@morscherlab/mint-sdk 1.3.9 → 1.4.0-beta.1

package/dist/tailwind.preset.js

@@ -1,71 +0,0 @@
-//#region src/tailwind.preset.ts
-var mintPreset = { theme: { extend: {
-	colors: {
-		mint: {
-			primary: "var(--color-primary)",
-			"primary-hover": "var(--color-primary-hover)",
-			"primary-light": "var(--color-primary-light)",
-			cta: "var(--color-cta)",
-			"cta-hover": "var(--color-cta-hover)",
-			danger: "var(--mint-error)",
-			"danger-hover": "var(--mint-error-hover)",
-			success: "var(--mint-success)",
-			"success-hover": "var(--mint-success-hover)",
-			warning: "var(--mint-warning)",
-			"warning-hover": "var(--mint-warning-hover)",
-			brand: "var(--mint-brand)",
-			"brand-hover": "var(--mint-brand-hover)",
-			experiment: "var(--color-experiment)",
-			"experiment-hover": "var(--color-experiment-hover)",
-			project: "var(--color-project)",
-			"project-hover": "var(--color-project-hover)"
-		},
-		bg: {
-			primary: "var(--mint-bg-primary)",
-			secondary: "var(--mint-bg-secondary)",
-			card: "var(--mint-bg-card)",
-			hover: "var(--mint-bg-hover)",
-			input: "var(--mint-bg-input)"
-		},
-		text: {
-			primary: "var(--mint-text-primary)",
-			secondary: "var(--mint-text-secondary)",
-			muted: "var(--mint-text-muted)",
-			inverse: "var(--mint-text-inverse)"
-		},
-		border: {
-			DEFAULT: "var(--mint-border)",
-			focus: "var(--mint-border-focus)"
-		}
-	},
-	fontFamily: {
-		sans: [
-			"Fira Sans",
-			"system-ui",
-			"-apple-system",
-			"sans-serif"
-		],
-		mono: [
-			"Fira Code",
-			"ui-monospace",
-			"SFMono-Regular",
-			"monospace"
-		]
-	},
-	borderRadius: {
-		mint: "0.5rem",
-		"mint-sm": "0.375rem",
-		"mint-lg": "0.75rem"
-	},
-	boxShadow: {
-		mint: "0 1px 3px 0 rgb(0 0 0 / 0.1), 0 1px 2px -1px rgb(0 0 0 / 0.1)",
-		"mint-md": "0 4px 6px -1px rgb(0 0 0 / 0.1), 0 2px 4px -2px rgb(0 0 0 / 0.1)",
-		"mint-lg": "0 10px 15px -3px rgb(0 0 0 / 0.1), 0 4px 6px -4px rgb(0 0 0 / 0.1)",
-		"mint-card": "var(--card-shadow)"
-	},
-	transitionDuration: { mint: "150ms" }
-} } };
-//#endregion
-export { mintPreset as default };
-
-//# sourceMappingURL=tailwind.preset.js.map

