed = true\n        return { ...c, disposition }\n      }\n      return c\n    })\n    if (changed) classes.value = next\n  }\n\n  // `groupBy` is an ORDERED layer list: entry N is hierarchy layer N of the\n  // composed group names (layer 1 = the sample selector's major group). A\n  // column toggled back on therefore appends as the LAST layer rather than\n  // returning to its token position.\n  function toggleGroupBy(key: string, idx: number) {\n    const schema = schemas.value[key]\n    if (!schema) return\n    const groupBy = schema.groupBy.includes(idx)\n      ? schema.groupBy.filter(i => i !== idx)\n      : [...schema.groupBy, idx]\n    schemas.value = {\n      ...schemas.value,\n      [key]: { ...schema, groupBy },\n    }\n  }\n\n  /** Move an enabled column one step up (toward layer 1) or down in the layer order. */\n  function moveGroupBy(key: string, idx: number, direction: 'up' | 'down') {\n    const schema = schemas.value[key]\n    if (!schema) return\n    const from = schema.groupBy.indexOf(idx)\n    if (from === -1) return\n    const to = direction === 'up' ? from - 1 : from + 1\n    if (to < 0 || to >= schema.groupBy.length) return\n    const groupBy = [...schema.groupBy]\n    ;[groupBy[from], groupBy[to]] = [groupBy[to], groupBy[from]]\n    schemas.value = {\n      ...schemas.value,\n      [key]: { ...schema, groupBy },\n    }\n  }\n\n  // The Field Recipe presents ONE set of grouping fields for the whole batch,\n  // but classes each own a schema — so a field edit must reach every class that\n  // exposes that field, or a multi-class batch ends up with divergent layer\n  // orders (half the groups reordered). Fields are matched by display identity\n  // rather than column index, since a class split off by token length can carry\n  // the same field at a different position.\n  function schemasExposing(fieldKey: string): { key: string; index: number }[] {\n    return Object.entries(schemas.value).flatMap(([key, schema]) => {\n      // An overlay class is one group; its columns are not grouping fields.\n      if (!isExperimentalKind(schema.classKind)) return []\n      const col = schema.columns.find(c =>\n        (c.displayName ?? c.name) === fieldKey\n        && (GROUPING_FIELD_ROLES.has(c.role) || schema.groupBy.includes(c.index)),\n      )\n      return col ? [{ key, index: col.index }] : []\n    })\n  }\n\n  function fieldIdentity(schema: ClassSchema, index: number): string | undefined {\n    const column = schema.columns.find(candidate => candidate.index === index)\n    return column ? (column.displayName ?? column.name) : undefined\n  }\n\n  /**\n   * Toggle a grouping field across every class exposing it. The batch card is\n   * on when any schema groups by the field, so clicking it disables all such\n   * schemas; only a fully disabled field is enabled across the batch.\n   */\n  function toggleGroupByField(fieldKey: string) {\n    const targets = schemasExposing(fieldKey)\n    if (targets.length === 0) return\n    const enable = !targets.some(({ key, index }) => schemas.value[key]?.groupBy.includes(index))\n    for (const { key, index } of targets) {\n      const schema = schemas.value[key]\n      if (!schema || schema.groupBy.includes(index) === enable) continue\n      toggleGroupBy(key, index)\n    }\n  }\n\n  /**\n   * Rename a grouping field in every class exposing it. A blank name, or a\n   * name that a column of any experimental class has, changes nothing: the\n   * name is the field's identity across classes, and the cards merge by it.\n   */\n  function renameGroupByField(fieldKey: string, name: string) {\n    const next = name.trim()\n    const targets = schemasExposing(fieldKey)\n    if (!next || next === fieldKey || targets.length === 0) return\n    const taken = Object.values(schemas.value).some(schema =>\n      isExperimentalKind(schema.classKind) && schema.columns.some(c => (c.displayName ?? c.name) === next),\n    )\n    if (taken) return\n    for (const { key, index } of targets) setColumnName(key, index, next)\n  }\n\n  /** Number of experimental groups that remain when the field is switched off in every class. */\n  function groupCountWithout(fieldKey: string): number {\n    const targets = new Map(schemasExposing(fieldKey).map(({ key, index }) => [key, index]))\n    const without = Object.fromEntries(\n      Object.entries(schemas.value).map(([key, schema]) => [\n        key,\n        targets.has(key) ? { ...schema, groupBy: schema.groupBy.filter(i => i !== targets.get(key)) } : schema,\n      ]),\n    )\n    return composeWith(without).experimentalGroups?.length ?? 0\n  }\n\n  /**\n   * Move a grouping field in the active schema, then project that visible field\n   * order across every class. Class-only fields keep their relative order after\n   * the shared fields because the Field Recipe has no card with which to place\n   * them explicitly.\n   */\n  function moveGroupByField(fieldKey: string, direction: 'up' | 'down') {\n    const targets = schemasExposing(fieldKey)\n    if (targets.length === 0) return\n    const active = targets.find(target =>\n      target.key === activeClassKey.value && schemas.value[target.key]?.groupBy.includes(target.index),\n    ) ?? targets.find(target => schemas.value[target.key]?.groupBy.includes(target.index)) ?? targets[0]\n    const activeSchema = schemas.value[active.key]\n    if (!activeSchema) return\n    const from = activeSchema.groupBy.indexOf(active.index)\n    if (from === -1) return\n    const to = direction === 'up' ? from - 1 : from + 1\n    if (to < 0 || to >= activeSchema.groupBy.length) return\n\n    const activeOrder = [...activeSchema.groupBy]\n    ;[activeOrder[from], activeOrder[to]] = [activeOrder[to], activeOrder[from]]\n    const desiredRank = new Map(\n      activeOrder.flatMap((index, rank) => {\n        const identity = fieldIdentity(activeSchema, index)\n        return identity === undefined ? [] : [[identity, rank] as const]\n      }),\n    )\n\n    let changed = false\n    const nextSchemas = { ...schemas.value }\n    for (const [key, schema] of Object.entries(schemas.value)) {\n      const shared: Array<{ index: number; rank: number }> = []\n      const classOnly: number[] = []\n      for (const index of schema.groupBy) {\n        const identity = fieldIdentity(schema, index)\n        const rank = identity === undefined ? undefined : desiredRank.get(identity)\n        if (rank === undefined) classOnly.push(index)\n        else shared.push({ index, rank })\n      }\n      shared.sort((left, right) => left.rank - right.rank)\n      const groupBy = [...shared.map(entry => entry.index), ...classOnly]\n      if (groupBy.every((index, position) => index === schema.groupBy[position])) continue\n      nextSchemas[key] = { ...schema, groupBy }\n      changed = true\n    }\n    if (changed) schemas.value = nextSchemas\n  }\n\n  function updateColumn(key: string, idx: number, patch: Partial<ColumnInfo>) {\n    const schema = schemas.value[key]\n    if (!schema) return\n    const col = schema.columns.find(c => c.index === idx)\n    if (!col) return\n    let changed = false\n    for (const k of Object.keys(patch) as (keyof ColumnInfo)[]) {\n      if ((col as unknown as Record<string, unknown>)[k as string] !== (patch as unknown as Record<string, unknown>)[k as string]) {\n        changed = true\n        break\n      }\n    }\n    if (!changed) return\n    schemas.value = {\n      ...schemas.value,\n      [key]: {\n        ...schema,\n        columns: schema.columns.map(c => (c.index === idx ? { ...c, ...patch } : c)),\n      },\n    }\n  }\n\n  function setRole(key: string, idx: number, role: ColumnRole) {\n    updateColumn(key, idx, { role })\n  }\n\n  function setColumnName(key: string, idx: number, name: string) {\n    updateColumn(key, idx, { displayName: name })\n  }\n\n  function setValueOps(key: string, idx: number, ops: ValueOps) {\n    updateColumn(key, idx, { ops })\n  }\n\n  function setBinning(key: string, idx: number, binning: NumericBinning) {\n    updateColumn(key, idx, { binning })\n  }\n\n  function mergeColumns(key: string, indices: number[]) {\n    const schema = schemas.value[key]\n    if (!schema || indices.length < 2) return\n    const sorted = [...indices].sort((a, b) => a - b)\n    const start = sorted[0]\n    const merged: ColumnInfo = {\n      index: start,\n      name: `Column ${sorted.map(i => i + 1).join('–')}`,\n      sourceIndices: sorted.flatMap(i => schema.columns.find(c => c.index === i)?.sourceIndices ?? [i]),\n      uniqueValues: [],\n      cardinality: 0,\n      role: 'factor',\n    }\n    const dropped = new Set(sorted)\n    schemas.value = {\n      ...schemas.value,\n      [key]: {\n        ...schema,\n        columns: [merged, ...schema.columns.filter(c => !dropped.has(c.index))]\n          .sort((a, b) => a.index - b.index),\n        groupBy: schema.groupBy.filter(i => !dropped.has(i) || i === start),\n      },\n    }\n  }\n\n  function loadFingerprint(fp: SchemaFingerprint) {\n    const restored = restoreFingerprint(fp, Object.values(schemas.value))\n    const next: Record<string, ClassSchema> = {}\n    for (const s of restored) {\n      next[classKey({ kind: s.classKind, subKind: s.subKind, tokenLength: s.tokenLength })] = s\n    }\n    schemas.value = next\n  }\n\n  // ----- Template download -----\n\n  const canDownloadTemplate = computed(() => samples.value.length > 0)\n\n  function downloadTemplate(mode: 'blank' | 'prefilled' = 'prefilled', format: 'csv' | 'tsv' = 'csv') {\n    const { content, filename } = composeTemplate(\n      samples.value,\n      mode === 'prefilled' ? Object.values(schemas.value) : null,\n      mode === 'prefilled' ? classes.value : null,\n      { mode, format, tokenizedSamples: tokenized.value },\n    )\n    const blob = new Blob([content], { type: format === 'tsv' ? 'text/tab-separated-values' : 'text/csv' })\n    const url = URL.createObjectURL(blob)\n    const a = document.createElement('a')\n    a.href = url\n    a.download = filename\n    document.body.appendChild(a)\n    a.click()\n    document.body.removeChild(a)\n    URL.revokeObjectURL(url)\n  }\n\n  /** Test seam — exposes the template content/filename without triggering a browser download. */\n  function composeTemplateForTest(opts: Pick<TemplateOptions, 'mode' | 'format'>) {\n    return composeTemplate(\n      samples.value,\n      opts.mode === 'prefilled' ? Object.values(schemas.value) : null,\n      opts.mode === 'prefilled' ? classes.value : null,\n      { ...opts, tokenizedSamples: tokenized.value },\n    )\n  }\n\n  // ----- Legacy public refs and shims -----\n\n  const outliers = ref<OutlierInfo[]>([])\n  const hasOutliers = computed(() => outliers.value.length > 0)\n  const conformingSamples = computed(() => samples.value)\n  const dominantFieldCount = computed(() => tokenized.value[0]?.length ?? 0)\n  const minFieldCount = computed(() => {\n    if (tokenized.value.length === 0) return 0\n    return Math.min(...tokenized.value.map(t => t.length))\n  })\n  const fields = computed(() => activeSchema.value?.columns ?? [])\n  const fieldNames = computed<Record<number, string>>(() => {\n    const out: Record<number, string> = {}\n    for (const c of fields.value) out[c.index] = c.displayName ?? c.name\n    return out\n  })\n  const enabledFields = computed<Set<number>>(() =>\n    activeSchema.value ? new Set(activeSchema.value.groupBy) : new Set(),\n  )\n  const effectiveColumns = fields\n  const allSingletons = computed(\n    () => groups.value.length > 1 && groups.value.every(g => g.samples.length === 1),\n  )\n\n  function loadExperimentData(\n    rawData: Record<string, unknown>,\n    options: LoadExperimentDataOptions = {},\n  ): boolean {\n    const parsed = extractSamplesFromDesignData(rawData, options)\n    if (!parsed) return false\n    inputMode.value = 'experiment'\n    csvData.value = parsed\n    sampleTypeHints.value = parsed.sampleTypeHints\n    parseInput()\n    return true\n  }\n\n  function reset() {\n    rawText.value = ''\n    csvData.value = null\n    classes.value = []\n    schemas.value = {}\n    activeClassKey.value = ''\n    tokenized.value = []\n    experiment.value = {}\n    outliers.value = []\n    sampleTypeHints.value = []\n  }\n\n  return {\n    // State\n    inputMode, rawText, csvData, sampleTypeHints,\n    classes, schemas, activeClassKey,\n    delimiter, experiment, dominantFieldCount, minFieldCount,\n    // Computed\n    samples, tokenized, activeSchema, suggestions,\n    groups, qcGroups, metadata, excludedSamples, result, fingerprint,\n    fields, fieldNames, enabledFields, effectiveColumns,\n    hasOutliers, outliers, conformingSamples, allSingletons,\n    canDownloadTemplate,\n    // Mutators\n    setClassDisposition, setClassDispositions, toggleGroupBy, moveGroupBy,\n    toggleGroupByField, moveGroupByField, renameGroupByField, groupCountWithout,\n    setRole, setColumnName, setValueOps, setBinning,\n    mergeColumns, loadFingerprint,\n    // Actions\n    parseInput, downloadTemplate, composeTemplateForTest, loadExperimentData, reset,\n  }\n}\n\n/**\n * Reads experiment `design_data` samples into the `useAutoGroup` CSV shape.\n */\nexport function extractSamplesFromDesignData(\n  rawData: Record<string, unknown>,\n  options: LoadExperimentDataOptions = {},\n): ParsedExperimentCsvData | null {\n  const designData = unwrapExperimentDesignData(rawData)\n  if (!designData) return null\n  const samples = designData.samples\n  if (!Array.isArray(samples) || samples.length === 0) return null\n  const allConditionKeys: string[] = []\n  const keySet = new Set<string>()\n  const sampleTypeHints: (string | undefined)[] = []\n  for (const sample of samples) {\n    const rawType = (sample as Record<string, unknown>).sample_type\n    sampleTypeHints.push(typeof rawType === 'string' ? rawType.toLowerCase() : undefined)\n    const conditions = (sample as Record<string, unknown>).conditions as Record<string, string> | undefined\n    if (conditions && typeof conditions === 'object') {\n      for (const key of Object.keys(conditions)) {\n        if (!keySet.has(key)) {\n          keySet.add(key)\n          allConditionKeys.push(key)\n        }\n      }\n    }\n  }\n  if (allConditionKeys.length === 0) return null\n  const columns = ['sample_name', ...allConditionKeys, 'sample_type']\n  const rows = (samples as Record<string, unknown>[]).map(s => {\n    const conditions = (s.conditions as Record<string, string>) ?? {}\n    const row: Record<string, string> = {\n      sample_name: String(s.sample_name ?? ''),\n      sample_type: String(s.sample_type ?? 'sample'),\n    }\n    for (const key of allConditionKeys) row[key] = conditions[key] ?? ''\n    return row\n  })\n  return constrainParsedSamplesToInput(\n    { columns, rows, sampleColumn: 'sample_name', delimiter: ',', sampleTypeHints },\n    options.samples,\n  )\n}\n\nfunction constrainParsedSamplesToInput(\n  parsed: ParsedExperimentCsvData,\n  samples: readonly string[] | undefined,\n): ParsedExperimentCsvData {\n  const requested = samples\n    ?.map(sample => sample.trim())\n    .filter(sample => sample.length > 0)\n  if (!requested || requested.length === 0) return parsed\n\n  const rowBySample = new Map<string, { row: Record<string, string>; hint: string | undefined }>()\n  parsed.rows.forEach((row, index) => {\n    const sample = row[parsed.sampleColumn]\n    if (sample && !rowBySample.has(sample)) {\n      rowBySample.set(sample, { row, hint: parsed.sampleTypeHints[index] })\n    }\n  })\n\n  const metadataColumns = parsed.columns.filter(\n    column => column !== parsed.sampleColumn && column !== 'sample_type',\n  )\n  const rows: Record<string, string>[] = []\n  const sampleTypeHints: (string | undefined)[] = []\n\n  for (const sample of requested) {\n    const match = rowBySample.get(sample)\n    if (match) {\n      rows.push(match.row)\n      sampleTypeHints.push(match.hint)\n      continue\n    }\n\n    const outlierRow: Record<string, string> = {\n      [parsed.sampleColumn]: sample,\n      sample_type: 'sample',\n    }\n    for (const column of metadataColumns) outlierRow[column] = ''\n    rows.push(outlierRow)\n    sampleTypeHints.push(undefined)\n  }\n\n  return { ...parsed, rows, sampleTypeHints }\n}\n","/**\n * Pure adapters mapping the `useAutoGroup` engine state to the controlled\n * Smart Group UI (`SmartGroupFieldRecipe` / `SmartGroupManual`) and back to an\n * `AutoGroupResult`. Framework-free so the mapping is unit-testable in isolation\n * from `AutoGroupModalInternal.vue`.\n */\nimport type { AutoGroupResult, ClassSchema, ColumnInfo, ColumnRole, SampleClass } from '../../types/auto-group'\nimport type { SampleGroup } from '../../types'\nimport type { FieldRecipeGroup, QcRoute, SmartGroupField } from '../SmartGroupFieldRecipe.groups'\nimport type { ManualSample } from '../SmartGroupManual.cohorts'\nimport type { FieldRecipeAnatomyToken, FieldRecipeQcChip, SmartGroupSeed } from '../SmartGroup.types'\nimport { GROUPING_FIELD_ROLES, classKey, isExperimentalKind } from './autoGroup'\nimport type { ExperimentHeader } from './autoGroup'\n\nconst PREVIEW_VALUES = 3\n\n/** Value preview of a field card: the first three values, then the count of the rest. */\nexport function previewValues(values: string[]): string {\n  const shown = values.slice(0, PREVIEW_VALUES).join(', ')\n  return values.length > PREVIEW_VALUES ? `${shown} … +${values.length - PREVIEW_VALUES}` : shown\n}\n\n/** Experiment line of the modal header: `exp157 · 2025-10-13 · LT`. */\nexport function experimentLabel(header: ExperimentHeader): string {\n  return [header.code, header.date, header.operator].filter(Boolean).join(' · ')\n}\n\n/**\n * Names of all columns of the experimental classes. A field cannot take one\n * of them: the engine merges fields by name.\n */\nexport function engineColumnNames(schemas: Record<string, ClassSchema>): string[] {\n  const names = Object.values(schemas)\n    .filter(schema => isExperimentalKind(schema.classKind))\n    .flatMap(schema => schema.columns.map(column => column.displayName ?? column.name))\n  return [...new Set(names)]\n}\n\n/** One chip for each QC-type class, with its sample count. */\nexport function engineQcChips(classes: SampleClass[]): FieldRecipeQcChip[] {\n  return classes\n    .filter(c => !isExperimentalKind(c.kind))\n    .map(c => ({ name: c.label, count: c.members.length }))\n}\n\n/**\n * The tokens of one study sample with the role the engine gave each of them,\n * so the user sees how the names were read. The sample is the first member of\n * the largest experimental class. `cards` supplies the on/off state and the\n * layer of the tokens that are grouping fields.\n */\nexport function engineAnatomy(\n  classes: SampleClass[],\n  schemas: Record<string, ClassSchema>,\n  tokenized: string[][],\n  cards: { fields: SmartGroupField[]; layers: (number | null)[] },\n): FieldRecipeAnatomyToken[] {\n  const cls = classes\n    .filter(c => isExperimentalKind(c.kind) && schemas[classKey(c)])\n    .sort((a, b) => b.members.length - a.members.length)[0]\n  if (!cls) return []\n  const tokens = tokenized[cls.members[0]] ?? []\n  return schemas[classKey(cls)].columns.flatMap((column): FieldRecipeAnatomyToken[] => {\n    const text = column.sourceIndices.map(index => tokens[index] ?? '').join('_')\n    if (!text) return []\n    const name = column.displayName ?? column.name\n    const card = cards.fields.findIndex(field => field.key === name)\n    if (card === -1) {\n      // A token that is not a field shows an inferred name only when the\n      // name says something (Date, Injection #); `Username` or `Matrix 2` on a\n      // constant token does not.\n      const caption = /^(Field \\d+|Username.*|.* \\d+)$/.test(name) ? roleLabel(column.role).toLowerCase() : name\n      return [{ text, caption, state: 'fixed' }]\n    }\n    const layer = cards.layers[card]\n    return [layer === null ? { text, caption: name, state: 'off' } : { text, caption: String(layer), state: 'on' }]\n  })\n}\n\nconst ROLE_LABELS: Record<ColumnRole, string> = {\n  'constant': 'Constant',\n  'factor': 'Factor',\n  'replicate': 'Replicate',\n  'run-order': 'Run',\n  'id': 'Sample ID',\n  'numeric': 'Numeric',\n  'class-tag': 'Class tag',\n  'ignore': 'Ignore',\n}\n\n/** Human label for a column role; defaults to `Factor` when unset. */\nexport function roleLabel(role?: ColumnRole): string {\n  return role ? ROLE_LABELS[role] : 'Factor'\n}\n\n/**\n * Columns worth offering as grouping toggles: factors, numerics, replicates and\n * sample IDs (the last two are off by default), plus any column already enabled\n * in `groupBy` (so a manual group-by choice still shows).\n * Preserves the engine's column order. `groupBy` is the schema's ORDERED layer\n * list — entry N is hierarchy layer N of the composed group names.\n */\nexport function candidateColumns(columns: ColumnInfo[], groupBy: readonly number[]): ColumnInfo[] {\n  const enabled = new Set(groupBy)\n  return columns.filter(c => GROUPING_FIELD_ROLES.has(c.role) || enabled.has(c.index))\n}\n\n/**\n * Map engine columns to Field Recipe cards + their on/off state (same order).\n * `layers` aligns with the cards: the column's 1-based position in the\n * `groupBy` layer order, or `null` when the column is not grouped by.\n */\nexport function engineFieldsToCards(\n  columns: ColumnInfo[],\n  groupBy: readonly number[],\n): { fields: SmartGroupField[]; enabled: boolean[]; layers: (number | null)[] } {\n  const candidates = candidateColumns(columns, groupBy)\n  return {\n    fields: candidates.map(c => ({\n      key: c.displayName ?? c.name,\n      role: roleLabel(c.role),\n      vals: previewValues(c.uniqueValues),\n      rep: c.role === 'replicate' || c.role === 'id',\n    })),\n    enabled: candidates.map(c => groupBy.includes(c.index)),\n    layers: candidates.map(c => {\n      const pos = groupBy.indexOf(c.index)\n      return pos === -1 ? null : pos + 1\n    }),\n  }\n}\n\n/**\n * Build the batch-wide field recipe from every class schema. The active schema\n * stays first for a stable card order; fields and enabled hierarchy layers that\n * only exist in another token-length/class split are appended instead of being\n * hidden from the controlled UI.\n */\nexport function engineSchemasToCards(\n  schemas: Record<string, ClassSchema>,\n  activeClassKey: string,\n): { fields: SmartGroupField[]; enabled: boolean[]; layers: (number | null)[] } {\n  const entries = Object.entries(schemas)\n  const active = entries.find(([key]) => key === activeClassKey)\n  const ordered = active\n    ? [active, ...entries.filter(([key]) => key !== activeClassKey)]\n    : entries\n  const candidates = new Map<string, ColumnInfo>()\n  const enabledOrder: string[] = []\n  const enabled = new Set<string>()\n\n  for (const [, schema] of ordered) {\n    // An overlay class (QC, blank, standard) is one group; its columns are not fields.\n    if (!isExperimentalKind(schema.classKind)) continue\n    for (const index of schema.groupBy) {\n      const column = schema.columns.find(candidate => candidate.index === index)\n      if (!column) continue\n      const identity = column.displayName ?? column.name\n      if (!enabled.has(identity)) {\n        enabled.add(identity)\n        enabledOrder.push(identity)\n      }\n    }\n    for (const column of candidateColumns(schema.columns, schema.groupBy)) {\n      const identity = column.displayName ?? column.name\n      if (!candidates.has(identity)) candidates.set(identity, column)\n    }\n  }\n\n  const cards = [...candidates.entries()]\n  return {\n    fields: cards.map(([key, column]) => ({\n      key,\n      role: roleLabel(column.role),\n      vals: previewValues(column.uniqueValues),\n      rep: column.role === 'replicate' || column.role === 'id',\n    })),\n    enabled: cards.map(([key]) => enabled.has(key)),\n    layers: cards.map(([key]) => {\n      const position = enabledOrder.indexOf(key)\n      return position === -1 ? null : position + 1\n    }),\n  }\n}\n\n/** Map engine sample groups to the live preview rail shape. */\nexport function engineGroupsToRail(groups: SampleGroup[]): FieldRecipeGroup[] {\n  return groups.map(g => ({ name: g.name, count: g.samples.length, color: g.color }))\n}\n\nconst ROUTE_TO_ENGINE: Record<QcRoute, 'overlay' | 'exclude' | 'mix'> = {\n  'Overlay only': 'overlay',\n  'Exclude': 'exclude',\n  'Mix into groups': 'mix',\n}\nconst ENGINE_TO_ROUTE: Record<'overlay' | 'exclude' | 'mix', QcRoute> = {\n  overlay: 'Overlay only',\n  exclude: 'Exclude',\n  mix: 'Mix into groups',\n}\n\n/** Map the Field Recipe QC label to the engine's class disposition routing. */\nexport function qcRouteToEngine(route: QcRoute): 'overlay' | 'exclude' | 'mix' {\n  return ROUTE_TO_ENGINE[route]\n}\n\n/** Map the engine's QC routing back to the Field Recipe label. */\nexport function engineToQcRoute(routing: 'overlay' | 'exclude' | 'mix'): QcRoute {\n  return ENGINE_TO_ROUTE[routing]\n}\n\n/**\n * Seed the manual cohort builder from existing groups. The hierarchical group\n * name (`group/sub/sub2`) splits into the three cohort levels; colour carries\n * over. One seed entry per sample. Names with more than three `/`-segments keep\n * the remainder in `sub2` (rejoined with `/`) so the round-trip is lossless —\n * `manualSamplesToResult` re-joins on `/`.\n */\nexport function seedFromGroups(groups: SampleGroup[]): Record<string, SmartGroupSeed> {\n  const seed: Record<string, SmartGroupSeed> = {}\n  for (const group of groups) {\n    const parts = group.name.split('/')\n    const grp = parts[0]\n    const sub = parts[1]\n    const sub2 = parts.length > 3 ? parts.slice(2).join('/') : parts[2]\n    for (const sample of group.samples) {\n      seed[sample] = {\n        group: grp,\n        sub: sub || undefined,\n        sub2: sub2 || undefined,\n        color: group.color,\n      }\n    }\n  }\n  return seed\n}\n\n/**\n * Convert the manual cohort assignments back into an `AutoGroupResult`.\n * `baseGroups` (the modal's incoming `groups` prop) are preserved in their\n * original order and colour — including any that end up empty — so re-opening\n * the modal and moving samples between cohorts is non-destructive. Newly created\n * cohorts are appended in first-seen order.\n */\nexport function manualSamplesToResult(\n  samples: ManualSample[],\n  baseGroups: SampleGroup[] = [],\n): AutoGroupResult {\n  const assigned = new Map<string, { color: string; samples: string[] }>()\n  const order: string[] = []\n  for (const sample of samples) {\n    if (!sample.group) continue\n    const name = [sample.group, sample.sub, sample.sub2].filter(Boolean).join('/')\n    if (!assigned.has(name)) {\n      assigned.set(name, { color: sample.color ?? '', samples: [] })\n      order.push(name)\n    }\n    assigned.get(name)!.samples.push(sample.name)\n  }\n\n  const groups: SampleGroup[] = []\n  const consumed = new Set<string>()\n  for (const base of baseGroups) {\n    consumed.add(base.name)\n    groups.push({ name: base.name, color: base.color, samples: assigned.get(base.name)?.samples ?? [] })\n  }\n  for (const name of order) {\n    if (consumed.has(name)) continue\n    const entry = assigned.get(name)!\n    groups.push({ name, color: entry.color, samples: entry.samples })\n  }\n\n  return { groups, experimentalGroups: groups, qcGroups: [], metadata: [], excludedSamples: [] }\n}\n","import { DEFAULT_COLORS } from './internal/autoGroup/colors'\nimport type { SampleGroup } from '../types'\n\nexport type ColorEdit =\n  | { kind: 'single'; name: string }\n  | { kind: 'family'; names: string[] }\n\nexport const DEFAULT_COLOR_PICKER_SEED = '#3B82F6'\nexport const SAMPLE_GROUP_COLOR_OPTIONS = DEFAULT_COLORS.slice(0, 5)\n\nexport function applySampleGroupColorEdit(\n  groups: SampleGroup[],\n  edit: ColorEdit,\n  color: string,\n): SampleGroup[] {\n  const targets = edit.kind === 'family' ? new Set(edit.names) : new Set([edit.name])\n  return groups.map(group =>\n    targets.has(group.name) ? { ...group, color } : group,\n  )\n}\n\nexport function getSampleGroupColorEditSeed(\n  edit: ColorEdit | null,\n  getGroupColor: (groupName: string) => string,\n): string {\n  if (!edit) return DEFAULT_COLOR_PICKER_SEED\n  return getGroupColor(edit.kind === 'family' ? edit.names[0] : edit.name)\n}\n\nexport function pickUnusedSampleGroupColor(groups: SampleGroup[]): string {\n  const usedColors = new Set(groups.map(group => group.color))\n  return DEFAULT_COLORS.find(color => !usedColors.has(color)) || DEFAULT_COLORS[0]\n}\n\nexport function createSampleGroup(\n  name: string,\n  existingGroups: SampleGroup[],\n  color?: string,\n): SampleGroup | null {\n  const trimmedName = name.trim()\n  if (!trimmedName) return null\n\n  return {\n    name: trimmedName,\n    color: color || pickUnusedSampleGroupColor(existingGroups),\n    samples: [],\n  }\n}\n","<script setup lang=\"ts\">\n/**\n * Smart Group modal. Parses sample naming patterns into candidate grouping\n * fields (auto / \"Field Recipe\") or lets you assign cohorts by hand (manual),\n * staying wired to the `useAutoGroup` engine. The UI is the Smart Group design\n * (`SmartGroupFieldRecipe` / `SmartGroupManual`) driven in controlled mode; this\n * component is the adapter that maps engine state ↔ that UI and emits the\n * resulting `AutoGroupResult`. Private to `SampleSelector`, which emits that\n * result as its `smartGroup` event.\n */\nimport { ref, computed, watch } from 'vue'\nimport BaseModal from '../BaseModal.vue'\nimport AlertBox from '../AlertBox.vue'\nimport SmartGroupFieldRecipe from '../SmartGroupFieldRecipe.vue'\nimport SmartGroupManual from '../SmartGroupManual.vue'\nimport { useAutoGroup, parseCSV } from './useAutoGroup'\nimport { useApi } from '../../composables/useApi'\nimport { readFileAsText } from '../../composables/useFileImport'\nimport {\n  engineAnatomy,\n  engineColumnNames,\n  engineGroupsToRail,\n  engineQcChips,\n  engineSchemasToCards,\n  engineToQcRoute,\n  experimentLabel,\n  manualSamplesToResult,\n  qcRouteToEngine,\n  seedFromGroups,\n} from './AutoGroupModalInternal.adapter'\nimport { SAMPLE_GROUP_COLOR_OPTIONS } from '../SampleSelector.colors'\nimport { mostlySingletons, type QcRoute } from '../SmartGroupFieldRecipe.groups'\nimport type { ManualSample } from '../SmartGroupManual.cohorts'\nimport type { ManualPaletteEntry } from '../SmartGroup.types'\nimport type { AutoGroupResult } from '../../types/auto-group'\nimport type { SampleGroup } from '../../types'\n\ntype GroupingWorkflow = 'auto' | 'manual'\n\nexport interface Props {\n  open: boolean\n  samples?: string[]\n  groups?: SampleGroup[]\n  initialMode?: GroupingWorkflow\n  experimentId?: number\n  /** Pre-fetched design data — bypasses API fetch when provided */\n  designData?: Record<string, unknown>\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  samples: () => [],\n  groups: () => [],\n  initialMode: 'auto',\n  experimentId: undefined,\n  designData: undefined,\n})\n\nconst emit = defineEmits<{\n  'update:open': [value: boolean]\n  'apply': [result: AutoGroupResult]\n}>()\n\nconst autoGroup = useAutoGroup()\nconst api = useApi()\nconst activeWorkflow = ref<GroupingWorkflow>(props.initialMode)\nconst experimentError = ref<string | null>(null)\nconst experimentLoading = ref(false)\n\n// QC routing — a 3-way state stored as two booleans so downstream engine\n// dispositions stay stable; the UI presents it as overlay / exclude / mix.\nconst qcAsOverlay = ref(true)\nconst excludeQc = ref(false)\ntype QcRouting = 'overlay' | 'exclude' | 'mix'\nconst qcRouting = computed<QcRouting>(() => {\n  if (excludeQc.value) return 'exclude'\n  if (qcAsOverlay.value) return 'overlay'\n  return 'mix'\n})\nfunction setQcRouting(value: QcRouting) {\n  qcAsOverlay.value = value === 'overlay'\n  excludeQc.value = value === 'exclude'\n  autoGroup.setClassDispositions(\n    c => c.kind !== 'biological' && c.kind !== 'unknown',\n    value === 'exclude' ? 'exclude' : value === 'overlay' ? 'overlay' : 'group',\n  )\n}\n\n// ── Auto mode (Field Recipe) ─────────────────────────────────────────\n// The recipe represents the whole batch, including fields that only exist in\n// another class or token-length schema split.\nconst fieldCards = computed(() =>\n  engineSchemasToCards(autoGroup.schemas.value, autoGroup.activeClassKey.value),\n)\nconst railGroups = computed(() =>\n  engineGroupsToRail(autoGroup.result.value.experimentalGroups ?? autoGroup.groups.value),\n)\nconst qcSampleCount = computed(() =>\n  autoGroup.classes.value\n    .filter(c => c.kind !== 'biological' && c.kind !== 'unknown')\n    .reduce((acc, c) => acc + c.members.length, 0),\n)\nconst qcChips = computed(() => (qcRouting.value === 'mix' ? [] : engineQcChips(autoGroup.classes.value)))\nconst fieldRecipeRoute = computed<QcRoute>(() => engineToQcRoute(qcRouting.value))\nconst headerCount = computed(() => autoGroup.samples.value.length)\nconst headerLabel = computed(() => experimentLabel(autoGroup.experiment.value))\nconst reservedNames = computed(() => engineColumnNames(autoGroup.schemas.value))\n// The example name is shown for pasted names only: CSV and experiment input\n// have columns, not name tokens.\nconst anatomy = computed(() =>\n  autoGroup.inputMode.value === 'paste'\n    ? engineAnatomy(autoGroup.classes.value, autoGroup.schemas.value, autoGroup.tokenized.value, fieldCards.value)\n    : [],\n)\n// A design with no replicate in the names gives groups of one sample. Each\n// field that is on then shows how many groups remain when the user switches\n// it off, so the user can find the field that is not part of the condition.