@morscherlab/mint-sdk 1.3.9 → 1.4.0-beta.2

package/dist/templates/controlSchemaConstants.d.ts

@@ -1,10 +0,0 @@
-export declare const ICONS: {
-    plate: string[];
-    samples: string[];
-    dose: string[];
-    table: string[];
-    run: string[];
-    settings: string[];
-};
-export declare const PLATE_FORMAT_OPTIONS: readonly [6, 12, 24, 48, 96, 384];
-export declare const CONCENTRATION_UNITS: readonly ["nM", "uM", "mM", "ug/mL", "mg/mL"];

package/dist/templates/controlSchemaMerge.d.ts

@@ -1,3 +0,0 @@
-import { BioTemplateControlSchema } from './controlSchemaTypes';
-import { TemplateId } from './types';
-export declare function mergeTemplateControlSchemas(templateIds: TemplateId[], templateSchemas: Record<TemplateId, BioTemplateControlSchema>): BioTemplateControlSchema;

package/dist/templates/controlSchemaTargets.d.ts

@@ -1,17 +0,0 @@
-import { TemplateId, TemplatePresetId } from './types';
-import { BioTemplateControlTarget } from './controlSchemaTypes';
-export type ControlSchemaResolvedTarget = {
-    kind: 'template';
-    name: TemplateId;
-} | {
-    kind: 'pack';
-    templates: TemplateId[];
-} | {
-    kind: 'preset';
-    name: TemplatePresetId;
-} | {
-    kind: 'collection';
-    templates: TemplateId[];
-};
-export declare function resolveControlSchemaTarget(target: BioTemplateControlTarget): ControlSchemaResolvedTarget | undefined;
-export declare function describeControlTarget(target: BioTemplateControlTarget): string;

package/dist/templates/controlSchemaTypes.d.ts

@@ -1,4 +0,0 @@
-import { ControlDefinition } from '../composables/controlSchemaTypes';
-import { BioTemplateEnvelope, TemplateCollectionEnvelope, TemplateId, TemplatePackId, TemplatePresetId } from './types';
-export type BioTemplateControlSchema = Record<string, ControlDefinition>;
-export type BioTemplateControlTarget = TemplateId | TemplatePackId | TemplatePresetId | string | BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope;

package/dist/templates/controlSchemas.d.ts

@@ -1,34 +0,0 @@
-import { ControlSchemaOptions, UseControlSchemaReturn } from '../composables/useControlSchema';
-import { TemplateId, TemplatePresetId } from './types';
-import { BioTemplateControlSchema, BioTemplateControlTarget } from './controlSchemaTypes';
-export type { BioTemplateControlSchema, BioTemplateControlTarget, } from './controlSchemaTypes';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function listBioTemplateControlSchemas(): Record<TemplateId, BioTemplateControlSchema>;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function listBioTemplatePresetControlSchemas(): Record<TemplatePresetId, BioTemplateControlSchema>;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function getBioTemplateControlSchema(target: BioTemplateControlTarget): BioTemplateControlSchema | undefined;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function requireBioTemplateControlSchema(target: BioTemplateControlTarget): BioTemplateControlSchema;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createBioTemplateControlToolkit(target: BioTemplateControlTarget, options?: ControlSchemaOptions): UseControlSchemaReturn<BioTemplateControlSchema>;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function bioTemplateControlsToFormSchema(target: BioTemplateControlTarget, options?: ControlSchemaOptions): {
-    sections: import('..').FormSectionSchema[];
-    steps?: never;
-    submitLabel?: string;
-    cancelLabel?: string;
-    showCancel?: boolean;
-};
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function bioTemplateControlsToSidebarPanels(target: BioTemplateControlTarget, options?: ControlSchemaOptions): Record<string, import('..').SidebarToolSection[]>;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function bioTemplateControlsToSectionFormSchemas(target: BioTemplateControlTarget, options?: ControlSchemaOptions): Record<string, {
-    sections: import('..').FormSectionSchema[];
-    steps?: never;
-    submitLabel?: string;
-    cancelLabel?: string;
-    showCancel?: boolean;
-}>;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function getBioTemplateControlDefaults(target: BioTemplateControlTarget): import('..').ControlValues<BioTemplateControlSchema>;

package/dist/templates/defaultBioTemplateBuilder.d.ts

@@ -1,3 +0,0 @@
-import { BioTemplateEnvelope, TemplateId } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createDefaultBioTemplate(templateId: TemplateId | string): BioTemplateEnvelope<unknown>;