package/dist/tailwind.preset.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"tailwind.preset.js","names":[],"sources":["../src/tailwind.preset.ts"],"sourcesContent":["import type { Config } from 'tailwindcss'\n\nconst mintPreset = {\n  theme: {\n    extend: {\n      colors: {\n        mint: {\n          primary: 'var(--color-primary)',\n          'primary-hover': 'var(--color-primary-hover)',\n          'primary-light': 'var(--color-primary-light)',\n          cta: 'var(--color-cta)',\n          'cta-hover': 'var(--color-cta-hover)',\n          danger: 'var(--mint-error)',\n          'danger-hover': 'var(--mint-error-hover)',\n          success: 'var(--mint-success)',\n          'success-hover': 'var(--mint-success-hover)',\n          warning: 'var(--mint-warning)',\n          'warning-hover': 'var(--mint-warning-hover)',\n          brand: 'var(--mint-brand)',\n          'brand-hover': 'var(--mint-brand-hover)',\n          experiment: 'var(--color-experiment)',\n          'experiment-hover': 'var(--color-experiment-hover)',\n          project: 'var(--color-project)',\n          'project-hover': 'var(--color-project-hover)',\n        },\n        bg: {\n          primary: 'var(--mint-bg-primary)',\n          secondary: 'var(--mint-bg-secondary)',\n          card: 'var(--mint-bg-card)',\n          hover: 'var(--mint-bg-hover)',\n          input: 'var(--mint-bg-input)',\n        },\n        text: {\n          primary: 'var(--mint-text-primary)',\n          secondary: 'var(--mint-text-secondary)',\n          muted: 'var(--mint-text-muted)',\n          inverse: 'var(--mint-text-inverse)',\n        },\n        border: {\n          DEFAULT: 'var(--mint-border)',\n          focus: 'var(--mint-border-focus)',\n        },\n      },\n      fontFamily: {\n        sans: ['Fira Sans', 'system-ui', '-apple-system', 'sans-serif'],\n        mono: ['Fira Code', 'ui-monospace', 'SFMono-Regular', 'monospace'],\n      },\n      borderRadius: {\n        mint: '0.5rem',\n        'mint-sm': '0.375rem',\n        'mint-lg': '0.75rem',\n      },\n      boxShadow: {\n        mint: '0 1px 3px 0 rgb(0 0 0 / 0.1), 0 1px 2px -1px rgb(0 0 0 / 0.1)',\n        'mint-md': '0 4px 6px -1px rgb(0 0 0 / 0.1), 0 2px 4px -2px rgb(0 0 0 / 0.1)',\n        'mint-lg': '0 10px 15px -3px rgb(0 0 0 / 0.1), 0 4px 6px -4px rgb(0 0 0 / 0.1)',\n        'mint-card': 'var(--card-shadow)',\n      },\n      transitionDuration: {\n        mint: '150ms',\n      },\n    },\n  },\n} satisfies Partial<Config>\n\nexport default mintPreset\n"],"mappings":";AAEA,IAAM,aAAa,EACjB,OAAO,EACL,QAAQ;CACN,QAAQ;EACN,MAAM;GACJ,SAAS;GACT,iBAAiB;GACjB,iBAAiB;GACjB,KAAK;GACL,aAAa;GACb,QAAQ;GACR,gBAAgB;GAChB,SAAS;GACT,iBAAiB;GACjB,SAAS;GACT,iBAAiB;GACjB,OAAO;GACP,eAAe;GACf,YAAY;GACZ,oBAAoB;GACpB,SAAS;GACT,iBAAiB;EACnB;EACA,IAAI;GACF,SAAS;GACT,WAAW;GACX,MAAM;GACN,OAAO;GACP,OAAO;EACT;EACA,MAAM;GACJ,SAAS;GACT,WAAW;GACX,OAAO;GACP,SAAS;EACX;EACA,QAAQ;GACN,SAAS;GACT,OAAO;EACT;CACF;CACA,YAAY;EACV,MAAM;GAAC;GAAa;GAAa;GAAiB;EAAY;EAC9D,MAAM;GAAC;GAAa;GAAgB;GAAkB;EAAW;CACnE;CACA,cAAc;EACZ,MAAM;EACN,WAAW;EACX,WAAW;CACb;CACA,WAAW;EACT,MAAM;EACN,WAAW;EACX,WAAW;EACX,aAAa;CACf;CACA,oBAAoB,EAClB,MAAM,QACR;AACF,EACF,EACF"}

package/dist/templates/adapters.d.ts

@@ -1,19 +0,0 @@
-import { Well } from '../types';
-import { BioTemplateEnvelope, DataFrameTemplate, TemplateDataFrameAdapterResult } from './types';
-export { toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, } from './assayMatrixAdapters';
-export { toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, } from './calibrationCurveAdapters';
-export { toDoseConditions, toDoseLayoutState, } from './doseResponseAdapters';
-export { toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, } from './flowPanelAdapters';
-export { toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, } from './instrumentRunAdapters';
-export { toPlateMapEditorState, toWellPlateWells, } from './plateMapAdapters';
-export { racksFromPlateState } from './componentPlateHelpers';
-export { toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, } from './protocolAdapters';
-export { toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, } from './qpcrAdapters';
-export { toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, } from './reagentAdapters';
-export { toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, } from './samplePrepAdapters';
-export { toSampleColumns, toSampleDataFrame, toSampleOptions, toSampleRows, } from './sampleSheetAdapters';
-export { toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, } from './timeCourseAdapters';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toTemplateDataFrame(template: DataFrameTemplate | BioTemplateEnvelope<unknown>): TemplateDataFrameAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toWellMapArray(wells: Record<string, Well>): Well[];

package/dist/templates/assayLookups.d.ts

@@ -1,3 +0,0 @@
-import { AssayFeature, AssaySample } from './types';
-export declare function createAssaySampleLookup(samples: AssaySample[]): Map<string, string>;
-export declare function createAssayFeatureLookup(features: AssayFeature[]): Map<string, string>;

package/dist/templates/assayMatrixAdapters.d.ts

@@ -1,13 +0,0 @@
-import { AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toAssayMatrixRows(template: AssayMatrixTemplate | AssayMatrixTemplateData): AssayMatrixRowsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toAssayMatrixColumns(template: AssayMatrixTemplate | AssayMatrixTemplateData): AssayMatrixColumnsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toAssayMatrixDataFrame(template: AssayMatrixTemplate | AssayMatrixTemplateData): AssayMatrixDataFrameAdapterResult;
-/**
- * Convert an assay-matrix template into SampleSelector options derived from assay samples.
- *
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function toAssayMatrixSampleOptions(template: AssayMatrixTemplate | AssayMatrixTemplateData): AssayMatrixSampleOptionsAdapterResult;

package/dist/templates/assayMatrixBuilder.d.ts

@@ -1,3 +0,0 @@
-import { AssayMatrixTemplate, CreateAssayMatrixTemplateOptions } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createAssayMatrixTemplate(options: CreateAssayMatrixTemplateOptions): AssayMatrixTemplate;