\n// The rule is the one of the summary callout, so the two show together.\nconst fieldHints = computed(() => {\n  const needsHelp = mostlySingletons(railGroups.value)\n  // ponytail: one full composeGroups for each field that is on (a few ms for\n  // 200 samples). Count distinct group keys instead if a large batch is slow.\n  return fieldCards.value.fields.map((field, index) => {\n    if (!needsHelp || !fieldCards.value.enabled[index]) return null\n    const remaining = autoGroup.groupCountWithout(field.key)\n    return `off → ${remaining} ${remaining === 1 ? 'group' : 'groups'}`\n  })\n})\n\n// The cards describe the batch, not one class, so edits fan out to every class\n// exposing the field — otherwise a multi-class batch (e.g. a Liver class and a\n// Kidney class) ends up with only half its groups reordered.\nfunction onToggleField(cardIndex: number) {\n  const field = fieldCards.value.fields[cardIndex]\n  if (!field) return\n  autoGroup.toggleGroupByField(field.key)\n}\nfunction onMoveField(cardIndex: number, direction: 'up' | 'down') {\n  const field = fieldCards.value.fields[cardIndex]\n  if (!field) return\n  autoGroup.moveGroupByField(field.key, direction)\n}\nfunction onRenameField(cardIndex: number, name: string) {\n  const field = fieldCards.value.fields[cardIndex]\n  if (!field) return\n  autoGroup.renameGroupByField(field.key, name)\n}\nfunction onRouteChange(route: QcRoute) {\n  setQcRouting(qcRouteToEngine(route))\n}\nfunction applyAuto() {\n  emit('apply', autoGroup.result.value)\n  close()\n}\n\n// CSV upload from the Field Recipe header: parse the file into the engine's CSV\n// path. `samples` derives reactively from csvData and `parseInput()` builds the\n// classes/fields/groups; re-apply the current QC routing like the open watcher.\nasync function onCsvFile(file: File) {\n  experimentError.value = null\n  try {\n    // Parse BEFORE mutating engine state so a malformed/empty/header-only CSV\n    // (parseCSV throws) leaves the engine untouched instead of half-set.\n    const text = await readFileAsText(file)\n    const parsed = parseCSV(text)\n    autoGroup.csvData.value = parsed\n    autoGroup.inputMode.value = 'csv'\n    autoGroup.parseInput()\n    setQcRouting(qcRouting.value)\n  } catch (e) {\n    experimentError.value = e instanceof Error ? e.message : 'Could not read that CSV file.'\n  }\n}\n\n// Template downloads via the engine. `downloadTemplate(mode, format)` defaults to\n// ('prefilled', 'csv'); pass the explicit mode for each menu action.\nfunction onDownloadTemplate() {\n  autoGroup.downloadTemplate('blank', 'csv')\n}\nfunction onDownloadPrefilled() {\n  autoGroup.downloadTemplate('prefilled', 'csv')\n}\n\n// ── Manual mode ──────────────────────────────────────────────────────\n// Hex swatches (the SDK's existing manual palette) rather than SmartGroupManual's\n// var(--mint-sample-1) … token story default: SampleSelector tints group colours via hex8 string\n// concatenation (`group.color + '20'`), so an emitted cohort colour must be a\n// concrete hex value — matching the colours the previous manual modal produced.\nconst MANUAL_SWATCH_LABELS = ['Blue', 'Green', 'Amber', 'Red', 'Violet']\nconst manualPalette: ManualPaletteEntry[] = SAMPLE_GROUP_COLOR_OPTIONS.map((c, i) => ({\n  c,\n  k: MANUAL_SWATCH_LABELS[i] ?? c,\n}))\n// Source from the engine once input is parsed (paste of props.samples, an\n// experiment fetch, OR an uploaded CSV) so CSV-loaded samples reach manual mode\n// too; fall back to the raw prop before the engine has parsed anything.\nconst manualSampleNames = computed(() =>\n  autoGroup.samples.value.length > 0 ? autoGroup.samples.value : props.samples,\n)\nconst manualSeed = computed(() => seedFromGroups(props.groups))\n// Remount the manual builder when the sample set changes so it re-seeds from\n// freshly-loaded experiment data rather than a stale snapshot.\nconst manualKey = computed(() => manualSampleNames.value.join('\\n'))\nfunction applyManual(payload: { samples: ManualSample[] }) {\n  emit('apply', manualSamplesToResult(payload.samples, props.groups))\n  close()\n}\n\nfunction close() {\n  emit('update:open', false)\n}\n\n// A close or a newer fetch makes the response of an earlier fetch obsolete.\nlet fetchGeneration = 0\n\nasync function fetchExperimentData() {\n  if (!props.experimentId && !props.designData) return\n  const generation = ++fetchGeneration\n  autoGroup.inputMode.value = 'experiment'\n  experimentError.value = null\n  experimentLoading.value = true\n  try {\n    let pluginData: Record<string, unknown> | undefined\n    if (props.designData) {\n      pluginData = props.designData\n    } else {\n      const result = await api.get<Record<string, unknown>>(`/experiments/${props.experimentId}/data`)\n      pluginData = result.data as Record<string, unknown> | undefined\n      if (generation !== fetchGeneration) return\n    }\n    if (!pluginData || typeof pluginData !== 'object') {\n      experimentError.value = 'No design data found for this experiment'\n      return\n    }\n    if (!autoGroup.loadExperimentData(pluginData, { samples: props.samples })) {\n      experimentError.value = 'No sample metadata found in this experiment'\n      return\n    }\n    setQcRouting(qcRouting.value)\n  } catch (e) {\n    if (generation === fetchGeneration) {\n      experimentError.value = e instanceof Error ? e.message : 'Failed to fetch experiment data'\n    }\n  } finally {\n    if (generation === fetchGeneration) experimentLoading.value = false\n  }\n}\n\n// Populate the engine from props when the modal opens. Sample ingestion still\n// comes from the `samples` / `designData` / `experimentId` props exactly as\n// before — the redesign just drops the multi-step input/schema/merge UI.\nwatch(\n  () => props.open,\n  (open) => {\n    if (!open) {\n      fetchGeneration += 1\n      experimentLoading.value = false\n      return\n    }\n    activeWorkflow.value = props.initialMode\n    experimentError.value = null\n    qcAsOverlay.value = true\n    excludeQc.value = false\n    autoGroup.reset()\n    if (props.experimentId || props.designData) {\n      fetchExperimentData()\n    } else if (props.samples.length > 0) {\n      autoGroup.rawText.value = props.samples.join('\\n')\n      autoGroup.inputMode.value = 'paste'\n      autoGroup.parseInput()\n      setQcRouting(qcRouting.value)\n    } else {\n      autoGroup.inputMode.value = 'paste'\n    }\n  },\n  { immediate: true },\n)\n</script>\n\n<template>\n  <BaseModal\n    class=\"sg-host\"\n    :open=\"open\"\n    :closable=\"false\"\n    :close-on-overlay=\"false\"\n    :close-on-escape=\"false\"\n    size=\"lg\"\n    @update:open=\"emit('update:open', $event)\"\n  >\n    <AlertBox v-if=\"experimentError\" tone=\"error\" class=\"sg-host__error\">\n      {{ experimentError }}\n    </AlertBox>\n\n    <SmartGroupFieldRecipe\n      v-if=\"activeWorkflow === 'auto'\"\n      :fields=\"fieldCards.fields\"\n      :enabled=\"fieldCards.enabled\"\n      :layers=\"fieldCards.layers\"\n      :groups=\"railGroups\"\n      :qc-chips=\"qcChips\"\n      :route=\"fieldRecipeRoute\"\n      :header-count=\"headerCount\"\n      :qc-count=\"qcSampleCount\"\n      :can-download-template=\"autoGroup.canDownloadTemplate.value\"\n      :loading=\"experimentLoading\"\n      :experiment-label=\"headerLabel\"\n      :anatomy=\"anatomy\"\n      :hints=\"fieldHints\"\n      :reserved-names=\"reservedNames\"\n      renamable\n      @toggle=\"onToggleField\"\n      @move=\"onMoveField\"\n      @rename=\"onRenameField\"\n      @update:route=\"onRouteChange\"\n      @csv-file=\"onCsvFile\"\n      @download-template=\"onDownloadTemplate\"\n      @download-prefilled=\"onDownloadPrefilled\"\n      @apply=\"applyAuto\"\n      @manual=\"activeWorkflow = 'manual'\"\n      @cancel=\"close\"\n      @close=\"close\"\n    />\n    <SmartGroupManual\n      v-else\n      :key=\"manualKey\"\n      :sample-names=\"manualSampleNames\"\n      :seed=\"manualSeed\"\n      :palette=\"manualPalette\"\n      @done=\"applyManual\"\n      @auto=\"activeWorkflow = 'auto'\"\n      @cancel=\"close\"\n      @close=\"close\"\n    />\n  </BaseModal>\n</template>\n","<script setup lang=\"ts\">\n/**\n * Smart Group modal. Parses sample naming patterns into candidate grouping\n * fields (auto / \"Field Recipe\") or lets you assign cohorts by hand (manual),\n * staying wired to the `useAutoGroup` engine. The UI is the Smart Group design\n * (`SmartGroupFieldRecipe` / `SmartGroupManual`) driven in controlled mode; this\n * component is the adapter that maps engine state ↔ that UI and emits the\n * resulting `AutoGroupResult`. Private to `SampleSelector`, which emits that\n * result as its `smartGroup` event.\n */\nimport { ref, computed, watch } from 'vue'\nimport BaseModal from '../BaseModal.vue'\nimport AlertBox from '../AlertBox.vue'\nimport SmartGroupFieldRecipe from '../SmartGroupFieldRecipe.vue'\nimport SmartGroupManual from '../SmartGroupManual.vue'\nimport { useAutoGroup, parseCSV } from './useAutoGroup'\nimport { useApi } from '../../composables/useApi'\nimport { readFileAsText } from '../../composables/useFileImport'\nimport {\n  engineAnatomy,\n  engineColumnNames,\n  engineGroupsToRail,\n  engineQcChips,\n  engineSchemasToCards,\n  engineToQcRoute,\n  experimentLabel,\n  manualSamplesToResult,\n  qcRouteToEngine,\n  seedFromGroups,\n} from './AutoGroupModalInternal.adapter'\nimport { SAMPLE_GROUP_COLOR_OPTIONS } from '../SampleSelector.colors'\nimport { mostlySingletons, type QcRoute } from '../SmartGroupFieldRecipe.groups'\nimport type { ManualSample } from '../SmartGroupManual.cohorts'\nimport type { ManualPaletteEntry } from '../SmartGroup.types'\nimport type { AutoGroupResult } from '../../types/auto-group'\nimport type { SampleGroup } from '../../types'\n\ntype GroupingWorkflow = 'auto' | 'manual'\n\nexport interface Props {\n  open: boolean\n  samples?: string[]\n  groups?: SampleGroup[]\n  initialMode?: GroupingWorkflow\n  experimentId?: number\n  /** Pre-fetched design data — bypasses API fetch when provided */\n  designData?: Record<string, unknown>\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  samples: () => [],\n  groups: () => [],\n  initialMode: 'auto',\n  experimentId: undefined,\n  designData: undefined,\n})\n\nconst emit = defineEmits<{\n  'update:open': [value: boolean]\n  'apply': [result: AutoGroupResult]\n}>()\n\nconst autoGroup = useAutoGroup()\nconst api = useApi()\nconst activeWorkflow = ref<GroupingWorkflow>(props.initialMode)\nconst experimentError = ref<string | null>(null)\nconst experimentLoading = ref(false)\n\n// QC routing — a 3-way state stored as two booleans so downstream engine\n// dispositions stay stable; the UI presents it as overlay / exclude / mix.\nconst qcAsOverlay = ref(true)\nconst excludeQc = ref(false)\ntype QcRouting = 'overlay' | 'exclude' | 'mix'\nconst qcRouting = computed<QcRouting>(() => {\n  if (excludeQc.value) return 'exclude'\n  if (qcAsOverlay.value) return 'overlay'\n  return 'mix'\n})\nfunction setQcRouting(value: QcRouting) {\n  qcAsOverlay.value = value === 'overlay'\n  excludeQc.value = value === 'exclude'\n  autoGroup.setClassDispositions(\n    c => c.kind !== 'biological' && c.kind !== 'unknown',\n    value === 'exclude' ? 'exclude' : value === 'overlay' ? 'overlay' : 'group',\n  )\n}\n\n// ── Auto mode (Field Recipe) ─────────────────────────────────────────\n// The recipe represents the whole batch, including fields that only exist in\n// another class or token-length schema split.\nconst fieldCards = computed(() =>\n  engineSchemasToCards(autoGroup.schemas.value, autoGroup.activeClassKey.value),\n)\nconst railGroups = computed(() =>\n  engineGroupsToRail(autoGroup.result.value.experimentalGroups ?? autoGroup.groups.value),\n)\nconst qcSampleCount = computed(() =>\n  autoGroup.classes.value\n    .filter(c => c.kind !== 'biological' && c.kind !== 'unknown')\n    .reduce((acc, c) => acc + c.members.length, 0),\n)\nconst qcChips = computed(() => (qcRouting.value === 'mix' ? [] : engineQcChips(autoGroup.classes.value)))\nconst fieldRecipeRoute = computed<QcRoute>(() => engineToQcRoute(qcRouting.value))\nconst headerCount = computed(() => autoGroup.samples.value.length)\nconst headerLabel = computed(() => experimentLabel(autoGroup.experiment.value))\nconst reservedNames = computed(() => engineColumnNames(autoGroup.schemas.value))\n// The example name is shown for pasted names only: CSV and experiment input\n// have columns, not name tokens.\nconst anatomy = computed(() =>\n  autoGroup.inputMode.value === 'paste'\n    ? engineAnatomy(autoGroup.classes.value, autoGroup.schemas.value, autoGroup.tokenized.value, fieldCards.value)\n    : [],\n)\n// A design with no replicate in the names gives groups of one sample. Each\n// field that is on then shows how many groups remain when the user switches\n// it off, so the user can find the field that is not part of the condition.\n// The rule is the one of the summary callout, so the two show together.\nconst fieldHints = computed(() => {\n  const needsHelp = mostlySingletons(railGroups.value)\n  // ponytail: one full composeGroups for each field that is on (a few ms for\n  // 200 samples). Count distinct group keys instead if a large batch is slow.\n  return fieldCards.value.fields.map((field, index) => {\n    if (!needsHelp || !fieldCards.value.enabled[index]) return null\n    const remaining = autoGroup.groupCountWithout(field.key)\n    return `off → ${remaining} ${remaining === 1 ? 'group' : 'groups'}`\n  })\n})\n\n// The cards describe the batch, not one class, so edits fan out to every class\n// exposing the field — otherwise a multi-class batch (e.g. a Liver class and a\n// Kidney class) ends up with only half its groups reordered.\nfunction onToggleField(cardIndex: number) {\n  const field = fieldCards.value.fields[cardIndex]\n  if (!field) return\n  autoGroup.toggleGroupByField(field.key)\n}\nfunction onMoveField(cardIndex: number, direction: 'up' | 'down') {\n  const field = fieldCards.value.fields[cardIndex]\n  if (!field) return\n  autoGroup.moveGroupByField(field.key, direction)\n}\nfunction onRenameField(cardIndex: number, name: string) {\n  const field = fieldCards.value.fields[cardIndex]\n  if (!field) return\n  autoGroup.renameGroupByField(field.key, name)\n}\nfunction onRouteChange(route: QcRoute) {\n  setQcRouting(qcRouteToEngine(route))\n}\nfunction applyAuto() {\n  emit('apply', autoGroup.result.value)\n  close()\n}\n\n// CSV upload from the Field Recipe header: parse the file into the engine's CSV\n// path. `samples` derives reactively from csvData and `parseInput()` builds the\n// classes/fields/groups; re-apply the current QC routing like the open watcher.\nasync function onCsvFile(file: File) {\n  experimentError.value = null\n  try {\n    // Parse BEFORE mutating engine state so a malformed/empty/header-only CSV\n    // (parseCSV throws) leaves the engine untouched instead of half-set.\n    const text = await readFileAsText(file)\n    const parsed = parseCSV(text)\n    autoGroup.csvData.value = parsed\n    autoGroup.inputMode.value = 'csv'\n    autoGroup.parseInput()\n    setQcRouting(qcRouting.value)\n  } catch (e) {\n    experimentError.value = e instanceof Error ? e.message : 'Could not read that CSV file.'\n  }\n}\n\n// Template downloads via the engine. `downloadTemplate(mode, format)` defaults to\n// ('prefilled', 'csv'); pass the explicit mode for each menu action.\nfunction onDownloadTemplate() {\n  autoGroup.downloadTemplate('blank', 'csv')\n}\nfunction onDownloadPrefilled() {\n  autoGroup.downloadTemplate('prefilled', 'csv')\n}\n\n// ── Manual mode ──────────────────────────────────────────────────────\n// Hex swatches (the SDK's existing manual palette) rather than SmartGroupManual's\n// var(--mint-sample-1) … token story default: SampleSelector tints group colours via hex8 string\n// concatenation (`group.color + '20'`), so an emitted cohort colour must be a\n// concrete hex value — matching the colours the previous manual modal produced.\nconst MANUAL_SWATCH_LABELS = ['Blue', 'Green', 'Amber', 'Red', 'Violet']\nconst manualPalette: ManualPaletteEntry[] = SAMPLE_GROUP_COLOR_OPTIONS.map((c, i) => ({\n  c,\n  k: MANUAL_SWATCH_LABELS[i] ?? c,\n}))\n// Source from the engine once input is parsed (paste of props.samples, an\n// experiment fetch, OR an uploaded CSV) so CSV-loaded samples reach manual mode\n// too; fall back to the raw prop before the engine has parsed anything.\nconst manualSampleNames = computed(() =>\n  autoGroup.samples.value.length > 0 ? autoGroup.samples.value : props.samples,\n)\nconst manualSeed = computed(() => seedFromGroups(props.groups))\n// Remount the manual builder when the sample set changes so it re-seeds from\n// freshly-loaded experiment data rather than a stale snapshot.\nconst manualKey = computed(() => manualSampleNames.value.join('\\n'))\nfunction applyManual(payload: { samples: ManualSample[] }) {\n  emit('apply', manualSamplesToResult(payload.samples, props.groups))\n  close()\n}\n\nfunction close() {\n  emit('update:open', false)\n}\n\n// A close or a newer fetch makes the response of an earlier fetch obsolete.\nlet fetchGeneration = 0\n\nasync function fetchExperimentData() {\n  if (!props.experimentId && !props.designData) return\n  const generation = ++fetchGeneration\n  autoGroup.inputMode.value = 'experiment'\n  experimentError.value = null\n  experimentLoading.value = true\n  try {\n    let pluginData: Record<string, unknown> | undefined\n    if (props.designData) {\n      pluginData = props.designData\n    } else {\n      const result = await api.get<Record<string, unknown>>(`/experiments/${props.experimentId}/data`)\n      pluginData = result.data as Record<string, unknown> | undefined\n      if (generation !== fetchGeneration) return\n    }\n    if (!pluginData || typeof pluginData !== 'object') {\n      experimentError.value = 'No design data found for this experiment'\n      return\n    }\n    if (!autoGroup.loadExperimentData(pluginData, { samples: props.samples })) {\n      experimentError.value = 'No sample metadata found in this experiment'\n      return\n    }\n    setQcRouting(qcRouting.value)\n  } catch (e) {\n    if (generation === fetchGeneration) {\n      experimentError.value = e instanceof Error ? e.message : 'Failed to fetch experiment data'\n    }\n  } finally {\n    if (generation === fetchGeneration) experimentLoading.value = false\n  }\n}\n\n// Populate the engine from props when the modal opens. Sample ingestion still\n// comes from the `samples` / `designData` / `experimentId` props exactly as\n// before — the redesign just drops the multi-step input/schema/merge UI.\nwatch(\n  () => props.open,\n  (open) => {\n    if (!open) {\n      fetchGeneration += 1\n      experimentLoading.value = false\n      return\n    }\n    activeWorkflow.value = props.initialMode\n    experimentError.value = null\n    qcAsOverlay.value = true\n    excludeQc.value = false\n    autoGroup.reset()\n    if (props.experimentId || props.designData) {\n      fetchExperimentData()\n    } else if (props.samples.length > 0) {\n      autoGroup.rawText.value = props.samples.join('\\n')\n      autoGroup.inputMode.value = 'paste'\n      autoGroup.parseInput()\n      setQcRouting(qcRouting.value)\n    } else {\n      autoGroup.inputMode.value = 'paste'\n    }\n  },\n  { immediate: true },\n)\n</script>\n\n<template>\n  <BaseModal\n    class=\"sg-host\"\n    :open=\"open\"\n    :closable=\"false\"\n    :close-on-overlay=\"false\"\n    :close-on-escape=\"false\"\n    size=\"lg\"\n    @update:open=\"emit('update:open', $event)\"\n  >\n    <AlertBox v-if=\"experimentError\" tone=\"error\" class=\"sg-host__error\">\n      {{ experimentError }}\n    </AlertBox>\n\n    <SmartGroupFieldRecipe\n      v-if=\"activeWorkflow === 'auto'\"\n      :fields=\"fieldCards.fields\"\n      :enabled=\"fieldCards.enabled\"\n      :layers=\"fieldCards.layers\"\n      :groups=\"railGroups\"\n      :qc-chips=\"qcChips\"\n      :route=\"fieldRecipeRoute\"\n      :header-count=\"headerCount\"\n      :qc-count=\"qcSampleCount\"\n      :can-download-template=\"autoGroup.canDownloadTemplate.value\"\n      :loading=\"experimentLoading\"\n      :experiment-label=\"headerLabel\"\n      :anatomy=\"anatomy\"\n      :hints=\"fieldHints\"\n      :reserved-names=\"reservedNames\"\n      renamable\n      @toggle=\"onToggleField\"\n      @move=\"onMoveField\"\n      @rename=\"onRenameField\"\n      @update:route=\"onRouteChange\"\n      @csv-file=\"onCsvFile\"\n      @download-template=\"onDownloadTemplate\"\n      @download-prefilled=\"onDownloadPrefilled\"\n      @apply=\"applyAuto\"\n      @manual=\"activeWorkflow = 'manual'\"\n      @cancel=\"close\"\n      @close=\"close\"\n    />\n    <SmartGroupManual\n      v-else\n      :key=\"manualKey\"\n      :sample-names=\"manualSampleNames\"\n      :seed=\"manualSeed\"\n      :palette=\"manualPalette\"\n      @done=\"applyManual\"\n      @auto=\"activeWorkflow = 'auto'\"\n      @cancel=\"close\"\n      @close=\"close\"\n    />\n  </BaseModal>\n</template>\n","<script setup lang=\"ts\">\n/** Single draggable sample row used by grouped and ungrouped SampleSelector lists. */\nimport BaseCheckbox from './BaseCheckbox.vue'\n\ninterface Props {\n  sample: string\n  selected: boolean\n  dragging?: boolean\n  removable?: boolean\n}\n\nwithDefaults(defineProps<Props>(), {\n  dragging: false,\n  removable: false,\n})\n\nconst emit = defineEmits<{\n  toggle: []\n  remove: []\n}>()\n</script>\n\n<template>\n  <div\n    :class=\"[\n      'mint-sample-selector__sample',\n      dragging ? 'mint-sample-selector__sample--dragging' : '',\n    ]\"\n    :title=\"sample\"\n    :aria-label=\"`Sample: ${sample}`\"\n    draggable=\"true\"\n  >\n    <svg class=\"mint-sample-selector__drag-handle\" aria-hidden=\"true\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n      <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 8h16M4 16h16\" />\n    </svg>\n    <BaseCheckbox\n      :model-value=\"selected\"\n      size=\"sm\"\n      :aria-label=\"`Select sample ${sample}`\"\n      class=\"mint-sample-selector__checkbox\"\n      @update:model-value=\"emit('toggle')\"\n    />\n    <span class=\"mint-sample-selector__sample-name\">{{ sample }}</span>\n    <button\n      v-if=\"removable\"\n      type=\"button\"\n      class=\"mint-sample-selector__remove-btn\"\n      title=\"Remove from group\"\n      aria-label=\"Remove from group\"\n      @click=\"emit('remove')\"\n    >\n      <svg aria-hidden=\"true\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n        <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M20 12H4\" />\n      </svg>\n    </button>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Single draggable sample row used by grouped and ungrouped SampleSelector lists. */\nimport BaseCheckbox from './BaseCheckbox.vue'\n\ninterface Props {\n  sample: string\n  selected: boolean\n  dragging?: boolean\n  removable?: boolean\n}\n\nwithDefaults(defineProps<Props>(), {\n  dragging: false,\n  removable: false,\n})\n\nconst emit = defineEmits<{\n  toggle: []\n  remove: []\n}>()\n</script>\n\n<template>\n  <div\n    :class=\"[\n      'mint-sample-selector__sample',\n      dragging ? 'mint-sample-selector__sample--dragging' : '',\n    ]\"\n    :title=\"sample\"\n    :aria-label=\"`Sample: ${sample}`\"\n    draggable=\"true\"\n  >\n    <svg class=\"mint-sample-selector__drag-handle\" aria-hidden=\"true\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n      <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M4 8h16M4 16h16\" />\n    </svg>\n    <BaseCheckbox\n      :model-value=\"selected\"\n      size=\"sm\"\n      :aria-label=\"`Select sample ${sample}`\"\n      class=\"mint-sample-selector__checkbox\"\n      @update:model-value=\"emit('toggle')\"\n    />\n    <span class=\"mint-sample-selector__sample-name\">{{ sample }}</span>\n    <button\n      v-if=\"removable\"\n      type=\"button\"\n      class=\"mint-sample-selector__remove-btn\"\n      title=\"Remove from group\"\n      aria-label=\"Remove from group\"\n      @click=\"emit('remove')\"\n    >\n      <svg aria-hidden=\"true\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n        <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M20 12H4\" />\n      </svg>\n    </button>\n  </div>\n</template>\n","import type { SampleGroupNode } from '../composables/useSampleGroups'\nimport type { GroupDragKind, GroupReorderPosition } from './SampleSelector.groups'\n\n/**\n * Handlers and state predicates shared by every level of the group tree.\n * Passed down as a single prop so the recursive row component does not have to\n * re-emit each event at every nesting level.\n */\nexport interface SampleGroupTreeContext {\n  isExpanded: (key: string) => boolean\n  toggleExpanded: (key: string) => void\n  isSampleSelected: (sample: string) => boolean\n  isFullySelected: (samples: string[]) => boolean\n  isPartiallySelected: (samples: string[]) => boolean\n  toggleSamples: (samples: string[]) => void\n  toggleSample: (sample: string) => void\n  removeGroups: (groupNames: string[]) => void\n  removeSampleFromGroup: (sample: string, groupName: string) => void\n  openColorPicker: (groupNames: string[], event: Event) => void\n  // Drag state + handlers, mirroring `useSampleSelectorDrag`.\n  draggingSample: () => string | null\n  dragOverGroup: () => string | null\n  draggingGroup: () => string | null\n  draggingGroupKind: () => GroupDragKind | null\n  reorderTarget: () => string | null\n  reorderPosition: () => GroupReorderPosition | null\n  onSampleDragStart: (sample: string, groupName: string | null, event: DragEvent) => void\n  onSampleDragEnd: () => void\n  onSampleDragOver: (groupName: string, event: DragEvent) => void\n  onSampleDragLeave: () => void\n  onSampleDrop: (groupName: string, event: DragEvent) => void\n  onGroupDragStart: (name: string, kind: GroupDragKind, event: DragEvent) => void\n  onGroupDragEnd: () => void\n  onGroupDragOver: (name: string, kind: GroupDragKind, event: DragEvent) => void\n  onGroupDragLeave: (event: DragEvent) => void\n  onGroupDrop: (name: string, kind: GroupDragKind, event: DragEvent) => void\n  /** Alt+ArrowUp / Alt+ArrowDown reorder a group among its siblings. */\n  onGroupReorderKeydown: (name: string, kind: GroupDragKind, event: KeyboardEvent) => void\n}\n\n/** Every concrete group name beneath a node, in tree order. */\nexport function collectLeafGroupNames(node: SampleGroupNode): string[] {\n  if (node.group) return [node.group.name]\n  return node.children.flatMap(collectLeafGroupNames)\n}\n\n/** Expansion keys for a whole tree, used by \"expand all\". */\nexport function collectNodeKeys(nodes: SampleGroupNode[]): string[] {\n  return nodes.flatMap(node => [node.key, ...collectNodeKeys(node.children)])\n}\n","<script setup lang=\"ts\">\n/**\n * One row of the sample-selector group hierarchy, rendered recursively so a\n * grouping of any depth (Tissue → Dose → Timepoint → samples) nests properly.\n *\n * Roots carry the family affordances (large dot, colour-family picker) and\n * leaves carry the group affordances (sample drop target, sample rows); the\n * levels in between are pure path nodes that aggregate their descendants.\n */\nimport { computed } from 'vue'\nimport BaseCheckbox from './BaseCheckbox.vue'\nimport SampleSelectorSampleRow from './SampleSelectorSampleRow.vue'\nimport type { SampleGroupNode } from '../composables/useSampleGroups'\nimport { collectLeafGroupNames, type SampleGroupTreeContext } from './SampleSelector.tree'\n\ninterface Props {\n  node: SampleGroupNode\n  depth: number\n  ctx: SampleGroupTreeContext\n}\n\nconst props = defineProps<Props>()\n\nconst isRoot = computed(() => props.depth === 0)\nconst isLeaf = computed(() => props.node.children.length === 0)\nconst expanded = computed(() => props.ctx.isExpanded(props.node.key))\nconst leafGroupNames = computed(() => collectLeafGroupNames(props.node))\nconst selectedCount = computed(() => props.node.allSamples.filter(props.ctx.isSampleSelected).length)\n/** Roots reorder as a family, leaves as individual groups; path nodes stay put. */\nconst dragKind = computed(() => (isRoot.value ? 'major' : isLeaf.value ? 'sub' : null))\n/** Reorder drags address a family by its label but a group by its full name. */\nconst dragName = computed(() =>\n  isRoot.value ? props.node.label : (props.node.group?.name ?? props.node.label),\n)\nconst isDragging = computed(\n  () => dragKind.value !== null\n    && props.ctx.draggingGroup() === dragName.value\n    && props.ctx.draggingGroupKind() === dragKind.value,\n)\nconst reorderEdge = computed(() => {\n  if (dragKind.value === null) return null\n  if (props.ctx.reorderTarget() !== dragName.value) return null\n  if (props.ctx.draggingGroupKind() !== dragKind.value) return null\n  return props.ctx.reorderPosition()\n})\n\nfunction onHeaderDragStart(event: DragEvent) {\n  if (dragKind.value === null) return\n  props.ctx.onGroupDragStart(dragName.value, dragKind.value, event)\n}\nfunction onHeaderDragOver(event: DragEvent) {\n  if (dragKind.value === null) return\n  props.ctx.onGroupDragOver(dragName.value, dragKind.value, event)\n}\nfunction onHeaderDrop(event: DragEvent) {\n  if (dragKind.value === null) return\n  props.ctx.onGroupDrop(dragName.value, dragKind.value, event)\n}\n\n/** Enter/Space expand the node; Alt+ArrowUp/Down reorder it among its siblings. */\nfunction onHeaderKeydown(event: KeyboardEvent) {\n  if (event.altKey) {\n    if (dragKind.value === null) return\n    props.ctx.onGroupReorderKeydown(dragName.value, dragKind.value, event)\n    return\n  }\n  // Keys from the checkbox or colour button inside the header are theirs, not the header's.\n  if (event.target !== event.currentTarget) return\n  if (event.key !== 'Enter' && event.key !== ' ') return\n  event.preventDefault()\n  props.ctx.toggleExpanded(props.node.key)\n}\n</script>\n\n<template>\n  <div\n    :class=\"[\n      isRoot ? 'mint-sample-selector__major-group' : 'mint-sample-selector__sub-group',\n      isLeaf && ctx.dragOverGroup() === node.group?.name\n        ? 'mint-sample-selector__sub-group--drag-over'\n        : '',\n    ]\"\n    v-on=\"isLeaf && node.group\n      ? {\n        dragover: (e: DragEvent) => ctx.onSampleDragOver(node.group!.name, e),\n        dragleave: ctx.onSampleDragLeave,\n        drop: (e: DragEvent) => ctx.onSampleDrop(node.group!.name, e),\n      }\n      : {}\"\n  >\n    <!-- Header -->\n    <div\n      :class=\"[\n        isRoot ? 'mint-sample-selector__major-header' : 'mint-sample-selector__sub-header',\n        isDragging ? 'mint-sample-selector__header--dragging' : '',\n        reorderEdge === 'before' ? 'mint-sample-selector__header--drag-over-before' : '',\n        reorderEdge === 'after' ? 'mint-sample-selector__header--drag-over-after' : '',\n      ]\"\n      :draggable=\"dragKind !== null\"\n      role=\"button\"\n      tabindex=\"0\"\n      :aria-expanded=\"expanded\"\n      :aria-label=\"dragKind !== null\n        ? `${node.label}. Press Alt with the up or down arrow keys to reorder.`\n        : node.label\"\n      @click=\"ctx.toggleExpanded(node.key)\"\n      @keydown=\"onHeaderKeydown\"\n      @dragstart=\"onHeaderDragStart\"\n      @dragend=\"ctx.onGroupDragEnd\"\n      @dragover=\"onHeaderDragOver\"\n      @dragleave=\"ctx.onGroupDragLeave($event)\"\n      @drop=\"onHeaderDrop\"\n    >\n      <svg\n        :class=\"[\n          'mint-sample-selector__chevron',\n          isRoot ? '' : 'mint-sample-selector__chevron--small',\n          expanded ? 'mint-sample-selector__chevron--open' : '',\n        ]\"\n        fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n      >\n        <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n      </svg>\n\n      <BaseCheckbox\n        :model-value=\"ctx.isFullySelected(node.allSamples)\"\n        :indeterminate=\"ctx.isPartiallySelected(node.allSamples)\"\n        size=\"sm\"\n        :aria-label=\"`Select ${node.label}`\"\n        class=\"mint-sample-selector__checkbox\"\n        @click.stop\n        @update:model-value=\"ctx.toggleSamples(node.allSamples)\"\n      />\n\n      <button\n        v-if=\"isRoot\"\n        type=\"button\"\n        class=\"mint-sample-selector__color-dot mint-sample-selector__color-dot--large mint-sample-selector__color-dot--clickable\"\n        :style=\"{ backgroundColor: node.color }\"\n        :title=\"`Change ${node.label} color family`\"\n        :aria-label=\"`Change ${node.label} color family`\"\n        @click.stop=\"ctx.openColorPicker(leafGroupNames, $event)\"\n      />\n      <div\n        v-else\n        class=\"mint-sample-selector__color-dot\"\n        :style=\"{ backgroundColor: node.color }\"\n        aria-hidden=\"true\"\n      />\n\n      <span\n        :class=\"isRoot ? 'mint-sample-selector__major-name' : 'mint-sample-selector__sub-name'\"\n        :title=\"node.group?.name ?? node.label\"\n      >{{ node.label }}</span>\n\n      <span class=\"mint-sample-selector__count-badge\">{{ selectedCount }}/{{ node.allSamples.length }}</span>\n\n      <button\n        type=\"button\"\n        class=\"mint-sample-selector__delete-btn mint-sample-selector__delete-btn--hidden\"\n        :title=\"`Remove ${node.label}`\"\n        :aria-label=\"`Remove ${node.label}`\"\n        @click.stop=\"ctx.removeGroups(leafGroupNames)\"\n      >\n        <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n          <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M6 18L18 6M6 6l12 12\" />\n        </svg>\n      </button>\n    </div>\n\n    <!