@morscherlab/mint-sdk 1.3.8 → 1.4.0-beta.1

package/src/deprecatedRootExports.ts

@@ -0,0 +1,226 @@
+// Package-root names that spec 3.1 and 3.3 do not list as L1 or L2 (maintainer decision
+// 2026-10-23). Each name is also exported from the subpath in its tag. Removed in MINT 1.5.
+// `export *` keeps the tags, so editors mark a root import of these names as deprecated.
+
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ useConcentrationUnits,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type ConcentrationValue,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type ConcentrationUnit,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type MolarityUnit,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type MassVolumeUnit,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type PercentageUnit,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type UnitCategory,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type UseConcentrationUnitsReturn,
+} from './composables/useConcentrationUnits'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ useProtocolTemplates,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type ParameterDefinition,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type StepTemplate,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type ValidationResult,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type UseProtocolTemplatesReturn,
+} from './composables/useProtocolTemplates'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ useRackEditor,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type UseRackEditorOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type UseRackEditorReturn,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type PlateEditorListeners,
+} from './composables/useRackEditor'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ useSequenceUtils,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type SequenceType,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type SequenceStats,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type SequenceProblems,
+} from './composables/useSequenceUtils'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ useScheduleDrag,
+} from './composables/useScheduleDrag'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ useReagentSeries,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ generateDilutionSeries,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ DEFAULT_PRESETS,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ DEFAULT_UNITS,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type LevelEntry,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type DilutionPreset,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type UseReagentSeriesReturn,
+} from './composables/useReagentSeries'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ useSampleGroups,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type DisplaySampleSubGroup,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type SampleGroupNode,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type SampleGroupSource,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type SampleMajorGroup,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type UseSampleGroupsOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type UseSampleGroupsReturn,
+} from './composables/useSampleGroups'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ hexToHsl,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ hslToHex,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ deriveShade,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type Hsl,
+} from './utils/color'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ sampleTypeMarker,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type SampleMarkerType,
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ type SampleTypeMarker,
+} from './utils/sampleTypeMarker'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/lab'. Removed in MINT 1.5. */ mintPlotlyTemplate,
+} from './utils/plotlyTemplate'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ resizedLeadingPanelWidth,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ resizedTrailingPanelWidth,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ resizedVerticalSplitPercent,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ useManualLayoutResize,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type ManualLayoutResizeContext,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type ManualLayoutResizeTarget,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type ResizePanelWidthConstraints,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type ResizePercentConstraints,
+} from './composables/useManualLayoutResize'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ useSelectionLimit,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type SelectionLimitSource,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UseSelectionLimitOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UseSelectionLimitReturn,
+} from './composables/useSelectionLimit'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ useListSelection,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type ListSelectionSource,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type ListSelectionValue,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UseListSelectionOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UseListSelectionReturn,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type WidenListSelectionValue,
+} from './composables/useListSelection'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ useExpansionSet,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type ExpansionSetSource,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UseExpansionSetOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UseExpansionSetReturn,
+} from './composables/useExpansionSet'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ compareSortValues,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ useSortedItems,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type CompareSortValuesOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type SortComparator,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type SortComparatorContext,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type SortDescriptor,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type SortedItemsSource,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type SortOrder,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UseSortedItemsOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UseSortedItemsReturn,
+} from './composables/useSortedItems'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ usePluginWorkspace,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type PluginWorkspaceSlotsLike,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UsePluginWorkspaceOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/shell'. Removed in MINT 1.5. */ type UsePluginWorkspaceReturn,
+} from './composables/usePluginWorkspace'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ useExperimentSelector,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseExperimentSelectorOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseExperimentSelectorReturn,
+} from './composables/useExperimentSelector'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ useFileBrowser,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseFileBrowserOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseFileBrowserReturn,
+} from './composables/useFileBrowser'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ buildAnalysisArtifactTargetQuery,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ parseAnalysisArtifactTarget,
+} from './composables/analysisArtifactTarget'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ formatExperimentDate,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ resolveExperimentCode,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ datePresetToISO,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ DATE_PRESET_OPTIONS,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ SORT_OPTIONS,
+} from './composables/experiment-utils'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ extractSampleNamesFromDesignData,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ extractSampleOptionsFromDesignData,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ unwrapExperimentDesignData,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type ExperimentDesignDataResponse,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type ExtractExperimentSamplesOptions,
+} from './composables/experimentDesignData'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ useExperimentSamples,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type ExperimentDesignDataSource,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type ExperimentIdSource,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseExperimentSamplesOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseExperimentSamplesReturn,
+} from './composables/useExperimentSamples'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ useAppExperiment,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ APP_EXPERIMENT_KEY,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseAppExperimentOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseAppExperimentReturn,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type AppExperimentState,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type AppExperimentPopoverBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type AppExperimentSelectorModalBinding,
+} from './composables/useAppExperiment'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ detectDelimiter,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ readFileAsText,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ useFileImport,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ validateImportFile,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type FileImportOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type FileImportValidationOptions,
+  /** @deprecated Import from '@morscherlab/mint-sdk/data'. Removed in MINT 1.5. */ type UseFileImportReturn,
+} from './composables/useFileImport'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ useForm,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ValidationRule,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type FieldRules,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type FieldState,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type UseFormReturn,
+} from './composables/useForm'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ useFormBuilder,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ evaluateCondition,
+} from './composables/useFormBuilder'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ getFieldRegistryEntry,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ getTypeDefault,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type RegistryEntry,
+} from './composables/formBuilderRegistry'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ defineControlComponentBindings,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ defineControls,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ getDefaultControlView,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ getControlDefaults,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ useControlSchema,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ useControlWorkspace,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlFormSchema,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlFormBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlSettingsBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlSidebarBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlTopBarSettingsBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlValues,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type UseControlSchemaReturn,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlWorkspaceAppTopBarPillBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlWorkspaceComponentBindings,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlWorkspaceFormBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlWorkspacePillNavBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlWorkspaceSidebarBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlWorkspaceTopBarBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type ControlWorkspaceTopBarSettingsBinding,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type UseControlWorkspaceReturn,
+} from './composables/useControlSchema'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ resolveCurrentPluginId,
+} from './composables/platformContextHelpers'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ resolveJobCapabilities,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ normalizeJobPercent,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ normalizeJobState,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ isActiveJobStatus,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ isTerminalJobStatus,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ jobStatusLabel,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type JobCapabilityInput,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ type JobCapabilities,
+} from './jobs'
+export {
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ generatedJobFormSchema,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ generatedJobDefaults,
+  /** @deprecated Import from '@morscherlab/mint-sdk/runtime'. Removed in MINT 1.5. */ normalizeGeneratedJobInput,
+} from './generated/schema'