package/dist/templates/assayNormalizers.d.ts

@@ -1,4 +0,0 @@
-import { AssayFeature, AssaySample, ReagentRecord, ReagentTemplateInput } from './types';
-export declare function normalizeAssaySample(sample: AssaySample): AssaySample;
-export declare function normalizeAssayFeature(feature: AssayFeature): AssayFeature;
-export declare function normalizeReagent(reagent: ReagentTemplateInput): ReagentRecord;

package/dist/templates/builderIdUtils.d.ts

@@ -1,4 +0,0 @@
-export declare function sampleIdFromName(name: string, index: number): string;
-export declare function compoundIdFromName(name: string, index: number): string;
-export declare function idFromName(name: string, fallback: string): string;
-export declare function timepointId(value: number, unit: string, index: number): string;

package/dist/templates/builderPresetControls.d.ts

@@ -1,11 +0,0 @@
-import { CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateLcmsBatchCollectionOptions, CreateQpcrExpressionCollectionOptions, CreateTargetedMetabolomicsCollectionOptions, CreateWellPlateScreenCollectionOptions, CreateWesternBlotAssayCollectionOptions, TemplatePresetId } from './types';
-export type BioTemplateControlValues = Record<string, unknown>;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function bioTemplatePresetControlValuesToOptions(name: 'wellplate-screen', values: BioTemplateControlValues): CreateWellPlateScreenCollectionOptions;
-export declare function bioTemplatePresetControlValuesToOptions(name: 'qpcr-expression', values: BioTemplateControlValues): CreateQpcrExpressionCollectionOptions;
-export declare function bioTemplatePresetControlValuesToOptions(name: 'lcms-batch', values: BioTemplateControlValues): CreateLcmsBatchCollectionOptions;
-export declare function bioTemplatePresetControlValuesToOptions(name: 'targeted-metabolomics', values: BioTemplateControlValues): CreateTargetedMetabolomicsCollectionOptions;
-export declare function bioTemplatePresetControlValuesToOptions(name: 'elisa-assay', values: BioTemplateControlValues): CreateElisaAssayCollectionOptions;
-export declare function bioTemplatePresetControlValuesToOptions(name: 'flow-cytometry-assay', values: BioTemplateControlValues): CreateFlowCytometryAssayCollectionOptions;
-export declare function bioTemplatePresetControlValuesToOptions(name: 'western-blot-assay', values: BioTemplateControlValues): CreateWesternBlotAssayCollectionOptions;
-export declare function bioTemplatePresetControlValuesToOptions(name: TemplatePresetId | string, values: BioTemplateControlValues): CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateTargetedMetabolomicsCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions;

package/dist/templates/builderReadUtils.d.ts

@@ -1,8 +0,0 @@
-export { isRecord } from '../utils/records';
-export declare function readStringList(value: unknown, fallback: string[]): string[];
-export declare function readNumberList(value: unknown, fallback: number[]): number[];
-export declare function readString(value: unknown, fallback: string): string;
-export declare function readOptionalString(value: unknown): string | undefined;
-export declare function readInteger(value: unknown, fallback: number): number;
-export declare function readNumber(value: unknown, fallback: number): number;
-export declare function readBoolean(value: unknown, fallback: boolean): boolean;

package/dist/templates/builders.d.ts

@@ -1,26 +0,0 @@
-export { bioTemplatePresetControlValuesToOptions, } from './builderPresetControls';
-export type { BioTemplateControlValues, } from './builderPresetControls';
-export { createPlateMapTemplate, } from './plateMapBuilder';
-export { createSampleSheetTemplate, } from './sampleSheetBuilder';
-export { createSamplePrepTemplate, } from './samplePrepBuilder';
-export { createDoseResponseTemplate, } from './doseResponseBuilder';
-export { createCalibrationCurveTemplate, } from './calibrationCurveBuilder';
-export { createTimeCourseTemplate, } from './timeCourseBuilder';
-export { createProtocolStepsTemplate, } from './protocolStepsBuilder';
-export { createAssayMatrixTemplate, } from './assayMatrixBuilder';
-export { createReagentListTemplate, } from './reagentListBuilder';
-export { createFlowCytometryPanelTemplate, } from './flowCytometryPanelBuilder';
-export { createInstrumentRunTemplate, } from './instrumentRunBuilder';
-export { createQpcrPlateTemplate, } from './qpcrPlateBuilder';
-export { createQpcrExpressionCollection, } from './qpcrExpressionCollectionBuilder';
-export { createLcmsBatchCollection, } from './lcmsBatchCollectionBuilder';
-export { createTargetedMetabolomicsCollection, } from './targetedMetabolomicsCollectionBuilder';
-export { createElisaAssayCollection, } from './elisaAssayCollectionBuilder';
-export { createFlowCytometryAssayCollection, } from './flowCytometryAssayCollectionBuilder';
-export { createWesternBlotAssayCollection, } from './westernBlotAssayCollectionBuilder';
-export { createDefaultBioTemplate, } from './defaultBioTemplateBuilder';
-export { createBioTemplatePackCollection, } from './templatePackCollectionBuilder';
-export { createWellPlateScreenCollection, } from './wellPlateScreenCollectionBuilder';
-export { createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, } from './templatePresetCollectionBuilder';
-export { assertTemplateEnvelope, createTemplateCollection, createTemplateEnvelope, ensureTemplateEnvelope, ensureTemplateFromCollection, extractTemplateCollection, getTemplateData, TEMPLATE_COLLECTION_KEY, } from './templateEnvelopes';
-export { validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData, } from './templateValidators';