-- Children: nested nodes, or the sample rows on a leaf -->\n    <Transition name=\"mint-collapse\">\n      <div\n        v-if=\"expanded && !isLeaf\"\n        class=\"mint-sample-selector__sub-groups\"\n        :style=\"{ borderColor: node.displayBorder }\"\n      >\n        <SampleSelectorGroupNode\n          v-for=\"child in node.children\"\n          :key=\"child.key\"\n          :node=\"child\"\n          :depth=\"depth + 1\"\n          :ctx=\"ctx\"\n        />\n      </div>\n      <div\n        v-else-if=\"expanded && node.group\"\n        class=\"mint-sample-selector__samples\"\n        :style=\"{ borderColor: node.displayBorder }\"\n      >\n        <SampleSelectorSampleRow\n          v-for=\"sample in node.group.samples\"\n          :key=\"sample\"\n          :sample=\"sample\"\n          :selected=\"ctx.isSampleSelected(sample)\"\n          :dragging=\"ctx.draggingSample() === sample\"\n          removable\n          @dragstart=\"(e: DragEvent) => ctx.onSampleDragStart(sample, node.group!.name, e)\"\n          @dragend=\"ctx.onSampleDragEnd\"\n          @toggle=\"ctx.toggleSample(sample)\"\n          @remove=\"ctx.removeSampleFromGroup(sample, node.group!.name)\"\n        />\n      </div>\n    </Transition>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/**\n * One row of the sample-selector group hierarchy, rendered recursively so a\n * grouping of any depth (Tissue → Dose → Timepoint → samples) nests properly.\n *\n * Roots carry the family affordances (large dot, colour-family picker) and\n * leaves carry the group affordances (sample drop target, sample rows); the\n * levels in between are pure path nodes that aggregate their descendants.\n */\nimport { computed } from 'vue'\nimport BaseCheckbox from './BaseCheckbox.vue'\nimport SampleSelectorSampleRow from './SampleSelectorSampleRow.vue'\nimport type { SampleGroupNode } from '../composables/useSampleGroups'\nimport { collectLeafGroupNames, type SampleGroupTreeContext } from './SampleSelector.tree'\n\ninterface Props {\n  node: SampleGroupNode\n  depth: number\n  ctx: SampleGroupTreeContext\n}\n\nconst props = defineProps<Props>()\n\nconst isRoot = computed(() => props.depth === 0)\nconst isLeaf = computed(() => props.node.children.length === 0)\nconst expanded = computed(() => props.ctx.isExpanded(props.node.key))\nconst leafGroupNames = computed(() => collectLeafGroupNames(props.node))\nconst selectedCount = computed(() => props.node.allSamples.filter(props.ctx.isSampleSelected).length)\n/** Roots reorder as a family, leaves as individual groups; path nodes stay put. */\nconst dragKind = computed(() => (isRoot.value ? 'major' : isLeaf.value ? 'sub' : null))\n/** Reorder drags address a family by its label but a group by its full name. */\nconst dragName = computed(() =>\n  isRoot.value ? props.node.label : (props.node.group?.name ?? props.node.label),\n)\nconst isDragging = computed(\n  () => dragKind.value !== null\n    && props.ctx.draggingGroup() === dragName.value\n    && props.ctx.draggingGroupKind() === dragKind.value,\n)\nconst reorderEdge = computed(() => {\n  if (dragKind.value === null) return null\n  if (props.ctx.reorderTarget() !== dragName.value) return null\n  if (props.ctx.draggingGroupKind() !== dragKind.value) return null\n  return props.ctx.reorderPosition()\n})\n\nfunction onHeaderDragStart(event: DragEvent) {\n  if (dragKind.value === null) return\n  props.ctx.onGroupDragStart(dragName.value, dragKind.value, event)\n}\nfunction onHeaderDragOver(event: DragEvent) {\n  if (dragKind.value === null) return\n  props.ctx.onGroupDragOver(dragName.value, dragKind.value, event)\n}\nfunction onHeaderDrop(event: DragEvent) {\n  if (dragKind.value === null) return\n  props.ctx.onGroupDrop(dragName.value, dragKind.value, event)\n}\n\n/** Enter/Space expand the node; Alt+ArrowUp/Down reorder it among its siblings. */\nfunction onHeaderKeydown(event: KeyboardEvent) {\n  if (event.altKey) {\n    if (dragKind.value === null) return\n    props.ctx.onGroupReorderKeydown(dragName.value, dragKind.value, event)\n    return\n  }\n  // Keys from the checkbox or colour button inside the header are theirs, not the header's.\n  if (event.target !== event.currentTarget) return\n  if (event.key !== 'Enter' && event.key !== ' ') return\n  event.preventDefault()\n  props.ctx.toggleExpanded(props.node.key)\n}\n</script>\n\n<template>\n  <div\n    :class=\"[\n      isRoot ? 'mint-sample-selector__major-group' : 'mint-sample-selector__sub-group',\n      isLeaf && ctx.dragOverGroup() === node.group?.name\n        ? 'mint-sample-selector__sub-group--drag-over'\n        : '',\n    ]\"\n    v-on=\"isLeaf && node.group\n      ? {\n        dragover: (e: DragEvent) => ctx.onSampleDragOver(node.group!.name, e),\n        dragleave: ctx.onSampleDragLeave,\n        drop: (e: DragEvent) => ctx.onSampleDrop(node.group!.name, e),\n      }\n      : {}\"\n  >\n    <!-- Header -->\n    <div\n      :class=\"[\n        isRoot ? 'mint-sample-selector__major-header' : 'mint-sample-selector__sub-header',\n        isDragging ? 'mint-sample-selector__header--dragging' : '',\n        reorderEdge === 'before' ? 'mint-sample-selector__header--drag-over-before' : '',\n        reorderEdge === 'after' ? 'mint-sample-selector__header--drag-over-after' : '',\n      ]\"\n      :draggable=\"dragKind !== null\"\n      role=\"button\"\n      tabindex=\"0\"\n      :aria-expanded=\"expanded\"\n      :aria-label=\"dragKind !== null\n        ? `${node.label}. Press Alt with the up or down arrow keys to reorder.`\n        : node.label\"\n      @click=\"ctx.toggleExpanded(node.key)\"\n      @keydown=\"onHeaderKeydown\"\n      @dragstart=\"onHeaderDragStart\"\n      @dragend=\"ctx.onGroupDragEnd\"\n      @dragover=\"onHeaderDragOver\"\n      @dragleave=\"ctx.onGroupDragLeave($event)\"\n      @drop=\"onHeaderDrop\"\n    >\n      <svg\n        :class=\"[\n          'mint-sample-selector__chevron',\n          isRoot ? '' : 'mint-sample-selector__chevron--small',\n          expanded ? 'mint-sample-selector__chevron--open' : '',\n        ]\"\n        fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n      >\n        <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n      </svg>\n\n      <BaseCheckbox\n        :model-value=\"ctx.isFullySelected(node.allSamples)\"\n        :indeterminate=\"ctx.isPartiallySelected(node.allSamples)\"\n        size=\"sm\"\n        :aria-label=\"`Select ${node.label}`\"\n        class=\"mint-sample-selector__checkbox\"\n        @click.stop\n        @update:model-value=\"ctx.toggleSamples(node.allSamples)\"\n      />\n\n      <button\n        v-if=\"isRoot\"\n        type=\"button\"\n        class=\"mint-sample-selector__color-dot mint-sample-selector__color-dot--large mint-sample-selector__color-dot--clickable\"\n        :style=\"{ backgroundColor: node.color }\"\n        :title=\"`Change ${node.label} color family`\"\n        :aria-label=\"`Change ${node.label} color family`\"\n        @click.stop=\"ctx.openColorPicker(leafGroupNames, $event)\"\n      />\n      <div\n        v-else\n        class=\"mint-sample-selector__color-dot\"\n        :style=\"{ backgroundColor: node.color }\"\n        aria-hidden=\"true\"\n      />\n\n      <span\n        :class=\"isRoot ? 'mint-sample-selector__major-name' : 'mint-sample-selector__sub-name'\"\n        :title=\"node.group?.name ?? node.label\"\n      >{{ node.label }}</span>\n\n      <span class=\"mint-sample-selector__count-badge\">{{ selectedCount }}/{{ node.allSamples.length }}</span>\n\n      <button\n        type=\"button\"\n        class=\"mint-sample-selector__delete-btn mint-sample-selector__delete-btn--hidden\"\n        :title=\"`Remove ${node.label}`\"\n        :aria-label=\"`Remove ${node.label}`\"\n        @click.stop=\"ctx.removeGroups(leafGroupNames)\"\n      >\n        <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n          <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M6 18L18 6M6 6l12 12\" />\n        </svg>\n      </button>\n    </div>\n\n    <!-- Children: nested nodes, or the sample rows on a leaf -->\n    <Transition name=\"mint-collapse\">\n      <div\n        v-if=\"expanded && !isLeaf\"\n        class=\"mint-sample-selector__sub-groups\"\n        :style=\"{ borderColor: node.displayBorder }\"\n      >\n        <SampleSelectorGroupNode\n          v-for=\"child in node.children\"\n          :key=\"child.key\"\n          :node=\"child\"\n          :depth=\"depth + 1\"\n          :ctx=\"ctx\"\n        />\n      </div>\n      <div\n        v-else-if=\"expanded && node.group\"\n        class=\"mint-sample-selector__samples\"\n        :style=\"{ borderColor: node.displayBorder }\"\n      >\n        <SampleSelectorSampleRow\n          v-for=\"sample in node.group.samples\"\n          :key=\"sample\"\n          :sample=\"sample\"\n          :selected=\"ctx.isSampleSelected(sample)\"\n          :dragging=\"ctx.draggingSample() === sample\"\n          removable\n          @dragstart=\"(e: DragEvent) => ctx.onSampleDragStart(sample, node.group!.name, e)\"\n          @dragend=\"ctx.onSampleDragEnd\"\n          @toggle=\"ctx.toggleSample(sample)\"\n          @remove=\"ctx.removeSampleFromGroup(sample, node.group!.name)\"\n        />\n      </div>\n    </Transition>\n  </div>\n</template>\n","/** Split a group name into normalized hierarchy segments. */\nexport function splitSampleGroupPath(groupName: string, separator: string): string[] {\n  const parts = groupName\n    .split(separator)\n    .map(part => part.trim())\n    .filter(part => part.length > 0)\n  return parts.length > 0 ? parts : [groupName]\n}\n\n/** First normalized hierarchy segment, used as the reorderable family key. */\nexport function getSampleGroupMajorPrefix(groupName: string, separator: string): string {\n  return splitSampleGroupPath(groupName, separator)[0]\n}\n\n/** Normalized path above a concrete leaf group. */\nexport function getSampleGroupParentPath(groupName: string, separator: string): string {\n  const parts = splitSampleGroupPath(groupName, separator)\n  return parts.length > 1 ? parts.slice(0, -1).join(separator) : ''\n}\n","import { computed, toValue, type ComputedRef, type Ref } from 'vue'\nimport type { SampleGroup } from '../types'\nimport { deriveShade } from '../utils/color'\nimport { splitSampleGroupPath } from '../utils/sampleGroupPath'\n\nexport type SampleGroupSource<T> =\n  | T\n  | Ref<T>\n  | ComputedRef<T>\n  | (() => T)\n\nexport interface DisplaySampleSubGroup extends SampleGroup {\n  displayColor: string\n  displayBg: string\n  displayBorder: string\n}\n\nexport interface SampleMajorGroup {\n  name: string\n  color: string\n  subGroups: DisplaySampleSubGroup[]\n  allSamples: string[]\n}\n\n/**\n * One node of the sample-group display hierarchy. Interior nodes are path\n * prefixes of the group names (`Liver`, `Liver / High`); leaves carry the\n * concrete group. A group's `name` stays the full path on its leaf because\n * every mutation — drag, delete, colour, selection — resolves groups by name.\n */\nexport interface SampleGroupNode {\n  /** Unique across the tree; use for `:key` and expansion state. */\n  key: string\n  /** This node's own path segment, not the full path. */\n  label: string\n  color: string\n  displayBg: string\n  displayBorder: string\n  /** Every sample beneath this node, in group order. */\n  allSamples: string[]\n  /** Empty for leaves. */\n  children: SampleGroupNode[]\n  /** Present only on leaves. */\n  group?: DisplaySampleSubGroup\n}\n\nexport interface UseSampleGroupsOptions {\n  groups: SampleGroupSource<readonly SampleGroup[]>\n  samples?: SampleGroupSource<readonly string[]>\n  separator?: SampleGroupSource<string | null | undefined>\n  fallbackColor?: SampleGroupSource<string | null | undefined>\n}\n\nexport interface UseSampleGroupsReturn {\n  groups: ComputedRef<SampleGroup[]>\n  separator: ComputedRef<string>\n  /** Full N-layer display hierarchy; one level per group-name segment. */\n  groupTree: ComputedRef<SampleGroupNode[]>\n  /** Deepest layer count across the tree (1 when groups are flat). */\n  maxDepth: ComputedRef<number>\n  hierarchicalGroups: ComputedRef<SampleMajorGroup[]>\n  showHierarchy: ComputedRef<boolean>\n  groupedSamples: ComputedRef<Set<string>>\n  ungroupedSamples: ComputedRef<string[]>\n  findGroup: (groupName: string) => SampleGroup | undefined\n  getGroupColor: (groupName: string) => string\n}\n\n/** Shared sample-group hierarchy, color, and ungrouped-sample derivation for lab selectors. */\nexport function useSampleGroups(options: UseSampleGroupsOptions): UseSampleGroupsReturn {\n  const groups = computed(() => [...toValue(options.groups)])\n  const samples = computed(() => [...(toValue(options.samples) ?? [])])\n  const fallbackColor = computed(() => toValue(options.fallbackColor) || '#3B82F6')\n  const separator = computed(() => {\n    const explicit = toValue(options.separator)\n    if (explicit) return explicit\n    return groups.value.some(group => group.name.includes('/')) ? '/' : '_'\n  })\n\n  // Groups are bucketed by their first segment (the major/family), then each\n  // family is expanded into a full prefix tree. Shades are assigned per family\n  // across its leaves so a family keeps one hue with a light→dark gradient,\n  // exactly as the two-level model did.\n  const families = computed(() => {\n    const byMajor = new Map<string, SampleGroup[]>()\n    for (const group of groups.value) {\n      const majorName = getMajorGroupName(group.name, separator.value)\n      const existing = byMajor.get(majorName)\n      if (existing) existing.push(group)\n      else byMajor.set(majorName, [group])\n    }\n    return [...byMajor.entries()].map(([name, members]) => {\n      const color = members[0]?.color || fallbackColor.value\n      return {\n        name,\n        color,\n        subGroups: members.map((group, index) => {\n          const displayColor = deriveShade(color, index, members.length)\n          return {\n            ...group,\n            displayColor,\n            displayBg: displayColor + '20',\n            displayBorder: displayColor + '40',\n          }\n        }),\n      }\n    })\n  })\n\n  const groupTree = computed<SampleGroupNode[]>(() => {\n    const roots: SampleGroupNode[] = []\n\n    for (const family of families.value) {\n      // Interior nodes are shared by path so siblings collapse into one parent;\n      // leaves are keyed separately so a group whose full path equals an\n      // interior path (e.g. \"Liver\" alongside \"Liver / High\") stays reachable\n      // instead of being swallowed by the prefix node.\n      const interior = new Map<string, SampleGroupNode>()\n\n      for (const subGroup of family.subGroups) {\n        const segments = splitSampleGroupPath(subGroup.name, separator.value)\n        const leafLabel = segments[segments.length - 1] ?? subGroup.name\n        let siblings = roots\n        let path = ''\n\n        for (const segment of segments.slice(0, -1)) {\n          path = path ? `${path}/${segment}` : segment\n          let node = interior.get(path)\n          if (!node) {\n            node = {\n              key: `node:${family.name}/${path}`,\n              label: segment,\n              color: family.color,\n              displayBg: family.color + '20',\n              displayBorder: family.color + '40',\n              allSamples: [],\n              children: [],\n            }\n            interior.set(path, node)\n            siblings.push(node)\n          }\n          node.allSamples.push(...subGroup.samples)\n          siblings = node.children\n        }\n\n        siblings.push({\n          key: `leaf:${subGroup.name}`,\n          label: leafLabel,\n          color: subGroup.displayColor,\n          displayBg: subGroup.displayBg,\n          displayBorder: subGroup.displayBorder,\n          allSamples: [...subGroup.samples],\n          children: [],\n          group: subGroup,\n        })\n      }\n    }\n\n    return roots\n  })\n\n  const maxDepth = computed(() => {\n    const depthOf = (nodes: SampleGroupNode[]): number =>\n      nodes.reduce((deepest, node) => Math.max(deepest, 1 + depthOf(node.children)), 0)\n    return depthOf(groupTree.value)\n  })\n\n  const hierarchicalGroups = computed<SampleMajorGroup[]>(() =>\n    families.value.map(family => ({\n      name: family.name,\n      color: family.color,\n      subGroups: family.subGroups,\n      allSamples: family.subGroups.flatMap(group => group.samples),\n    })),\n  )\n\n  const showHierarchy = computed(() => maxDepth.value > 1)\n\n  const groupedSamples = computed(() =>\n    new Set(groups.value.flatMap(group => group.samples))\n  )\n\n  const ungroupedSamples = computed(() =>\n    samples.value.filter(sample => !groupedSamples.value.has(sample))\n  )\n\n  function findGroup(groupName: string): SampleGroup | undefined {\n    return groups.value.find(group => group.name === groupName)\n  }\n\n  function getGroupColor(groupName: string): string {\n    return findGroup(groupName)?.color || fallbackColor.value\n  }\n\n  return {\n    groups,\n    separator,\n    groupTree,\n    maxDepth,\n    hierarchicalGroups,\n    showHierarchy,\n    groupedSamples,\n    ungroupedSamples,\n    findGroup,\n    getGroupColor,\n  }\n}\n\nfunction getMajorGroupName(groupName: string, separator: string): string {\n  return splitSampleGroupPath(groupName, separator)[0]\n}\n","import type { SampleGroup } from '../types'\nimport { getSampleGroupMajorPrefix } from '../utils/sampleGroupPath'\n\nexport {\n  getSampleGroupMajorPrefix,\n  getSampleGroupParentPath,\n  splitSampleGroupPath,\n} from '../utils/sampleGroupPath'\n\nexport type GroupDragKind = 'major' | 'sub' | 'flat'\nexport type GroupReorderPosition = 'before' | 'after'\n\nexport function detectSampleGroupSeparator(groups: SampleGroup[]): string {\n  return groups.some(group => group.name.includes('/')) ? '/' : '_'\n}\n\nexport function moveSampleToGroup(\n  groups: SampleGroup[],\n  sample: string,\n  sourceGroup: string | null,\n  targetGroup: string,\n): SampleGroup[] {\n  if (sourceGroup === targetGroup) return groups\n\n  return groups.map(group => {\n    if (sourceGroup && group.name === sourceGroup) {\n      return { ...group, samples: group.samples.filter(item => item !== sample) }\n    }\n    if (group.name === targetGroup && !group.samples.includes(sample)) {\n      return { ...group, samples: [...group.samples, sample] }\n    }\n    return group\n  })\n}\n\n/**\n * Drop every named group. Callers pass the concrete group names beneath the\n * node being removed, so one helper covers a single group, a whole family, or\n * any intermediate hierarchy level.\n */\nexport function removeSampleGroups(groups: SampleGroup[], groupNames: string[]): SampleGroup[] {\n  const removing = new Set(groupNames)\n  return groups.filter(group => !removing.has(group.name))\n}\n\nexport function removeSampleFromGroup(\n  groups: SampleGroup[],\n  sample: string,\n  groupName: string,\n): SampleGroup[] {\n  return groups.map(group =>\n    group.name === groupName\n      ? { ...group, samples: group.samples.filter(item => item !== sample) }\n      : group,\n  )\n}\n\nexport function reorderSampleGroup(\n  groups: SampleGroup[],\n  source: string,\n  target: string,\n  position: GroupReorderPosition,\n): SampleGroup[] {\n  if (source === target) return groups\n\n  const nextGroups = [...groups]\n  const sourceIndex = nextGroups.findIndex(group => group.name === source)\n  if (sourceIndex === -1) return groups\n\n  const [item] = nextGroups.splice(sourceIndex, 1)\n  const targetIndex = nextGroups.findIndex(group => group.name === target)\n  if (targetIndex === -1) return groups\n\n  nextGroups.splice(position === 'before' ? targetIndex : targetIndex + 1, 0, item)\n  return nextGroups\n}\n\nexport function reorderSampleMajorGroup(\n  groups: SampleGroup[],\n  source: string,\n  target: string,\n  position: GroupReorderPosition,\n): SampleGroup[] {\n  if (source === target) return groups\n\n  const separator = detectSampleGroupSeparator(groups)\n  const isSource = (group: SampleGroup) => getSampleGroupMajorPrefix(group.name, separator) === source\n  const isTarget = (group: SampleGroup) => getSampleGroupMajorPrefix(group.name, separator) === target\n\n  const sourceGroups = groups.filter(isSource)\n  if (sourceGroups.length === 0) return groups\n\n  const remainingGroups = groups.filter(group => !isSource(group))\n  let firstTargetIndex = -1\n  let lastTargetIndex = -1\n\n  remainingGroups.forEach((group, index) => {\n    if (isTarget(group)) {\n      if (firstTargetIndex === -1) firstTargetIndex = index\n      lastTargetIndex = index\n    }\n  })\n\n  if (firstTargetIndex === -1) return groups\n\n  const insertIndex = position === 'before' ? firstTargetIndex : lastTargetIndex + 1\n  remainingGroups.splice(insertIndex, 0, ...sourceGroups)\n  return remainingGroups\n}\n","import { ref } from 'vue'\nimport type { SampleGroup } from '../types'\nimport { useReorderAnnouncer } from '../composables/useListReorder'\nimport { getSampleGroupMajorPrefix } from '../utils/sampleGroupPath'\nimport {\n  detectSampleGroupSeparator,\n  getSampleGroupParentPath,\n  moveSampleToGroup,\n  reorderSampleGroup,\n  reorderSampleMajorGroup,\n  type GroupDragKind,\n  type GroupReorderPosition,\n} from './SampleSelector.groups'\n\ninterface MutableSampleGroups {\n  value: SampleGroup[]\n}\n\nexport function useSampleSelectorDrag(groups: MutableSampleGroups) {\n  const draggingSample = ref<string | null>(null)\n  const dragSourceGroup = ref<string | null>(null)\n  const dragOverGroup = ref<string | null>(null)\n\n  const draggingGroup = ref<string | null>(null)\n  const draggingGroupKind = ref<GroupDragKind | null>(null)\n  const reorderTarget = ref<string | null>(null)\n  const reorderPosition = ref<GroupReorderPosition | null>(null)\n  const { announcement, announce, announcerStyle } = useReorderAnnouncer()\n\n  function handleDragStart(sample: string, sourceGroup: string | null, event: DragEvent) {\n    draggingSample.value = sample\n    dragSourceGroup.value = sourceGroup\n    if (event.dataTransfer) {\n      event.dataTransfer.effectAllowed = 'move'\n      event.dataTransfer.setData('text/plain', sample)\n    }\n  }\n\n  function resetDragState() {\n    draggingSample.value = null\n    dragSourceGroup.value = null\n    dragOverGroup.value = null\n  }\n\n  function handleDragEnd() {\n    resetDragState()\n  }\n\n  function handleDragOver(groupName: string, event: DragEvent) {\n    // Only accept this drop target when a sample is being dragged; group drags are handled separately.\n    if (!draggingSample.value) return\n    event.preventDefault()\n    if (event.dataTransfer) {\n      event.dataTransfer.dropEffect = 'move'\n    }\n    dragOverGroup.value = groupName\n  }\n\n  function handleDragLeave() {\n    dragOverGroup.value = null\n  }\n\n  function handleDrop(targetGroupName: string, event: DragEvent) {\n    if (!draggingSample.value) return\n    event.preventDefault()\n\n    const sample = draggingSample.value\n    const sourceGroup = dragSourceGroup.value\n\n    if (sourceGroup === targetGroupName) {\n      resetDragState()\n      return\n    }\n\n    groups.value = moveSampleToGroup(groups.value, sample, sourceGroup, targetGroupName)\n    resetDragState()\n  }\n\n  function handleGroupDragStart(name: string, kind: GroupDragKind, event: DragEvent) {\n    draggingGroup.value = name\n    draggingGroupKind.value = kind\n    if (event.dataTransfer) {\n      event.dataTransfer.effectAllowed = 'move'\n      event.dataTransfer.setData('text/plain', `mint-group:${name}`)\n    }\n  }\n\n  function handleGroupDragEnd() {\n    draggingGroup.value = null\n    draggingGroupKind.value = null\n    reorderTarget.value = null\n    reorderPosition.value = null\n  }\n\n  function handleGroupDragOver(name: string, kind: GroupDragKind, event: DragEvent) {\n    if (!draggingGroup.value || draggingGroupKind.value !== kind) return\n    if (draggingGroup.value === name) return\n\n    // Leaf reorder is restricted to siblings under the same immediate parent;\n    // crossing any hierarchy boundary would silently rename the group.\n    if (kind === 'sub') {\n      const separator = detectSampleGroupSeparator(groups.value)\n      if (\n        getSampleGroupParentPath(draggingGroup.value, separator) !==\n        getSampleGroupParentPath(name, separator)\n      ) return\n    }\n\n    event.preventDefault()\n    if (event.dataTransfer) event.dataTransfer.dropEffect = 'move'\n\n    const rect = (event.currentTarget as HTMLElement).getBoundingClientRect()\n    reorderTarget.value = name\n    reorderPosition.value = event.clientY < rect.top + rect.height / 2 ? 'before' : 'after'\n  }\n\n  function handleGroupDragLeave(event: DragEvent) {\n    const cur = event.currentTarget as HTMLElement\n    const rel = event.relatedTarget as Node | null\n    if (rel && cur.contains(rel)) return\n    reorderTarget.value = null\n    reorderPosition.value = null\n  }\n\n  function handleGroupDrop(name: string, kind: GroupDragKind, event: DragEvent) {\n    if (!draggingGroup.value || draggingGroupKind.value !== kind) {\n      handleGroupDragEnd()\n      return\n    }\n    const position = reorderPosition.value\n    if (!position || draggingGroup.value === name) {\n      handleGroupDragEnd()\n      return\n    }\n\n    event.preventDefault()\n\n    if (kind === 'major') {\n      const nextGroups = reorderSampleMajorGroup(groups.value, draggingGroup.value, name, position)\n      if (nextGroups !== groups.value) groups.value = nextGroups\n    } else {\n      const nextGroups = reorderSampleGroup(groups.value, draggingGroup.value, name, position)\n      if (nextGroups !== groups.value) groups.value = nextGroups\n    }\n\n    handleGroupDragEnd()\n  }\n\n  /**\n   * Keyboard alternative to the group reorder drag. The hierarchy constrains a\n   * move to the dragged node's siblings (a leaf may not cross a parent), so this\n   * is not a flat list reorder and does not use `useListReorder`: Alt+ArrowUp /\n   * Alt+ArrowDown swap the node with its previous / next sibling instead.\n   */\n  function handleGroupReorderKeydown(name: string, kind: GroupDragKind, event: KeyboardEvent) {\n    if (!event.altKey) return\n    const direction = event.key === 'ArrowUp' ? -1 : event.key === 'ArrowDown' ? 1 : 0\n    if (direction === 0) return\n\n    event.preventDefault()\n    const separator = detectSampleGroupSeparator(groups.value)\n    const siblings = kind === 'major'\n      ? uniqueMajorPrefixes(groups.value, separator)\n      : groups.value\n        .filter(group =>\n          getSampleGroupParentPath(group.name, separator) ===\n          getSampleGroupParentPath(name, separator))\n        .map(group => group.name)\n\n    const currentIndex = siblings.indexOf(name)\n    const target = siblings[currentIndex + direction]\n    if (currentIndex === -1 || target === undefined) return\n\n    const position: GroupReorderPosition = direction === -1 ? 'before' : 'after'\n    const nextGroups = kind === 'major'\n      ? reorderSampleMajorGroup(groups.value, name, target, position)\n      : reorderSampleGroup(groups.value, name, target, position)\n\n    if (nextGroups === groups.value) return\n    groups.value = nextGroups\n    announce(`${name} moved ${direction === -1 ? 'up' : 'down'} to position ${currentIndex + direction + 1} of ${siblings.length}.`)\n  }\n\n  return {\n    announcement,\n    announcerStyle,\n    handleGroupReorderKeydown,\n    draggingSample,\n    dragOverGroup,\n    draggingGroup,\n    draggingGroupKind,\n    reorderTarget,\n    reorderPosition,\n    handleDragStart,\n    handleDragEnd,\n    handleDragOver,\n    handleDragLeave,\n    handleDrop,\n    handleGroupDragStart,\n    handleGroupDragEnd,\n    handleGroupDragOver,\n    handleGroupDragLeave,\n    handleGroupDrop,\n  }\n}\n\n/** Major-group prefixes in tree order, de-duplicated. */\nfunction uniqueMajorPrefixes(groups: SampleGroup[], separator: string): string[] {\n  const seen: string[] = []\n  for (const group of groups) {\n    const prefix = getSampleGroupMajorPrefix(group.name, separator)\n    if (!seen.includes(prefix)) seen.push(prefix)\n  }\n  return seen\n}\n","import type { ComputedRef } from 'vue'\nimport { useListSelection } from '../composables/useListSelection'\n\nexport interface UseSampleSelectorSelectionOptions {\n  selected: () => string[]\n  samples: () => string[]\n  emitSelected: (samples: string[]) => void\n}\n\nexport interface UseSampleSelectorSelectionReturn {\n  isAllSelected: ComputedRef<boolean>\n  toggleSelectAll: () => void\n  toggleSample: (sample: string) => void\n  toggleSamplesSelection: (samples: string[]) => void\n  isFullySelected: (samples: string[]) => boolean\n  isPartiallySelected: (samples: string[]) => boolean\n}\n\n/**\n * Selection state for the sample selector. Works on plain sample arrays rather\n * than group names, so any level of the group hierarchy can drive it by handing\n * over the samples beneath that node.\n */\nexport function useSampleSelectorSelection(\n  options: UseSampleSelectorSelectionOptions,\n): UseSampleSelectorSelectionReturn {\n  const sampleSelection = useListSelection({\n    selected: options.selected,\n    items: options.samples,\n  })\n\n  function emitSelection(samples: string[]) {\n    options.emitSelected(samples)\n  }\n\n  function toggleSelectAll() {\n    emitSelection(sampleSelection.toggleAll())\n  }\n\n  function toggleSample(sample: string) {\n    emitSelection(sampleSelection.toggleValue(sample))\n  }\n\n  function toggleSamplesSelection(samples: string[]) {\n    emitSelection(sampleSelection.toggleValues(samples))\n  }\n\n  function isFullySelected(samples: string[]): boolean {\n    return sampleSelection.isFullySelected(samples)\n  }\n\n  function isPartiallySelected(samples: string[]): boolean {\n    return sampleSelection.isPartiallySelected(samples)\n  }\n\n  return {\n    isAllSelected: sampleSelection.isAllSelected,\n    toggleSelectAll,\n    toggleSample,\n    toggleSamplesSelection,\n    isFullySelected,\n    isPartiallySelected,\n  }\n}\n","<script setup lang=\"ts\">\n/** Interactive sample list with drag-and-drop group assignment, color labeling, and smart-group support. */\nimport { ref, computed } from 'vue'\nimport { Layers, RotateCcw, WandSparkles } from 'lucide-vue-next'\nimport BaseButton from './BaseButton.vue'\nimport BaseCheckbox from './BaseCheckbox.vue'\nimport BaseInput from './BaseInput.vue'\nimport AutoGroupModalInternal from './internal/AutoGroupModalInternal.vue'\nimport SampleSelectorSampleRow from './SampleSelectorSampleRow.vue'\nimport SampleSelectorGroupNode from './SampleSelectorGroupNode.vue'\nimport { collectNodeKeys, type SampleGroupTreeContext } from './SampleSelector.tree'\nimport type { SampleGroup } from '../types'\nimport type { AutoGroupResult } from '../types/auto-group'\nimport { useTextSearch } from '../composables/useTextSearch'\nimport { useSampleGroups } from '../composables/useSampleGroups'\nimport { useExpansionSet } from '../composables/useExpansionSet'\nimport { useExperimentSamples } from '../composables/useExperimentSamples'\nimport { useSampleSelectorDrag } from './SampleSelector.drag'\nimport { useSampleSelectorSelection } from './SampleSelector.selection'\nimport {\n  applySampleGroupColorEdit,\n  createSampleGroup,\n  getSampleGroupColorEditSeed,\n  type ColorEdit,\n} from './SampleSelector.colors'\nimport {\n  removeSampleFromGroup as removeSampleFromSampleGroup,\n  removeSampleGroups,\n} from './SampleSelector.groups'\nimport DataStateInternal from './internal/DataStateInternal.vue'\n\ninterface Props {\n  samples?: string[]\n  modelValue: string[]\n  groups?: SampleGroup[]\n  enableGrouping?: boolean\n  enableSmartGroup?: boolean\n  experimentId?: number\n  designData?: Record<string, unknown>\n  autoloadExperimentData?: boolean\n  /** Replace the selector body with a loading placeholder. */\n  loading?: boolean\n  /**\n   * Error message. When set, the selector body is replaced by an error state.\n   * `null`/`undefined` renders normally.\n   */\n  error?: string | null\n  /** Empty-state headline shown when there are no samples to select from. */\n  emptyText?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  samples: () => [],\n  groups: () => [],\n  enableGrouping: true,\n  enableSmartGroup: true,\n  experimentId: undefined,\n  designData: undefined,\n  autoloadExperimentData: true,\n  loading: false,\n  error: null,\n  emptyText: 'No samples available',\n})\n\nconst emit = defineEmits<{\n  'update:modelValue': [samples: string[]]\n  'update:groups': [groups: SampleGroup[]]\n  smartGroup: [result: AutoGroupResult]\n}>()\n\n// UI State\nconst showSmartGroupModal = ref(false)\nconst groupingModalMode = ref<'auto' | 'manual'>('auto')\nconst newGroupName = ref('')\nconst editingColor = ref<ColorEdit | null>(null)\nconst colorPickerInput = ref<HTMLInputElement | null>(null)\nconst searchQuery = ref('')\nconst groupExpansion = useExpansionSet()\n\n// Computed: groups from props\nconst internalGroups = computed({\n  get: () => props.groups,\n  set: (value) => emit('update:groups', value),\n})\n\nconst {\n  announcement: reorderAnnouncement,\n  announcerStyle,\n  draggingSample,\n  dragOverGroup,\n  draggingGroup,\n  draggingGroupKind,\n  reorderTarget,\n  reorderPosition,\n  handleDragStart,\n  handleDragEnd,\n  handleDragOver,\n  handleDragLeave,\n  handleDrop,\n  handleGroupDragStart,\n  handleGroupReorderKeydown,\n  handleGroupDragEnd,\n  handleGroupDragOver,\n  handleGroupDragLeave,\n  handleGroupDrop,\n} = useSampleSelectorDrag(internalGroups)\n\nconst providedSamples = computed(() => props.samples)\nconst shouldLoadExperimentSamples = computed(() =>\n  props.autoloadExperimentData && providedSamples.value.length === 0,\n)\nconst experimentSamples = useExperimentSamples({\n  experimentId: () => props.experimentId,\n  designData: () => props.designData,\n  enabled: shouldLoadExperimentSamples,\n})\nconst resolvedSamples = computed(() =>\n  providedSamples.value.length > 0 ? providedSamples.value : experimentSamples.samples.value,\n)\nconst resolvedExperimentId = computed(() => props.experimentId ?? experimentSamples.experimentId.value)\nconst resolvedDesignData = computed(() => props.designData ?? experimentSamples.designData.value ?? undefined)\n\nconst sampleGroups = useSampleGroups({\n  samples: () => resolvedSamples.value,\n  groups: internalGroups,\n})\nconst groupTree = sampleGroups.groupTree\n\nconst groupingEnabled = computed(() => internalGroups.value.length > 0)\nconst ungroupedSamples = sampleGroups.ungroupedSamples\nconst groupingActionMode = computed<'auto' | 'manual'>(() => props.enableSmartGroup ? 