package/dist/templates/doseResponseAdapters.d.ts

@@ -1,6 +0,0 @@
-import { PlateMapEditorState } from '../types';
-import { DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toDoseConditions(template: DoseResponseTemplate | DoseResponseTemplateData): DoseConditionsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toDoseLayoutState(template: DoseResponseTemplate | DoseResponseTemplateData): PlateMapEditorState | undefined;

package/dist/templates/doseResponseBuilder.d.ts

@@ -1,3 +0,0 @@
-import { CreateDoseResponseTemplateOptions, DoseResponseTemplate } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createDoseResponseTemplate(options: CreateDoseResponseTemplateOptions): DoseResponseTemplate;

package/dist/templates/elisaAssayCollectionBuilder.d.ts

@@ -1,3 +0,0 @@
-import { CreateElisaAssayCollectionOptions, TemplateCollectionEnvelope } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createElisaAssayCollection(options?: CreateElisaAssayCollectionOptions): TemplateCollectionEnvelope;

package/dist/templates/flowCytometryAssayCollectionBuilder.d.ts

@@ -1,3 +0,0 @@
-import { CreateFlowCytometryAssayCollectionOptions, TemplateCollectionEnvelope } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createFlowCytometryAssayCollection(options?: CreateFlowCytometryAssayCollectionOptions): TemplateCollectionEnvelope;

package/dist/templates/flowCytometryPanelBuilder.d.ts

@@ -1,3 +0,0 @@
-import { CreateFlowCytometryPanelTemplateOptions, FlowCytometryPanelTemplate } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createFlowCytometryPanelTemplate(options: CreateFlowCytometryPanelTemplateOptions): FlowCytometryPanelTemplate;

package/dist/templates/flowNormalizers.d.ts

@@ -1,8 +0,0 @@
-import { FlowPanelControl, FlowPanelMarker } from './types';
-export declare function normalizeFlowMarker(marker: Partial<FlowPanelMarker> & {
-    marker: string;
-}, index: number): FlowPanelMarker;
-export declare function normalizeFlowControl(control: Partial<FlowPanelControl> & {
-    name: string;
-}, index: number): FlowPanelControl;
-export declare function defaultFlowControls(markers: FlowPanelMarker[]): FlowPanelControl[];

package/dist/templates/flowPanelAdapters.d.ts

@@ -1,7 +0,0 @@
-import { FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowPanelColumnsAdapterResult, FlowPanelDataFrameAdapterResult, FlowPanelRowsAdapterResult } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toFlowPanelRows(template: FlowCytometryPanelTemplate | FlowCytometryPanelTemplateData): FlowPanelRowsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toFlowPanelColumns(): FlowPanelColumnsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toFlowPanelDataFrame(template: FlowCytometryPanelTemplate | FlowCytometryPanelTemplateData): FlowPanelDataFrameAdapterResult;