package/dist/templates/calibrationCurveAdapters.d.ts

@@ -1,7 +0,0 @@
-import { CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toCalibrationCurveRows(template: CalibrationCurveTemplate | CalibrationCurveTemplateData): CalibrationCurveRowsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toCalibrationCurveColumns(): CalibrationCurveColumnsAdapterResult;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toCalibrationCurveDataFrame(template: CalibrationCurveTemplate | CalibrationCurveTemplateData): CalibrationCurveDataFrameAdapterResult;

package/dist/templates/calibrationCurveBuilder.d.ts

@@ -1,3 +0,0 @@
-import { CalibrationCurveTemplate, CreateCalibrationCurveTemplateOptions } from './types';
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function createCalibrationCurveTemplate(options: CreateCalibrationCurveTemplateOptions): CalibrationCurveTemplate;

package/dist/templates/calibrationNormalizers.d.ts

@@ -1,5 +0,0 @@
-import { CalibrationAcceptance, CalibrationPoint, CalibrationPointInput, CompoundDoseSeries, ControlDefinition } from './types';
-export declare function normalizeCompound(compound: CompoundDoseSeries): CompoundDoseSeries;
-export declare function normalizeCalibrationAcceptance(acceptance?: Partial<CalibrationAcceptance>, requireBlank?: boolean): CalibrationAcceptance;
-export declare function normalizeCalibrationPoint(point: CalibrationPointInput, unit: string, order: number, index: number): CalibrationPoint;
-export declare function normalizeControl(control: ControlDefinition): ControlDefinition;