'auto' : 'manual')\n\nconst sampleSearch = useTextSearch({\n  items: () => resolvedSamples.value,\n  query: searchQuery,\n  getText: sample => sample,\n})\nconst filteredSamples = sampleSearch.filteredItems\n\nconst {\n  isAllSelected,\n  toggleSelectAll,\n  toggleSample,\n  toggleSamplesSelection,\n  isFullySelected,\n  isPartiallySelected,\n} = useSampleSelectorSelection({\n  selected: () => props.modelValue,\n  samples: () => resolvedSamples.value,\n  emitSelected: samples => emit('update:modelValue', samples),\n})\n\n// Expand/collapse\nfunction toggleGroupExpanded(groupName: string) {\n  groupExpansion.toggle(groupName)\n}\n\nfunction isGroupExpanded(groupName: string): boolean {\n  return groupExpansion.isExpanded(groupName)\n}\n\nfunction expandAllGroups() {\n  groupExpansion.setExpanded([...collectNodeKeys(groupTree.value), '__ungrouped__'])\n}\n\nfunction collapseAllGroups() {\n  groupExpansion.collapseAll()\n}\n\n// Smart group\nfunction handleSmartGroupApply(result: AutoGroupResult) {\n  emit('smartGroup', result)\n  emit('update:groups', result.groups)\n}\n\nfunction openGroupingModal(mode: 'auto' | 'manual') {\n  groupingModalMode.value = mode\n  showSmartGroupModal.value = true\n}\n\n// Group management\nfunction clearGroups() {\n  internalGroups.value = []\n}\n\nfunction deleteGroups(groupNames: string[]) {\n  internalGroups.value = removeSampleGroups(internalGroups.value, groupNames)\n}\n\nfunction removeSampleFromGroup(sample: string, groupName: string) {\n  internalGroups.value = removeSampleFromSampleGroup(internalGroups.value, sample, groupName)\n}\n\n// Color picker\nfunction openColorPicker(groupNames: string[], event: Event) {\n  event.stopPropagation()\n  editingColor.value = groupNames.length === 1\n    ? { kind: 'single', name: groupNames[0] }\n    : { kind: 'family', names: groupNames }\n  colorPickerInput.value?.click()\n}\n\nfunction handleColorChange(event: Event) {\n  const edit = editingColor.value\n  if (!edit) return\n\n  const newColor = (event.target as HTMLInputElement).value\n  internalGroups.value = applySampleGroupColorEdit(internalGroups.value, edit, newColor)\n  editingColor.value = null\n}\n\nfunction getGroupColor(groupName: string): string {\n  return sampleGroups.getGroupColor(groupName)\n}\n\nconst colorPickerSeed = computed(() => {\n  return getSampleGroupColorEditSeed(editingColor.value, getGroupColor)\n})\n\n// Bundle of handlers handed to every level of the recursive group tree.\nconst treeContext = computed<SampleGroupTreeContext>(() => ({\n  isExpanded: isGroupExpanded,\n  toggleExpanded: toggleGroupExpanded,\n  isSampleSelected: sample => props.modelValue.includes(sample),\n  isFullySelected,\n  isPartiallySelected,\n  toggleSamples: toggleSamplesSelection,\n  toggleSample,\n  removeGroups: deleteGroups,\n  removeSampleFromGroup,\n  openColorPicker,\n  draggingSample: () => draggingSample.value,\n  dragOverGroup: () => dragOverGroup.value,\n  draggingGroup: () => draggingGroup.value,\n  draggingGroupKind: () => draggingGroupKind.value,\n  reorderTarget: () => reorderTarget.value,\n  reorderPosition: () => reorderPosition.value,\n  onSampleDragStart: handleDragStart,\n  onSampleDragEnd: handleDragEnd,\n  onSampleDragOver: handleDragOver,\n  onSampleDragLeave: handleDragLeave,\n  onSampleDrop: handleDrop,\n  onGroupDragStart: handleGroupDragStart,\n  onGroupDragEnd: handleGroupDragEnd,\n  onGroupDragOver: handleGroupDragOver,\n  onGroupDragLeave: handleGroupDragLeave,\n  onGroupDrop: handleGroupDrop,\n  onGroupReorderKeydown: handleGroupReorderKeydown,\n}))\n\n// New group\nfunction addNewGroup() {\n  const newGroup = createSampleGroup(newGroupName.value, internalGroups.value)\n  if (!newGroup) return\n  internalGroups.value = [...internalGroups.value, newGroup]\n  newGroupName.value = ''\n}\n\nconst groupingLabel = computed(() => (props.enableSmartGroup ? 'Smart group' : 'Group'))\n\n/** Selected samples among the resolved list, for the select-all header. */\nconst selectedCount = computed(() => resolvedSamples.value.filter(s => props.modelValue.includes(s)).length)\n\n/** True while a loading, error or empty placeholder stands in for the body. */\nconst isPlaceholderState = computed(() =>\n  props.loading || Boolean(props.error) || resolvedSamples.value.length === 0,\n)\n\ndefineExpose({ handleSmartGroupApply })\n</script>\n\n<template>\n  <div class=\"mint-sample-selector\">\n    <div class=\"mint-sample-selector__header\">\n      <span class=\"mint-sample-selector__title\">Samples</span>\n      <!-- A narrow selector shows \"N sel.\"; screen readers keep \"N selected\". -->\n      <span class=\"mint-sample-selector__selected\">\n        <span class=\"mint-sample-selector__selected-full\">{{ selectedCount }} selected</span>\n        <span class=\"mint-sample-selector__selected-short\" aria-hidden=\"true\">{{ selectedCount }} sel.</span>\n      </span>\n      <div v-if=\"!isPlaceholderState && enableGrouping\" class=\"mint-sample-selector__header-actions\">\n        <BaseButton\n          variant=\"ghost\"\n          size=\"sm\"\n          :icon=\"enableSmartGroup ? WandSparkles : Layers\"\n          :title=\"groupingLabel\"\n          class=\"mint-sample-selector__action-btn mint-sample-selector__group-btn\"\n          @click=\"openGroupingModal(groupingActionMode)\"\n        >\n          {{ groupingLabel }}\n        </BaseButton>\n        <BaseButton\n          v-if=\"internalGroups.length > 0\"\n          variant=\"ghost\"\n          size=\"sm\"\n          :icon=\"RotateCcw\"\n          label=\"Clear all groups\"\n          class=\"mint-sample-selector__action-btn\"\n          @click=\"clearGroups\"\n        />\n      </div>\n    </div>\n\n    <div v-if=\"error\" class=\"mint-sample-selector__state\">\n      <slot name=\"error\" :error=\"error\">\n        <DataStateInternal state=\"error\" size=\"sm\" :title=\"error\" />\n      </slot>\n    </div>\n\n    <div v-else-if=\"loading\" class=\"mint-sample-selector__state\">\n      <slot name=\"loading\">\n        <DataStateInternal state=\"loading\" size=\"sm\" loading-label=\"Loading samples\" />\n      </slot>\n    </div>\n\n    <div v-else-if=\"resolvedSamples.length === 0\" class=\"mint-sample-selector__state\">\n      <slot name=\"empty\">\n        <DataStateInternal state=\"empty\" size=\"sm\" :title=\"emptyText\" />\n      </slot>\n    </div>\n\n    <!-- Select-all header row -->\n    <div\n      v-if=\"!isPlaceholderState\"\n      :class=\"['mint-sample-selector__select-all', { 'mint-sample-selector__select-all--grouped': groupingEnabled }]\"\n      @click=\"toggleSelectAll\"\n    >\n      <BaseCheckbox\n        :model-value=\"isAllSelected\"\n        :indeterminate=\"selectedCount > 0 && !isAllSelected\"\n        size=\"sm\"\n        aria-label=\"Select all samples\"\n        class=\"mint-sample-selector__checkbox\"\n        @click.stop\n        @update:model-value=\"toggleSelectAll\"\n      />\n      <span class=\"mint-sample-selector__select-all-label\">All samples</span>\n      <span class=\"mint-sample-selector__select-all-count\">{{ selectedCount }}/{{ resolvedSamples.length }}</span>\n    </div>\n\n    <!-- Grouped View -->\n    <div v-if=\"!isPlaceholderState && groupingEnabled\" class=\"mint-sample-selector__grouped\">\n      <!-- Groups Header -->\n      <div class=\"mint-sample-selector__groups-header\">\n        <span class=\"mint-sample-selector__groups-title\">Groups ({{ internalGroups.length }})</span>\n        <div class=\"mint-sample-selector__groups-controls\">\n          <button type=\"button\" class=\"mint-sample-selector__expand-btn\" @click=\"expandAllGroups\" title=\"Expand all\" aria-label=\"Expand all groups\">\n            <svg class=\"mint-sample-selector__expand-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n              <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M19 9l-7 7-7-7\" />\n            </svg>\n          </button>\n          <button type=\"button\" class=\"mint-sample-selector__expand-btn\" @click=\"collapseAllGroups\" title=\"Collapse all\" aria-label=\"Collapse all groups\">\n            <svg class=\"mint-sample-selector__expand-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n              <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n            </svg>\n          </button>\n        </div>\n      </div>\n\n      <!-- Hierarchical Tree -->\n      <div class=\"mint-sample-selector__tree\">\n        <SampleSelectorGroupNode\n          v-for=\"node in groupTree\"\n          :key=\"node.key\"\n          :node=\"node\"\n          :depth=\"0\"\n          :ctx=\"treeContext\"\n        />\n\n        <!-- Empty state -->\n        <div v-if=\"internalGroups.length === 0\" class=\"mint-sample-selector__hint\">\n          Click Smart to auto-group samples\n        </div>\n      </div>\n\n      <!-- Ungrouped Samples Section -->\n      <div v-if=\"ungroupedSamples.length > 0\" class=\"mint-sample-selector__ungrouped\">\n        <div\n          class=\"mint-sample-selector__ungrouped-header\"\n          @click=\"toggleGroupExpanded('__ungrouped__')\"\n        >\n          <svg\n            :class=\"[\n              'mint-sample-selector__chevron',\n              isGroupExpanded('__ungrouped__') ? 'mint-sample-selector__chevron--open' : '',\n            ]\"\n            fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n          >\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n          </svg>\n          <span class=\"mint-sample-selector__ungrouped-label\">Ungrouped</span>\n          <span class=\"mint-sample-selector__ungrouped-count\">{{ ungroupedSamples.length }}</span>\n        </div>\n\n        <Transition name=\"mint-collapse\">\n          <div\n            v-if=\"isGroupExpanded('__ungrouped__')\"\n            class=\"mint-sample-selector__ungrouped-list\"\n          >\n            <SampleSelectorSampleRow\n              v-for=\"sample in ungroupedSamples\"\n              :key=\"sample\"\n              :sample=\"sample\"\n              :selected=\"modelValue.includes(sample)\"\n              :dragging=\"draggingSample === sample\"\n              @dragstart=\"handleDragStart(sample, null, $event)\"\n              @dragend=\"handleDragEnd\"\n              @toggle=\"toggleSample(sample)\"\n            />\n          </div>\n        </Transition>\n      </div>\n\n      <!-- New Group Input -->\n      <div class=\"mint-sample-selector__new-group\">\n        <BaseInput\n          v-model=\"newGroupName\"\n          placeholder=\"New group name...\"\n          class=\"mint-sample-selector__new-group-input\"\n          @keyup.enter=\"addNewGroup\"\n        />\n        <BaseButton\n          variant=\"ghost\"\n          size=\"sm\"\n          :disabled=\"!newGroupName.trim()\"\n          class=\"mint-sample-selector__new-group-btn\"\n          @click=\"addNewGroup\"\n        >\n          Add\n        </BaseButton>\n      </div>\n\n      <!-- Hidden color picker input -->\n      <input\n        ref=\"colorPickerInput\"\n        type=\"color\"\n        class=\"mint-sample-selector__color-input\"\n        :value=\"colorPickerSeed\"\n        @change=\"handleColorChange\"\n      />\n    </div>\n\n    <!-- Flat View (when no groups) -->\n    <div v-if=\"!isPlaceholderState && !groupingEnabled\" class=\"mint-sample-selector__flat\">\n      <!-- Search -->\n      <div class=\"mint-sample-selector__search\">\n        <svg class=\"mint-sample-selector__search-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n          <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M21 21l-6-6m2-5a7 7 0 11-14 0 7 7 0 0114 0z\" />\n        </svg>\n        <input\n          v-model=\"searchQuery\"\n          type=\"text\"\n          placeholder=\"Search samples...\"\n          class=\"mint-sample-selector__search-input\"\n        />\n      </div>\n\n      <!-- Flat samples list -->\n      <div class=\"mint-sample-selector__flat-list\">\n        <div\n          v-for=\"sample in filteredSamples\"\n          :key=\"sample\"\n          class=\"mint-sample-selector__flat-item\"\n          :title=\"sample\"\n          :aria-label=\"`Sample: ${sample}`\"\n        >\n          <BaseCheckbox\n            :model-value=\"modelValue.includes(sample)\"\n            size=\"sm\"\n            :aria-label=\"`Select ${sample}`\"\n            class=\"mint-sample-selector__checkbox\"\n            @update:model-value=\"toggleSample(sample)\"\n          />\n          <span class=\"mint-sample-selector__flat-name\">{{ sample }}</span>\n        </div>\n\n        <div v-if=\"filteredSamples.length === 0 && searchQuery.trim()\" class=\"mint-sample-selector__hint\">\n          No samples match \"{{ searchQuery }}\"\n        </div>\n      </div>\n    </div>\n\n    <!-- Smart grouping modal -->\n    <AutoGroupModalInternal\n      v-model:open=\"showSmartGroupModal\"\n      :samples=\"resolvedSamples\"\n      :groups=\"internalGroups\"\n      :initial-mode=\"groupingModalMode\"\n      :experiment-id=\"resolvedExperimentId\"\n      :design-data=\"resolvedDesignData\"\n      @apply=\"handleSmartGroupApply\"\n    />\n\n    <!-- Group reorder announcements for screen readers -->\n    <div role=\"status\" aria-live=\"polite\" :style=\"announcerStyle\">{{ reorderAnnouncement }}</div>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Interactive sample list with drag-and-drop group assignment, color labeling, and smart-group support. */\nimport { ref, computed } from 'vue'\nimport { Layers, RotateCcw, WandSparkles } from 'lucide-vue-next'\nimport BaseButton from './BaseButton.vue'\nimport BaseCheckbox from './BaseCheckbox.vue'\nimport BaseInput from './BaseInput.vue'\nimport AutoGroupModalInternal from './internal/AutoGroupModalInternal.vue'\nimport SampleSelectorSampleRow from './SampleSelectorSampleRow.vue'\nimport SampleSelectorGroupNode from './SampleSelectorGroupNode.vue'\nimport { collectNodeKeys, type SampleGroupTreeContext } from './SampleSelector.tree'\nimport type { SampleGroup } from '../types'\nimport type { AutoGroupResult } from '../types/auto-group'\nimport { useTextSearch } from '../composables/useTextSearch'\nimport { useSampleGroups } from '../composables/useSampleGroups'\nimport { useExpansionSet } from '../composables/useExpansionSet'\nimport { useExperimentSamples } from '../composables/useExperimentSamples'\nimport { useSampleSelectorDrag } from './SampleSelector.drag'\nimport { useSampleSelectorSelection } from './SampleSelector.selection'\nimport {\n  applySampleGroupColorEdit,\n  createSampleGroup,\n  getSampleGroupColorEditSeed,\n  type ColorEdit,\n} from './SampleSelector.colors'\nimport {\n  removeSampleFromGroup as removeSampleFromSampleGroup,\n  removeSampleGroups,\n} from './SampleSelector.groups'\nimport DataStateInternal from './internal/DataStateInternal.vue'\n\ninterface Props {\n  samples?: string[]\n  modelValue: string[]\n  groups?: SampleGroup[]\n  enableGrouping?: boolean\n  enableSmartGroup?: boolean\n  experimentId?: number\n  designData?: Record<string, unknown>\n  autoloadExperimentData?: boolean\n  /** Replace the selector body with a loading placeholder. */\n  loading?: boolean\n  /**\n   * Error message. When set, the selector body is replaced by an error state.\n   * `null`/`undefined` renders normally.\n   */\n  error?: string | null\n  /** Empty-state headline shown when there are no samples to select from. */\n  emptyText?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  samples: () => [],\n  groups: () => [],\n  enableGrouping: true,\n  enableSmartGroup: true,\n  experimentId: undefined,\n  designData: undefined,\n  autoloadExperimentData: true,\n  loading: false,\n  error: null,\n  emptyText: 'No samples available',\n})\n\nconst emit = defineEmits<{\n  'update:modelValue': [samples: string[]]\n  'update:groups': [groups: SampleGroup[]]\n  smartGroup: [result: AutoGroupResult]\n}>()\n\n// UI State\nconst showSmartGroupModal = ref(false)\nconst groupingModalMode = ref<'auto' | 'manual'>('auto')\nconst newGroupName = ref('')\nconst editingColor = ref<ColorEdit | null>(null)\nconst colorPickerInput = ref<HTMLInputElement | null>(null)\nconst searchQuery = ref('')\nconst groupExpansion = useExpansionSet()\n\n// Computed: groups from props\nconst internalGroups = computed({\n  get: () => props.groups,\n  set: (value) => emit('update:groups', value),\n})\n\nconst {\n  announcement: reorderAnnouncement,\n  announcerStyle,\n  draggingSample,\n  dragOverGroup,\n  draggingGroup,\n  draggingGroupKind,\n  reorderTarget,\n  reorderPosition,\n  handleDragStart,\n  handleDragEnd,\n  handleDragOver,\n  handleDragLeave,\n  handleDrop,\n  handleGroupDragStart,\n  handleGroupReorderKeydown,\n  handleGroupDragEnd,\n  handleGroupDragOver,\n  handleGroupDragLeave,\n  handleGroupDrop,\n} = useSampleSelectorDrag(internalGroups)\n\nconst providedSamples = computed(() => props.samples)\nconst shouldLoadExperimentSamples = computed(() =>\n  props.autoloadExperimentData && providedSamples.value.length === 0,\n)\nconst experimentSamples = useExperimentSamples({\n  experimentId: () => props.experimentId,\n  designData: () => props.designData,\n  enabled: shouldLoadExperimentSamples,\n})\nconst resolvedSamples = computed(() =>\n  providedSamples.value.length > 0 ? providedSamples.value : experimentSamples.samples.value,\n)\nconst resolvedExperimentId = computed(() => props.experimentId ?? experimentSamples.experimentId.value)\nconst resolvedDesignData = computed(() => props.designData ?? experimentSamples.designData.value ?? undefined)\n\nconst sampleGroups = useSampleGroups({\n  samples: () => resolvedSamples.value,\n  groups: internalGroups,\n})\nconst groupTree = sampleGroups.groupTree\n\nconst groupingEnabled = computed(() => internalGroups.value.length > 0)\nconst ungroupedSamples = sampleGroups.ungroupedSamples\nconst groupingActionMode = computed<'auto' | 'manual'>(() => props.enableSmartGroup ? 'auto' : 'manual')\n\nconst sampleSearch = useTextSearch({\n  items: () => resolvedSamples.value,\n  query: searchQuery,\n  getText: sample => sample,\n})\nconst filteredSamples = sampleSearch.filteredItems\n\nconst {\n  isAllSelected,\n  toggleSelectAll,\n  toggleSample,\n  toggleSamplesSelection,\n  isFullySelected,\n  isPartiallySelected,\n} = useSampleSelectorSelection({\n  selected: () => props.modelValue,\n  samples: () => resolvedSamples.value,\n  emitSelected: samples => emit('update:modelValue', samples),\n})\n\n// Expand/collapse\nfunction toggleGroupExpanded(groupName: string) {\n  groupExpansion.toggle(groupName)\n}\n\nfunction isGroupExpanded(groupName: string): boolean {\n  return groupExpansion.isExpanded(groupName)\n}\n\nfunction expandAllGroups() {\n  groupExpansion.setExpanded([...collectNodeKeys(groupTree.value), '__ungrouped__'])\n}\n\nfunction collapseAllGroups() {\n  groupExpansion.collapseAll()\n}\n\n// Smart group\nfunction handleSmartGroupApply(result: AutoGroupResult) {\n  emit('smartGroup', result)\n  emit('update:groups', result.groups)\n}\n\nfunction openGroupingModal(mode: 'auto' | 'manual') {\n  groupingModalMode.value = mode\n  showSmartGroupModal.value = true\n}\n\n// Group management\nfunction clearGroups() {\n  internalGroups.value = []\n}\n\nfunction deleteGroups(groupNames: string[]) {\n  internalGroups.value = removeSampleGroups(internalGroups.value, groupNames)\n}\n\nfunction removeSampleFromGroup(sample: string, groupName: string) {\n  internalGroups.value = removeSampleFromSampleGroup(internalGroups.value, sample, groupName)\n}\n\n// Color picker\nfunction openColorPicker(groupNames: string[], event: Event) {\n  event.stopPropagation()\n  editingColor.value = groupNames.length === 1\n    ? { kind: 'single', name: groupNames[0] }\n    : { kind: 'family', names: groupNames }\n  colorPickerInput.value?.click()\n}\n\nfunction handleColorChange(event: Event) {\n  const edit = editingColor.value\n  if (!edit) return\n\n  const newColor = (event.target as HTMLInputElement).value\n  internalGroups.value = applySampleGroupColorEdit(internalGroups.value, edit, newColor)\n  editingColor.value = null\n}\n\nfunction getGroupColor(groupName: string): string {\n  return sampleGroups.getGroupColor(groupName)\n}\n\nconst colorPickerSeed = computed(() => {\n  return getSampleGroupColorEditSeed(editingColor.value, getGroupColor)\n})\n\n// Bundle of handlers handed to every level of the recursive group tree.\nconst treeContext = computed<SampleGroupTreeContext>(() => ({\n  isExpanded: isGroupExpanded,\n  toggleExpanded: toggleGroupExpanded,\n  isSampleSelected: sample => props.modelValue.includes(sample),\n  isFullySelected,\n  isPartiallySelected,\n  toggleSamples: toggleSamplesSelection,\n  toggleSample,\n  removeGroups: deleteGroups,\n  removeSampleFromGroup,\n  openColorPicker,\n  draggingSample: () => draggingSample.value,\n  dragOverGroup: () => dragOverGroup.value,\n  draggingGroup: () => draggingGroup.value,\n  draggingGroupKind: () => draggingGroupKind.value,\n  reorderTarget: () => reorderTarget.value,\n  reorderPosition: () => reorderPosition.value,\n  onSampleDragStart: handleDragStart,\n  onSampleDragEnd: handleDragEnd,\n  onSampleDragOver: handleDragOver,\n  onSampleDragLeave: handleDragLeave,\n  onSampleDrop: handleDrop,\n  onGroupDragStart: handleGroupDragStart,\n  onGroupDragEnd: handleGroupDragEnd,\n  onGroupDragOver: handleGroupDragOver,\n  onGroupDragLeave: handleGroupDragLeave,\n  onGroupDrop: handleGroupDrop,\n  onGroupReorderKeydown: handleGroupReorderKeydown,\n}))\n\n// New group\nfunction addNewGroup() {\n  const newGroup = createSampleGroup(newGroupName.value, internalGroups.value)\n  if (!newGroup) return\n  internalGroups.value = [...internalGroups.value, newGroup]\n  newGroupName.value = ''\n}\n\nconst groupingLabel = computed(() => (props.enableSmartGroup ? 'Smart group' : 'Group'))\n\n/** Selected samples among the resolved list, for the select-all header. */\nconst selectedCount = computed(() => resolvedSamples.value.filter(s => props.modelValue.includes(s)).length)\n\n/** True while a loading, error or empty placeholder stands in for the body. */\nconst isPlaceholderState = computed(() =>\n  props.loading || Boolean(props.error) || resolvedSamples.value.length === 0,\n)\n\ndefineExpose({ handleSmartGroupApply })\n</script>\n\n<template>\n  <div class=\"mint-sample-selector\">\n    <div class=\"mint-sample-selector__header\">\n      <span class=\"mint-sample-selector__title\">Samples</span>\n      <!-- A narrow selector shows \"N sel.\"; screen readers keep \"N selected\". -->\n      <span class=\"mint-sample-selector__selected\">\n        <span class=\"mint-sample-selector__selected-full\">{{ selectedCount }} selected</span>\n        <span class=\"mint-sample-selector__selected-short\" aria-hidden=\"true\">{{ selectedCount }} sel.</span>\n      </span>\n      <div v-if=\"!isPlaceholderState && enableGrouping\" class=\"mint-sample-selector__header-actions\">\n        <BaseButton\n          variant=\"ghost\"\n          size=\"sm\"\n          :icon=\"enableSmartGroup ? WandSparkles : Layers\"\n          :title=\"groupingLabel\"\n          class=\"mint-sample-selector__action-btn mint-sample-selector__group-btn\"\n          @click=\"openGroupingModal(groupingActionMode)\"\n        >\n          {{ groupingLabel }}\n        </BaseButton>\n        <BaseButton\n          v-if=\"internalGroups.length > 0\"\n          variant=\"ghost\"\n          size=\"sm\"\n          :icon=\"RotateCcw\"\n          label=\"Clear all groups\"\n          class=\"mint-sample-selector__action-btn\"\n          @click=\"clearGroups\"\n        />\n      </div>\n    </div>\n\n    <div v-if=\"error\" class=\"mint-sample-selector__state\">\n      <slot name=\"error\" :error=\"error\">\n        <DataStateInternal state=\"error\" size=\"sm\" :title=\"error\" />\n      </slot>\n    </div>\n\n    <div v-else-if=\"loading\" class=\"mint-sample-selector__state\">\n      <slot name=\"loading\">\n        <DataStateInternal state=\"loading\" size=\"sm\" loading-label=\"Loading samples\" />\n      </slot>\n    </div>\n\n    <div v-else-if=\"resolvedSamples.length === 0\" class=\"mint-sample-selector__state\">\n      <slot name=\"empty\">\n        <DataStateInternal state=\"empty\" size=\"sm\" :title=\"emptyText\" />\n      </slot>\n    </div>\n\n    <!-- Select-all header row -->\n    <div\n      v-if=\"!isPlaceholderState\"\n      :class=\"['mint-sample-selector__select-all', { 'mint-sample-selector__select-all--grouped': groupingEnabled }]\"\n      @click=\"toggleSelectAll\"\n    >\n      <BaseCheckbox\n        :model-value=\"isAllSelected\"\n        :indeterminate=\"selectedCount > 0 && !isAllSelected\"\n        size=\"sm\"\n        aria-label=\"Select all samples\"\n        class=\"mint-sample-selector__checkbox\"\n        @click.stop\n        @update:model-value=\"toggleSelectAll\"\n      />\n      <span class=\"mint-sample-selector__select-all-label\">All samples</span>\n      <span class=\"mint-sample-selector__select-all-count\">{{ selectedCount }}/{{ resolvedSamples.length }}</span>\n    </div>\n\n    <!-- Grouped View -->\n    <div v-if=\"!isPlaceholderState && groupingEnabled\" class=\"mint-sample-selector__grouped\">\n      <!-- Groups Header -->\n      <div class=\"mint-sample-selector__groups-header\">\n        <span class=\"mint-sample-selector__groups-title\">Groups ({{ internalGroups.length }})</span>\n        <div class=\"mint-sample-selector__groups-controls\">\n          <button type=\"button\" class=\"mint-sample-selector__expand-btn\" @click=\"expandAllGroups\" title=\"Expand all\" aria-label=\"Expand all groups\">\n            <svg class=\"mint-sample-selector__expand-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n              <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M19 9l-7 7-7-7\" />\n            </svg>\n          </button>\n          <button type=\"button\" class=\"mint-sample-selector__expand-btn\" @click=\"collapseAllGroups\" title=\"Collapse all\" aria-label=\"Collapse all groups\">\n            <svg class=\"mint-sample-selector__expand-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n              <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n            </svg>\n          </button>\n        </div>\n      </div>\n\n      <!-- Hierarchical Tree -->\n      <div class=\"mint-sample-selector__tree\">\n        <SampleSelectorGroupNode\n          v-for=\"node in groupTree\"\n          :key=\"node.key\"\n          :node=\"node\"\n          :depth=\"0\"\n          :ctx=\"treeContext\"\n        />\n\n        <!-- Empty state -->\n        <div v-if=\"internalGroups.length === 0\" class=\"mint-sample-selector__hint\">\n          Click Smart to auto-group samples\n        </div>\n      </div>\n\n      <!-- Ungrouped Samples Section -->\n      <div v-if=\"ungroupedSamples.length > 0\" class=\"mint-sample-selector__ungrouped\">\n        <div\n          class=\"mint-sample-selector__ungrouped-header\"\n          @click=\"toggleGroupExpanded('__ungrouped__')\"\n        >\n          <svg\n            :class=\"[\n              'mint-sample-selector__chevron',\n              isGroupExpanded('__ungrouped__') ? 'mint-sample-selector__chevron--open' : '',\n            ]\"\n            fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\"\n          >\n            <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n          </svg>\n          <span class=\"mint-sample-selector__ungrouped-label\">Ungrouped</span>\n          <span class=\"mint-sample-selector__ungrouped-count\">{{ ungroupedSamples.length }}</span>\n        </div>\n\n        <Transition name=\"mint-collapse\">\n          <div\n            v-if=\"isGroupExpanded('__ungrouped__')\"\n            class=\"mint-sample-selector__ungrouped-list\"\n          >\n            <SampleSelectorSampleRow\n              v-for=\"sample in ungroupedSamples\"\n              :key=\"sample\"\n              :sample=\"sample\"\n              :selected=\"modelValue.includes(sample)\"\n              :dragging=\"draggingSample === sample\"\n              @dragstart=\"handleDragStart(sample, null, $event)\"\n              @dragend=\"handleDragEnd\"\n              @toggle=\"toggleSample(sample)\"\n            />\n          </div>\n        </Transition>\n      </div>\n\n      <!-- New Group Input -->\n      <div class=\"mint-sample-selector__new-group\">\n        <BaseInput\n          v-model=\"newGroupName\"\n          placeholder=\"New group name...\"\n          class=\"mint-sample-selector__new-group-input\"\n          @keyup.enter=\"addNewGroup\"\n        />\n        <BaseButton\n          variant=\"ghost\"\n          size=\"sm\"\n          :disabled=\"!newGroupName.trim()\"\n          class=\"mint-sample-selector__new-group-btn\"\n          @click=\"addNewGroup\"\n        >\n          Add\n        </BaseButton>\n      </div>\n\n      <!-- Hidden color picker input -->\n      <input\n        ref=\"colorPickerInput\"\n        type=\"color\"\n        class=\"mint-sample-selector__color-input\"\n        :value=\"colorPickerSeed\"\n        @change=\"handleColorChange\"\n      />\n    </div>\n\n    <!-- Flat View (when no groups) -->\n    <div v-if=\"!isPlaceholderState && !groupingEnabled\" class=\"mint-sample-selector__flat\">\n      <!-- Search -->\n      <div class=\"mint-sample-selector__search\">\n        <svg class=\"mint-sample-selector__search-icon\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n          <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M21 21l-6-6m2-5a7 7 0 11-14 0 7 7 0 0114 0z\" />\n        </svg>\n        <input\n          v-model=\"searchQuery\"\n          type=\"text\"\n          placeholder=\"Search samples...\"\n          class=\"mint-sample-selector__search-input\"\n        />\n      </div>\n\n      <!-- Flat samples list -->\n      <div class=\"mint-sample-selector__flat-list\">\n        <div\n          v-for=\"sample in filteredSamples\"\n          :key=\"sample\"\n          class=\"mint-sample-selector__flat-item\"\n          :title=\"sample\"\n          :aria-label=\"`Sample: ${sample}`\"\n        >\n          <BaseCheckbox\n            :model-value=\"modelValue.includes(sample)\"\n            size=\"sm\"\n            :aria-label=\"`Select ${sample}`\"\n            class=\"mint-sample-selector__checkbox\"\n            @update:model-value=\"toggleSample(sample)\"\n          />\n          <span class=\"mint-sample-selector__flat-name\">{{ sample }}</span>\n        </div>\n\n        <div v-if=\"filteredSamples.length === 0 && searchQuery.trim()\" class=\"mint-sample-selector__hint\">\n          No samples match \"{{ searchQuery }}\"\n        </div>\n      </div>\n    </div>\n\n    <!-- Smart grouping modal -->\n    <AutoGroupModalInternal\n      v-model:open=\"showSmartGroupModal\"\n      :samples=\"resolvedSamples\"\n      :groups=\"internalGroups\"\n      :initial-mode=\"groupingModalMode\"\n      :experiment-id=\"resolvedExperimentId\"\n      :design-data=\"resolvedDesignData\"\n      @apply=\"handleSmartGroupApply\"\n    />\n\n    <!-- Group reorder announcements for screen readers -->\n    <div role=\"status\" aria-live=\"polite\" :style=\"announcerStyle\">{{ reorderAnnouncement }}</div>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Collapsible tree visualizing the biological sample hierarchy (study → experiment → plate → sample → cell line → passage → clone → treatment). */\nimport { h, Transition, useId, type VNode } from 'vue'\nimport type { TreeNodeType, BadgeVariant, TreeNode } from '../types'\nimport { useExpansionSet } from '../composables/useExpansionSet'\nimport DataStateInternal from './internal/DataStateInternal.vue'\n\n/** Folder glyph kept from the pre-1.2 hand-rolled empty state. */\nconst EMPTY_ICON_PATH\n  = 'M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z'\n\ninterface Props {\n  nodes: TreeNode[]\n  defaultExpandedIds?: string[]\n  expandAll?: boolean\n  showIcons?: boolean\n  showCounts?: boolean\n  maxDepth?: number\n  size?: 'sm' | 'md' | 'lg'\n  /** Replace the tree with a loading placeholder. */\n  loading?: boolean\n  /**\n   * Error message. When set, the tree is replaced by an error state.\n   * `null`/`undefined` renders normally.\n   */\n  error?: string | null\n  /**\n   * Selected node id; bind it with v-model on selected-id. Binding it, even to\n   * `null`, turns on selection. The matching row is highlighted, rows take\n   * keyboard focus and Enter or Space selects. Left unbound, rows are not selectable.