package/dist/templates/index.d.ts

@@ -1,15 +0,0 @@
-export { assertTemplateEnvelope, bioTemplatePresetControlValuesToOptions, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createAssayMatrixTemplate, createCalibrationCurveTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createWesternBlotAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSampleSheetTemplate, createSamplePrepTemplate, createTargetedMetabolomicsCollection, createTemplateCollection, createDefaultBioTemplate, createTimeCourseTemplate, createTemplateEnvelope, createWellPlateScreenCollection, ensureTemplateFromCollection, ensureTemplateEnvelope, extractTemplateCollection, getTemplateData, TEMPLATE_COLLECTION_KEY, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSampleSheetData, validateSamplePrepData, validateTimeCourseData, } from './builders';
-export type { BioTemplateControlValues, } from './builders';
-export { bioTemplateCatalog, getBioTemplateInfo, listBioTemplateCatalog, searchBioTemplateCatalog, } from './catalog';
-export { bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, createBioTemplateControlToolkit, getBioTemplateControlDefaults, getBioTemplateControlSchema, listBioTemplateControlSchemas, listBioTemplatePresetControlSchemas, requireBioTemplateControlSchema, } from './controlSchemas';
-export { getBioTemplateComponentProps, getBioTemplateComponentBindings, listBioTemplateComponentBindings, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, } from './componentBindings';
-export type { BioTemplateComponentBindingsById, BioTemplateComponentPropsByComponent, BioTemplateComponentPropsById, BioTemplateComponentPropsLookupOptions, } from './componentBindings';
-export { bioTemplatePresets, getBioTemplatePresetInfo, listBioTemplatePresets, searchBioTemplatePresets, } from './presets';
-export { bioTemplatePacks, getBioTemplatePackInfo, listBioTemplatePacks, searchBioTemplatePacks, } from './packs';
-export { toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, racksFromPlateState, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, } from './adapters';
-export type { AssayFeature, AssayFeatureType, AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, AssayMeasurement, AssaySample, BioTemplateEnvelope, CalibrationAcceptance, CalibrationAcceptanceInput, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, CalibrationModel, CalibrationPoint, CalibrationPointInput, CalibrationPointRole, CalibrationPointStatus, CompoundDoseSeries, ControlDefinition, ControlRole, CreateBioTemplatePackCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreateLcmsBatchCollectionOptions, CreateTargetedMetabolomicsCollectionOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowControlKind, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowMarkerPurpose, FlowPanelColumnsAdapterResult, FlowPanelControl, FlowPanelDataFrameAdapterResult, FlowPanelMarker, FlowPanelRowsAdapterResult, InstrumentMethod, InstrumentMethodInput, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunItem, InstrumentRunItemInput, InstrumentRunItemKind, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, InstrumentRunStatus, InstrumentRunTemplate, InstrumentRunTemplateData, DataFrameAdapterResult, DataFrameTemplate, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepRecord, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrChemistry, QpcrColumnsAdapterResult, QpcrControlKind, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrReaction, QpcrRowsAdapterResult, QpcrSample, QpcrTarget, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentKind, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRecord, ReagentTemplateInput, ReagentRowsAdapterResult, SampleColumn, SampleColumnType, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleGroupDefinition, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepStatus, SamplePrepStep, SamplePrepStepInput, SamplePrepStepType, SamplePrepTemplate, SamplePrepTemplateData, SampleRecord, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseCondition, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseSample, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TimePoint, TimeUnit, TemplateId, TemplatePackId, TemplatePresetId, TemplateCollection, TemplateCollectionEnvelope, TemplateDataFrameAdapterResult, TemplateKind, TemplatePlateMap, TemplateSample, TemplateWell, WellMapAdapterResult, } from './types';
-export type { BioTemplateCatalogEntry, } from './catalog';
-export type { BioTemplateComponentBinding, BioTemplateComponentImport, BioTemplateComponentPropsBinding, BioTemplateResolvedComponentBinding, BioTemplateComponentSnippet, BioTemplateComponentSnippetOptions, BioTemplateComponentTarget, BioTemplateComponentUsage, BioTemplateComponentUsageOptions, } from './componentBindings';
-export type { BioTemplateControlSchema, BioTemplateControlTarget, } from './controlSchemas';
-export type { BioTemplatePresetEntry, } from './presets';
-export type { BioTemplatePackEntry, } from './packs';