package/src/generated/schema.ts

@@ -31,6 +31,7 @@ export function generatedJobFormSchema(definition: GeneratedJobDefinition): Form
       columns: 1,
       fields,
     }],
+    actions: true,
     submitLabel: 'Run analysis',
   }
 }

package/src/host.ts

@@ -0,0 +1,27 @@
+// Platform-only entry (`@morscherlab/mint-sdk/host`). Plugins do not import it.
+// The platform writes its session into the SDK session bridge through these functions.
+
+import { AUTH_EXPIRES_STORAGE_KEY, AUTH_TOKEN_STORAGE_KEY, useAuthStore } from './stores/auth'
+import type { UserInfo } from './types'
+
+export { AUTH_EXPIRES_STORAGE_KEY, AUTH_TOKEN_STORAGE_KEY }
+export type { ExperimentStoreBinding, MintIntegrationHost } from './utils/integrationHost'
+
+/** Set the session token SDK clients send. `null` signs the bridge out. */
+export function setSession(token: string | null, expiresAt: Date | null = null): void {
+  useAuthStore().$patch((state) => {
+    state.token = token
+    state.tokenExpires = token ? expiresAt : null
+    state.isInitialized = true
+  })
+}
+
+/** Set the signed-in user SDK components read. */
+export function setSessionUser(user: UserInfo | null): void {
+  useAuthStore().$patch((state) => { state.userInfo = user })
+}
+
+/** Tell SDK components whether the platform requires sign-in. */
+export function setAuthRequired(required: boolean): void {
+  useAuthStore().$patch((state) => { state.authRequired = required })
+}

package/src/index.ts

@@ -12,81 +12,12 @@ export * from './components'
 
 // Composables
 export * from './composables'
-// Resolve names shared by composables and templates so root exports stay unambiguous.
-export {
-  getBioTemplateComponentProps,
-  toBioTemplateComponentPropsByComponent,
-  type ControlDefinition,
-} from './composables'
 