\n   */\n  selectedId?: string | null\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  defaultExpandedIds: () => [],\n  expandAll: false,\n  showIcons: true,\n  showCounts: true,\n  size: 'md',\n  loading: false,\n  error: null,\n})\n\nconst emit = defineEmits<{\n  'node-click': [node: TreeNode]\n  'expand': [nodeId: string]\n  'collapse': [nodeId: string]\n  'update:selectedId': [nodeId: string]\n}>()\n\n// Default icons by type (Lucide SVG paths - arrays to support multi-path icons)\ninterface IconElement {\n  tag: 'path' | 'circle' | 'rect'\n  attrs: Record<string, string | number>\n}\n\nconst typeIcons: Record<TreeNodeType, IconElement[]> = {\n  study: [\n    { tag: 'path', attrs: { d: 'M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z' } },\n  ],\n  experiment: [\n    { tag: 'path', attrs: { d: 'M14 2v6a2 2 0 0 0 .245.96l5.51 10.08A2 2 0 0 1 18 22H6a2 2 0 0 1-1.755-2.96l5.51-10.08A2 2 0 0 0 10 8V2' } },\n    { tag: 'path', attrs: { d: 'M6.453 15h11.094' } },\n    { tag: 'path', attrs: { d: 'M8.5 2h7' } },\n  ],\n  plate: [\n    { tag: 'rect', attrs: { width: '7', height: '7', x: '3', y: '3', rx: '1' } },\n    { tag: 'rect', attrs: { width: '7', height: '7', x: '14', y: '3', rx: '1' } },\n    { tag: 'rect', attrs: { width: '7', height: '7', x: '14', y: '14', rx: '1' } },\n    { tag: 'rect', attrs: { width: '7', height: '7', x: '3', y: '14', rx: '1' } },\n  ],\n  sample: [\n    { tag: 'path', attrs: { d: 'M14.5 2v17.5c0 1.4-1.1 2.5-2.5 2.5c-1.4 0-2.5-1.1-2.5-2.5V2' } },\n    { tag: 'path', attrs: { d: 'M8.5 2h7' } },\n    { tag: 'path', attrs: { d: 'M14.5 16h-5' } },\n  ],\n  cell_line: [\n    { tag: 'circle', attrs: { cx: '12', cy: '12', r: '10' } },\n    { tag: 'circle', attrs: { cx: '12', cy: '12', r: '3' } },\n  ],\n  passage: [\n    { tag: 'path', attrs: { d: 'M3 5h.01' } },\n    { tag: 'path', attrs: { d: 'M3 12h.01' } },\n    { tag: 'path', attrs: { d: 'M3 19h.01' } },\n    { tag: 'path', attrs: { d: 'M8 5h13' } },\n    { tag: 'path', attrs: { d: 'M8 12h13' } },\n    { tag: 'path', attrs: { d: 'M8 19h13' } },\n  ],\n  clone: [\n    { tag: 'rect', attrs: { width: '14', height: '14', x: '8', y: '8', rx: '2', ry: '2' } },\n    { tag: 'path', attrs: { d: 'M4 16c-1.1 0-2-.9-2-2V4c0-1.1.9-2 2-2h10c1.1 0 2 .9 2 2' } },\n  ],\n  treatment: [\n    { tag: 'path', attrs: { d: 'm18 2 4 4' } },\n    { tag: 'path', attrs: { d: 'm17 7 3-3' } },\n    { tag: 'path', attrs: { d: 'M19 9 8.7 19.3c-1 1-2.5 1-3.4 0l-.6-.6c-1-1-1-2.5 0-3.4L15 5' } },\n    { tag: 'path', attrs: { d: 'm9 11 4 4' } },\n    { tag: 'path', attrs: { d: 'm5 19-3 3' } },\n    { tag: 'path', attrs: { d: 'm14 4 6 6' } },\n  ],\n  folder: [\n    { tag: 'path', attrs: { d: 'M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z' } },\n  ],\n  custom: [\n    { tag: 'path', attrs: { d: 'M9.671 4.136a2.34 2.34 0 0 1 4.659 0 2.34 2.34 0 0 0 3.319 1.915 2.34 2.34 0 0 1 2.33 4.033 2.34 2.34 0 0 0 0 3.831 2.34 2.34 0 0 1-2.33 4.033 2.34 2.34 0 0 0-3.319 1.915 2.34 2.34 0 0 1-4.659 0 2.34 2.34 0 0 0-3.32-1.915 2.34 2.34 0 0 1-2.33-4.033 2.34 2.34 0 0 0 0-3.831A2.34 2.34 0 0 1 6.35 6.051a2.34 2.34 0 0 0 3.319-1.915' } },\n    { tag: 'circle', attrs: { cx: '12', cy: '12', r: '3' } },\n  ],\n}\n\n// Collect all node IDs for expand all\nfunction collectAllIds(nodes: TreeNode[]): string[] {\n  const ids: string[] = []\n  function traverse(node: TreeNode) {\n    ids.push(node.id)\n    if (node.children) {\n      node.children.forEach(traverse)\n    }\n  }\n  nodes.forEach(traverse)\n  return ids\n}\n\nconst expansion = useExpansionSet({\n  defaultIds: () => props.defaultExpandedIds,\n  allIds: () => collectAllIds(props.nodes),\n  expandAll: () => props.expandAll,\n})\n\nfunction isExpanded(nodeId: string): boolean {\n  return expansion.isExpanded(nodeId)\n}\n\nfunction toggleExpand(node: TreeNode) {\n  const expanded = expansion.toggle(node.id)\n  if (expanded) {\n    emit('expand', node.id)\n  } else {\n    emit('collapse', node.id)\n  }\n}\n\nfunction handleNodeClick(node: TreeNode) {\n  emit('node-click', node)\n  emit('update:selectedId', node.id)\n}\n\nfunction handleHeaderKeydown(event: KeyboardEvent, node: TreeNode) {\n  // Keys pressed on the nested expand toggle belong to the toggle.\n  if (props.selectedId === undefined || event.target !== event.currentTarget) return\n  if (event.key !== 'Enter' && event.key !== ' ') return\n  event.preventDefault()\n  handleNodeClick(node)\n}\n\nfunction getIconElements(node: TreeNode): IconElement[] {\n  if (node.icon) return [{ tag: 'path', attrs: { d: node.icon } }]\n  return typeIcons[node.type || 'custom']\n}\n\nfunction getBadgeContent(node: TreeNode): string | number | undefined {\n  if (node.badge !== undefined) return node.badge\n  if (props.showCounts && node.children && node.children.length > 0) {\n    return node.children.length\n  }\n  return undefined\n}\n\nfunction getBadgeVariant(node: TreeNode): BadgeVariant {\n  return node.badgeVariant || 'default'\n}\n\nfunction hasChildren(node: TreeNode): boolean {\n  return !!node.children && node.children.length > 0\n}\n\nfunction canShowChildren(node: TreeNode, depth: number): boolean {\n  if (!hasChildren(node)) return false\n  if (props.maxDepth !== undefined && depth >= props.maxDepth) return false\n  return isExpanded(node.id)\n}\n\nconst treeId = useId()\n\n// Render tree node recursively\nfunction renderNode(node: TreeNode, depth: number): VNode {\n  const children = node.children\n  const expanded = isExpanded(node.id)\n  const canExpand = hasChildren(node)\n  const showChildNodes = canShowChildren(node, depth)\n  const badge = getBadgeContent(node)\n  const badgeVar = getBadgeVariant(node)\n  const iconElements = getIconElements(node)\n  const selectable = props.selectedId !== undefined\n  const selected = selectable && props.selectedId === node.id\n  // The child group sits beside the header, so the header treeitem claims it with aria-owns.\n  const groupId = `${treeId}-group-${encodeURIComponent(node.id)}`\n\n  const header = h(\n    'div',\n    {\n      class: ['mint-sample-tree__node-header', selected ? 'mint-sample-tree__node-header--selected' : ''],\n      // The focusable header is the treeitem, so its selected state is announced on focus.\n      role: 'treeitem',\n      'aria-expanded': canExpand ? expanded : undefined,\n      'aria-selected': selectable ? selected : undefined,\n      'aria-owns': showChildNodes ? groupId : undefined,\n      tabindex: selectable ? 0 : undefined,\n      onClick: () => handleNodeClick(node),\n      onKeydown: (e: KeyboardEvent) => handleHeaderKeydown(e, node),\n    },\n    [\n      canExpand\n        ? h(\n            'button',\n            {\n              type: 'button',\n              class: 'mint-sample-tree__toggle',\n              'aria-label': expanded ? 'Collapse' : 'Expand',\n              onClick: (e: Event) => {\n                e.stopPropagation()\n                toggleExpand(node)\n              },\n            },\n            [\n              h('svg', { fill: 'none', stroke: 'currentColor', viewBox: '0 0 24 24', 'stroke-width': '2', 'stroke-linecap': 'round', 'stroke-linejoin': 'round' }, [\n                h('path', { d: 'm9 18 6-6-6-6' }),\n              ]),\n            ]\n          )\n        : h('span', { class: 'mint-sample-tree__toggle-placeholder' }),\n      props.showIcons\n        ? h('span', { class: ['mint-sample-tree__icon', `mint-sample-tree__icon--${node.type || 'custom'}`] }, [\n            h('svg', { fill: 'none', stroke: 'currentColor', viewBox: '0 0 24 24', 'stroke-width': '2', 'stroke-linecap': 'round', 'stroke-linejoin': 'round' },\n              iconElements.map(el => h(el.tag, el.attrs))\n            ),\n          ])\n        : null,\n      h('span', { class: ['mint-sample-tree__label', `mint-sample-tree__label--${node.type || 'custom'}`] }, node.label),\n      badge !== undefined\n        ? h('span', { class: ['mint-sample-tree__badge', `mint-sample-tree__badge--${badgeVar}`] }, String(badge))\n        : null,\n    ]\n  )\n\n  const childNodes =\n    showChildNodes && children\n      ? h(\n          Transition,\n          { enterActiveClass: 'mint-sample-tree__children--entering', leaveActiveClass: 'mint-sample-tree__children--leaving' },\n          // The inner wrapper is the single grid row the 0fr → 1fr expand animates (4c).\n          () => h('div', { id: groupId, class: 'mint-sample-tree__children', role: 'group' }, [\n            h('div', { class: 'mint-sample-tree__children-inner' }, children.map((child) => renderNode(child, depth + 1))),\n          ])\n        )\n      : null\n\n  return h(\n    'div',\n    {\n      key: node.id,\n      class: ['mint-sample-tree__node', expanded ? 'mint-sample-tree__node--expanded' : '', !canExpand ? 'mint-sample-tree__node--leaf' : ''],\n    },\n    [header, childNodes]\n  )\n}\n\n// Render the entire tree\nfunction renderTree(): VNode[] {\n  return props.nodes.map((node) => renderNode(node, 0))\n}\n</script>\n\n<template>\n  <div :class=\"['mint-sample-tree', `mint-sample-tree--${size}`]\" role=\"tree\">\n    <!-- Error state -->\n    <div v-if=\"error\" class=\"mint-sample-tree__state\">\n      <slot name=\"error\" :error=\"error\">\n        <DataStateInternal state=\"error\" size=\"sm\" :title=\"error\" />\n      </slot>\n    </div>\n\n    <!-- Loading state -->\n    <div v-else-if=\"loading\" class=\"mint-sample-tree__state\">\n      <slot name=\"loading\">\n        <DataStateInternal state=\"loading\" size=\"sm\" loading-label=\"Loading samples\" />\n      </slot>\n    </div>\n\n    <!-- Empty state -->\n    <div v-else-if=\"nodes.length === 0\" class=\"mint-sample-tree__state\">\n      <slot name=\"empty\">\n        <DataStateInternal state=\"empty\" size=\"sm\" title=\"No items\" :icon-path=\"EMPTY_ICON_PATH\" />\n      </slot>\n    </div>\n\n    <!-- Tree nodes rendered via render function -->\n    <template v-else>\n      <component :is=\"() => renderTree()\" />\n    </template>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Collapsible tree visualizing the biological sample hierarchy (study → experiment → plate → sample → cell line → passage → clone → treatment). */\nimport { h, Transition, useId, type VNode } from 'vue'\nimport type { TreeNodeType, BadgeVariant, TreeNode } from '../types'\nimport { useExpansionSet } from '../composables/useExpansionSet'\nimport DataStateInternal from './internal/DataStateInternal.vue'\n\n/** Folder glyph kept from the pre-1.2 hand-rolled empty state. */\nconst EMPTY_ICON_PATH\n  = 'M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z'\n\ninterface Props {\n  nodes: TreeNode[]\n  defaultExpandedIds?: string[]\n  expandAll?: boolean\n  showIcons?: boolean\n  showCounts?: boolean\n  maxDepth?: number\n  size?: 'sm' | 'md' | 'lg'\n  /** Replace the tree with a loading placeholder. */\n  loading?: boolean\n  /**\n   * Error message. When set, the tree is replaced by an error state.\n   * `null`/`undefined` renders normally.\n   */\n  error?: string | null\n  /**\n   * Selected node id; bind it with v-model on selected-id. Binding it, even to\n   * `null`, turns on selection. The matching row is highlighted, rows take\n   * keyboard focus and Enter or Space selects. Left unbound, rows are not selectable.\n   */\n  selectedId?: string | null\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  defaultExpandedIds: () => [],\n  expandAll: false,\n  showIcons: true,\n  showCounts: true,\n  size: 'md',\n  loading: false,\n  error: null,\n})\n\nconst emit = defineEmits<{\n  'node-click': [node: TreeNode]\n  'expand': [nodeId: string]\n  'collapse': [nodeId: string]\n  'update:selectedId': [nodeId: string]\n}>()\n\n// Default icons by type (Lucide SVG paths - arrays to support multi-path icons)\ninterface IconElement {\n  tag: 'path' | 'circle' | 'rect'\n  attrs: Record<string, string | number>\n}\n\nconst typeIcons: Record<TreeNodeType, IconElement[]> = {\n  study: [\n    { tag: 'path', attrs: { d: 'M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z' } },\n  ],\n  experiment: [\n    { tag: 'path', attrs: { d: 'M14 2v6a2 2 0 0 0 .245.96l5.51 10.08A2 2 0 0 1 18 22H6a2 2 0 0 1-1.755-2.96l5.51-10.08A2 2 0 0 0 10 8V2' } },\n    { tag: 'path', attrs: { d: 'M6.453 15h11.094' } },\n    { tag: 'path', attrs: { d: 'M8.5 2h7' } },\n  ],\n  plate: [\n    { tag: 'rect', attrs: { width: '7', height: '7', x: '3', y: '3', rx: '1' } },\n    { tag: 'rect', attrs: { width: '7', height: '7', x: '14', y: '3', rx: '1' } },\n    { tag: 'rect', attrs: { width: '7', height: '7', x: '14', y: '14', rx: '1' } },\n    { tag: 'rect', attrs: { width: '7', height: '7', x: '3', y: '14', rx: '1' } },\n  ],\n  sample: [\n    { tag: 'path', attrs: { d: 'M14.5 2v17.5c0 1.4-1.1 2.5-2.5 2.5c-1.4 0-2.5-1.1-2.5-2.5V2' } },\n    { tag: 'path', attrs: { d: 'M8.5 2h7' } },\n    { tag: 'path', attrs: { d: 'M14.5 16h-5' } },\n  ],\n  cell_line: [\n    { tag: 'circle', attrs: { cx: '12', cy: '12', r: '10' } },\n    { tag: 'circle', attrs: { cx: '12', cy: '12', r: '3' } },\n  ],\n  passage: [\n    { tag: 'path', attrs: { d: 'M3 5h.01' } },\n    { tag: 'path', attrs: { d: 'M3 12h.01' } },\n    { tag: 'path', attrs: { d: 'M3 19h.01' } },\n    { tag: 'path', attrs: { d: 'M8 5h13' } },\n    { tag: 'path', attrs: { d: 'M8 12h13' } },\n    { tag: 'path', attrs: { d: 'M8 19h13' } },\n  ],\n  clone: [\n    { tag: 'rect', attrs: { width: '14', height: '14', x: '8', y: '8', rx: '2', ry: '2' } },\n    { tag: 'path', attrs: { d: 'M4 16c-1.1 0-2-.9-2-2V4c0-1.1.9-2 2-2h10c1.1 0 2 .9 2 2' } },\n  ],\n  treatment: [\n    { tag: 'path', attrs: { d: 'm18 2 4 4' } },\n    { tag: 'path', attrs: { d: 'm17 7 3-3' } },\n    { tag: 'path', attrs: { d: 'M19 9 8.7 19.3c-1 1-2.5 1-3.4 0l-.6-.6c-1-1-1-2.5 0-3.4L15 5' } },\n    { tag: 'path', attrs: { d: 'm9 11 4 4' } },\n    { tag: 'path', attrs: { d: 'm5 19-3 3' } },\n    { tag: 'path', attrs: { d: 'm14 4 6 6' } },\n  ],\n  folder: [\n    { tag: 'path', attrs: { d: 'M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z' } },\n  ],\n  custom: [\n    { tag: 'path', attrs: { d: 'M9.671 4.136a2.34 2.34 0 0 1 4.659 0 2.34 2.34 0 0 0 3.319 1.915 2.34 2.34 0 0 1 2.33 4.033 2.34 2.34 0 0 0 0 3.831 2.34 2.34 0 0 1-2.33 4.033 2.34 2.34 0 0 0-3.319 1.915 2.34 2.34 0 0 1-4.659 0 2.34 2.34 0 0 0-3.32-1.915 2.34 2.34 0 0 1-2.33-4.033 2.34 2.34 0 0 0 0-3.831A2.34 2.34 0 0 1 6.35 6.051a2.34 2.34 0 0 0 3.319-1.915' } },\n    { tag: 'circle', attrs: { cx: '12', cy: '12', r: '3' } },\n  ],\n}\n\n// Collect all node IDs for expand all\nfunction collectAllIds(nodes: TreeNode[]): string[] {\n  const ids: string[] = []\n  function traverse(node: TreeNode) {\n    ids.push(node.id)\n    if (node.children) {\n      node.children.forEach(traverse)\n    }\n  }\n  nodes.forEach(traverse)\n  return ids\n}\n\nconst expansion = useExpansionSet({\n  defaultIds: () => props.defaultExpandedIds,\n  allIds: () => collectAllIds(props.nodes),\n  expandAll: () => props.expandAll,\n})\n\nfunction isExpanded(nodeId: string): boolean {\n  return expansion.isExpanded(nodeId)\n}\n\nfunction toggleExpand(node: TreeNode) {\n  const expanded = expansion.toggle(node.id)\n  if (expanded) {\n    emit('expand', node.id)\n  } else {\n    emit('collapse', node.id)\n  }\n}\n\nfunction handleNodeClick(node: TreeNode) {\n  emit('node-click', node)\n  emit('update:selectedId', node.id)\n}\n\nfunction handleHeaderKeydown(event: KeyboardEvent, node: TreeNode) {\n  // Keys pressed on the nested expand toggle belong to the toggle.\n  if (props.selectedId === undefined || event.target !== event.currentTarget) return\n  if (event.key !== 'Enter' && event.key !== ' ') return\n  event.preventDefault()\n  handleNodeClick(node)\n}\n\nfunction getIconElements(node: TreeNode): IconElement[] {\n  if (node.icon) return [{ tag: 'path', attrs: { d: node.icon } }]\n  return typeIcons[node.type || 'custom']\n}\n\nfunction getBadgeContent(node: TreeNode): string | number | undefined {\n  if (node.badge !== undefined) return node.badge\n  if (props.showCounts && node.children && node.children.length > 0) {\n    return node.children.length\n  }\n  return undefined\n}\n\nfunction getBadgeVariant(node: TreeNode): BadgeVariant {\n  return node.badgeVariant || 'default'\n}\n\nfunction hasChildren(node: TreeNode): boolean {\n  return !!node.children && node.children.length > 0\n}\n\nfunction canShowChildren(node: TreeNode, depth: number): boolean {\n  if (!hasChildren(node)) return false\n  if (props.maxDepth !== undefined && depth >= props.maxDepth) return false\n  return isExpanded(node.id)\n}\n\nconst treeId = useId()\n\n// Render tree node recursively\nfunction renderNode(node: TreeNode, depth: number): VNode {\n  const children = node.children\n  const expanded = isExpanded(node.id)\n  const canExpand = hasChildren(node)\n  const showChildNodes = canShowChildren(node, depth)\n  const badge = getBadgeContent(node)\n  const badgeVar = getBadgeVariant(node)\n  const iconElements = getIconElements(node)\n  const selectable = props.selectedId !== undefined\n  const selected = selectable && props.selectedId === node.id\n  // The child group sits beside the header, so the header treeitem claims it with aria-owns.\n  const groupId = `${treeId}-group-${encodeURIComponent(node.id)}`\n\n  const header = h(\n    'div',\n    {\n      class: ['mint-sample-tree__node-header', selected ? 'mint-sample-tree__node-header--selected' : ''],\n      // The focusable header is the treeitem, so its selected state is announced on focus.\n      role: 'treeitem',\n      'aria-expanded': canExpand ? expanded : undefined,\n      'aria-selected': selectable ? selected : undefined,\n      'aria-owns': showChildNodes ? groupId : undefined,\n      tabindex: selectable ? 0 : undefined,\n      onClick: () => handleNodeClick(node),\n      onKeydown: (e: KeyboardEvent) => handleHeaderKeydown(e, node),\n    },\n    [\n      canExpand\n        ? h(\n            'button',\n            {\n              type: 'button',\n              class: 'mint-sample-tree__toggle',\n              'aria-label': expanded ? 'Collapse' : 'Expand',\n              onClick: (e: Event) => {\n                e.stopPropagation()\n                toggleExpand(node)\n              },\n            },\n            [\n              h('svg', { fill: 'none', stroke: 'currentColor', viewBox: '0 0 24 24', 'stroke-width': '2', 'stroke-linecap': 'round', 'stroke-linejoin': 'round' }, [\n                h('path', { d: 'm9 18 6-6-6-6' }),\n              ]),\n            ]\n          )\n        : h('span', { class: 'mint-sample-tree__toggle-placeholder' }),\n      props.showIcons\n        ? h('span', { class: ['mint-sample-tree__icon', `mint-sample-tree__icon--${node.type || 'custom'}`] }, [\n            h('svg', { fill: 'none', stroke: 'currentColor', viewBox: '0 0 24 24', 'stroke-width': '2', 'stroke-linecap': 'round', 'stroke-linejoin': 'round' },\n              iconElements.map(el => h(el.tag, el.attrs))\n            ),\n          ])\n        : null,\n      h('span', { class: ['mint-sample-tree__label', `mint-sample-tree__label--${node.type || 'custom'}`] }, node.label),\n      badge !== undefined\n        ? h('span', { class: ['mint-sample-tree__badge', `mint-sample-tree__badge--${badgeVar}`] }, String(badge))\n        : null,\n    ]\n  )\n\n  const childNodes =\n    showChildNodes && children\n      ? h(\n          Transition,\n          { enterActiveClass: 'mint-sample-tree__children--entering', leaveActiveClass: 'mint-sample-tree__children--leaving' },\n          // The inner wrapper is the single grid row the 0fr → 1fr expand animates (4c).\n          () => h('div', { id: groupId, class: 'mint-sample-tree__children', role: 'group' }, [\n            h('div', { class: 'mint-sample-tree__children-inner' }, children.map((child) => renderNode(child, depth + 1))),\n          ])\n        )\n      : null\n\n  return h(\n    'div',\n    {\n      key: node.id,\n      class: ['mint-sample-tree__node', expanded ? 'mint-sample-tree__node--expanded' : '', !canExpand ? 'mint-sample-tree__node--leaf' : ''],\n    },\n    [header, childNodes]\n  )\n}\n\n// Render the entire tree\nfunction renderTree(): VNode[] {\n  return props.nodes.map((node) => renderNode(node, 0))\n}\n</script>\n\n<template>\n  <div :class=\"['mint-sample-tree', `mint-sample-tree--${size}`]\" role=\"tree\">\n    <!-- Error state -->\n    <div v-if=\"error\" class=\"mint-sample-tree__state\">\n      <slot name=\"error\" :error=\"error\">\n        <DataStateInternal state=\"error\" size=\"sm\" :title=\"error\" />\n      </slot>\n    </div>\n\n    <!-- Loading state -->\n    <div v-else-if=\"loading\" class=\"mint-sample-tree__state\">\n      <slot name=\"loading\">\n        <DataStateInternal state=\"loading\" size=\"sm\" loading-label=\"Loading samples\" />\n      </slot>\n    </div>\n\n    <!-- Empty state -->\n    <div v-else-if=\"nodes.length === 0\" class=\"mint-sample-tree__state\">\n      <slot name=\"empty\">\n        <DataStateInternal state=\"empty\" size=\"sm\" title=\"No items\" :icon-path=\"EMPTY_ICON_PATH\" />\n      </slot>\n    </div>\n\n    <!-- Tree nodes rendered via render function -->\n    <template v-else>\n      <component :is=\"() => renderTree()\" />\n    </template>\n  </div>\n</template>\n","import type { ProtocolStepType } from '../types'\n\n// Parameter definition for step templates\nexport interface ParameterDefinition {\n  key: string\n  label: string\n  type: 'number' | 'text' | 'select' | 'concentration' | 'temperature' | 'duration' | 'reagent'\n  unit?: string\n  options?: Array<{ value: string; label: string }>\n  required?: boolean\n  default?: unknown\n  min?: number\n  max?: number\n  placeholder?: string\n}\n\n// Step template definition\nexport interface StepTemplate {\n  id: string\n  type: ProtocolStepType\n  name: string\n  description?: string\n  defaultDuration?: number\n  parameters: ParameterDefinition[]\n  isBuiltIn?: boolean\n}\n\nexport const BUILT_IN_PROTOCOL_TEMPLATES: StepTemplate[] = [\n  {\n    id: 'builtin-incubation',\n    type: 'incubation',\n    name: 'Incubation',\n    description: 'Incubate samples at specified conditions',\n    defaultDuration: 60,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'temperature',\n        label: 'Temperature',\n        type: 'temperature',\n        unit: '°C',\n        required: true,\n        default: 37,\n        min: -80,\n        max: 100,\n      },\n      {\n        key: 'duration',\n        label: 'Duration',\n        type: 'duration',\n        unit: 'hours',\n        required: true,\n        default: 24,\n        min: 0,\n      },\n      {\n        key: 'co2',\n        label: 'CO2',\n        type: 'number',\n        unit: '%',\n        required: false,\n        default: 5,\n        min: 0,\n        max: 100,\n      },\n      {\n        key: 'humidity',\n        label: 'Humidity',\n        type: 'number',\n        unit: '%',\n        required: false,\n        default: 95,\n        min: 0,\n        max: 100,\n      },\n    ],\n  },\n  {\n    id: 'builtin-wash',\n    type: 'wash',\n    name: 'Wash',\n    description: 'Wash samples with buffer',\n    defaultDuration: 5,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'buffer',\n        label: 'Buffer',\n        type: 'select',\n        required: true,\n        default: 'PBS',\n        options: [\n          { value: 'PBS', label: 'PBS' },\n          { value: 'PBST', label: 'PBST' },\n          { value: 'TBS', label: 'TBS' },\n          { value: 'TBST', label: 'TBST' },\n          { value: 'Water', label: 'Water' },\n          { value: 'Other', label: 'Other' },\n        ],\n      },\n      {\n        key: 'volume',\n        label: 'Volume',\n        type: 'number',\n        unit: 'µL',\n        required: true,\n        default: 200,\n        min: 0,\n      },\n      {\n        key: 'cycles',\n        label: 'Wash Cycles',\n        type: 'number',\n        required: true,\n        default: 3,\n        min: 1,\n        max: 10,\n      },\n    ],\n  },\n  {\n    id: 'builtin-addition',\n    type: 'addition',\n    name: 'Addition',\n    description: 'Add reagent or compound to samples',\n    defaultDuration: 5,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'reagent',\n        label: 'Reagent',\n        type: 'text',\n        required: true,\n        placeholder: 'Enter reagent name',\n      },\n      {\n        key: 'volume',\n        label: 'Volume',\n        type: 'number',\n        unit: 'µL',\n        required: true,\n        default: 100,\n        min: 0,\n      },\n      {\n        key: 'concentration',\n        label: 'Concentration',\n        type: 'concentration',\n        required: false,\n      },\n    ],\n  },\n  {\n    id: 'builtin-measurement',\n    type: 'measurement',\n    name: 'Measurement',\n    description: 'Take measurements using specified instrument',\n    defaultDuration: 15,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'instrument',\n        label: 'Instrument',\n        type: 'select',\n        required: true,\n        options: [\n          { value: 'plate_reader', label: 'Plate Reader' },\n          { value: 'microscope', label: 'Microscope' },\n          { value: 'flow_cytometer', label: 'Flow Cytometer' },\n          { value: 'spectrophotometer', label: 'Spectrophotometer' },\n          { value: 'other', label: 'Other' },\n        ],\n      },\n      {\n        key: 'readout',\n        label: 'Readout Type',\n        type: 'text',\n        required: false,\n        placeholder: 'e.g., Absorbance 450nm',\n      },\n      {\n        key: 'notes',\n        label: 'Parameters',\n        type: 'text',\n        required: false,\n        placeholder: 'Additional parameters',\n      },\n    ],\n  },\n  {\n    id: 'builtin-centrifuge',\n    type: 'centrifuge',\n    name: 'Centrifuge',\n    description: 'Centrifuge samples',\n    defaultDuration: 10,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'speed',\n        label: 'Speed',\n        type: 'number',\n        unit: 'RPM',\n        required: true,\n        default: 1000,\n        min: 100,\n        max: 20000,\n      },\n      {\n        key: 'duration',\n        label: 'Duration',\n        type: 'number',\n        unit: 'min',\n        required: true,\n        default: 5,\n        min: 1,\n      },\n      {\n        key: 'temperature',\n        label: 'Temperature',\n        type: 'temperature',\n        unit: '°C',\n        required: false,\n        default: 4,\n        min: -10,\n        max: 40,\n      },\n    ],\n  },\n  {\n    id: 'builtin-transfer',\n    type: 'transfer',\n    name: 'Transfer',\n    description: 'Transfer samples between containers',\n    defaultDuration: 10,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'source',\n        label: 'Source',\n        type: 'text',\n        required: true,\n        placeholder: 'Source container',\n      },\n      {\n        key: 'destination',\n        label: 'Destination',\n        type: 'text',\n        required: true,\n        placeholder: 'Destination container',\n      },\n      {\n        key: 'volume',\n        label: 'Volume',\n        type: 'number',\n        unit: 'µL',\n        required: true,\n        default: 100,\n        min: 0,\n      },\n    ],\n  },\n  {\n    id: 'builtin-mix',\n    type: 'mix',\n    name: 'Mix',\n    description: 'Mix samples',\n    defaultDuration: 5,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'method',\n        label: 'Method',\n        type: 'select',\n        required: true,\n        default: 'pipette',\n        options: [\n          { value: 'pipette', label: 'Pipette mixing' },\n          { value: 'vortex', label: 'Vortex' },\n          { value: 'shaker', label: 'Orbital shaker' },\n          { value: 'inversion', label: 'Inversion' },\n        ],\n      },\n      {\n        key: 'duration',\n        label: 'Duration',\n        type: 'number',\n        unit: 'sec',\n        required: false,\n        default: 30,\n        min: 1,\n      },\n      {\n        key: 'speed',\n        label: 'Speed/Intensity',\n        type: 'text',\n        required: false,\n        placeholder: 'e.g., 300 RPM',\n      },\n    ],\n  },\n  {\n    id: 'builtin-custom',\n    type: 'custom',\n    name: 'Custom Step',\n    description: 'Custom protocol step',\n    defaultDuration: 15,\n    isBuiltIn: true,\n    parameters: [\n      {\n        key: 'description',\n        label: 'Description',\n        type: 'text',\n        required: true,\n        placeholder: 'Describe the step',\n      },\n      {\n        key: 'notes',\n        label: 'Notes',\n        type: 'text',\n        required: false,\n        placeholder: 'Additional notes',\n      },\n    ],\n  },\n]\n","import { ref, computed, type Ref, type ComputedRef } from 'vue'\nimport type { ProtocolStep, ProtocolStepType, ProtocolStepStatus } from '../types'\nimport {\n  BUILT_IN_PROTOCOL_TEMPLATES,\n  type ParameterDefinition,\n  type StepTemplate,\n} from './protocolTemplateCatalog'\n\nexport type { ParameterDefinition, StepTemplate } from './protocolTemplateCatalog'\n\n// Validation result\nexport interface ValidationResult {\n  valid: boolean\n  errors: Record<string, string>\n}\n\nexport interface UseProtocolTemplatesReturn {\n  builtInTemplates: StepTemplate[]\n  customTemplates: Ref<StepTemplate[]>\n  allTemplates: ComputedRef<StepTemplate[]>\n  getTemplateByType: (type: ProtocolStepType) => StepTemplate | undefined\n  getTemplateById: (id: string) => StepTemplate | undefined\n  saveCustomTemplate: (template: StepTemplate) => void\n  deleteCustomTemplate: (templateId: string) => void\n  validateStep: (step: ProtocolStep, template: StepTemplate) => ValidationResult\n  createStepFromTemplate: (template: StepTemplate, overrides?: Partial<ProtocolStep>) => ProtocolStep\n  formatParameterValue: (value: unknown, param: ParameterDefinition) => string\n}\n\n// Storage key for custom templates\nconst STORAGE_KEY = 'mint-custom-protocol-templates'\n\nfunction isStepTemplate(value: unknown): value is StepTemplate {\n  if (!value || typeof value !== 'object') return false\n  const candidate = value as Partial<StepTemplate>\n  return (\n    typeof candidate.id === 'string'\n    && typeof candidate.type === 'string'\n    && typeof candidate.name === 'string'\n    && Array.isArray(candidate.parameters)\n  )\n}\n\nfunction loadCustomTemplates(): StepTemplate[] {\n  try {\n    const stored = localStorage.getItem(STORAGE_KEY)\n    if (stored) {\n      const parsed = JSON.parse(stored)\n      return Array.isArray(parsed) ? parsed.filter(isStepTemplate) : []\n    }\n  } catch {\n    // Ignore errors\n  }\n  return []\n}\n\nfunction saveCustomTemplatesToStorage(templates: StepTemplate[]) {\n  try {\n    localStorage.setItem(STORAGE_KEY, JSON.stringify(templates))\n  } catch {\n    // Ignore errors\n  }\n}\n\n/** Provides built-in and custom protocol step templates with validation and step creation helpers. */\nexport function useProtocolTemplates(): UseProtocolTemplatesReturn {\n  const customTemplates = ref<StepTemplate[]>(loadCustomTemplates())\n\n  const allTemplates = computed(() => {\n    return [...BUILT_IN_PROTOCOL_TEMPLATES, ...customTemplates.value]\n  })\n\n  function getTemplateByType(type: ProtocolStepType): StepTemplate | undefined {\n    // First check custom templates, then built-in\n    return (\n      customTemplates.value.find((t) => t.type === type) ||\n      BUILT_IN_PROTOCOL_TEMPLATES.find((t) => t.type === type)\n    )\n  }\n\n  function getTemplateById(id: string): StepTemplate | undefined {\n    return (\n      customTemplates.value.find((t) => t.id === id) ||\n      BUILT_IN_PROTOCOL_TEMPLATES.find((t) => t.id === id)\n    )\n  }\n\n  function saveCustomTemplate(template: StepTemplate) {\n    const newTemplate = {\n      ...template,\n      isBuiltIn: false,\n      id: template.id || `custom-${Date.now()}`,\n    }\n\n    const index = customTemplates.value.findIndex((t) => t.id === newTemplate.id)\n    if (index >= 0) {\n      customTemplates.value[index] = newTemplate\n    } else {\n      customTemplates.value.push(newTemplate)\n    }\n\n    saveCustomTemplatesToStorage(customTemplates.value)\n  }\n\n  function deleteCustomTemplate(templateId: string) {\n    const index = customTemplates.value.findIndex((t) => t.id === templateId)\n    if (index >= 0) {\n      customTemplates.value.splice(index, 1)\n      saveCustomTemplatesToStorage(customTemplates.value)\n    }\n  }\n\n  function validateStep(step: ProtocolStep, template: StepTemplate): ValidationResult {\n    const errors: Record<string, string> = {}\n\n    if (!step.name || step.name.trim() === '') {\n      errors.name = 'Step name is required'\n    }\n\n    for (const param of template.parameters) {\n      if (param.required) {\n        const value = step.parameters?.[param.key]\n        if (value === undefined || value === null || value === '') {\n          errors[param.key] = `${param.label} is required`\n        }\n      }\n\n      if (param.type === 'number' || param.type === 'temperature' || param.type === 'duration') {\n        const value = step.parameters?.[param.key]\n        if (value !== undefined && value !== null && value !== '') {\n          const numValue = Number(value)\n          if (isNaN(numValue)) {\n            errors[param.key] = `${param.label} must be a number`\n          } else {\n            if (param.min !== undefined && numValue < param.min) {\n              errors[param.key] = `${param.label} must be at least ${param.min}`\n            }\n            if (param.max !== undefined && numValue > param.max) {\n              errors[param.key] = `${param.label} must be at most ${param.max}`\n            }\n          }\n        }\n      }\n    }\n\n    return {\n      valid: Object.keys(errors).length === 0,\n      errors,\n    }\n  }\n\n  function createStepFromTemplate(\n    template: StepTemplate,\n    overrides?: Partial<ProtocolStep>\n  ): ProtocolStep {\n    // Build default parameters from template\n    const parameters: Record<string, unknown> = {}\n    for (const param of template.parameters) {\n      if (param.default !