package/dist/templates/catalog.d.ts

@@ -1,192 +0,0 @@
-import { TemplateId } from './types';
-export interface BioTemplateCatalogEntry {
-    name: TemplateId;
-    template_id: TemplateId;
-    template_version: string;
-    label: string;
-    category: 'bio-data';
-    purpose: string;
-    aliases: readonly string[];
-    python_import: string;
-    python_example: string;
-    frontend_import: string;
-    frontend_adapters: readonly string[];
-    components: readonly string[];
-    add_command: string;
-}
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare const bioTemplateCatalog: readonly [{
-    readonly name: "plate-map";
-    readonly template_id: "plate-map";
-    readonly template_version: "1.0";
-    readonly label: "Plate map";
-    readonly category: "bio-data";
-    readonly purpose: "Plate layout, wells, sample assignments, and sample legend data.";
-    readonly aliases: readonly ["wellplate", "well-plate", "plate layout", "plate-map editor"];
-    readonly python_import: "from mint_sdk.templates import PlateMapTemplate, save_template";
-    readonly python_example: "PlateMapTemplate.create_96_well(name=\"Plate 1\", samples=[\"Control\", \"Treatment\"])";
-    readonly frontend_import: "import { toPlateMapEditorState, toWellPlateWells } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toPlateMapEditorState", "toWellPlateWells"];
-    readonly components: readonly ["PlateEditor", "WellPlate", "SampleLegend"];
-    readonly add_command: "mint add data-template plate-map --page";
-}, {
-    readonly name: "sample-sheet";
-    readonly template_id: "sample-sheet";
-    readonly template_version: "1.0";
-    readonly label: "Sample sheet";
-    readonly category: "bio-data";
-    readonly purpose: "Tabular sample metadata, display columns, and group definitions.";
-    readonly aliases: readonly ["sample metadata", "sample table", "metadata sheet", "csv samples"];
-    readonly python_import: "from mint_sdk.templates import SampleSheetTemplate, save_template";
-    readonly python_example: "SampleSheetTemplate.from_rows([{\"sample_id\": \"S001\", \"name\": \"Control 1\", \"group\": \"Control\"}])";
-    readonly frontend_import: "import { toTemplateDataFrame, toSampleOptions } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toSampleDataFrame", "toSampleRows", "toSampleColumns", "toSampleOptions"];
-    readonly components: readonly ["DataFrame", "SampleSelector", "GroupAssigner"];
-    readonly add_command: "mint add data-template sample-sheet --page";
-}, {
-    readonly name: "sample-prep";
-    readonly template_id: "sample-prep";
-    readonly template_version: "1.0";
-    readonly label: "Sample prep";
-    readonly category: "bio-data";
-    readonly purpose: "Extraction, dilution, normalization, transfer, source/destination, volume, reagent, and status steps.";
-    readonly aliases: readonly ["sample preparation", "extraction", "dilution", "normalization", "prep steps"];
-    readonly python_import: "from mint_sdk.templates import SamplePrepTemplate, save_template";
-    readonly python_example: "SamplePrepTemplate.create([\"S001\", \"S002\"], prep_type=\"extraction\", output_volume=50)";
-    readonly frontend_import: "import { toSamplePrepDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toSamplePrepDataFrame", "toSamplePrepRows", "toSamplePrepColumns"];
-    readonly components: readonly ["DataFrame", "ProtocolStepEditor", "SampleSelector", "WellPlate"];
-    readonly add_command: "mint add data-template sample-prep --page";
-}, {
-    readonly name: "dose-response";
-    readonly template_id: "dose-response";
-    readonly template_version: "1.0";
-    readonly label: "Dose response";
-    readonly category: "bio-data";
-    readonly purpose: "Compounds, concentration series, controls, replicates, and optional plate layout.";
-    readonly aliases: readonly ["drug response", "concentration series", "dose curve", "dose design", "dose planner", "dose calculator", "drp"];
-    readonly python_import: "from mint_sdk.templates import ControlDefinition, DoseResponseTemplate, save_template";
-    readonly python_example: "DoseResponseTemplate.create({\"Compound A\": [10, 1, 0.1]}, unit=\"uM\", replicates=3)";
-    readonly frontend_import: "import { toDoseConditions, toDoseLayoutState } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toDoseConditions", "toDoseLayoutState"];
-    readonly components: readonly ["DoseCalculator", "ReagentEditor", "WellPlate"];
-    readonly add_command: "mint add data-template dose-response --page";
-}, {
-    readonly name: "calibration-curve";
-    readonly template_id: "calibration-curve";
-    readonly template_version: "1.0";
-    readonly label: "Calibration curve";
-    readonly category: "bio-data";
-    readonly purpose: "Standard curves, blank/QC points, fitted model settings, and acceptance thresholds.";
-    readonly aliases: readonly ["standard curve", "calibration", "quantitation", "qc acceptance", "calibrator"];
-    readonly python_import: "from mint_sdk.templates import CalibrationCurveTemplate, save_template";
-    readonly python_example: "CalibrationCurveTemplate.create([0.1, 1, 10, 100], analyte=\"Glucose\", unit=\"uM\")";
-    readonly frontend_import: "import { toCalibrationCurveDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toCalibrationCurveDataFrame", "toCalibrationCurveRows", "toCalibrationCurveColumns"];
-    readonly components: readonly ["DataFrame", "FitPanel", "ChartContainer"];
-    readonly add_command: "mint add data-template calibration-curve --page";
-}, {
-    readonly name: "time-course";
-    readonly template_id: "time-course";
-    readonly template_version: "1.0";
-    readonly label: "Time course";
-    readonly category: "bio-data";
-    readonly purpose: "Longitudinal time points, conditions, replicates, and scheduled samples.";
-    readonly aliases: readonly ["longitudinal", "time series", "sampling schedule", "kinetics"];
-    readonly python_import: "from mint_sdk.templates import TimeCourseTemplate, save_template";
-    readonly python_example: "TimeCourseTemplate.create([0, 6, 24], unit=\"hour\", conditions=[\"Control\", \"Treatment\"], replicates=3)";
-    readonly frontend_import: "import { toTemplateDataFrame, toTimeCourseSteps } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toTimeCourseDataFrame", "toTimeCourseRows", "toTimeCourseSteps", "toTimeCourseColumns"];
-    readonly components: readonly ["ExperimentTimeline", "DataFrame", "ScheduleCalendar"];