 // Stores
 export * from './stores'
 
-// Permissions
-export * from './permissions'
-
-// Instrument monitoring. Deprecated: scheduled for removal in MINT 1.4 (moves to the mld-ms plugins).
-export * from './instrument'
-
-// Job state helpers
-export * from './jobs'
-
-// Experimental generated analysis workspace
-export * from './generated/schema'
-
-// LCMS sequence helpers. Deprecated: scheduled for removal in MINT 1.4, no SDK replacement.
-export * from './lcms'
-
-// Utils
-export {
-  hexToHsl,
-  hslToHex,
-  deriveShade,
-  type Hsl,
-} from './utils/color'
-export {
-  PLUGIN_SECRET_FORMAT_KEY,
-  PLUGIN_SECRET_FORMAT_REF,
-  PLUGIN_SECRET_REF_KEY,
-  clearPluginSecret,
-  isPluginSecretLocked,
-  isPluginSecretRef,
-  keepPluginSecret,
-  pluginSecretId,
-  pluginSecretLabel,
-  pluginSecretState,
-  setPluginSecret,
-  usesPluginSecretReferences,
-  type PluginSecretRef,
-  type PluginSecretState,
-} from './utils/pluginSecrets'
-export {
-  sampleTypeMarker,
-  type SampleMarkerType,
-  type SampleTypeMarker,
-} from './utils/sampleTypeMarker'
-export { mintPlotlyTemplate } from './utils/plotlyTemplate'
-export {
-  LCMS_DEFAULT_CONTROL_POSITIONS,
-  createLcmsControlWellEditData,
-  getLcmsDefaultControlWellId,
-  lcmsPlateCellsToRack,
-  lcmsPlateCellsToRacks,
-  lcmsPlateTypeToRackFormat,
-  lcmsWellId,
-  parseLcmsWellId,
-  rackFormatToLcmsPlateType,
-  rackToLcmsPlateCells,
-  racksToLcmsPlateCells,
-  type LcmsControlSampleType,
-  type LcmsPlateCell,
-  type LcmsPlateCellsToRackOptions,
-  type LcmsPlateCellsToRacksOptions,
-  type LcmsPlateType,
-} from './utils/rack'
-
-// Biology data templates. Deprecated: scheduled for removal from the core SDK in MINT 1.4.
-export * from './templates'
+// Root names outside L1 and L2, deprecated until MINT 1.5
+export * from './deprecatedRootExports'
 
 // Types
 export type * from './types'

package/src/install.ts

@@ -1,4 +1,16 @@
-import * as components from './components'
+import * as rootComponents from './components'
+import * as dataComponents from './data'
+import * as labComponents from './lab'
+import * as runtimeComponents from './runtime'
+import * as shellComponents from './shell'
+
+const components = {
+  ...rootComponents,
+  ...labComponents,
+  ...shellComponents,
+  ...dataComponents,
+  ...runtimeComponents,
+}
 
 type ComponentRegistryApp = {
   component: (name: string, component: any) => unknown
@@ -9,7 +21,8 @@ export interface MINTSdkPlugin {
 }
 