== undefined) {\n        parameters[param.key] = param.default\n      }\n    }\n\n    return {\n      id: `step-${Date.now()}-${Math.random().toString(36).slice(2, 9)}`,\n      type: template.type,\n      name: template.name,\n      description: template.description,\n      duration: template.defaultDuration,\n      status: 'pending' as ProtocolStepStatus,\n      parameters,\n      order: 0,\n      ...overrides,\n    }\n  }\n\n  function formatParameterValue(value: unknown, param: ParameterDefinition): string {\n    if (value === undefined || value === null || value === '') {\n      return '-'\n    }\n\n    if (param.type === 'select' && param.options) {\n      const option = param.options.find((o) => o.value === value)\n      if (option) return option.label\n    }\n\n    if (param.type === 'concentration' && typeof value === 'object') {\n      const conc = value as { value: number; unit: string }\n      return `${conc.value} ${conc.unit}`\n    }\n\n    const strValue = String(value)\n    if (param.unit) {\n      return `${strValue} ${param.unit}`\n    }\n\n    return strValue\n  }\n\n  return {\n    builtInTemplates: BUILT_IN_PROTOCOL_TEMPLATES,\n    customTemplates,\n    allTemplates,\n    getTemplateByType,\n    getTemplateById,\n    saveCustomTemplate,\n    deleteCustomTemplate,\n    validateStep,\n    createStepFromTemplate,\n    formatParameterValue,\n  }\n}\n","import type { ProtocolStepType } from '../types'\n\nexport const PROTOCOL_STEP_TYPE_ICONS: Record<ProtocolStepType, string> = {\n  incubation: 'M12 3v1m0 16v1m9-9h-1M4 12H3m15.364 6.364l-.707-.707M6.343 6.343l-.707-.707m12.728 0l-.707.707M6.343 17.657l-.707.707M16 12a4 4 0 11-8 0 4 4 0 018 0z',\n  wash: 'M5 3v4M3 5h4M6 17v4m-2-2h4m5-16l2.286 6.857L21 12l-5.714 2.143L13 21l-2.286-6.857L5 12l5.714-2.143L13 3z',\n  addition: 'M12 9v3m0 0v3m0-3h3m-3 0H9m12 0a9 9 0 11-18 0 9 9 0 0118 0z',\n  measurement: 'M9 19v-6a2 2 0 00-2-2H5a2 2 0 00-2 2v6a2 2 0 002 2h2a2 2 0 002-2zm0 0V9a2 2 0 012-2h2a2 2 0 012 2v10m-6 0a2 2 0 002 2h2a2 2 0 002-2m0 0V5a2 2 0 012-2h2a2 2 0 012 2v14a2 2 0 01-2 2h-2a2 2 0 01-2-2z',\n  transfer: 'M8 7h12m0 0l-4-4m4 4l-4 4m0 6H4m0 0l4 4m-4-4l4-4',\n  centrifuge: 'M4 4v5h.582m15.356 2A8.001 8.001 0 004.582 9m0 0H9m11 11v-5h-.581m0 0a8.003 8.003 0 01-15.357-2m15.357 2H15',\n  mix: 'M14.752 11.168l-3.197-2.132A1 1 0 0010 9.87v4.263a1 1 0 001.555.832l3.197-2.132a1 1 0 000-1.664z',\n  custom: 'M10.325 4.317c.426-1.756 2.924-1.756 3.35 0a1.724 1.724 0 002.573 1.066c1.543-.94 3.31.826 2.37 2.37a1.724 1.724 0 001.065 2.572c1.756.426 1.756 2.924 0 3.35a1.724 1.724 0 00-1.066 2.573c.94 1.543-.826 3.31-2.37 2.37a1.724 1.724 0 00-2.572 1.065c-.426 1.756-2.924 1.756-3.35 0a1.724 1.724 0 00-2.573-1.066c-1.543.94-3.31-.826-2.37-2.37a1.724 1.724 0 00-1.065-2.572c-1.756-.426-1.756-2.924 0-3.35a1.724 1.724 0 001.066-2.573c-.94-1.543.826-3.31 2.37-2.37.996.608 2.296.07 2.572-1.065z',\n}\n\nexport function formatProtocolDuration(minutes: number | undefined): string {\n  if (minutes === undefined) return ''\n  if (minutes < 60) return `${minutes}m`\n  const hours = Math.floor(minutes / 60)\n  const mins = minutes % 60\n  return mins > 0 ? `${hours}h ${mins}m` : `${hours}h`\n}\n","<script setup lang=\"ts\">\n/** Renders one typed parameter control for ProtocolStepEditor, composed from SDK fields. */\nimport { computed, useId } from 'vue'\nimport type { ParameterDefinition } from '../composables/useProtocolTemplates'\nimport type { ConcentrationValue } from '../composables/useConcentrationUnits'\nimport BaseInput from './BaseInput.vue'\nimport BaseSelect from './BaseSelect.vue'\nimport NumberInput from './NumberInput.vue'\nimport ConcentrationInput from './ConcentrationInput.vue'\nimport FormField from './FormField.vue'\n\ninterface Props {\n  parameter: ParameterDefinition\n  modelValue?: unknown\n  error?: string\n}\n\nconst props = defineProps<Props>()\n\nconst emit = defineEmits<{\n  'update:modelValue': [value: unknown]\n}>()\n\nconst controlId = useId()\n\nconst isNumeric = computed(() => ['number', 'temperature', 'duration'].includes(props.parameter.type))\n\nconst scalarValue = computed(() => (\n  props.modelValue as string | undefined\n))\n\nconst numericValue = computed(() => (\n  typeof props.modelValue === 'number' ? props.modelValue : null\n))\n\nconst concentrationValue = computed(() => (\n  props.modelValue as ConcentrationValue | undefined\n))\n\nconst placeholder = computed(() => props.parameter.placeholder\n  || (props.parameter.type === 'reagent' ? 'Enter reagent name' : `Enter ${props.parameter.label.toLowerCase()}`))\n\n/** NumberInput reports an empty field as null; an empty parameter is undefined. */\nfunction handleInput(value: string | number | null) {\n  emit('update:modelValue', value ?? undefined)\n}\n</script>\n\n<template>\n  <FormField\n    :label=\"parameter.label\"\n    :required=\"parameter.required\"\n    :error=\"error\"\n    :html-for=\"controlId\"\n    layout=\"row\"\n  >\n    <NumberInput\n      v-if=\"isNumeric\"\n      :id=\"controlId\"\n      size=\"sm\"\n      :model-value=\"numericValue\"\n      :min=\"parameter.min\"\n      :max=\"parameter.max\"\n      :unit=\"parameter.unit\"\n      :placeholder=\"placeholder\"\n      :invalid=\"!!error\"\n      @update:model-value=\"handleInput\"\n    />\n\n    <BaseSelect\n      v-else-if=\"parameter.type === 'select'\"\n      :id=\"controlId\"\n      size=\"sm\"\n      :model-value=\"scalarValue\"\n      :options=\"parameter.options ?? []\"\n      :placeholder=\"`Select ${parameter.label.toLowerCase()}`\"\n      :invalid=\"!!error\"\n      @update:model-value=\"emit('update:modelValue', $event)\"\n    />\n\n    <ConcentrationInput\n      v-else-if=\"parameter.type === 'concentration'\"\n      :model-value=\"concentrationValue\"\n      :invalid=\"!!error\"\n      size=\"sm\"\n      @update:model-value=\"emit('update:modelValue', $event)\"\n    />\n\n    <BaseInput\n      v-else\n      :id=\"controlId\"\n      size=\"sm\"\n      :model-value=\"scalarValue\"\n      :placeholder=\"placeholder\"\n      :invalid=\"!!error\"\n      @update:model-value=\"handleInput\"\n    />\n  </FormField>\n</template>\n","<script setup lang=\"ts\">\n/** Renders one typed parameter control for ProtocolStepEditor, composed from SDK fields. */\nimport { computed, useId } from 'vue'\nimport type { ParameterDefinition } from '../composables/useProtocolTemplates'\nimport type { ConcentrationValue } from '../composables/useConcentrationUnits'\nimport BaseInput from './BaseInput.vue'\nimport BaseSelect from './BaseSelect.vue'\nimport NumberInput from './NumberInput.vue'\nimport ConcentrationInput from './ConcentrationInput.vue'\nimport FormField from './FormField.vue'\n\ninterface Props {\n  parameter: ParameterDefinition\n  modelValue?: unknown\n  error?: string\n}\n\nconst props = defineProps<Props>()\n\nconst emit = defineEmits<{\n  'update:modelValue': [value: unknown]\n}>()\n\nconst controlId = useId()\n\nconst isNumeric = computed(() => ['number', 'temperature', 'duration'].includes(props.parameter.type))\n\nconst scalarValue = computed(() => (\n  props.modelValue as string | undefined\n))\n\nconst numericValue = computed(() => (\n  typeof props.modelValue === 'number' ? props.modelValue : null\n))\n\nconst concentrationValue = computed(() => (\n  props.modelValue as ConcentrationValue | undefined\n))\n\nconst placeholder = computed(() => props.parameter.placeholder\n  || (props.parameter.type === 'reagent' ? 'Enter reagent name' : `Enter ${props.parameter.label.toLowerCase()}`))\n\n/** NumberInput reports an empty field as null; an empty parameter is undefined. */\nfunction handleInput(value: string | number | null) {\n  emit('update:modelValue', value ?? undefined)\n}\n</script>\n\n<template>\n  <FormField\n    :label=\"parameter.label\"\n    :required=\"parameter.required\"\n    :error=\"error\"\n    :html-for=\"controlId\"\n    layout=\"row\"\n  >\n    <NumberInput\n      v-if=\"isNumeric\"\n      :id=\"controlId\"\n      size=\"sm\"\n      :model-value=\"numericValue\"\n      :min=\"parameter.min\"\n      :max=\"parameter.max\"\n      :unit=\"parameter.unit\"\n      :placeholder=\"placeholder\"\n      :invalid=\"!!error\"\n      @update:model-value=\"handleInput\"\n    />\n\n    <BaseSelect\n      v-else-if=\"parameter.type === 'select'\"\n      :id=\"controlId\"\n      size=\"sm\"\n      :model-value=\"scalarValue\"\n      :options=\"parameter.options ?? []\"\n      :placeholder=\"`Select ${parameter.label.toLowerCase()}`\"\n      :invalid=\"!!error\"\n      @update:model-value=\"emit('update:modelValue', $event)\"\n    />\n\n    <ConcentrationInput\n      v-else-if=\"parameter.type === 'concentration'\"\n      :model-value=\"concentrationValue\"\n      :invalid=\"!!error\"\n      size=\"sm\"\n      @update:model-value=\"emit('update:modelValue', $event)\"\n    />\n\n    <BaseInput\n      v-else\n      :id=\"controlId\"\n      size=\"sm\"\n      :model-value=\"scalarValue\"\n      :placeholder=\"placeholder\"\n      :invalid=\"!!error\"\n      @update:model-value=\"handleInput\"\n    />\n  </FormField>\n</template>\n","import type { ProtocolStep, ProtocolStepStatus } from '../types'\nimport type { ParameterDefinition, StepTemplate } from '../composables/useProtocolTemplates'\n\nexport interface ProtocolStepEditorFields {\n  name: string\n  description: string\n  duration?: number\n  parameters: Record<string, unknown>\n}\n\nexport interface InitializedProtocolStepEditorState {\n  selectedTemplateId: string | null\n  fields: ProtocolStepEditorFields\n}\n\nexport type ProtocolParameterFormatter = (\n  value: unknown,\n  parameter: ParameterDefinition\n) => string\n\nexport function buildProtocolTemplateDefaults(\n  template: StepTemplate\n): ProtocolStepEditorFields {\n  const parameters: Record<string, unknown> = {}\n  for (const parameter of template.parameters) {\n    if (parameter.default !== undefined) {\n      parameters[parameter.key] = parameter.default\n    }\n  }\n\n  return {\n    name: template.name,\n    description: template.description || '',\n    duration: template.defaultDuration,\n    parameters,\n  }\n}\n\nexport function buildProtocolStepEditorState(\n  step: ProtocolStep,\n  getTemplateByType: (type: ProtocolStep['type']) => StepTemplate | undefined\n): InitializedProtocolStepEditorState {\n  const template = getTemplateByType(step.type)\n\n  return {\n    selectedTemplateId: template?.id || null,\n    fields: {\n      name: step.name,\n      description: step.description || '',\n      duration: step.duration,\n      parameters: { ...(step.parameters || {}) },\n    },\n  }\n}\n\nexport function buildProtocolStepPreview(\n  template: StepTemplate,\n  fields: ProtocolStepEditorFields,\n  sourceStep?: ProtocolStep\n): ProtocolStep {\n  return {\n    id: sourceStep?.id || 'preview',\n    type: template.type,\n    name: fields.name || template.name,\n    description: fields.description,\n    duration: fields.duration ?? template.defaultDuration,\n    status: (sourceStep?.status || 'pending') as ProtocolStepStatus,\n    parameters: { ...fields.parameters },\n    order: sourceStep?.order || 0,\n  }\n}\n\nexport function buildProtocolPreviewParams(\n  template: StepTemplate,\n  parameters: Record<string, unknown>,\n  formatParameterValue: ProtocolParameterFormatter\n): string {\n  return template.parameters\n    .filter((parameter) => (\n      parameters[parameter.key] !== undefined\n      && parameters[parameter.key] !== ''\n    ))\n    .map((parameter) => formatParameterValue(parameters[parameter.key], parameter))\n    .join(', ')\n}\n\nexport function buildCustomProtocolTemplate(\n  template: StepTemplate,\n  fields: ProtocolStepEditorFields,\n  templateId = `custom-${Date.now()}`\n): StepTemplate {\n  return {\n    id: templateId,\n    type: template.type,\n    name: fields.name || template.name,\n    description: fields.description,\n    defaultDuration: fields.duration,\n    parameters: template.parameters.map((parameter) => ({\n      ...parameter,\n      default: fields.parameters[parameter.key],\n    })),\n    isBuiltIn: false,\n  }\n}\n","<script setup lang=\"ts\">\n/** Form for creating or editing a single protocol step (incubation, wash, addition, centrifuge, etc.) with template picker, typed parameters, and duration. */\nimport { ref, computed, watch, onMounted, useId } from 'vue'\nimport type { ProtocolStep, SelectOption } from '../types'\nimport {\n  useProtocolTemplates,\n  type StepTemplate,\n} from '../composables/useProtocolTemplates'\nimport {\n  PROTOCOL_STEP_TYPE_ICONS as stepTypeIcons,\n  formatProtocolDuration as formatDuration,\n} from './ProtocolStep.presentation'\nimport BaseButton from './BaseButton.vue'\nimport BaseInput from './BaseInput.vue'\nimport FormField from './FormField.vue'\nimport ProtocolStepParameterField from './ProtocolStepParameterField.vue'\nimport BaseSelect from './BaseSelect.vue'\nimport {\n  buildCustomProtocolTemplate,\n  buildProtocolPreviewParams,\n  buildProtocolStepEditorState,\n  buildProtocolStepPreview,\n  buildProtocolTemplateDefaults,\n  type ProtocolStepEditorFields,\n} from './ProtocolStepEditor.state'\n\ninterface Props {\n  modelValue?: ProtocolStep\n  templates?: StepTemplate[]\n  customTemplates?: StepTemplate[]\n  mode?: 'create' | 'edit'\n  showPreview?: boolean\n  /** 1-based position of this step, shown as \"3 / 7\" beside the title together with stepCount. */\n  stepNumber?: number\n  /** Total steps in the protocol; the ordinal shows only when both are set. */\n  stepCount?: number\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  mode: 'create',\n  showPreview: true,\n})\n\nconst emit = defineEmits<{\n  'update:modelValue': [step: ProtocolStep]\n  'save': [step: ProtocolStep]\n  'save-template': [template: StepTemplate]\n  'cancel': []\n}>()\n\nconst {\n  allTemplates,\n  getTemplateByType,\n  validateStep,\n  formatParameterValue,\n} = useProtocolTemplates()\n\n// State\nconst fieldId = useId()\nconst selectedTemplateId = ref<string | null>(null)\nconst stepName = ref('')\nconst stepDescription = ref('')\nconst stepDuration = ref<number | undefined>()\nconst parameters = ref<Record<string, unknown>>({})\nconst validationErrors = ref<Record<string, string>>({})\n\n// Combined templates from props and composable\nconst availableTemplates = computed(() => {\n  if (props.templates && props.templates.length > 0) {\n    return props.templates\n  }\n  const combined = [...allTemplates.value]\n  if (props.customTemplates) {\n    combined.push(...props.customTemplates)\n  }\n  return combined\n})\n\nconst templateOptions = computed<SelectOption<string>[]>(() =>\n  availableTemplates.value.map((t) => ({ value: t.id, label: t.name, description: t.description })),\n)\n\n// Selected template\nconst selectedTemplate = computed(() => {\n  if (!selectedTemplateId.value) return null\n  return availableTemplates.value.find((t) => t.id === selectedTemplateId.value) || null\n})\n\n// Preview computed\nconst previewStep = computed<ProtocolStep | null>(() => {\n  if (!selectedTemplate.value) return null\n  return buildProtocolStepPreview(selectedTemplate.value, editorFields(), props.modelValue)\n})\n\nconst previewParams = computed(() => {\n  if (!selectedTemplate.value || !previewStep.value) return ''\n  return buildProtocolPreviewParams(\n    selectedTemplate.value,\n    parameters.value,\n    formatParameterValue\n  )\n})\n\nfunction editorFields(): ProtocolStepEditorFields {\n  return {\n    name: stepName.value,\n    description: stepDescription.value,\n    duration: stepDuration.value,\n    parameters: parameters.value,\n  }\n}\n\nfunction applyEditorFields(fields: ProtocolStepEditorFields) {\n  stepName.value = fields.name\n  stepDescription.value = fields.description\n  stepDuration.value = fields.duration\n  parameters.value = { ...fields.parameters }\n}\n\nfunction initFromStep(step: ProtocolStep) {\n  const state = buildProtocolStepEditorState(step, getTemplateByType)\n  selectedTemplateId.value = state.selectedTemplateId\n  applyEditorFields(state.fields)\n}\n\n// Handle template selection\nfunction selectTemplate(template: StepTemplate) {\n  selectedTemplateId.value = template.id\n\n  // Reset to template defaults if creating new\n  if (props.mode === 'create') {\n    applyEditorFields(buildProtocolTemplateDefaults(template))\n  }\n}\n\nfunction handleTemplateChange(id: string | number) {\n  const template = availableTemplates.value.find((t) => t.id === id)\n  if (template) selectTemplate(template)\n}\n\n// Handle parameter change\nfunction handleParamChange(key: string, value: unknown) {\n  parameters.value[key] = value\n  // Clear validation error when user changes value\n  if (validationErrors.value[key]) {\n    delete validationErrors.value[key]\n  }\n}\n\n// Validate and save\nfunction handleSave() {\n  if (!selectedTemplate.value || !previewStep.value) return\n\n  const result = validateStep(previewStep.value, selectedTemplate.value)\n  validationErrors.value = result.errors\n\n  if (result.valid) {\n    emit('save', previewStep.value)\n    emit('update:modelValue', previewStep.value)\n  }\n}\n\n// Save as template\nfunction handleSaveTemplate() {\n  if (!selectedTemplate.value) return\n  emit('save-template', buildCustomProtocolTemplate(selectedTemplate.value, editorFields()))\n}\n\n// Handle cancel\nfunction handleCancel() {\n  emit('cancel')\n}\n\nonMounted(() => {\n  if (props.modelValue) {\n    initFromStep(props.modelValue)\n  } else if (availableTemplates.value.length > 0) {\n    selectTemplate(availableTemplates.value[0])\n  }\n})\n\n// Watch for external changes\nwatch(\n  () => props.modelValue,\n  (step) => {\n    if (step) {\n      initFromStep(step)\n    }\n  }\n)\n</script>\n\n<template>\n  <div class=\"mint-protocol-editor\">\n    <!-- Header: the mode is part of the title -->\n    <div class=\"mint-protocol-editor__header\">\n      <span class=\"mint-protocol-editor__title\">\n        {{ mode === 'create' ? 'Create step' : 'Edit step' }}\n      </span>\n      <span v-if=\"stepNumber && stepCount\" class=\"mint-protocol-editor__counter\">{{ stepNumber }} / {{ stepCount }}</span>\n    </div>\n\n    <!-- Form -->\n    <div class=\"mint-protocol-editor__form\">\n      <FormField label=\"Template\" :field-id=\"`${fieldId}-template`\" layout=\"row\">\n        <BaseSelect\n          searchable\n          size=\"sm\"\n          :aria-labelledby=\"`${fieldId}-template-label`\"\n          :model-value=\"selectedTemplateId ?? undefined\"\n          :options=\"templateOptions\"\n          placeholder=\"Select template…\"\n          search-placeholder=\"Search templates…\"\n          @update:model-value=\"handleTemplateChange\"\n        />\n      </FormField>\n\n      <FormField label=\"Step name\" required :error=\"validationErrors.name\" :html-for=\"`${fieldId}-name`\" layout=\"row\">\n        <BaseInput\n          :id=\"`${fieldId}-name`\"\n          v-model=\"stepName\"\n          size=\"sm\"\n          placeholder=\"Enter step name\"\n          :invalid=\"!!validationErrors.name\"\n        />\n      </FormField>\n\n      <!-- Dynamic parameters -->\n      <template v-if=\"selectedTemplate\">\n        <ProtocolStepParameterField\n          v-for=\"param in selectedTemplate.parameters\"\n          :key=\"param.key\"\n          :parameter=\"param\"\n          :model-value=\"parameters[param.key]\"\n          :error=\"validationErrors[param.key]\"\n          @update:model-value=\"handleParamChange(param.key, $event)\"\n        />\n      </template>\n\n      <FormField label=\"Description\" :html-for=\"`${fieldId}-description`\" layout=\"row\">\n        <BaseInput\n          type=\"textarea\"\n          :id=\"`${fieldId}-description`\"\n          v-model=\"stepDescription\"\n          placeholder=\"Optional step description\"\n          :rows=\"2\"\n        />\n      </FormField>\n    </div>\n\n    <!-- Preview -->\n    <div v-if=\"showPreview && previewStep\" class=\"mint-protocol-editor__preview\">\n      <div class=\"mint-protocol-editor__preview-title\">Preview</div>\n      <div class=\"mint-protocol-editor__preview-card\">\n        <div class=\"mint-protocol-editor__preview-icon\">\n          <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n            <path\n              stroke-linecap=\"round\"\n              stroke-linejoin=\"round\"\n              stroke-width=\"2\"\n              :d=\"stepTypeIcons[previewStep.type]\"\n            />\n          </svg>\n        </div>\n        <div class=\"mint-protocol-editor__preview-content\">\n          <div class=\"mint-protocol-editor__preview-name\">{{ previewStep.name }}</div>\n          <div v-if=\"previewParams\" class=\"mint-protocol-editor__preview-params\">\n            {{ previewParams }}\n          </div>\n        </div>\n        <div v-if=\"previewStep.duration\" class=\"mint-protocol-editor__preview-duration\">\n          {{ formatDuration(previewStep.duration) }}\n        </div>\n      </div>\n    </div>\n\n    <!-- Actions -->\n    <div class=\"mint-protocol-editor__actions\">\n      <BaseButton variant=\"ghost\" size=\"sm\" @click=\"handleSaveTemplate\">\n        Save as template\n      </BaseButton>\n      <div class=\"mint-protocol-editor__actions-spacer\" />\n      <BaseButton variant=\"secondary\" size=\"sm\" @click=\"handleCancel\">\n        Cancel\n      </BaseButton>\n      <BaseButton variant=\"primary\" size=\"sm\" :disabled=\"!selectedTemplate\" @click=\"handleSave\">\n        {{ mode === 'create' ? 'Add step' : 'Save changes' }}\n      </BaseButton>\n    </div>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Form for creating or editing a single protocol step (incubation, wash, addition, centrifuge, etc.) with template picker, typed parameters, and duration. */\nimport { ref, computed, watch, onMounted, useId } from 'vue'\nimport type { ProtocolStep, SelectOption } from '../types'\nimport {\n  useProtocolTemplates,\n  type StepTemplate,\n} from '../composables/useProtocolTemplates'\nimport {\n  PROTOCOL_STEP_TYPE_ICONS as stepTypeIcons,\n  formatProtocolDuration as formatDuration,\n} from './ProtocolStep.presentation'\nimport BaseButton from './BaseButton.vue'\nimport BaseInput from './BaseInput.vue'\nimport FormField from './FormField.vue'\nimport ProtocolStepParameterField from './ProtocolStepParameterField.vue'\nimport BaseSelect from './BaseSelect.vue'\nimport {\n  buildCustomProtocolTemplate,\n  buildProtocolPreviewParams,\n  buildProtocolStepEditorState,\n  buildProtocolStepPreview,\n  buildProtocolTemplateDefaults,\n  type ProtocolStepEditorFields,\n} from './ProtocolStepEditor.state'\n\ninterface Props {\n  modelValue?: ProtocolStep\n  templates?: StepTemplate[]\n  customTemplates?: StepTemplate[]\n  mode?: 'create' | 'edit'\n  showPreview?: boolean\n  /** 1-based position of this step, shown as \"3 / 7\" beside the title together with stepCount. */\n  stepNumber?: number\n  /** Total steps in the protocol; the ordinal shows only when both are set. */\n  stepCount?: number\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  mode: 'create',\n  showPreview: true,\n})\n\nconst emit = defineEmits<{\n  'update:modelValue': [step: ProtocolStep]\n  'save': [step: ProtocolStep]\n  'save-template': [template: StepTemplate]\n  'cancel': []\n}>()\n\nconst {\n  allTemplates,\n  getTemplateByType,\n  validateStep,\n  formatParameterValue,\n} = useProtocolTemplates()\n\n// State\nconst fieldId = useId()\nconst selectedTemplateId = ref<string | null>(null)\nconst stepName = ref('')\nconst stepDescription = ref('')\nconst stepDuration = ref<number | undefined>()\nconst parameters = ref<Record<string, unknown>>({})\nconst validationErrors = ref<Record<string, string>>({})\n\n// Combined templates from props and composable\nconst availableTemplates = computed(() => {\n  if (props.templates && props.templates.length > 0) {\n    return props.templates\n  }\n  const combined = [...allTemplates.value]\n  if (props.customTemplates) {\n    combined.push(...props.customTemplates)\n  }\n  return combined\n})\n\nconst templateOptions = computed<SelectOption<string>[]>(() =>\n  availableTemplates.value.map((t) => ({ value: t.id, label: t.name, description: t.description })),\n)\n\n// Selected template\nconst selectedTemplate = computed(() => {\n  if (!selectedTemplateId.value) return null\n  return availableTemplates.value.find((t) => t.id === selectedTemplateId.value) || null\n})\n\n// Preview computed\nconst previewStep = computed<ProtocolStep | null>(() => {\n  if (!selectedTemplate.value) return null\n  return buildProtocolStepPreview(selectedTemplate.value, editorFields(), props.modelValue)\n})\n\nconst previewParams = computed(() => {\n  if (!selectedTemplate.value || !previewStep.value) return ''\n  return buildProtocolPreviewParams(\n    selectedTemplate.value,\n    parameters.value,\n    formatParameterValue\n  )\n})\n\nfunction editorFields(): ProtocolStepEditorFields {\n  return {\n    name: stepName.value,\n    description: stepDescription.value,\n    duration: stepDuration.value,\n    parameters: parameters.value,\n  }\n}\n\nfunction applyEditorFields(fields: ProtocolStepEditorFields) {\n  stepName.value = fields.name\n  stepDescription.value = fields.description\n  stepDuration.value = fields.duration\n  parameters.value = { ...fields.parameters }\n}\n\nfunction initFromStep(step: ProtocolStep) {\n  const state = buildProtocolStepEditorState(step, getTemplateByType)\n  selectedTemplateId.value = state.selectedTemplateId\n  applyEditorFields(state.fields)\n}\n\n// Handle template selection\nfunction selectTemplate(template: StepTemplate) {\n  selectedTemplateId.value = template.id\n\n  // Reset to template defaults if creating new\n  if (props.mode === 'create') {\n    applyEditorFields(buildProtocolTemplateDefaults(template))\n  }\n}\n\nfunction handleTemplateChange(id: string | number) {\n  const template = availableTemplates.value.find((t) => t.id === id)\n  if (template) selectTemplate(template)\n}\n\n// Handle parameter change\nfunction handleParamChange(key: string, value: unknown) {\n  parameters.value[key] = value\n  // Clear validation error when user changes value\n  if (validationErrors.value[key]) {\n    delete validationErrors.value[key]\n  }\n}\n\n// Validate and save\nfunction handleSave() {\n  if (!selectedTemplate.value || !previewStep.value) return\n\n  const result = validateStep(previewStep.value, selectedTemplate.value)\n  validationErrors.value = result.errors\n\n  if (result.valid) {\n    emit('save', previewStep.value)\n    emit('update:modelValue', previewStep.value)\n  }\n}\n\n// Save as template\nfunction handleSaveTemplate() {\n  if (!selectedTemplate.value) return\n  emit('save-template', buildCustomProtocolTemplate(selectedTemplate.value, editorFields()))\n}\n\n// Handle cancel\nfunction handleCancel() {\n  emit('cancel')\n}\n\nonMounted(() => {\n  if (props.modelValue) {\n    initFromStep(props.modelValue)\n  } else if (availableTemplates.value.length > 0) {\n    selectTemplate(availableTemplates.value[0])\n  }\n})\n\n// Watch for external changes\nwatch(\n  () => props.modelValue,\n  (step) => {\n    if (step) {\n      initFromStep(step)\n    }\n  }\n)\n</script>\n\n<template>\n  <div class=\"mint-protocol-editor\">\n    <!-- Header: the mode is part of the title -->\n    <div class=\"mint-protocol-editor__header\">\n      <span class=\"mint-protocol-editor__title\">\n        {{ mode === 'create' ? 'Create step' : 'Edit step' }}\n      </span>\n      <span v-if=\"stepNumber && stepCount\" class=\"mint-protocol-editor__counter\">{{ stepNumber }} / {{ stepCount }}</span>\n    </div>\n\n    <!-- Form -->\n    <div class=\"mint-protocol-editor__form\">\n      <FormField label=\"Template\" :field-id=\"`${fieldId}-template`\" layout=\"row\">\n        <BaseSelect\n          searchable\n          size=\"sm\"\n          :aria-labelledby=\"`${fieldId}-template-label`\"\n          :model-value=\"selectedTemplateId ?? undefined\"\n          :options=\"templateOptions\"\n          placeholder=\"Select template…\"\n          search-placeholder=\"Search templates…\"\n          @update:model-value=\"handleTemplateChange\"\n        />\n      </FormField>\n\n      <FormField label=\"Step name\" required :error=\"validationErrors.name\" :html-for=\"`${fieldId}-name`\" layout=\"row\">\n        <BaseInput\n          :id=\"`${fieldId}-name`\"\n          v-model=\"stepName\"\n          size=\"sm\"\n          placeholder=\"Enter step name\"\n          :invalid=\"!!validationErrors.name\"\n        />\n      </FormField>\n\n      <!-- Dynamic parameters -->\n      <template v-if=\"selectedTemplate\">\n        <ProtocolStepParameterField\n          v-for=\"param in selectedTemplate.parameters\"\n          :key=\"param.key\"\n          :parameter=\"param\"\n          :model-value=\"parameters[param.key]\"\n          :error=\"validationErrors[param.key]\"\n          @update:model-value=\"handleParamChange(param.key, $event)\"\n        />\n      </template>\n\n      <FormField label=\"Description\" :html-for=\"`${fieldId}-description`\" layout=\"row\">\n        <BaseInput\n          type=\"textarea\"\n          :id=\"`${fieldId}-description`\"\n          v-model=\"stepDescription\"\n          placeholder=\"Optional step description\"\n          :rows=\"2\"\n        />\n      </FormField>\n    </div>\n\n    <!-- Preview -->\n    <div v-if=\"showPreview && previewStep\" class=\"mint-protocol-editor__preview\">\n      <div class=\"mint-protocol-editor__preview-title\">Preview</div>\n      <div class=\"mint-protocol-editor__preview-card\">\n        <div class=\"mint-protocol-editor__preview-icon\">\n          <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n            <path\n              stroke-linecap=\"round\"\n              stroke-linejoin=\"round\"\n              stroke-width=\"2\"\n              :d=\"stepTypeIcons[previewStep.type]\"\n            />\n          </svg>\n        </div>\n        <div class=\"mint-protocol-editor__preview-content\">\n          <div class=\"mint-protocol-editor__preview-name\">{{ previewStep.name }}</div>\n          <div v-if=\"previewParams\" class=\"mint-protocol-editor__preview-params\">\n            {{ previewParams }}\n          </div>\n        </div>\n        <div v-if=\"previewStep.duration\" class=\"mint-protocol-editor__preview-duration\">\n          {{ formatDuration(previewStep.duration) }}\n        </div>\n      </div>\n    </div>\n\n    <!-- Actions -->\n    <div class=\"mint-protocol-editor__actions\">\n      <BaseButton variant=\"ghost\" size=\"sm\" @click=\"handleSaveTemplate\">\n        Save as template\n      </BaseButton>\n      <div class=\"mint-protocol-editor__actions-spacer\" />\n      <BaseButton variant=\"secondary\" size=\"sm\" @click=\"handleCancel\">\n        Cancel\n      </BaseButton>\n      <BaseButton variant=\"primary\" size=\"sm\" :disabled=\"!selectedTemplate\" @click=\"handleSave\">\n        {{ mode === 'create' ? 'Add step' : 'Save changes' }}\n      </BaseButton>\n    </div>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Read-only display of a numeric measurement in plain, scientific (×10ⁿ), or SI-prefix compact notation with optional unit and copy-to-clipboard. */\nimport { computed, ref } from 'vue'\nimport type { NumberNotation } from '../types'\n\ninterface Props {\n  value: number\n  precision?: number\n  notation?: NumberNotation\n  unit?: string\n  copyable?: boolean\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  precision: 3,\n  notation: 'auto',\n  copyable: false,\n})\n\nconst copied = ref(false)\nlet copiedTimer: ReturnType<typeof setTimeout> | undefined\n\nconst SI_SUFFIXES: [number, string][] = [\n  [1e12, 'T'],\n  [1e9, 'G'],\n  [1e6, 'M'],\n  [1e3, 'k'],\n  [1e-3, 'm'],\n  [1e-6, '\\u00B5'],\n  [1e-9, 'n'],\n  [1e-12, 'p'],\n]\n\nfunction roundToPrecision(n: number, digits: number): string {\n  return n.toFixed(digits).replace(/\\.?0+$/, '') || '0'\n}\n\ninterface FormattedNumber {\n  type: 'plain' | 'scientific' | 'compact'\n  mantissa?: string\n  exponent?: number\n  exponentStr?: string\n  plain?: string\n  suffix?: string\n}\n\nconst formatted = computed<FormattedNumber>(() => {\n  const v = props.value\n\n  if (!Number.isFinite(v)) return { type: 'plain', plain: '' }\n  if (v === 0) return { type: 'plain', plain: '0' }\n\n  const absV = Math.abs(v)\n\n  if (props.notation === 'compact') {\n    for (const [threshold, suffix] of SI_SUFFIXES) {\n      if (absV >= threshold * 0.999) {\n        return {\n          type: 'compact',\n          plain: roundToPrecision(v / threshold, props.precision),\n          suffix,\n        }\n      }\n    }\n    return { type: 'plain', plain: roundToPrecision(v, props.precision) }\n  }\n\n  const useScientific =\n    props.notation === 'scientific' ||\n    props.notation === 'engineering' ||\n    (props.notation === 'auto' && (absV < 0.01 || absV >= 10000))\n\n  if (!useScientific) {\n    return { type: 'plain', plain: roundToPrecision(v, props.precision) }\n  }\n\n  let exp = Math.floor(Math.log10(absV))\n\n  if (props.notation === 'engineering') {\n    exp = Math.floor(exp / 3) * 3\n  }\n\n  const mantissa = v / Math.pow(10, exp)\n  const mantissaStr = roundToPrecision(mantissa, props.precision)\n\n  return {\n    type: 'scientific',\n    mantissa: mantissaStr,\n    exponent: exp,\n    exponentStr: String(exp).replace('-', '\\u2212'), // raised by CSS; true minus sign\n  }\n})\n\nconst specialDisplay = computed(() => {\n  if (Number.isNaN(props.value)) return 'NaN'\n  if (props.value === Infinity) return '\\u221E'\n  if (props.value === -Infinity) return '-\\u221E'\n  return null\n})\n\nconst plainTextValue = computed(() => {\n  if (specialDisplay.value) return specialDisplay.value\n  const f = formatted.value\n  let text: string\n  if (f.type === 'scientific') {\n    text = `${f.mantissa}e${f.exponent}`\n  } else if (f.type === 'compact') {\n    text = `${f.plain}${f.suffix ?? ''}`\n  } else {\n    text = f.plain ?? '0'\n  }\n  if (props.unit) text += ` ${props.unit}`\n  return text\n})\n\nconst rootEl = ref<HTMLElement>()\n\n/** A selection inside the number copies the same canonical string as the button; a wider one is left to the browser. */\nfunction onSelectionCopy(event: ClipboardEvent) {\n  const selection = document.getSelection()\n  const root = rootEl.value\n  if (!selection || selection.isCollapsed || !root?.contains(selection.anchorNode) || !root.contains(selection.focusNode)) return\n  event.clipboardData?.setData('text/plain', plainTextValue.value)\n  event.preventDefault()\n}\n\nasync function copyToClipboard() {\n  try {\n    await navigator.clipboard.writeText(plainTextValue.value)\n    copied.value = true\n    clearTimeout(copiedTimer)\n    copiedTimer = setTimeout(() => { copied.value = false }, 1500)\n  } catch {\n    // clipboard not available\n  }\n}\n</script>\n\n<template>\n  <span ref=\"rootEl\" class=\"mint-sci-number\" @copy=\"onSelectionCopy\">\n    <!