-    readonly add_command: "mint add data-template time-course --page";
-}, {
-    readonly name: "protocol-steps";
-    readonly template_id: "protocol-steps";
-    readonly template_version: "1.0";
-    readonly label: "Protocol steps";
-    readonly category: "bio-data";
-    readonly purpose: "Ordered experiment protocol steps, durations, statuses, and run-sheet parameters.";
-    readonly aliases: readonly ["protocol", "run sheet", "workflow", "method steps", "sop"];
-    readonly python_import: "from mint_sdk.templates import ProtocolStepsTemplate, save_template";
-    readonly python_example: "ProtocolStepsTemplate.create([\"Seed cells\", \"Add treatment\", \"Measure viability\"])";
-    readonly frontend_import: "import { toProtocolSteps, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toProtocolSteps", "toProtocolDataFrame"];
-    readonly components: readonly ["ExperimentTimeline", "ProtocolStepEditor", "DataFrame"];
-    readonly add_command: "mint add data-template protocol-steps --page";
-}, {
-    readonly name: "assay-matrix";
-    readonly template_id: "assay-matrix";
-    readonly template_version: "1.0";
-    readonly label: "Assay matrix";
-    readonly category: "bio-data";
-    readonly purpose: "Sample-by-feature measurement matrices for omics, plate-reader, and marker assays.";
-    readonly aliases: readonly ["omics matrix", "measurement matrix", "readout matrix", "feature table"];
-    readonly python_import: "from mint_sdk.templates import AssayMatrixTemplate, save_template";
-    readonly python_example: "AssayMatrixTemplate.create(samples=[\"S001\", \"S002\"], features=[\"Lactate\", \"Glucose\"])";
-    readonly frontend_import: "import { toAssayMatrixSampleOptions, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toAssayMatrixDataFrame", "toAssayMatrixRows", "toAssayMatrixColumns", "toAssayMatrixSampleOptions"];
-    readonly components: readonly ["DataFrame", "ChartContainer", "SampleSelector"];
-    readonly add_command: "mint add data-template assay-matrix --page";
-}, {
-    readonly name: "reagent-list";
-    readonly template_id: "reagent-list";
-    readonly template_version: "1.0";
-    readonly label: "Reagent list";
-    readonly category: "bio-data";
-    readonly purpose: "Experiment reagents, catalog numbers, lots, storage, locations, and stock status.";
-    readonly aliases: readonly ["reagents", "inventory", "antibodies", "primers", "compound stocks"];
-    readonly python_import: "from mint_sdk.templates import ReagentListTemplate, save_template";
-    readonly python_example: "ReagentListTemplate.create([\"DMSO\", \"Compound A\", \"Anti-HA antibody\"])";
-    readonly frontend_import: "import { toReagentListItems, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toReagentDataFrame", "toReagentListItems"];
-    readonly components: readonly ["ReagentList", "DataFrame", "ReagentEditor"];
-    readonly add_command: "mint add data-template reagent-list --page";
-}, {
-    readonly name: "flow-cytometry-panel";
-    readonly template_id: "flow-cytometry-panel";
-    readonly template_version: "1.0";
-    readonly label: "Flow cytometry panel";
-    readonly category: "bio-data";
-    readonly purpose: "Flow-cytometry markers, fluorophores, detectors, compensation controls, and panel metadata.";
-    readonly aliases: readonly ["flow panel", "facs panel", "cytometry panel", "antibody panel"];
-    readonly python_import: "from mint_sdk.templates import FlowCytometryPanelTemplate, save_template";
-    readonly python_example: "FlowCytometryPanelTemplate.create([\"CD3\", \"CD4\", \"CD8\"], instrument=\"BD LSRFortessa\")";
-    readonly frontend_import: "import { toFlowPanelDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toFlowPanelDataFrame", "toFlowPanelRows", "toFlowPanelColumns"];
-    readonly components: readonly ["DataFrame", "ReagentList", "SampleSelector"];
-    readonly add_command: "mint add data-template flow-cytometry-panel --page";
-}, {
-    readonly name: "instrument-run";
-    readonly template_id: "instrument-run";
-    readonly template_version: "1.0";
-    readonly label: "Instrument run";
-    readonly category: "bio-data";
-    readonly purpose: "Instrument sequence tables, sample queues, methods, QC, blanks, and acquisition status.";
-    readonly aliases: readonly ["run queue", "sequence table", "sample queue", "lcms run", "instrument sequence", "batch run"];
-    readonly python_import: "from mint_sdk.templates import InstrumentRunTemplate, save_template";
-    readonly python_example: "InstrumentRunTemplate.create([\"S001\", \"S002\"], instrument=\"LC-MS\")";
-    readonly frontend_import: "import { toInstrumentRunDataFrame, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toInstrumentRunDataFrame", "toInstrumentRunRows", "toInstrumentRunColumns", "toInstrumentRunSteps", "toInstrumentRunScheduleEvents"];
-    readonly components: readonly ["DataFrame", "ExperimentTimeline", "ScheduleCalendar", "SampleSelector"];
-    readonly add_command: "mint add data-template instrument-run --page";
-}, {
-    readonly name: "qpcr-plate";
-    readonly template_id: "qpcr-plate";
-    readonly template_version: "1.0";
-    readonly label: "qPCR plate";
-    readonly category: "bio-data";
-    readonly purpose: "qPCR/ddPCR plate layouts, samples, targets, replicate reactions, controls, and Cq fields.";
-    readonly aliases: readonly ["qpcr", "qPCR", "ddpcr", "rt-qpcr", "gene expression", "primer plate"];
-    readonly python_import: "from mint_sdk.templates import QpcrPlateTemplate, save_template";
-    readonly python_example: "QpcrPlateTemplate.create(samples=[\"Control\", \"Treatment\"], targets=[\"ACTB\", \"GAPDH\"], replicates=3)";
-    readonly frontend_import: "import { toQpcrDataFrame, toQpcrWellPlateWells, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toQpcrDataFrame", "toQpcrRows", "toQpcrColumns", "toQpcrWellPlateWells"];
-    readonly components: readonly ["DataFrame", "WellPlate", "SampleSelector"];
-    readonly add_command: "mint add data-template qpcr-plate --page";
-}];
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function listBioTemplateCatalog(): readonly BioTemplateCatalogEntry[];
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function getBioTemplateInfo(name: string): BioTemplateCatalogEntry | undefined;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function searchBioTemplateCatalog(query: string): readonly BioTemplateCatalogEntry[];