 /**
- * Vue plugin that registers all MINT SDK components globally.
+ * Vue plugin that registers all MINT SDK components globally, including the
+ * components of the `lab`, `shell`, `data` and `runtime` subpaths.
  *
  * @example
  * ```typescript

package/src/instrument.ts

@@ -1,18 +1,16 @@
+// Private SequenceProgressBar helpers; not part of the public SDK surface since MINT 1.4.
 import type { SequenceProgress } from './types'
 
-/** @deprecated Scheduled for removal in MINT 1.4; instrument monitor helpers move to the mld-ms plugins. */
 export function sequenceProgressPercent(progress: SequenceProgress | null | undefined): number {
   if (!progress || progress.total_samples <= 0) return 0
   return Math.round(clamp((progress.current_sample / progress.total_samples) * 100, 0, 100))
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; instrument monitor helpers move to the mld-ms plugins. */
 export function sequenceSamplesRemaining(progress: SequenceProgress | null | undefined): number {
   if (!progress) return 0
   return Math.max(0, progress.total_samples - progress.current_sample)
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; instrument monitor helpers move to the mld-ms plugins. */
 export function estimateSequenceRemainingSeconds(
   progress: SequenceProgress | null | undefined,
 ): number | null {
@@ -34,7 +32,6 @@ export function estimateSequenceRemainingSeconds(
   return null
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; instrument monitor helpers move to the mld-ms plugins. */
 export function estimateSequenceFinishDate(
   progress: SequenceProgress | null | undefined,
   now = new Date(),
@@ -49,7 +46,6 @@ export function estimateSequenceFinishDate(
   return new Date(now.getTime() + remaining * 1000)
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; instrument monitor helpers move to the mld-ms plugins. */
 export function formatSequenceRemaining(progress: SequenceProgress | null | undefined): string | null {
   const remaining = estimateSequenceRemainingSeconds(progress)
   if (remaining == null || remaining <= 0) return null
@@ -63,7 +59,6 @@ export function formatSequenceRemaining(progress: SequenceProgress | null | unde
   return mins > 0 ? `~${hours}h ${mins}m left` : `~${hours}h left`
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; instrument monitor helpers move to the mld-ms plugins. */
 export function formatSequenceEta(
   progress: SequenceProgress | null | undefined,
   locale?: Intl.LocalesArgument,

package/src/lab.ts

@@ -0,0 +1,128 @@
+// Lab, plate, chemistry, scheduling and scientific display components (`@morscherlab/mint-sdk/lab`).
+
+// Biological experiment components
+export { default as WellPlate } from './components/WellPlate.vue'
+export { default as PlateEditor } from './components/PlateEditor.vue'
+export { defineWellPlate, definePlateEditor } from './composables/componentSpecs'
+
+// Sample management components
+/** Interactive sample list with drag-and-drop group assignment, color labeling, and smart-group support. */
+export { default as SampleSelector } from './components/SampleSelector.vue'
+
+// Lab/Experiment components
+export { default as MoleculeInput } from './components/MoleculeInput.vue'
+export { default as ConcentrationInput } from './components/ConcentrationInput.vue'
+export { default as DoseCalculator } from './components/DoseCalculator.vue'
+export { default as SampleHierarchyTree } from './components/SampleHierarchyTree.vue'
+export { default as ProtocolStepEditor } from './components/ProtocolStepEditor.vue'
+
+// Scientific display components
+export { default as PlotlyChart } from './components/PlotlyChart.vue'
+export { default as ChartContainer } from './components/ChartContainer.vue'
+export { default as ScientificNumber } from './components/ScientificNumber.vue'
+export { default as ChemicalFormula } from './components/ChemicalFormula.vue'
+export { default as AdductText } from './components/AdductText.vue'
+/** Displays LC/MS or GC/MS acquisition sequence progress with ETA and remaining-time labels. */
+export { default as SequenceProgressBar } from './components/SequenceProgressBar.vue'
+/** Status badge for instrument states: a tone dot (or dash / hollow shape for offline, never-reported and inactive) plus a label. */
+export { default as InstrumentStateBadge } from './components/InstrumentStateBadge.vue'
+/** Live-data card for an instrument status: one tab per typed panel (key/value, table, text, JSON, bar chart). */
+export { default as InstrumentStatusPanels } from './components/InstrumentStatusPanels.vue'
+
+// Scientific input components