-- Special values: NaN, Infinity -->\n    <template v-if=\"specialDisplay\">\n      <span class=\"mint-sci-number__plain\">{{ specialDisplay }}</span>\n    </template>\n\n    <!-- Scientific / Engineering notation -->\n    <template v-else-if=\"formatted.type === 'scientific'\">\n      <span class=\"mint-sci-number__mantissa\">{{ formatted.mantissa }}</span>\n      <span class=\"mint-sci-number__times\">&times;</span>\n      <span class=\"mint-sci-number__base\">10</span>\n      <!-- The raised digits are CSS-generated so no selection copies \"1023\"; the hidden \"^n\" carries the value with an ASCII minus. -->\n      <span class=\"mint-sci-number__sr\">^{{ formatted.exponent }}</span>\n      <span class=\"mint-sci-number__exponent\" :data-exponent=\"formatted.exponentStr\" aria-hidden=\"true\" />\n    </template>\n\n    <!-- Compact notation with SI suffix -->\n    <template v-else-if=\"formatted.type === 'compact'\">\n      <span class=\"mint-sci-number__plain\">{{ formatted.plain }}</span>\n      <span v-if=\"formatted.suffix\" class=\"mint-sci-number__suffix\">{{ formatted.suffix }}</span>\n    </template>\n\n    <!-- Plain number -->\n    <template v-else>\n      <span class=\"mint-sci-number__plain\">{{ formatted.plain }}</span>\n    </template>\n\n    <!-- Unit -->\n    <span v-if=\"unit\" class=\"mint-sci-number__unit\">{{ unit }}</span>\n\n    <!-- Copy button -->\n    <button\n      v-if=\"copyable\"\n      :class=\"['mint-sci-number__copy-btn', { 'mint-sci-number__copy-btn--copied': copied }]\"\n      type=\"button\"\n      title=\"Copy value\"\n      aria-label=\"Copy value\"\n      @click.stop=\"copyToClipboard\"\n    >\n      <svg v-if=\"!copied\" width=\"14\" height=\"14\" viewBox=\"0 0 24 24\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\">\n        <rect x=\"9\" y=\"9\" width=\"13\" height=\"13\" rx=\"2\" ry=\"2\" />\n        <path d=\"M5 15H4a2 2 0 0 1-2-2V4a2 2 0 0 1 2-2h9a2 2 0 0 1 2 2v1\" />\n      </svg>\n      <svg v-else width=\"14\" height=\"14\" viewBox=\"0 0 24 24\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\">\n        <polyline points=\"20 6 9 17 4 12\" />\n      </svg>\n    </button>\n    <span v-if=\"copied\" class=\"mint-sci-number__copied\" role=\"status\">Copied {{ plainTextValue }}</span>\n  </span>\n</template>\n","<script setup lang=\"ts\">\n/** Read-only display of a numeric measurement in plain, scientific (×10ⁿ), or SI-prefix compact notation with optional unit and copy-to-clipboard. */\nimport { computed, ref } from 'vue'\nimport type { NumberNotation } from '../types'\n\ninterface Props {\n  value: number\n  precision?: number\n  notation?: NumberNotation\n  unit?: string\n  copyable?: boolean\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  precision: 3,\n  notation: 'auto',\n  copyable: false,\n})\n\nconst copied = ref(false)\nlet copiedTimer: ReturnType<typeof setTimeout> | undefined\n\nconst SI_SUFFIXES: [number, string][] = [\n  [1e12, 'T'],\n  [1e9, 'G'],\n  [1e6, 'M'],\n  [1e3, 'k'],\n  [1e-3, 'm'],\n  [1e-6, '\\u00B5'],\n  [1e-9, 'n'],\n  [1e-12, 'p'],\n]\n\nfunction roundToPrecision(n: number, digits: number): string {\n  return n.toFixed(digits).replace(/\\.?0+$/, '') || '0'\n}\n\ninterface FormattedNumber {\n  type: 'plain' | 'scientific' | 'compact'\n  mantissa?: string\n  exponent?: number\n  exponentStr?: string\n  plain?: string\n  suffix?: string\n}\n\nconst formatted = computed<FormattedNumber>(() => {\n  const v = props.value\n\n  if (!Number.isFinite(v)) return { type: 'plain', plain: '' }\n  if (v === 0) return { type: 'plain', plain: '0' }\n\n  const absV = Math.abs(v)\n\n  if (props.notation === 'compact') {\n    for (const [threshold, suffix] of SI_SUFFIXES) {\n      if (absV >= threshold * 0.999) {\n        return {\n          type: 'compact',\n          plain: roundToPrecision(v / threshold, props.precision),\n          suffix,\n        }\n      }\n    }\n    return { type: 'plain', plain: roundToPrecision(v, props.precision) }\n  }\n\n  const useScientific =\n    props.notation === 'scientific' ||\n    props.notation === 'engineering' ||\n    (props.notation === 'auto' && (absV < 0.01 || absV >= 10000))\n\n  if (!useScientific) {\n    return { type: 'plain', plain: roundToPrecision(v, props.precision) }\n  }\n\n  let exp = Math.floor(Math.log10(absV))\n\n  if (props.notation === 'engineering') {\n    exp = Math.floor(exp / 3) * 3\n  }\n\n  const mantissa = v / Math.pow(10, exp)\n  const mantissaStr = roundToPrecision(mantissa, props.precision)\n\n  return {\n    type: 'scientific',\n    mantissa: mantissaStr,\n    exponent: exp,\n    exponentStr: String(exp).replace('-', '\\u2212'), // raised by CSS; true minus sign\n  }\n})\n\nconst specialDisplay = computed(() => {\n  if (Number.isNaN(props.value)) return 'NaN'\n  if (props.value === Infinity) return '\\u221E'\n  if (props.value === -Infinity) return '-\\u221E'\n  return null\n})\n\nconst plainTextValue = computed(() => {\n  if (specialDisplay.value) return specialDisplay.value\n  const f = formatted.value\n  let text: string\n  if (f.type === 'scientific') {\n    text = `${f.mantissa}e${f.exponent}`\n  } else if (f.type === 'compact') {\n    text = `${f.plain}${f.suffix ?? ''}`\n  } else {\n    text = f.plain ?? '0'\n  }\n  if (props.unit) text += ` ${props.unit}`\n  return text\n})\n\nconst rootEl = ref<HTMLElement>()\n\n/** A selection inside the number copies the same canonical string as the button; a wider one is left to the browser. */\nfunction onSelectionCopy(event: ClipboardEvent) {\n  const selection = document.getSelection()\n  const root = rootEl.value\n  if (!selection || selection.isCollapsed || !root?.contains(selection.anchorNode) || !root.contains(selection.focusNode)) return\n  event.clipboardData?.setData('text/plain', plainTextValue.value)\n  event.preventDefault()\n}\n\nasync function copyToClipboard() {\n  try {\n    await navigator.clipboard.writeText(plainTextValue.value)\n    copied.value = true\n    clearTimeout(copiedTimer)\n    copiedTimer = setTimeout(() => { copied.value = false }, 1500)\n  } catch {\n    // clipboard not available\n  }\n}\n</script>\n\n<template>\n  <span ref=\"rootEl\" class=\"mint-sci-number\" @copy=\"onSelectionCopy\">\n    <!-- Special values: NaN, Infinity -->\n    <template v-if=\"specialDisplay\">\n      <span class=\"mint-sci-number__plain\">{{ specialDisplay }}</span>\n    </template>\n\n    <!-- Scientific / Engineering notation -->\n    <template v-else-if=\"formatted.type === 'scientific'\">\n      <span class=\"mint-sci-number__mantissa\">{{ formatted.mantissa }}</span>\n      <span class=\"mint-sci-number__times\">&times;</span>\n      <span class=\"mint-sci-number__base\">10</span>\n      <!-- The raised digits are CSS-generated so no selection copies \"1023\"; the hidden \"^n\" carries the value with an ASCII minus. -->\n      <span class=\"mint-sci-number__sr\">^{{ formatted.exponent }}</span>\n      <span class=\"mint-sci-number__exponent\" :data-exponent=\"formatted.exponentStr\" aria-hidden=\"true\" />\n    </template>\n\n    <!-- Compact notation with SI suffix -->\n    <template v-else-if=\"formatted.type === 'compact'\">\n      <span class=\"mint-sci-number__plain\">{{ formatted.plain }}</span>\n      <span v-if=\"formatted.suffix\" class=\"mint-sci-number__suffix\">{{ formatted.suffix }}</span>\n    </template>\n\n    <!-- Plain number -->\n    <template v-else>\n      <span class=\"mint-sci-number__plain\">{{ formatted.plain }}</span>\n    </template>\n\n    <!-- Unit -->\n    <span v-if=\"unit\" class=\"mint-sci-number__unit\">{{ unit }}</span>\n\n    <!-- Copy button -->\n    <button\n      v-if=\"copyable\"\n      :class=\"['mint-sci-number__copy-btn', { 'mint-sci-number__copy-btn--copied': copied }]\"\n      type=\"button\"\n      title=\"Copy value\"\n      aria-label=\"Copy value\"\n      @click.stop=\"copyToClipboard\"\n    >\n      <svg v-if=\"!copied\" width=\"14\" height=\"14\" viewBox=\"0 0 24 24\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\">\n        <rect x=\"9\" y=\"9\" width=\"13\" height=\"13\" rx=\"2\" ry=\"2\" />\n        <path d=\"M5 15H4a2 2 0 0 1-2-2V4a2 2 0 0 1 2-2h9a2 2 0 0 1 2 2v1\" />\n      </svg>\n      <svg v-else width=\"14\" height=\"14\" viewBox=\"0 0 24 24\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\">\n        <polyline points=\"20 6 9 17 4 12\" />\n      </svg>\n    </button>\n    <span v-if=\"copied\" class=\"mint-sci-number__copied\" role=\"status\">Copied {{ plainTextValue }}</span>\n  </span>\n</template>\n","<script setup lang=\"ts\">\n/** Compact, overflow-safe display for mass-spectrometry adduct notation. */\nimport { computed } from 'vue'\n\ninterface Props {\n  value?: string | null\n  emptyText?: string\n  variant?: 'inline' | 'badge'\n  tone?: 'default' | 'on-primary' | 'muted'\n  size?: 'xs' | 'inherit'\n  font?: 'mono' | 'sans'\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  value: null,\n  emptyText: '-',\n  variant: 'inline',\n  tone: 'default',\n  size: 'xs',\n  font: 'sans',\n})\n\nconst value = computed(() => props.value?.trim() ?? '')\n// `[M+2H]2+` → base `[M+2H]`, charge `2+`; anything unbracketed stays one run.\nconst parts = computed(() => {\n  const match = /^(.*\\])(\\d*[+\\-−]+\\d*)$/.exec(value.value)\n  return match ? { base: match[1], charge: match[2] } : { base: value.value, charge: '' }\n})\n</script>\n\n<template>\n  <span\n    :class=\"[\n      'mint-adduct-text',\n      `mint-adduct-text--${variant}`,\n      `mint-adduct-text--${tone}`,\n      `mint-adduct-text--${size}`,\n      `mint-adduct-text--${font}`,\n      { 'mint-adduct-text--empty': !value },\n    ]\"\n    :title=\"value || undefined\"\n  >\n    <template v-if=\"value\">{{ parts.base }}<sup v-if=\"parts.charge\" class=\"mint-adduct-text__charge\">{{ parts.charge }}</sup></template>\n    <template v-else>{{ emptyText }}</template>\n  </span>\n</template>\n","<script setup lang=\"ts\">\n/** Compact, overflow-safe display for mass-spectrometry adduct notation. */\nimport { computed } from 'vue'\n\ninterface Props {\n  value?: string | null\n  emptyText?: string\n  variant?: 'inline' | 'badge'\n  tone?: 'default' | 'on-primary' | 'muted'\n  size?: 'xs' | 'inherit'\n  font?: 'mono' | 'sans'\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  value: null,\n  emptyText: '-',\n  variant: 'inline',\n  tone: 'default',\n  size: 'xs',\n  font: 'sans',\n})\n\nconst value = computed(() => props.value?.trim() ?? '')\n// `[M+2H]2+` → base `[M+2H]`, charge `2+`; anything unbracketed stays one run.\nconst parts = computed(() => {\n  const match = /^(.*\\])(\\d*[+\\-−]+\\d*)$/.exec(value.value)\n  return match ? { base: match[1], charge: match[2] } : { base: value.value, charge: '' }\n})\n</script>\n\n<template>\n  <span\n    :class=\"[\n      'mint-adduct-text',\n      `mint-adduct-text--${variant}`,\n      `mint-adduct-text--${tone}`,\n      `mint-adduct-text--${size}`,\n      `mint-adduct-text--${font}`,\n      { 'mint-adduct-text--empty': !value },\n    ]\"\n    :title=\"value || undefined\"\n  >\n    <template v-if=\"value\">{{ parts.base }}<sup v-if=\"parts.charge\" class=\"mint-adduct-text__charge\">{{ parts.charge }}</sup></template>\n    <template v-else>{{ emptyText }}</template>\n  </span>\n</template>\n","<script setup lang=\"ts\">\n/** Renders a chemical formula and optional MS adduct with typographically correct subscripts and charges. */\nimport { computed } from 'vue'\nimport { renderFormulaParts, type FormulaPart } from '../utils/formula'\nimport AdductText from './AdductText.vue'\n\ninterface Props {\n  formula?: string | null\n  inline?: boolean\n  adduct?: string | null\n  emptyText?: string\n  pill?: boolean\n  size?: 'xs' | 'sm' | 'inherit'\n  tone?: 'primary' | 'secondary' | 'muted'\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  formula: null,\n  inline: true,\n  adduct: null,\n  emptyText: '-',\n  pill: false,\n  size: 'inherit',\n  tone: 'primary',\n})\n\nconst formula = computed(() => props.formula?.trim() ?? '')\nconst title = computed(() => [formula.value, props.adduct?.trim()].filter(Boolean).join(' '))\n\nfunction getParts(f: string): FormulaPart[] {\n  return renderFormulaParts(f)\n}\n</script>\n\n<template>\n  <component\n    :is=\"inline ? 'span' : 'div'\"\n    :class=\"[\n      'mint-chem-formula',\n      !inline ? 'mint-chem-formula--block' : '',\n      `mint-chem-formula--${size}`,\n      `mint-chem-formula--${tone}`,\n      { 'mint-chem-formula--pill': pill, 'mint-chem-formula--empty': !formula },\n    ]\"\n    :title=\"title || undefined\"\n  >\n    <template v-if=\"formula\">\n      <span class=\"mint-chem-formula__formula\">\n        <template v-for=\"(part, i) in getParts(formula)\" :key=\"i\">\n          <span v-if=\"part.type === 'element'\" class=\"mint-chem-formula__element\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'subscript'\" class=\"mint-chem-formula__subscript\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'superscript'\" class=\"mint-chem-formula__superscript\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'paren'\" class=\"mint-chem-formula__paren\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'dot'\" class=\"mint-chem-formula__dot\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'charge'\" class=\"mint-chem-formula__charge\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'coefficient'\" class=\"mint-chem-formula__element mint-chem-formula__coefficient\">{{ part.text }}</span>\n        </template>\n      </span>\n      <AdductText v-if=\"adduct\" :value=\"adduct\" size=\"inherit\" />\n      <slot />\n    </template>\n    <span v-else>{{ emptyText }}</span>\n  </component>\n</template>\n","<script setup lang=\"ts\">\n/** Renders a chemical formula and optional MS adduct with typographically correct subscripts and charges. */\nimport { computed } from 'vue'\nimport { renderFormulaParts, type FormulaPart } from '../utils/formula'\nimport AdductText from './AdductText.vue'\n\ninterface Props {\n  formula?: string | null\n  inline?: boolean\n  adduct?: string | null\n  emptyText?: string\n  pill?: boolean\n  size?: 'xs' | 'sm' | 'inherit'\n  tone?: 'primary' | 'secondary' | 'muted'\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  formula: null,\n  inline: true,\n  adduct: null,\n  emptyText: '-',\n  pill: false,\n  size: 'inherit',\n  tone: 'primary',\n})\n\nconst formula = computed(() => props.formula?.trim() ?? '')\nconst title = computed(() => [formula.value, props.adduct?.trim()].filter(Boolean).join(' '))\n\nfunction getParts(f: string): FormulaPart[] {\n  return renderFormulaParts(f)\n}\n</script>\n\n<template>\n  <component\n    :is=\"inline ? 'span' : 'div'\"\n    :class=\"[\n      'mint-chem-formula',\n      !inline ? 'mint-chem-formula--block' : '',\n      `mint-chem-formula--${size}`,\n      `mint-chem-formula--${tone}`,\n      { 'mint-chem-formula--pill': pill, 'mint-chem-formula--empty': !formula },\n    ]\"\n    :title=\"title || undefined\"\n  >\n    <template v-if=\"formula\">\n      <span class=\"mint-chem-formula__formula\">\n        <template v-for=\"(part, i) in getParts(formula)\" :key=\"i\">\n          <span v-if=\"part.type === 'element'\" class=\"mint-chem-formula__element\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'subscript'\" class=\"mint-chem-formula__subscript\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'superscript'\" class=\"mint-chem-formula__superscript\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'paren'\" class=\"mint-chem-formula__paren\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'dot'\" class=\"mint-chem-formula__dot\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'charge'\" class=\"mint-chem-formula__charge\">{{ part.text }}</span>\n          <span v-else-if=\"part.type === 'coefficient'\" class=\"mint-chem-formula__element mint-chem-formula__coefficient\">{{ part.text }}</span>\n        </template>\n      </span>\n      <AdductText v-if=\"adduct\" :value=\"adduct\" size=\"inherit\" />\n      <slot />\n    </template>\n    <span v-else>{{ emptyText }}</span>\n  </component>\n</template>\n","// Private SequenceProgressBar helpers; not part of the public SDK surface since MINT 1.4.\nimport type { SequenceProgress } from './types'\n\nexport function sequenceProgressPercent(progress: SequenceProgress | null | undefined): number {\n  if (!progress || progress.total_samples <= 0) return 0\n  return Math.round(clamp((progress.current_sample / progress.total_samples) * 100, 0, 100))\n}\n\nexport function sequenceSamplesRemaining(progress: SequenceProgress | null | undefined): number {\n  if (!progress) return 0\n  return Math.max(0, progress.total_samples - progress.current_sample)\n}\n\nexport function estimateSequenceRemainingSeconds(\n  progress: SequenceProgress | null | undefined,\n): number | null {\n  if (!progress) return null\n  const samplesLeft = sequenceSamplesRemaining(progress)\n  if (samplesLeft <= 0) return 0\n\n  const explicit = progress.estimated_remaining_seconds\n  if (typeof explicit === 'number' && explicit > 0) return explicit\n\n  const avg = progress.avg_sample_seconds ?? average(progress.sample_durations)\n  if (typeof avg === 'number' && avg > 0) return samplesLeft * avg\n\n  const elapsed = progress.elapsed_seconds ?? 0\n  if (elapsed > 0 && progress.current_sample > 0) {\n    return (elapsed / progress.current_sample) * samplesLeft\n  }\n\n  return null\n}\n\nexport function estimateSequenceFinishDate(\n  progress: SequenceProgress | null | undefined,\n  now = new Date(),\n): Date | null {\n  if (!progress) return null\n\n  const explicit = coerceDate(progress.estimated_finish_time)\n  if (explicit) return explicit\n\n  const remaining = estimateSequenceRemainingSeconds(progress)\n  if (remaining == null || remaining <= 0) return null\n  return new Date(now.getTime() + remaining * 1000)\n}\n\nexport function formatSequenceRemaining(progress: SequenceProgress | null | undefined): string | null {\n  const remaining = estimateSequenceRemainingSeconds(progress)\n  if (remaining == null || remaining <= 0) return null\n\n  const minutes = remaining / 60\n  if (minutes < 1) return `${Math.round(remaining)}s left`\n  if (minutes < 60) return `~${Math.round(minutes)}m left`\n\n  const hours = Math.floor(minutes / 60)\n  const mins = Math.round(minutes % 60)\n  return mins > 0 ? `~${hours}h ${mins}m left` : `~${hours}h left`\n}\n\nexport function formatSequenceEta(\n  progress: SequenceProgress | null | undefined,\n  locale?: Intl.LocalesArgument,\n  options: Intl.DateTimeFormatOptions = {},\n): string | null {\n  const finish = estimateSequenceFinishDate(progress)\n  if (!finish) return null\n  return finish.toLocaleTimeString(locale, {\n    hour: '2-digit',\n    minute: '2-digit',\n    ...options,\n  })\n}\n\nfunction average(values: readonly number[] | undefined): number | null {\n  if (!values?.length) return null\n  const usable = values.filter(value => Number.isFinite(value) && value >= 0)\n  if (usable.length === 0) return null\n  return usable.reduce((sum, value) => sum + value, 0) / usable.length\n}\n\nfunction coerceDate(value: string | Date | null | undefined): Date | null {\n  if (!value) return null\n  const date = value instanceof Date ? value : new Date(value)\n  return Number.isNaN(date.getTime()) ? null : date\n}\n\nfunction clamp(value: number, min: number, max: number): number {\n  return Math.min(max, Math.max(min, value))\n}\n","<script setup lang=\"ts\">\n/** Displays LC/MS or GC/MS acquisition sequence progress with ETA and remaining-time labels. */\nimport { computed } from 'vue'\nimport {\n  formatSequenceEta,\n  formatSequenceRemaining,\n  sequenceProgressPercent,\n} from '../instrument'\nimport type { SequenceProgress } from '../types'\nimport ProgressBar from './ProgressBar.vue'\n\ninterface Props {\n  progress: SequenceProgress\n  compact?: boolean\n  label?: string\n  showEta?: boolean\n  showRemaining?: boolean\n  /** Failed injections so far; shown as \"N failed\" in the head when above 0. */\n  failed?: number\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  compact: false,\n  label: 'samples',\n  showEta: true,\n  showRemaining: true,\n  failed: 0,\n})\n\nconst percent = computed(() => sequenceProgressPercent(props.progress))\nconst remainingLabel = computed(() => formatSequenceRemaining(props.progress))\nconst etaLabel = computed(() => formatSequenceEta(props.progress))\nconst hasFooter = computed(() => {\n  if (props.compact) return false\n  return (props.showRemaining && remainingLabel.value) || (props.showEta && etaLabel.value)\n})\n</script>\n\n<template>\n  <div class=\"mint-sequence-progress\">\n    <div class=\"mint-sequence-progress__header\">\n      <span class=\"mint-sequence-progress__label\">\n        <span class=\"mint-sequence-progress__count\">{{ progress.current_sample }} / {{ progress.total_samples }}</span>\n        {{ label }}\n      </span>\n      <span v-if=\"failed > 0\" class=\"mint-sequence-progress__failed\">{{ failed }} failed</span>\n      <span class=\"mint-sequence-progress__percent\">{{ percent }}%</span>\n    </div>\n\n    <ProgressBar\n      :value=\"percent\"\n      size=\"sm\"\n      aria-label=\"Sequence progress\"\n    />\n\n    <div v-if=\"hasFooter\" class=\"mint-sequence-progress__footer\">\n      <span\n        v-if=\"showRemaining && remainingLabel\"\n        class=\"mint-sequence-progress__remaining\"\n      >\n        {{ remainingLabel }}\n      </span>\n      <span\n        v-if=\"showEta && etaLabel\"\n        class=\"mint-sequence-progress__eta\"\n      >\n        ETA {{ etaLabel }}\n      </span>\n    </div>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Displays LC/MS or GC/MS acquisition sequence progress with ETA and remaining-time labels. */\nimport { computed } from 'vue'\nimport {\n  formatSequenceEta,\n  formatSequenceRemaining,\n  sequenceProgressPercent,\n} from '../instrument'\nimport type { SequenceProgress } from '../types'\nimport ProgressBar from './ProgressBar.vue'\n\ninterface Props {\n  progress: SequenceProgress\n  compact?: boolean\n  label?: string\n  showEta?: boolean\n  showRemaining?: boolean\n  /** Failed injections so far; shown as \"N failed\" in the head when above 0. */\n  failed?: number\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  compact: false,\n  label: 'samples',\n  showEta: true,\n  showRemaining: true,\n  failed: 0,\n})\n\nconst percent = computed(() => sequenceProgressPercent(props.progress))\nconst remainingLabel = computed(() => formatSequenceRemaining(props.progress))\nconst etaLabel = computed(() => formatSequenceEta(props.progress))\nconst hasFooter = computed(() => {\n  if (props.compact) return false\n  return (props.showRemaining && remainingLabel.value) || (props.showEta && etaLabel.value)\n})\n</script>\n\n<template>\n  <div class=\"mint-sequence-progress\">\n    <div class=\"mint-sequence-progress__header\">\n      <span class=\"mint-sequence-progress__label\">\n        <span class=\"mint-sequence-progress__count\">{{ progress.current_sample }} / {{ progress.total_samples }}</span>\n        {{ label }}\n      </span>\n      <span v-if=\"failed > 0\" class=\"mint-sequence-progress__failed\">{{ failed }} failed</span>\n      <span class=\"mint-sequence-progress__percent\">{{ percent }}%</span>\n    </div>\n\n    <ProgressBar\n      :value=\"percent\"\n      size=\"sm\"\n      aria-label=\"Sequence progress\"\n    />\n\n    <div v-if=\"hasFooter\" class=\"mint-sequence-progress__footer\">\n      <span\n        v-if=\"showRemaining && remainingLabel\"\n        class=\"mint-sequence-progress__remaining\"\n      >\n        {{ remainingLabel }}\n      </span>\n      <span\n        v-if=\"showEta && etaLabel\"\n        class=\"mint-sequence-progress__eta\"\n      >\n        ETA {{ etaLabel }}\n      </span>\n    </div>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Status badge for instrument states, plus the platform-derived `never` (no report yet) and `inactive` states. */\nimport { computed } from 'vue'\nimport type { InstrumentBadgeState } from '../types'\n\ninterface Props {\n  state: InstrumentBadgeState | string\n  label?: string\n  pulseWhenRunning?: boolean\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  label: undefined,\n  pulseWhenRunning: true,\n})\n\nconst stateConfig: Record<InstrumentBadgeState, { label: string; tone: string }> = {\n  running: { label: 'Running', tone: 'success' },\n  standby: { label: 'Standby', tone: 'warning' },\n  idle: { label: 'Idle', tone: 'muted' },\n  error: { label: 'Error', tone: 'error' },\n  connected: { label: 'Connected', tone: 'success' },\n  disconnected: { label: 'Offline', tone: 'muted' },\n  never: { label: 'Never reported', tone: 'muted' },\n  inactive: { label: 'Inactive', tone: 'muted' },\n}\n\n/** Hollow or non-dot shapes, so states read without relying on color. */\nconst shapeClass: Partial<Record<InstrumentBadgeState, string>> = {\n  disconnected: 'mint-instrument-state--offline',\n  never: 'mint-instrument-state--never',\n  inactive: 'mint-instrument-state--inactive',\n}\n\nconst normalizedState = computed(() => props.state.toLowerCase())\nconst config = computed(() => {\n  const match = stateConfig[normalizedState.value as InstrumentBadgeState]\n  const raw = normalizedState.value\n  return match ?? { label: raw.charAt(0).toUpperCase() + raw.slice(1), tone: 'muted' }\n})\nconst shouldPulse = computed(() => props.pulseWhenRunning && normalizedState.value === 'running')\n</script>\n\n<template>\n  <span\n    class=\"mint-instrument-state\"\n    :class=\"[\n      `mint-instrument-state--${config.tone}`,\n      { 'mint-instrument-state--pulse': shouldPulse },\n      shapeClass[normalizedState as InstrumentBadgeState],\n    ]\"\n  >\n    <span class=\"mint-instrument-state__dot\" aria-hidden=\"true\" />\n    {{ label ?? config.label }}\n  </span>\n</template>\n","<script setup lang=\"ts\">\n/** Status badge for instrument states, plus the platform-derived `never` (no report yet) and `inactive` states. */\nimport { computed } from 'vue'\nimport type { InstrumentBadgeState } from '../types'\n\ninterface Props {\n  state: InstrumentBadgeState | string\n  label?: string\n  pulseWhenRunning?: boolean\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  label: undefined,\n  pulseWhenRunning: true,\n})\n\nconst stateConfig: Record<InstrumentBadgeState, { label: string; tone: string }> = {\n  running: { label: 'Running', tone: 'success' },\n  standby: { label: 'Standby', tone: 'warning' },\n  idle: { label: 'Idle', tone: 'muted' },\n  error: { label: 'Error', tone: 'error' },\n  connected: { label: 'Connected', tone: 'success' },\n  disconnected: { label: 'Offline', tone: 'muted' },\n  never: { label: 'Never reported', tone: 'muted' },\n  inactive: { label: 'Inactive', tone: 'muted' },\n}\n\n/** Hollow or non-dot shapes, so states read without relying on color. */\nconst shapeClass: Partial<Record<InstrumentBadgeState, string>> = {\n  disconnected: 'mint-instrument-state--offline',\n  never: 'mint-instrument-state--never',\n  inactive: 'mint-instrument-state--inactive',\n}\n\nconst normalizedState = computed(() => props.state.toLowerCase())\nconst config = computed(() => {\n  const match = stateConfig[normalizedState.value as InstrumentBadgeState]\n  const raw = normalizedState.value\n  return match ?? { label: raw.charAt(0).toUpperCase() + raw.slice(1), tone: 'muted' }\n})\nconst shouldPulse = computed(() => props.pulseWhenRunning && normalizedState.value === 'running')\n</script>\n\n<template>\n  <span\n    class=\"mint-instrument-state\"\n    :class=\"[\n      `mint-instrument-state--${config.tone}`,\n      { 'mint-instrument-state--pulse': shouldPulse },\n      shapeClass[normalizedState as InstrumentBadgeState],\n    ]\"\n  >\n    <span class=\"mint-instrument-state__dot\" aria-hidden=\"true\" />\n    {{ label ?? config.label }}\n  </span>\n</template>\n","<script setup lang=\"ts\">\n/**\n * Renders the typed panels of an instrument's live status in one card, one tab per panel.\n *\n * `kv` panels render as a key/value list, `table`, `text` and `json` through\n * `GeneratedResultRenderer`, and `bar` as a Plotly bar chart that shows one series at a\n * time. The selected tab and series are kept by title and name across live updates; tabs\n * are keyed by position, so panels that share a title stay separate.\n *\n * @example\n * ```vue\n * <InstrumentStatusPanels :panels=\"status.panels\" meta=\"from MS Planner · 12 s ago\" />\n * ```\n */\nimport { computed, ref } from 'vue'\nimport type { StatusPanel } from '../types'\nimport type { GeneratedAnalysisResult } from '../types/generated-ui'\nimport BaseTabs from './BaseTabs.vue'\nimport GeneratedResultRenderer from './GeneratedResultRenderer.vue'\nimport PlotlyChart from './PlotlyChart.vue'\nimport SectionCard from './SectionCard.vue'\nimport SegmentedControl from './SegmentedControl.vue'\n\ninterface Props {\n  panels: StatusPanel[]\n  title?: string\n  /** Monospace meta next to the title, e.g. the reporting plugin and report age. */\n  meta?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  title: 'Live data',\n  meta: undefined,\n})\n\n/** The selected panel's title and, among panels with that title, its occurrence. */\nconst selected = ref<{ title: string, occurrence: number } | null>(null)\nconst selectedSeries = ref('')\n\nconst tabs = computed(() => props.panels.map((item, index) => ({ value: index, label: item.title })))\nconst panelIndex = computed(() => {\n  const pick = selected.value\n  const matching = props.panels.flatMap((item, index) => (item.title === pick?.title ? [index] : []))\n  return matching[pick?.occurrence ?? 0] ?? 0\n})\nconst panel = computed(() => props.panels[panelIndex.value])\n\nfunction selectTab(index: number) {\n  const title = props.panels[index]?.title ?? ''\n  selected.value = { title, occurrence: props.panels.slice(0, index).filter(item => item.title === title).length }\n}\n\nconst result = computed<GeneratedAnalysisResult | null>(() => {\n  const current = panel.value\n  if (current?.kind === 'table') return { kind: 'table', columns: current.columns, rows: current.rows }\n  if (current?.kind === 'text') return { kind: 'text', text: current.text }\n  if (current?.kind === 'json') return { kind: 'json', value: current.value }\n  return null\n})\n\nconst bar = computed(() => (panel.value?.kind === 'bar' ? panel.value : null))\nconst series = computed(() => bar.value?.series.find(item => item.name === selectedSeries.value) ?? bar.value?.series[0])\nconst traces = computed(() => (bar.value && series.value\n  ? [{ type: 'bar' as const, x: bar.value.categories, y: series.value.values, name: series.value.name }]\n  : []))\nconst layout = computed(() => ({\n  showlegend: false,\n  colorway: ['var(--color-primary)'],\n  margin: { t: 8, r: 8, b: 32, l: 56 },\n  yaxis: { title: { text: [series.value?.name, series.value?.unit && `(${series.value.unit})`].filter(Boolean).join(' ') } },\n}))\n\nfunction formatValue(value: string | number | boolean | null): string {\n  return value === null ? '—' : String(value)\n}\n</script>\n\n<template>\n  <SectionCard :title=\"title\" :count=\"meta\" divider=\"light\" class=\"mint-status-panels\">\n    <BaseTabs\n      :model-value=\"panelIndex\" :options=\"tabs\" class=\"mint-status-panels__tabs\"\n      @update:model-value=\"selectTab(Number($event))\"\n    />\n\n    <dl v-if=\"panel?.kind === 'kv'\" class=\"mint-status-panels__kv\">\n      <div v-for=\"([key, value], index) in panel.items\" :key=\"index\" class=\"mint-status-panels__kv-row\">\n        <dt class=\"mint-status-panels__kv-key\">{{ key }}</dt>\n        <dd class=\"mint-status-panels__kv-value\">{{ formatValue(value) }}</dd>\n      </div>\n    </dl>\n\n    <div v-else-if=\"result\" class=\"mint-status-panels__body\">\n      <GeneratedResultRenderer :result=\"result\" :searchable=\"false\" />\n    </div>\n\n    <div v-else-if=\"bar\" class=\"mint-status-panels__body mint-status-panels__bar\">\n      <SegmentedControl\n        v-if=\"bar.series.length > 1\" class=\"mint-status-panels__series\"\n        :model-value=\"series?.name ?? ''\" :options=\"bar.series.map(item => item.name)\" size=\"sm\"\n        @update:model-value=\"selectedSeries = String($event)\"\n      />\n      <PlotlyChart :data=\"traces\" :layout=\"layout\" variant=\"frame\" :height=\"240\" :header-legend=\"false\" :aria-label=\"bar.title\" />\n    </div>\n  </SectionCard>\n</template>\n\n<style scoped>\n.mint-status-panels__tabs { padding: 0 var(--mint-section-card-inset); }\n.mint-status-panels__body { padding: 0.75rem var(--mint-section-card-inset); }\n.mint-status-panels__bar { display: flex; flex-direction: column; gap: 0.5rem; }\n.mint-status-panels__series { align-self: flex-end; }\n.mint-status-panels__kv { margin: 0; padding: 0.25rem var(--mint-section-card-inset) 0.5rem; }\n.mint-status-panels__kv-row {\n  display: flex;\n  align-items: baseline;\n  justify-content: space-between;\n  gap: 0.75rem;\n  padding: 0.4375rem 0;\n  border-bottom: 1px solid var(--border-light);\n}\n.mint-status-panels__kv-row:last-child { border-bottom: 0; }\n.mint-status-panels__kv-key { font-size: 0.75rem; color: var(--text-secondary); }\n.mint-status-panels__kv-value {\n  margin: 0;\n  min-width: 0;\n  font-family: var(--font-mono);\n  font-variant-numeric: tabular-nums;\n  font-size: 0.75rem;\n  color: var(--text-primary);\n  text-align: right;\n  overflow-wrap: anywhere;\n}\n</style>\n","<script setup lang=\"ts\">\n/**\n * Renders the typed panels of an instrument's live status in one card, one tab per panel.