package/dist/templates/componentBindingCatalog.d.ts

@@ -1,25 +0,0 @@
-import { TemplateId } from './types';
-interface ComponentBinding {
-    id: string;
-    template_id: TemplateId;
-    component: string;
-    adapters: readonly string[];
-    props: readonly string[];
-    description: string;
-    importPath: '@morscherlab/mint-sdk';
-}
-export declare const templateComponentBindings: {
-    'plate-map': ComponentBinding[];
-    'sample-sheet': ComponentBinding[];
-    'sample-prep': ComponentBinding[];
-    'dose-response': ComponentBinding[];
-    'calibration-curve': ComponentBinding[];
-    'time-course': ComponentBinding[];
-    'protocol-steps': ComponentBinding[];
-    'assay-matrix': ComponentBinding[];
-    'reagent-list': ComponentBinding[];
-    'flow-cytometry-panel': ComponentBinding[];
-    'instrument-run': ComponentBinding[];
-    'qpcr-plate': ComponentBinding[];
-};
-export {};

package/dist/templates/componentBindingHelpers.d.ts

@@ -1,17 +0,0 @@
-interface CloneableComponentBinding {
-    adapters: readonly string[];
-    props: readonly string[];
-}
-interface NamedComponentBinding {
-    template_id: string;
-    component: string;
-}
-interface ComponentImportStatement {
-    statement: string;
-}
-export declare function cloneBindingMap<TName extends string, TBinding extends CloneableComponentBinding>(bindings: Record<TName, readonly TBinding[]>): Record<TName, TBinding[]>;
-export declare function cloneBindings<TBinding extends CloneableComponentBinding>(bindings: readonly TBinding[]): TBinding[];
-export declare function cloneBinding<TBinding extends CloneableComponentBinding>(binding: TBinding): TBinding;
-export declare function uniquePropsName(binding: NamedComponentBinding, usedNames: Map<string, number>): string;
-export declare function toVueSfc(imports: readonly ComponentImportStatement[], setupLines: readonly string[], template: string, includeTargetTypeImport: boolean): string;
-export {};

package/dist/templates/componentBindings.d.ts

@@ -1,97 +0,0 @@
-import { BioTemplateEnvelope, TemplateCollectionEnvelope, TemplateId, TemplatePackId, TemplatePresetId } from './types';
-export type BioTemplateComponentTarget = TemplateId | TemplatePackId | TemplatePresetId | string | BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope;
-export interface BioTemplateComponentBinding {
-    id: string;
-    template_id: TemplateId;
-    component: string;
-    adapters: readonly string[];
-    props: readonly string[];
-    description: string;
-    importPath: '@morscherlab/mint-sdk';
-}
-export interface BioTemplateComponentPropsBinding extends BioTemplateComponentBinding {
-    propsObject: Record<string, unknown>;
-}
-export interface BioTemplateResolvedComponentBinding extends Omit<BioTemplateComponentBinding, 'props'> {
-    /** Prop names advertised by the static template/component compatibility catalog. */
-    propNames: readonly string[];
-    /** Concrete props ready for direct `v-bind="componentBindingsById[id].props"` use. */
-    props: Record<string, unknown>;
-    /** Backward-compatible alias for callers that already consume componentProps entries. */
-    propsObject: Record<string, unknown>;
-}
-export type BioTemplateComponentBindingsById = Record<string, BioTemplateResolvedComponentBinding>;
-export type BioTemplateComponentPropsById = Record<string, Record<string, unknown>>;
-export type BioTemplateComponentPropsByComponent = Record<string, Record<string, unknown>[]>;
-export interface BioTemplateComponentPropsLookupOptions {
-    templateId?: TemplateId;
-    id?: string;
-}
-export interface BioTemplateComponentImport {
-    importPath: BioTemplateComponentBinding['importPath'];
-    components: string[];
-    statement: string;
-}
-export interface BioTemplateComponentSnippet extends BioTemplateComponentBinding {
-    propsName: string;
-    propsExpression: string;
-    template: string;
-}
-export interface BioTemplateComponentSnippetOptions {
-    propsVariable?: string;
-}
-export interface BioTemplateComponentUsageOptions extends BioTemplateComponentSnippetOptions {
-    targetExpression?: string;
-    targetPropName?: string;
-}
-export interface BioTemplateComponentUsage {
-    imports: BioTemplateComponentImport[];
-    componentProps: BioTemplateComponentPropsBinding[];
-    snippets: BioTemplateComponentSnippet[];
-    propsDeclarations: string[];
-    scriptSetup: string;
-    template: string;
-    sfc: string;
-}
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function listBioTemplateComponentBindings(): Record<TemplateId, BioTemplateComponentBinding[]>;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function getBioTemplateComponentBindings(target: BioTemplateComponentTarget): BioTemplateComponentBinding[];
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toBioTemplateComponentProps(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateComponentPropsBinding[];
-/**
- * Return resolved component bindings with concrete props for direct slot rendering.
- *
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function toBioTemplateComponentBindings(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateResolvedComponentBinding[];
-/**
- * Return resolved component bindings keyed by stable template component id.
- *
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function toBioTemplateComponentBindingsById(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateComponentBindingsById;
-/**
- * Return component props keyed by stable binding id for direct `v-bind="componentPropsById[id]"` use.
- *
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function toBioTemplateComponentPropsById(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateComponentPropsById;
-/**
- * Return component props grouped by SDK component name for direct WellPlate/DoseCalculator binding.
- *
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function toBioTemplateComponentPropsByComponent(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateComponentPropsByComponent;
-/**
- * Return the first props object for an SDK component, optionally restricted by template id or binding id.
- *
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function getBioTemplateComponentProps(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope, component: string, options?: BioTemplateComponentPropsLookupOptions): Record<string, unknown> | undefined;
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toBioTemplateComponentImports(target: BioTemplateComponentTarget): BioTemplateComponentImport[];
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toBioTemplateComponentSnippets(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope, options?: BioTemplateComponentSnippetOptions): BioTemplateComponentSnippet[];
-/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
-export declare function toBioTemplateComponentUsage(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope, options?: BioTemplateComponentUsageOptions): BioTemplateComponentUsage;