package/dist/templates/index.js

@@ -1,2 +0,0 @@
-import { $ as toTimeCourseDataFrame, $t as getBioTemplatePackInfo, A as createSamplePrepTemplate, At as toCalibrationCurveDataFrame, B as toBioTemplateComponentProps, Bt as validateInstrumentRunData, C as createFlowCytometryPanelTemplate, Ct as toInstrumentRunRows, D as createTimeCourseTemplate, Dt as toFlowPanelDataFrame, E as createProtocolStepsTemplate, Et as toFlowPanelColumns, F as getBioTemplateComponentProps, Ft as toAssayMatrixSampleOptions, G as toTemplateDataFrame, Gt as validateSamplePrepData, H as toBioTemplateComponentPropsById, Ht as validateProtocolStepsData, I as listBioTemplateComponentBindings, It as validateAssayMatrixData, J as toDoseConditions, Jt as bioTemplatePresets, K as toWellMapArray, Kt as validateSampleSheetData, L as toBioTemplateComponentBindings, Lt as validateCalibrationCurveData, M as createPlateMapTemplate, Mt as toAssayMatrixColumns, N as bioTemplatePresetControlValuesToOptions, Nt as toAssayMatrixDataFrame, O as createCalibrationCurveTemplate, Ot as toFlowPanelRows, P as getBioTemplateComponentBindings, Pt as toAssayMatrixRows, Q as toTimeCourseColumns, Qt as bioTemplatePacks, R as toBioTemplateComponentBindingsById, Rt as validateDoseResponseData, S as createInstrumentRunTemplate, St as toInstrumentRunDataFrame, T as createAssayMatrixTemplate, Tt as toInstrumentRunSteps, U as toBioTemplateComponentSnippets, Ut as validateQpcrPlateData, V as toBioTemplateComponentPropsByComponent, Vt as validatePlateMapData, W as toBioTemplateComponentUsage, Wt as validateReagentListData, X as toPlateMapEditorState, Xt as listBioTemplatePresets, Y as toDoseLayoutState, Yt as getBioTemplatePresetInfo, Z as toWellPlateWells, Zt as searchBioTemplatePresets, _ as createElisaAssayCollection, _t as toProtocolColumns, a as getBioTemplateControlDefaults, an as searchBioTemplateCatalog, at as toSampleRows, b as createQpcrExpressionCollection, bt as toProtocolSteps, c as listBioTemplatePresetControlSchemas, cn as createTemplateCollection, ct as toSamplePrepRows, d as createBioTemplatePresetCollectionFromControls, dn as ensureTemplateFromCollection, dt as toReagentListItems, en as listBioTemplatePacks, et as toTimeCourseRows, f as createWellPlateScreenCollection, fn as extractTemplateCollection, ft as toReagentRows, g as createFlowCytometryAssayCollection, gt as toQpcrWellPlateWells, h as createWesternBlotAssayCollection, ht as toQpcrRows, i as createBioTemplateControlToolkit, in as listBioTemplateCatalog, it as toSampleOptions, j as createSampleSheetTemplate, jt as toCalibrationCurveRows, k as createDoseResponseTemplate, kt as toCalibrationCurveColumns, l as requireBioTemplateControlSchema, ln as createTemplateEnvelope, lt as toReagentColumns, m as createDefaultBioTemplate, mt as toQpcrDataFrame, n as bioTemplateControlsToSectionFormSchemas, nn as bioTemplateCatalog, nt as toSampleColumns, o as getBioTemplateControlSchema, on as TEMPLATE_COLLECTION_KEY, ot as toSamplePrepColumns, p as createBioTemplatePackCollection, pn as getTemplateData, pt as toQpcrColumns, q as racksFromPlateState, qt as validateTimeCourseData, r as bioTemplateControlsToSidebarPanels, rn as getBioTemplateInfo, rt as toSampleDataFrame, s as listBioTemplateControlSchemas, sn as assertTemplateEnvelope, st as toSamplePrepDataFrame, t as bioTemplateControlsToFormSchema, tn as searchBioTemplatePacks, tt as toTimeCourseSteps, u as createBioTemplatePresetCollection, un as ensureTemplateEnvelope, ut as toReagentDataFrame, v as createTargetedMetabolomicsCollection, vt as toProtocolDataFrame, w as createReagentListTemplate, wt as toInstrumentRunScheduleEvents, x as createQpcrPlateTemplate, xt as toInstrumentRunColumns, y as createLcmsBatchCollection, yt as toProtocolRows, z as toBioTemplateComponentImports, zt as validateFlowCytometryPanelData } from "../templates-B2DB0MCM.js";
-export { TEMPLATE_COLLECTION_KEY, assertTemplateEnvelope, bioTemplateCatalog, bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, bioTemplatePacks, bioTemplatePresetControlValuesToOptions, bioTemplatePresets, createAssayMatrixTemplate, createBioTemplateControlToolkit, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createCalibrationCurveTemplate, createDefaultBioTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSamplePrepTemplate, createSampleSheetTemplate, createTargetedMetabolomicsCollection, createTemplateCollection, createTemplateEnvelope, createTimeCourseTemplate, createWellPlateScreenCollection, createWesternBlotAssayCollection, ensureTemplateEnvelope, ensureTemplateFromCollection, extractTemplateCollection, getBioTemplateComponentBindings, getBioTemplateComponentProps, getBioTemplateControlDefaults, getBioTemplateControlSchema, getBioTemplateInfo, getBioTemplatePackInfo, getBioTemplatePresetInfo, getTemplateData, listBioTemplateCatalog, listBioTemplateComponentBindings, listBioTemplateControlSchemas, listBioTemplatePacks, listBioTemplatePresetControlSchemas, listBioTemplatePresets, racksFromPlateState, requireBioTemplateControlSchema, searchBioTemplateCatalog, searchBioTemplatePacks, searchBioTemplatePresets, toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData };

package/dist/templates/instrumentRunAdapterHelpers.d.ts

@@ -1,8 +0,0 @@
-import { ProtocolStepStatus, ProtocolStepType, ScheduleEventStatus } from '../types';
-import { InstrumentRunItem, InstrumentRunItemKind, InstrumentRunStatus } from './types';
-export declare function instrumentRunStepType(kind: InstrumentRunItemKind): ProtocolStepType;
-export declare function instrumentRunStepStatus(status: InstrumentRunStatus): ProtocolStepStatus;
-export declare function instrumentRunScheduleStatus(status: InstrumentRunStatus): ScheduleEventStatus;
-export declare function instrumentRunScheduleColor(kind: InstrumentRunItem['kind']): string;
-export declare function dateFromMetadata(metadata: Record<string, unknown> | undefined, keys: readonly string[]): Date | undefined;
-export declare function addMinutes(date: Date, minutes: number): Date;

package/dist/templates/instrumentRunAdapters.d.ts

@@ -1,19 +0,0 @@
-import { InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, InstrumentRunTemplate, InstrumentRunTemplateData } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toInstrumentRunRows(template: InstrumentRunTemplate | InstrumentRunTemplateData): InstrumentRunRowsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toInstrumentRunColumns(): InstrumentRunColumnsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toInstrumentRunDataFrame(template: InstrumentRunTemplate | InstrumentRunTemplateData): InstrumentRunDataFrameAdapterResult;
-/**
- * Convert an instrument-run template into ExperimentTimeline protocol steps for acquisition queue previews.
- *
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function toInstrumentRunSteps(template: InstrumentRunTemplate | InstrumentRunTemplateData): InstrumentRunStepsAdapterResult;
-/**
- * Convert an instrument-run template into readonly ScheduleCalendar events ordered by run queue timing.
- *
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function toInstrumentRunScheduleEvents(template: InstrumentRunTemplate | InstrumentRunTemplateData): InstrumentRunScheduleEventsAdapterResult;

package/dist/templates/instrumentRunBuilder.d.ts

@@ -1,3 +0,0 @@
-import { CreateInstrumentRunTemplateOptions, InstrumentRunTemplate } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createInstrumentRunTemplate(options: CreateInstrumentRunTemplateOptions): InstrumentRunTemplate;

package/dist/templates/lcmsBatchCollectionBuilder.d.ts

@@ -1,3 +0,0 @@
-import { CreateLcmsBatchCollectionOptions, TemplateCollectionEnvelope } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createLcmsBatchCollection(options?: CreateLcmsBatchCollectionOptions): TemplateCollectionEnvelope;

package/dist/templates/lookup.d.ts

@@ -1,4 +0,0 @@
-/** Normalize human-facing template lookup terms so spaces, hyphens, and underscores behave the same. */
-export declare function normalizeTemplateLookupKey(value: string): string;
-export declare function templateIdentifierMatches(query: string, identifiers: readonly string[]): boolean;
-export declare function templateSearchMatches(query: string, values: readonly string[]): boolean;

package/dist/templates/packs.d.ts

@@ -1,21 +0,0 @@
-import { TemplateId, TemplatePackId } from './types';
-export interface BioTemplatePackEntry {
-    name: TemplatePackId;
-    label: string;
-    category: 'bio-template-pack';
-    purpose: string;
-    templates: readonly TemplateId[];
-    aliases: readonly string[];
-    frontend_adapters: readonly string[];
-    components: readonly string[];
-    add_command: string;
-    docs_command: string;
-}
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare const bioTemplatePacks: readonly BioTemplatePackEntry[];
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function listBioTemplatePacks(): readonly BioTemplatePackEntry[];
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function getBioTemplatePackInfo(name: string): BioTemplatePackEntry | undefined;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function searchBioTemplatePacks(query: string): readonly BioTemplatePackEntry[];

package/dist/templates/plateMapAdapters.d.ts

@@ -1,5 +0,0 @@
-import { PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, WellMapAdapterResult } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toPlateMapEditorState(template: PlateMapTemplate | PlateMapTemplateData): PlateMapEditorAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toWellPlateWells(template: PlateMapTemplate | PlateMapTemplateData, plateId?: string): WellMapAdapterResult;

package/dist/templates/plateMapBuilder.d.ts

@@ -1,3 +0,0 @@
-import { CreatePlateMapTemplateOptions, PlateMapTemplate } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createPlateMapTemplate(options?: CreatePlateMapTemplateOptions): PlateMapTemplate;