\n *\n * `kv` panels render as a key/value list, `table`, `text` and `json` through\n * `GeneratedResultRenderer`, and `bar` as a Plotly bar chart that shows one series at a\n * time. The selected tab and series are kept by title and name across live updates; tabs\n * are keyed by position, so panels that share a title stay separate.\n *\n * @example\n * ```vue\n * <InstrumentStatusPanels :panels=\"status.panels\" meta=\"from MS Planner · 12 s ago\" />\n * ```\n */\nimport { computed, ref } from 'vue'\nimport type { StatusPanel } from '../types'\nimport type { GeneratedAnalysisResult } from '../types/generated-ui'\nimport BaseTabs from './BaseTabs.vue'\nimport GeneratedResultRenderer from './GeneratedResultRenderer.vue'\nimport PlotlyChart from './PlotlyChart.vue'\nimport SectionCard from './SectionCard.vue'\nimport SegmentedControl from './SegmentedControl.vue'\n\ninterface Props {\n  panels: StatusPanel[]\n  title?: string\n  /** Monospace meta next to the title, e.g. the reporting plugin and report age. */\n  meta?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  title: 'Live data',\n  meta: undefined,\n})\n\n/** The selected panel's title and, among panels with that title, its occurrence. */\nconst selected = ref<{ title: string, occurrence: number } | null>(null)\nconst selectedSeries = ref('')\n\nconst tabs = computed(() => props.panels.map((item, index) => ({ value: index, label: item.title })))\nconst panelIndex = computed(() => {\n  const pick = selected.value\n  const matching = props.panels.flatMap((item, index) => (item.title === pick?.title ? [index] : []))\n  return matching[pick?.occurrence ?? 0] ?? 0\n})\nconst panel = computed(() => props.panels[panelIndex.value])\n\nfunction selectTab(index: number) {\n  const title = props.panels[index]?.title ?? ''\n  selected.value = { title, occurrence: props.panels.slice(0, index).filter(item => item.title === title).length }\n}\n\nconst result = computed<GeneratedAnalysisResult | null>(() => {\n  const current = panel.value\n  if (current?.kind === 'table') return { kind: 'table', columns: current.columns, rows: current.rows }\n  if (current?.kind === 'text') return { kind: 'text', text: current.text }\n  if (current?.kind === 'json') return { kind: 'json', value: current.value }\n  return null\n})\n\nconst bar = computed(() => (panel.value?.kind === 'bar' ? panel.value : null))\nconst series = computed(() => bar.value?.series.find(item => item.name === selectedSeries.value) ?? bar.value?.series[0])\nconst traces = computed(() => (bar.value && series.value\n  ? [{ type: 'bar' as const, x: bar.value.categories, y: series.value.values, name: series.value.name }]\n  : []))\nconst layout = computed(() => ({\n  showlegend: false,\n  colorway: ['var(--color-primary)'],\n  margin: { t: 8, r: 8, b: 32, l: 56 },\n  yaxis: { title: { text: [series.value?.name, series.value?.unit && `(${series.value.unit})`].filter(Boolean).join(' ') } },\n}))\n\nfunction formatValue(value: string | number | boolean | null): string {\n  return value === null ? '—' : String(value)\n}\n</script>\n\n<template>\n  <SectionCard :title=\"title\" :count=\"meta\" divider=\"light\" class=\"mint-status-panels\">\n    <BaseTabs\n      :model-value=\"panelIndex\" :options=\"tabs\" class=\"mint-status-panels__tabs\"\n      @update:model-value=\"selectTab(Number($event))\"\n    />\n\n    <dl v-if=\"panel?.kind === 'kv'\" class=\"mint-status-panels__kv\">\n      <div v-for=\"([key, value], index) in panel.items\" :key=\"index\" class=\"mint-status-panels__kv-row\">\n        <dt class=\"mint-status-panels__kv-key\">{{ key }}</dt>\n        <dd class=\"mint-status-panels__kv-value\">{{ formatValue(value) }}</dd>\n      </div>\n    </dl>\n\n    <div v-else-if=\"result\" class=\"mint-status-panels__body\">\n      <GeneratedResultRenderer :result=\"result\" :searchable=\"false\" />\n    </div>\n\n    <div v-else-if=\"bar\" class=\"mint-status-panels__body mint-status-panels__bar\">\n      <SegmentedControl\n        v-if=\"bar.series.length > 1\" class=\"mint-status-panels__series\"\n        :model-value=\"series?.name ?? ''\" :options=\"bar.series.map(item => item.name)\" size=\"sm\"\n        @update:model-value=\"selectedSeries = String($event)\"\n      />\n      <PlotlyChart :data=\"traces\" :layout=\"layout\" variant=\"frame\" :height=\"240\" :header-legend=\"false\" :aria-label=\"bar.title\" />\n    </div>\n  </SectionCard>\n</template>\n\n<style scoped>\n.mint-status-panels__tabs { padding: 0 var(--mint-section-card-inset); }\n.mint-status-panels__body { padding: 0.75rem var(--mint-section-card-inset); }\n.mint-status-panels__bar { display: flex; flex-direction: column; gap: 0.5rem; }\n.mint-status-panels__series { align-self: flex-end; }\n.mint-status-panels__kv { margin: 0; padding: 0.25rem var(--mint-section-card-inset) 0.5rem; }\n.mint-status-panels__kv-row {\n  display: flex;\n  align-items: baseline;\n  justify-content: space-between;\n  gap: 0.75rem;\n  padding: 0.4375rem 0;\n  border-bottom: 1px solid var(--border-light);\n}\n.mint-status-panels__kv-row:last-child { border-bottom: 0; }\n.mint-status-panels__kv-key { font-size: 0.75rem; color: var(--text-secondary); }\n.mint-status-panels__kv-value {\n  margin: 0;\n  min-width: 0;\n  font-family: var(--font-mono);\n  font-variant-numeric: tabular-nums;\n  font-size: 0.75rem;\n  color: var(--text-primary);\n  text-align: right;\n  overflow-wrap: anywhere;\n}\n</style>\n","<script setup lang=\"ts\">\n/** Paired start/end time pickers that validate range order (end must follow start) and display computed duration. */\nimport { computed, watch } from 'vue'\nimport type { TimeRange, TimeSlotDisabledFn } from '../types/components'\nimport DatePicker from './DatePicker.vue'\nimport { durationMinutes, compareTime } from '../utils/time'\n\ninterface Props {\n  modelValue?: TimeRange\n  disabled?: boolean\n  invalid?: boolean\n  size?: 'sm' | 'md' | 'lg'\n  min?: string\n  max?: string\n  step?: number\n  format?: '12h' | '24h'\n  showDuration?: boolean\n  blockedRanges?: TimeRange[]\n  /** Marks slots unavailable in both pickers; a returned string is shown inline as the reason. */\n  disabledSlots?: TimeSlotDisabledFn\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  disabled: false,\n  invalid: false,\n  size: 'md',\n  step: 15,\n  format: '24h',\n  showDuration: true,\n  blockedRanges: () => [],\n})\n\nconst emit = defineEmits<{\n  'update:modelValue': [value: TimeRange | undefined]\n  /** Emitted on mount and whenever the order check flips; `false` while end ≤ start. */\n  'validity-change': [valid: boolean]\n}>()\n\nconst startValue = computed(() => props.modelValue?.start)\nconst endValue = computed(() => props.modelValue?.end)\n\nconst duration = computed(() => {\n  if (!props.modelValue?.start || !props.modelValue?.end) return null\n  return durationMinutes(props.modelValue.start, props.modelValue.end)\n})\n\nconst isInvalid = computed(() => {\n  if (!props.modelValue?.start || !props.modelValue?.end) return false\n  return compareTime(props.modelValue.start, props.modelValue.end) >= 0\n})\n\n// Always shown; an incomplete or inverted range reads \"—\", never a negative span.\nconst durationLabel = computed(() => {\n  if (duration.value === null || isInvalid.value) return '—'\n  const hours = Math.floor(duration.value / 60)\n  const minutes = duration.value % 60\n  return [hours && `${hours} h`, minutes && `${minutes} min`].filter(Boolean).join(' ')\n})\n\nconst isValid = computed(() => !isInvalid.value)\n\nwatch(isValid, (valid) => emit('validity-change', valid), { immediate: true })\n\ndefineExpose({ isValid })\n\nconst endMin = computed(() => {\n  if (props.modelValue?.start) return props.modelValue.start\n  return props.min\n})\n\nfunction onStartChange(value: string | undefined) {\n  if (!value) {\n    emit('update:modelValue', undefined)\n    return\n  }\n  const end = props.modelValue?.end || ''\n  emit('update:modelValue', { start: value, end })\n}\n\nfunction onEndChange(value: string | undefined) {\n  if (!value) {\n    emit('update:modelValue', undefined)\n    return\n  }\n  const start = props.modelValue?.start || ''\n  emit('update:modelValue', { start, end: value })\n}\n</script>\n\n<template>\n  <div class=\"mint-time-range\">\n    <div class=\"mint-time-range__start\">\n      <DatePicker\n        type=\"time\"\n        :model-value=\"startValue\"\n        :disabled=\"disabled\"\n        :invalid=\"invalid || isInvalid\"\n        :size=\"size\"\n        :min=\"min\"\n        :max=\"max\"\n        :step=\"step\"\n        :format=\"format\"\n        :disabled-slots=\"disabledSlots\"\n        placeholder=\"Start\"\n        @update:model-value=\"onStartChange\"\n      />\n    </div>\n\n    <span class=\"mint-time-range__separator\" aria-hidden=\"true\">–</span>\n\n    <div class=\"mint-time-range__end\">\n      <DatePicker\n        type=\"time\"\n        :model-value=\"endValue\"\n        :disabled=\"disabled\"\n        :invalid=\"invalid || isInvalid\"\n        :size=\"size\"\n        :min=\"endMin\"\n        :max=\"max\"\n        :step=\"step\"\n        :format=\"format\"\n        :disabled-slots=\"disabledSlots\"\n        placeholder=\"End\"\n        @update:model-value=\"onEndChange\"\n      />\n    </div>\n\n    <span\n      v-if=\"showDuration\"\n      :class=\"['mint-time-range__duration', isInvalid ? 'mint-time-range__duration--error' : '']\"\n    >\n      {{ durationLabel }}\n    </span>\n\n    <p v-if=\"isInvalid\" class=\"mint-time-range__error\" role=\"alert\">\n      End time must be after start time\n    </p>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Paired start/end time pickers that validate range order (end must follow start) and display computed duration. */\nimport { computed, watch } from 'vue'\nimport type { TimeRange, TimeSlotDisabledFn } from '../types/components'\nimport DatePicker from './DatePicker.vue'\nimport { durationMinutes, compareTime } from '../utils/time'\n\ninterface Props {\n  modelValue?: TimeRange\n  disabled?: boolean\n  invalid?: boolean\n  size?: 'sm' | 'md' | 'lg'\n  min?: string\n  max?: string\n  step?: number\n  format?: '12h' | '24h'\n  showDuration?: boolean\n  blockedRanges?: TimeRange[]\n  /** Marks slots unavailable in both pickers; a returned string is shown inline as the reason. */\n  disabledSlots?: TimeSlotDisabledFn\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  disabled: false,\n  invalid: false,\n  size: 'md',\n  step: 15,\n  format: '24h',\n  showDuration: true,\n  blockedRanges: () => [],\n})\n\nconst emit = defineEmits<{\n  'update:modelValue': [value: TimeRange | undefined]\n  /** Emitted on mount and whenever the order check flips; `false` while end ≤ start. */\n  'validity-change': [valid: boolean]\n}>()\n\nconst startValue = computed(() => props.modelValue?.start)\nconst endValue = computed(() => props.modelValue?.end)\n\nconst duration = computed(() => {\n  if (!props.modelValue?.start || !props.modelValue?.end) return null\n  return durationMinutes(props.modelValue.start, props.modelValue.end)\n})\n\nconst isInvalid = computed(() => {\n  if (!props.modelValue?.start || !props.modelValue?.end) return false\n  return compareTime(props.modelValue.start, props.modelValue.end) >= 0\n})\n\n// Always shown; an incomplete or inverted range reads \"—\", never a negative span.\nconst durationLabel = computed(() => {\n  if (duration.value === null || isInvalid.value) return '—'\n  const hours = Math.floor(duration.value / 60)\n  const minutes = duration.value % 60\n  return [hours && `${hours} h`, minutes && `${minutes} min`].filter(Boolean).join(' ')\n})\n\nconst isValid = computed(() => !isInvalid.value)\n\nwatch(isValid, (valid) => emit('validity-change', valid), { immediate: true })\n\ndefineExpose({ isValid })\n\nconst endMin = computed(() => {\n  if (props.modelValue?.start) return props.modelValue.start\n  return props.min\n})\n\nfunction onStartChange(value: string | undefined) {\n  if (!value) {\n    emit('update:modelValue', undefined)\n    return\n  }\n  const end = props.modelValue?.end || ''\n  emit('update:modelValue', { start: value, end })\n}\n\nfunction onEndChange(value: string | undefined) {\n  if (!value) {\n    emit('update:modelValue', undefined)\n    return\n  }\n  const start = props.modelValue?.start || ''\n  emit('update:modelValue', { start, end: value })\n}\n</script>\n\n<template>\n  <div class=\"mint-time-range\">\n    <div class=\"mint-time-range__start\">\n      <DatePicker\n        type=\"time\"\n        :model-value=\"startValue\"\n        :disabled=\"disabled\"\n        :invalid=\"invalid || isInvalid\"\n        :size=\"size\"\n        :min=\"min\"\n        :max=\"max\"\n        :step=\"step\"\n        :format=\"format\"\n        :disabled-slots=\"disabledSlots\"\n        placeholder=\"Start\"\n        @update:model-value=\"onStartChange\"\n      />\n    </div>\n\n    <span class=\"mint-time-range__separator\" aria-hidden=\"true\">–</span>\n\n    <div class=\"mint-time-range__end\">\n      <DatePicker\n        type=\"time\"\n        :model-value=\"endValue\"\n        :disabled=\"disabled\"\n        :invalid=\"invalid || isInvalid\"\n        :size=\"size\"\n        :min=\"endMin\"\n        :max=\"max\"\n        :step=\"step\"\n        :format=\"format\"\n        :disabled-slots=\"disabledSlots\"\n        placeholder=\"End\"\n        @update:model-value=\"onEndChange\"\n      />\n    </div>\n\n    <span\n      v-if=\"showDuration\"\n      :class=\"['mint-time-range__duration', isInvalid ? 'mint-time-range__duration--error' : '']\"\n    >\n      {{ durationLabel }}\n    </span>\n\n    <p v-if=\"isInvalid\" class=\"mint-time-range__error\" role=\"alert\">\n      End time must be after start time\n    </p>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Card displaying a lab resource with availability status, specs, tags, and a book action. */\nimport { computed } from 'vue'\nimport BasePill from './BasePill.vue'\nimport type { ResourceStatus, ResourceSpec } from '../types/components'\n\ninterface Props {\n  name: string\n  description?: string\n  status?: ResourceStatus\n  image?: string\n  location?: string\n  specs?: ResourceSpec[]\n  tags?: string[]\n  nextAvailable?: string\n  showBookAction?: boolean\n  compact?: boolean\n  size?: 'sm' | 'md' | 'lg'\n  statusLabel?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  status: 'available',\n  specs: () => [],\n  tags: () => [],\n  showBookAction: true,\n  compact: false,\n  size: 'md',\n})\n\nconst emit = defineEmits<{\n  book: []\n  click: []\n}>()\n\nconst defaultStatusLabels: Record<ResourceStatus, string> = {\n  'available': 'Available',\n  'in-use': 'In Use',\n  'maintenance': 'Maintenance',\n  'offline': 'Offline',\n}\n\nconst displayStatusLabel = computed(() => props.statusLabel ?? defaultStatusLabels[props.status])\n\nconst cardClasses = computed(() => [\n  'mint-resource-card',\n  `mint-resource-card--${props.size}`,\n  { 'mint-resource-card--compact': props.compact },\n])\n\nfunction handleBook(event: MouseEvent) {\n  event.stopPropagation()\n  emit('book')\n}\n\nfunction handleClick() {\n  emit('click')\n}\n</script>\n\n<template>\n  <!-- Compact mode -->\n  <div v-if=\"compact\" :class=\"cardClasses\" @click=\"handleClick\">\n    <slot name=\"status\">\n      <span :class=\"['mint-resource-card__status-dot', `mint-resource-card__status-dot--${status}`]\" />\n    </slot>\n\n    <span class=\"mint-resource-card__name\">{{ name }}</span>\n\n    <span :class=\"['mint-resource-card__status-label', `mint-resource-card__status-label--${status}`]\">\n      {{ displayStatusLabel }}\n    </span>\n\n    <slot name=\"action\">\n      <button\n        v-if=\"showBookAction\"\n        type=\"button\"\n        class=\"mint-resource-card__book-btn\"\n        @click=\"handleBook\"\n      >\n        Book\n      </button>\n    </slot>\n  </div>\n\n  <!-- Card mode -->\n  <div v-else :class=\"cardClasses\" @click=\"handleClick\">\n    <div class=\"mint-resource-card__content\">\n      <div class=\"mint-resource-card__header\">\n        <!-- Image / fallback -->\n        <div class=\"mint-resource-card__image\">\n          <slot name=\"image\">\n            <img v-if=\"image\" :src=\"image\" :alt=\"name\" />\n            <div v-else class=\"mint-resource-card__image-fallback\">\n              <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"1.5\" d=\"M9.75 3.104v5.714a2.25 2.25 0 01-.659 1.591L5 14.5M9.75 3.104c-.251.023-.501.05-.75.082m.75-.082a24.301 24.301 0 014.5 0m0 0v5.714a2.25 2.25 0 00.659 1.591L19 14.5M14.25 3.104c.251.023.501.05.75.082M19 14.5l-2.47 2.47a2.25 2.25 0 00-.659 1.59V21a.75.75 0 01-.75.75h-6.24a.75.75 0 01-.75-.75v-2.44a2.25 2.25 0 00-.659-1.59L5 14.5m14 0h-2.25m-10.5 0H4\" />\n              </svg>\n            </div>\n          </slot>\n        </div>\n\n        <!-- Body -->\n        <div class=\"mint-resource-card__body\">\n          <div class=\"mint-resource-card__title-row\">\n            <h3 class=\"mint-resource-card__name\">{{ name }}</h3>\n\n            <slot name=\"status\">\n              <div class=\"mint-resource-card__status\">\n                <span :class=\"['mint-resource-card__status-dot', `mint-resource-card__status-dot--${status}`]\" />\n                <span class=\"mint-resource-card__status-label\">{{ displayStatusLabel }}</span>\n              </div>\n            </slot>\n          </div>\n\n          <p v-if=\"description\" class=\"mint-resource-card__description\">{{ description }}</p>\n\n          <p v-if=\"location\" class=\"mint-resource-card__location\">Location: {{ location }}</p>\n\n          <p v-if=\"nextAvailable\" class=\"mint-resource-card__next-available\">Next available: {{ nextAvailable }}</p>\n        </div>\n      </div>\n\n      <!-- Specs -->\n      <div v-if=\"specs.length > 0 || $slots.specs\" class=\"mint-resource-card__specs\">\n        <slot name=\"specs\">\n          <div v-for=\"spec in specs\" :key=\"spec.label\" class=\"mint-resource-card__spec\">\n            <span class=\"mint-resource-card__spec-label\">{{ spec.label }}</span>\n            <span class=\"mint-resource-card__spec-value\">{{ spec.value }}</span>\n          </div>\n        </slot>\n      </div>\n\n      <!-- Tags + action -->\n      <div v-if=\"tags.length > 0 || showBookAction || $slots.action\" class=\"mint-resource-card__footer\">\n        <div class=\"mint-resource-card__tags\">\n          <BasePill v-for=\"tag in tags\" :key=\"tag\" size=\"sm\">{{ tag }}</BasePill>\n        </div>\n\n        <div class=\"mint-resource-card__action\">\n          <slot name=\"action\">\n            <button\n              v-if=\"showBookAction\"\n              type=\"button\"\n              class=\"mint-resource-card__book-btn\"\n              @click=\"handleBook\"\n            >\n              Book Now\n              <svg width=\"12\" height=\"12\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n              </svg>\n            </button>\n          </slot>\n        </div>\n      </div>\n    </div>\n  </div>\n</template>\n","<script setup lang=\"ts\">\n/** Card displaying a lab resource with availability status, specs, tags, and a book action. */\nimport { computed } from 'vue'\nimport BasePill from './BasePill.vue'\nimport type { ResourceStatus, ResourceSpec } from '../types/components'\n\ninterface Props {\n  name: string\n  description?: string\n  status?: ResourceStatus\n  image?: string\n  location?: string\n  specs?: ResourceSpec[]\n  tags?: string[]\n  nextAvailable?: string\n  showBookAction?: boolean\n  compact?: boolean\n  size?: 'sm' | 'md' | 'lg'\n  statusLabel?: string\n}\n\nconst props = withDefaults(defineProps<Props>(), {\n  status: 'available',\n  specs: () => [],\n  tags: () => [],\n  showBookAction: true,\n  compact: false,\n  size: 'md',\n})\n\nconst emit = defineEmits<{\n  book: []\n  click: []\n}>()\n\nconst defaultStatusLabels: Record<ResourceStatus, string> = {\n  'available': 'Available',\n  'in-use': 'In Use',\n  'maintenance': 'Maintenance',\n  'offline': 'Offline',\n}\n\nconst displayStatusLabel = computed(() => props.statusLabel ?? defaultStatusLabels[props.status])\n\nconst cardClasses = computed(() => [\n  'mint-resource-card',\n  `mint-resource-card--${props.size}`,\n  { 'mint-resource-card--compact': props.compact },\n])\n\nfunction handleBook(event: MouseEvent) {\n  event.stopPropagation()\n  emit('book')\n}\n\nfunction handleClick() {\n  emit('click')\n}\n</script>\n\n<template>\n  <!-- Compact mode -->\n  <div v-if=\"compact\" :class=\"cardClasses\" @click=\"handleClick\">\n    <slot name=\"status\">\n      <span :class=\"['mint-resource-card__status-dot', `mint-resource-card__status-dot--${status}`]\" />\n    </slot>\n\n    <span class=\"mint-resource-card__name\">{{ name }}</span>\n\n    <span :class=\"['mint-resource-card__status-label', `mint-resource-card__status-label--${status}`]\">\n      {{ displayStatusLabel }}\n    </span>\n\n    <slot name=\"action\">\n      <button\n        v-if=\"showBookAction\"\n        type=\"button\"\n        class=\"mint-resource-card__book-btn\"\n        @click=\"handleBook\"\n      >\n        Book\n      </button>\n    </slot>\n  </div>\n\n  <!-- Card mode -->\n  <div v-else :class=\"cardClasses\" @click=\"handleClick\">\n    <div class=\"mint-resource-card__content\">\n      <div class=\"mint-resource-card__header\">\n        <!-- Image / fallback -->\n        <div class=\"mint-resource-card__image\">\n          <slot name=\"image\">\n            <img v-if=\"image\" :src=\"image\" :alt=\"name\" />\n            <div v-else class=\"mint-resource-card__image-fallback\">\n              <svg fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"1.5\" d=\"M9.75 3.104v5.714a2.25 2.25 0 01-.659 1.591L5 14.5M9.75 3.104c-.251.023-.501.05-.75.082m.75-.082a24.301 24.301 0 014.5 0m0 0v5.714a2.25 2.25 0 00.659 1.591L19 14.5M14.25 3.104c.251.023.501.05.75.082M19 14.5l-2.47 2.47a2.25 2.25 0 00-.659 1.59V21a.75.75 0 01-.75.75h-6.24a.75.75 0 01-.75-.75v-2.44a2.25 2.25 0 00-.659-1.59L5 14.5m14 0h-2.25m-10.5 0H4\" />\n              </svg>\n            </div>\n          </slot>\n        </div>\n\n        <!-- Body -->\n        <div class=\"mint-resource-card__body\">\n          <div class=\"mint-resource-card__title-row\">\n            <h3 class=\"mint-resource-card__name\">{{ name }}</h3>\n\n            <slot name=\"status\">\n              <div class=\"mint-resource-card__status\">\n                <span :class=\"['mint-resource-card__status-dot', `mint-resource-card__status-dot--${status}`]\" />\n                <span class=\"mint-resource-card__status-label\">{{ displayStatusLabel }}</span>\n              </div>\n            </slot>\n          </div>\n\n          <p v-if=\"description\" class=\"mint-resource-card__description\">{{ description }}</p>\n\n          <p v-if=\"location\" class=\"mint-resource-card__location\">Location: {{ location }}</p>\n\n          <p v-if=\"nextAvailable\" class=\"mint-resource-card__next-available\">Next available: {{ nextAvailable }}</p>\n        </div>\n      </div>\n\n      <!-- Specs -->\n      <div v-if=\"specs.length > 0 || $slots.specs\" class=\"mint-resource-card__specs\">\n        <slot name=\"specs\">\n          <div v-for=\"spec in specs\" :key=\"spec.label\" class=\"mint-resource-card__spec\">\n            <span class=\"mint-resource-card__spec-label\">{{ spec.label }}</span>\n            <span class=\"mint-resource-card__spec-value\">{{ spec.value }}</span>\n          </div>\n        </slot>\n      </div>\n\n      <!-- Tags + action -->\n      <div v-if=\"tags.length > 0 || showBookAction || $slots.action\" class=\"mint-resource-card__footer\">\n        <div class=\"mint-resource-card__tags\">\n          <BasePill v-for=\"tag in tags\" :key=\"tag\" size=\"sm\">{{ tag }}</BasePill>\n        </div>\n\n        <div class=\"mint-resource-card__action\">\n          <slot name=\"action\">\n            <button\n              v-if=\"showBookAction\"\n              type=\"button\"\n              class=\"mint-resource-card__book-btn\"\n              @click=\"handleBook\"\n            >\n              Book Now\n              <svg width=\"12\" height=\"12\" fill=\"none\" stroke=\"currentColor\" viewBox=\"0 0 24 24\">\n                <path stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"2\" d=\"M9 5l7 7-7 7\" />\n              </svg>\n            </button>\n          </slot>\n        </div>\n      </div>\n    </div>\n  </div>\n</template>\n","/**\n * Composable for generating dilution series used in plate-based experiments.\n * Provides geometric series generation from presets (2x, 3x, ½ log, 10x)\n * and utility functions for series manipulation.\n */\n\nexport interface LevelEntry {\n  value: number\n  replicates: number\n}\n\nexport interface DilutionPreset {\n  label: string\n  factor: number | 'half-log'\n}\n\nexport const DEFAULT_PRESETS: DilutionPreset[] = [\n  { label: '2x', factor: 2 },\n  { label: '3x', factor: 3 },\n  { label: '½ log', factor: 'half-log' },\n  { label: '10x', factor: 10 },\n]\n\nexport const DEFAULT_UNITS = ['µM', 'nM', 'mM', 'pM']\n\nfunction resolveFactor(factor: number | 'half-log'): number {\n  return factor === 'half-log' ? Math.sqrt(10) : factor\n}\n\nfunction roundToSignificant(value: number, digits: number = 4): number {\n  if (value === 0) return 0\n  const magnitude = Math.floor(Math.log10(Math.abs(value))) + 1\n  const factor = Math.pow(10, digits - magnitude)\n  return Math.round(value * factor) / factor\n}\n\nexport function generateDilutionSeries(\n  startConcentration: number,\n  count: number,\n  factor: number | 'half-log',\n  defaultReplicates: number = 1,\n): LevelEntry[] {\n  if (count < 1 || startConcentration <= 0) return []\n\n  const divisor = resolveFactor(factor)\n  const levels: LevelEntry[] = []\n\n  for (let i = 0; i < count; i++) {\n    levels.push({\n      value: roundToSignificant(startConcentration / Math.pow(divisor, i)),\n      replicates: defaultReplicates,\n    })\n  }\n\n  return levels\n}\n\nexport interface UseReagentSeriesReturn {\n  generateSeries: (\n    start: number,\n    count: number,\n    factor: number | 'half-log',\n    defaultReplicates?: number,\n  ) => LevelEntry[]\n  sortLevels: (levels: LevelEntry[], order?: 'asc' | 'desc') => LevelEntry[]\n  totalPositions: (levels: LevelEntry[]) => number\n}\n\n/** Generates and sorts geometric dilution series (2x, 3x, ½ log, 10x) for plate-based experiments. */\nexport function useReagentSeries(): UseReagentSeriesReturn {\n  function generateSeries(\n    start: number,\n    count: number,\n    factor: number | 'half-log',\n    defaultReplicates: number = 1,\n  ): LevelEntry[] {\n    return generateDilutionSeries(start, count, factor, defaultReplicates)\n  }\n\n  function sortLevels(levels: LevelEntry[], order: 'asc' | 'desc' = 'desc'): LevelEntry[] {\n    return [...levels].sort((a, b) =>\n      order === 'desc' ? b.value - a.value : a.value - b.value,\n    )\n  }\n\n  function totalPositions(levels: LevelEntry[]): number {\n    return levels.reduce((sum, l) => sum + l.replicates, 0)\n  }\n\n  return { generateSeries, sortLevels, totalPositions }\n}\n","// Lab, plate, chemistry, scheduling and scientific display components (`@morscherlab/mint-sdk/lab`).\n\n// Biological experiment components\nexport { default as WellPlate } from './components/WellPlate.vue'\nexport { default as PlateEditor } from './components/PlateEditor.vue'\nexport { defineWellPlate, definePlateEditor } from './composables/componentSpecs'\n\n// Sample management components\n/** Interactive sample list with drag-and-drop group assignment, color labeling, and smart-group support. */\nexport { default as SampleSelector } from './components/SampleSelector.vue'\n\n// Lab/Experiment components\nexport { default as MoleculeInput } from './components/MoleculeInput.vue'\nexport { default as ConcentrationInput } from './components/ConcentrationInput.vue'\nexport { default as DoseCalculator } from './components/DoseCalculator.vue'\nexport { default as SampleHierarchyTree } from './components/SampleHierarchyTree.vue'\nexport { default as ProtocolStepEditor } from './components/ProtocolStepEditor.vue'\n\n// Scientific display components\nexport { default as PlotlyChart } from './components/PlotlyChart.vue'\nexport { default as ChartContainer } from './components/ChartContainer.vue'\nexport { default as ScientificNumber } from './components/ScientificNumber.vue'\nexport { default as ChemicalFormula } from './components/ChemicalFormula.vue'\nexport { default as AdductText } from './components/AdductText.vue'\n/** Displays LC/MS or GC/MS acquisition sequence progress with ETA and remaining-time labels. */\nexport { default as SequenceProgressBar } from './components/SequenceProgressBar.vue'\n/** Status badge for instrument states: a tone dot (or dash / hollow shape for offline, never-reported and inactive) plus a label. */\nexport { default as InstrumentStateBadge } from './components/InstrumentStateBadge.vue'\n/** Live-data card for an instrument status: one tab per typed panel (key/value, table, text, JSON, bar chart). */\nexport { default as InstrumentStatusPanels } from './components/InstrumentStatusPanels.vue'\n\n// Scientific input components\nexport { default as FormulaInput } from './components/FormulaInput.vue'\nexport { default as SequenceInput } from './components/SequenceInput.vue'\n\n// Scheduling / booking components\nexport { default as TimeRangeInput } from './components/TimeRangeInput.vue'\nexport { default as ScheduleCalendar } from './components/ScheduleCalendar.vue'\nexport { default as ResourceCard } from './components/ResourceCard.vue'\n\n// Workflow components\nexport { default as StepWizard } from './components/StepWizard.vue'\n\n// Time, dose and chemical formula helpers\nexport * as time from './utils/time'\nexport * as dose from './utils/dose'\nexport * as formula from './utils/formula'\n\n// Dose control recipes\nexport {\n  defineDoseCalculatorControlProps,\n  defineDoseDesignControlModel,\n  defineWellPlateControlProps,\n  defineWellPlateDoseComponentBindings,\n  defineWellPlateDoseControlProps,\n} from './composables/controlSchemaDoseDesign'\nexport type {\n  DoseCalculatorControlPropsOptions,\n  DoseDesignControlModelOptions,\n  WellPlateControlPropsOptions,\n  WellPlateDoseControlPropsOptions,\n} from './composables/controlSchemaTypes'\n\n// Lab composables and helpers\nexport {\n  useConcentrationUnits,\n  type ConcentrationValue,\n  type ConcentrationUnit,\n  type MolarityUnit,\n  type MassVolumeUnit,\n  type PercentageUnit,\n  type UnitCategory,\n  type UseConcentrationUnitsReturn,\n} from './composables/useConcentrationUnits'\nexport {\n  useProtocolTemplates,\n  type ParameterDefinition,\n  type StepTemplate,\n  type ValidationResult,\n  type UseProtocolTemplatesReturn,\n} from './composables/useProtocolTemplates'\nexport {\n  useRackEditor,\n  type UseRackEditorOptions,\n  type UseRackEditorReturn,\n  type PlateEditorListeners,\n} from './composables/useRackEditor'\nexport {\n  useSequenceUtils,\n  type SequenceType,\n  type SequenceStats,\n  type SequenceProblems,\n} from './composables/useSequenceUtils'\nexport {\n  useScheduleDrag,\n} from './composables/useScheduleDrag'\nexport {\n  useReagentSeries,\n  generateDilutionSeries,\n  DEFAULT_PRESETS,\n  DEFAULT_UNITS,\n  type LevelEntry,\n  type DilutionPreset,\n  type UseReagentSeriesReturn,\n} from './composables/useReagentSeries'\nexport {\n  useSampleGroups,\n  type DisplaySampleSubGroup,\n  type SampleGroupNode,\n  type SampleGroupSource,\n  type SampleMajorGroup,\n  type UseSampleGroupsOptions,\n  type UseSampleGroupsReturn,\n} from './composables/useSampleGroups'\nexport {\n  hexToHsl,\n  hslToHex,\n  deriveShade,\n  type Hsl,\n} from './utils/color'\nexport {\n  sampleTypeMarker,\n  type SampleMarkerType,\n  type SampleTypeMarker,\n} from './utils/sampleTypeMarker'\nexport {\n  mintPlotlyTemplate,\n} from 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