package/dist/templates/componentDoseResponseProps.d.ts

@@ -1,3 +0,0 @@
-import { BioTemplateComponentPropsBinding } from './componentBindings';
-import { DoseResponseTemplate } from './types';
-export declare function doseResponseProps(template: DoseResponseTemplate): BioTemplateComponentPropsBinding[];

package/dist/templates/componentGenericProps.d.ts

@@ -1,8 +0,0 @@
-import { BioTemplateComponentPropsBinding } from './componentBindings';
-import { AssayMatrixTemplate, DataFrameTemplate, InstrumentRunTemplate, ProtocolStepsTemplate, ReagentListTemplate, SampleSheetTemplate, TimeCourseTemplate } from './types';
-export declare function dataFrameProps(template: DataFrameTemplate): BioTemplateComponentPropsBinding;
-export declare function sampleSelectorProps(template: SampleSheetTemplate): BioTemplateComponentPropsBinding;
-export declare function assayMatrixSampleSelectorProps(template: AssayMatrixTemplate): BioTemplateComponentPropsBinding;
-export declare function timelineProps(template: TimeCourseTemplate | ProtocolStepsTemplate | InstrumentRunTemplate, steps: unknown[], editable?: boolean): BioTemplateComponentPropsBinding;
-export declare function scheduleCalendarProps(template: InstrumentRunTemplate): BioTemplateComponentPropsBinding;
-export declare function reagentListProps(template: ReagentListTemplate): BioTemplateComponentPropsBinding;

package/dist/templates/componentPlateHelpers.d.ts

@@ -1,11 +0,0 @@
-import { PlateMapEditorState, Rack, WellLegendItem } from '../types';
-export declare function activePlateFromState(state: PlateMapEditorState): import('..').PlateMap;
-export declare function sampleColorsFromPlateState(state: PlateMapEditorState): Record<string, string>;
-export declare function legendItemsFromPlateState(state: PlateMapEditorState): WellLegendItem[];
-export declare function colorForIndex(index: number): string;
-/**
- * Plates as PlateEditor racks: slots assigned in order, a well's sample id moved to its group (the stored
- * plate map keeps it in `sampleType`). Plate maps carry no injection volume.
- * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
- */
-export declare function racksFromPlateState(state: PlateMapEditorState): Rack[];

package/dist/templates/componentPlateMapProps.d.ts

@@ -1,3 +0,0 @@
-import { BioTemplateComponentPropsBinding } from './componentBindings';
-import { PlateMapTemplate } from './types';
-export declare function plateMapProps(template: PlateMapTemplate): BioTemplateComponentPropsBinding[];

package/dist/templates/componentPropsFactory.d.ts

@@ -1,3 +0,0 @@
-import { BioTemplateComponentPropsBinding } from './componentBindings';
-import { TemplateId } from './types';
-export declare function propsBinding(templateId: TemplateId, component: string, propsObject: Record<string, unknown>): BioTemplateComponentPropsBinding;

package/dist/templates/componentQpcrPlateProps.d.ts

@@ -1,3 +0,0 @@
-import { BioTemplateComponentPropsBinding } from './componentBindings';
-import { QpcrPlateTemplate } from './types';
-export declare function qpcrPlateProps(template: QpcrPlateTemplate): BioTemplateComponentPropsBinding[];

package/dist/templates/componentTargetResolvers.d.ts

@@ -1,5 +0,0 @@
-import { BioTemplateEnvelope, TemplateCollectionEnvelope, TemplateId, TemplatePackId, TemplatePresetId } from './types';
-type BioTemplateComponentTarget = TemplateId | TemplatePackId | TemplatePresetId | string | BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope;
-export declare function resolveComponentTemplateIds(target: BioTemplateComponentTarget): TemplateId[];
-export declare function isTemplateEnvelope(value: unknown): value is BioTemplateEnvelope<unknown>;
-export {};

package/dist/templates/componentTemplateProps.d.ts

@@ -1,3 +0,0 @@
-import { BioTemplateComponentPropsBinding } from './componentBindings';
-import { BioTemplateEnvelope } from './types';
-export declare function propsForTemplate(template: BioTemplateEnvelope<unknown>): BioTemplateComponentPropsBinding[];

package/dist/templates/controlSchemaClone.d.ts

@@ -1,4 +0,0 @@
-import { BioTemplateControlSchema } from './controlSchemaTypes';
-export declare function cloneSchemaMap<TName extends string>(schemas: Record<TName, BioTemplateControlSchema>): Record<TName, BioTemplateControlSchema>;
-export declare function cloneControlSchema(schema: BioTemplateControlSchema): BioTemplateControlSchema;
-export declare function cloneControlDefinition(definition: BioTemplateControlSchema[string]): BioTemplateControlSchema[string];