+export { default as FormulaInput } from './components/FormulaInput.vue'
+export { default as SequenceInput } from './components/SequenceInput.vue'
+
+// Scheduling / booking components
+export { default as TimeRangeInput } from './components/TimeRangeInput.vue'
+export { default as ScheduleCalendar } from './components/ScheduleCalendar.vue'
+export { default as ResourceCard } from './components/ResourceCard.vue'
+
+// Workflow components
+export { default as StepWizard } from './components/StepWizard.vue'
+
+// Time, dose and chemical formula helpers
+export * as time from './utils/time'
+export * as dose from './utils/dose'
+export * as formula from './utils/formula'
+
+// Dose control recipes
+export {
+  defineDoseCalculatorControlProps,
+  defineDoseDesignControlModel,
+  defineWellPlateControlProps,
+  defineWellPlateDoseComponentBindings,
+  defineWellPlateDoseControlProps,
+} from './composables/controlSchemaDoseDesign'
+export type {
+  DoseCalculatorControlPropsOptions,
+  DoseDesignControlModelOptions,
+  WellPlateControlPropsOptions,
+  WellPlateDoseControlPropsOptions,
+} from './composables/controlSchemaTypes'
+
+// Lab composables and helpers
+export {
+  useConcentrationUnits,
+  type ConcentrationValue,
+  type ConcentrationUnit,
+  type MolarityUnit,
+  type MassVolumeUnit,
+  type PercentageUnit,
+  type UnitCategory,
+  type UseConcentrationUnitsReturn,
+} from './composables/useConcentrationUnits'
+export {
+  useProtocolTemplates,
+  type ParameterDefinition,
+  type StepTemplate,
+  type ValidationResult,
+  type UseProtocolTemplatesReturn,
+} from './composables/useProtocolTemplates'
+export {
+  useRackEditor,
+  type UseRackEditorOptions,
+  type UseRackEditorReturn,
+  type PlateEditorListeners,
+} from './composables/useRackEditor'
+export {
+  useSequenceUtils,
+  type SequenceType,
+  type SequenceStats,
+  type SequenceProblems,
+} from './composables/useSequenceUtils'
+export {
+  useScheduleDrag,
+} from './composables/useScheduleDrag'
+export {
+  useReagentSeries,
+  generateDilutionSeries,
+  DEFAULT_PRESETS,
+  DEFAULT_UNITS,
+  type LevelEntry,
+  type DilutionPreset,
+  type UseReagentSeriesReturn,
+} from './composables/useReagentSeries'
+export {
+  useSampleGroups,
+  type DisplaySampleSubGroup,
+  type SampleGroupNode,
+  type SampleGroupSource,
+  type SampleMajorGroup,
+  type UseSampleGroupsOptions,
+  type UseSampleGroupsReturn,
+} from './composables/useSampleGroups'
+export {
+  hexToHsl,
+  hslToHex,
+  deriveShade,
+  type Hsl,
+} from './utils/color'
+export {
+  sampleTypeMarker,
+  type SampleMarkerType,
+  type SampleTypeMarker,
+} from './utils/sampleTypeMarker'
+export {
+  mintPlotlyTemplate,
+} from './utils/plotlyTemplate'

package/src/permissions.ts

@@ -1,15 +1,5 @@
 export const ADMIN_ROLE = 'admin'
 
-export const ADMIN_PANEL_PERMISSIONS = [
-  'users.view',
-  'users.manage',
-  'platform.configure',
-  'platform.view_logs',
-  'plugins.configure',
-  'plugins.install',
-  'notices.publish',
-] as const
-
 export type AccessAudience = 'all' | 'admin' | 'user'
 export type AccessAudienceInput = AccessAudience | readonly AccessAudience[]
 
@@ -37,7 +27,6 @@ export interface AccessPolicy {
   requiresAdmin?: boolean
   permissions?: readonly string[]
   anyPermissions?: readonly string[]
-  plugin?: string
 }
 
 /** An object that carries an access rule in its nested `access` policy. */
@@ -87,21 +76,6 @@ export function hasAnyPermission(
   return permissions.some(permission => granted.has(permission))
 }
 
-export function canAccessAdmin(user: PermissionUser | null | undefined): boolean {
-  return isAdminUser(user) || hasAnyPermission(user, ADMIN_PANEL_PERMISSIONS)
-}
-
-export function canAccessPlugin(
-  user: PermissionUser | null | undefined,
-  pluginName: string | null | undefined,
-): boolean {
-  if (!pluginName || isAdminUser(user)) return true
-  const access = getRoleInfo(user)?.plugin_access
-  // As on the platform: a value that is not null, 'all' or a list allows no plugin.
-  if (access == null || access === 'all') return true
-  return Array.isArray(access) && access.includes(pluginName)
-}
-
 export function canAccessByPolicy(
   user: PermissionUser | null | undefined,
   policy: AccessPolicy = {},
@@ -112,7 +86,6 @@ export function canAccessByPolicy(
   if (!audienceAllowsUser(policy.visibleFor ?? policy.audience, user)) return false
   if (!hasAllPermissions(user, policy.permissions)) return false
   if (!hasAnyPermission(user, policy.anyPermissions)) return false
-  if (policy.plugin && !canAccessPlugin(user, policy.plugin)) return false
   return true
 }