@morscherlab/mint-sdk 1.3.11 → 1.4.0-beta.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1056) hide show
  1. package/README.md +152 -177
  2. package/dist/AlertBox-B2Bgr3ei.js +276 -0
  3. package/dist/AlertBox-B2Bgr3ei.js.map +1 -0
  4. package/dist/AppSidebar-mvm--GxN.js +3565 -0
  5. package/dist/AppSidebar-mvm--GxN.js.map +1 -0
  6. package/dist/ConfirmDialog-nbJj51is.js +102 -0
  7. package/dist/ConfirmDialog-nbJj51is.js.map +1 -0
  8. package/dist/ExperimentPopover-5T1fAq2L.js +337 -0
  9. package/dist/ExperimentPopover-5T1fAq2L.js.map +1 -0
  10. package/dist/ExperimentSelectorModal-65peG4Up.js +544 -0
  11. package/dist/ExperimentSelectorModal-65peG4Up.js.map +1 -0
  12. package/dist/SegmentedControl-BtnnjWzs.js +129 -0
  13. package/dist/SegmentedControl-BtnnjWzs.js.map +1 -0
  14. package/dist/SettingsModal-DO3IZ7qz.js +666 -0
  15. package/dist/SettingsModal-DO3IZ7qz.js.map +1 -0
  16. package/dist/analysisArtifactTypes-Cy3D0Ipg.js.map +1 -1
  17. package/dist/auth-SliLnFre.js +65 -0
  18. package/dist/auth-SliLnFre.js.map +1 -0
  19. package/dist/components/ActionMenu.vue.d.ts +1 -1
  20. package/dist/components/AdductText.vue.d.ts +1 -1
  21. package/dist/components/AlertBox.vue.d.ts +3 -3
  22. package/dist/components/AppContainer.vue.d.ts +1 -1
  23. package/dist/components/AppSidebar.vue.d.ts +15 -95
  24. package/dist/components/AppTopBar.vue.d.ts +16 -70
  25. package/dist/components/ArtifactSaveDialog.vue.d.ts +13 -5
  26. package/dist/components/ArtifactSelectorModal.vue.d.ts +4 -4
  27. package/dist/components/AuditTrail.vue.d.ts +2 -2
  28. package/dist/components/BaseButton.vue.d.ts +11 -4
  29. package/dist/components/BaseCheckbox.vue.d.ts +9 -3
  30. package/dist/components/BaseInput.vue.d.ts +13 -9
  31. package/dist/components/BaseModal.vue.d.ts +4 -4
  32. package/dist/components/BasePill.vue.d.ts +15 -8
  33. package/dist/components/BaseRadioGroup.vue.d.ts +2 -2
  34. package/dist/components/BaseSelect.vue.d.ts +51 -19
  35. package/dist/components/BaseTabs.vue.d.ts +6 -5
  36. package/dist/components/BatchProgressList.vue.d.ts +2 -2
  37. package/dist/components/ChartContainer.vue.d.ts +4 -2
  38. package/dist/components/ChemicalFormula.vue.d.ts +2 -2
  39. package/dist/components/CollapsibleCard.vue.d.ts +3 -3
  40. package/dist/components/ComponentBindingRenderer.vue.d.ts +2 -3
  41. package/dist/components/ConcentrationInput.vue.d.ts +2 -2
  42. package/dist/components/ConfirmDialog.vue.d.ts +8 -7
  43. package/dist/components/DataFrame.vue.d.ts +32 -74
  44. package/dist/components/DatePicker.vue.d.ts +24 -2
  45. package/dist/components/DoseCalculator.vue.d.ts +1 -1
  46. package/dist/components/DoseCalculatorVolumeField.vue.d.ts +1 -1
  47. package/dist/components/EmptyState.vue.d.ts +3 -2
  48. package/dist/components/ExperimentPopover.vue.d.ts +18 -0
  49. package/dist/components/ExperimentSelectorModal.vue.d.ts +3 -7
  50. package/dist/components/FilePicker.vue.d.ts +1 -1
  51. package/dist/components/FileUploader.vue.d.ts +2 -2
  52. package/dist/components/FormBuilder.vue.d.ts +17 -74
  53. package/dist/components/FormulaInput.vue.d.ts +2 -2
  54. package/dist/components/GeneratedPluginView.vue.d.ts +1 -1
  55. package/dist/components/GeneratedResultRenderer.vue.d.ts +5 -1
  56. package/dist/components/{StatusIndicator.vue.d.ts → InstrumentStatusPanels.vue.d.ts} +8 -9
  57. package/dist/components/JobsStatusTray.vue.d.ts +2 -9
  58. package/dist/components/LoadingSpinner.vue.d.ts +3 -3
  59. package/dist/components/MoleculeInput.vue.d.ts +2 -2
  60. package/dist/components/NumberInput.vue.d.ts +19 -5
  61. package/dist/components/PlateEditor.vue.d.ts +11 -61
  62. package/dist/components/PlotlyChart.vue.d.ts +2 -2
  63. package/dist/components/PluginIcon.vue.d.ts +5 -1
  64. package/dist/components/PluginWorkspaceView.controls.d.ts +2 -9
  65. package/dist/components/PluginWorkspaceView.navigation.d.ts +1 -7
  66. package/dist/components/PluginWorkspaceView.props.d.ts +18 -137
  67. package/dist/components/PluginWorkspaceView.shell.d.ts +2 -10
  68. package/dist/components/PluginWorkspaceView.vue.d.ts +14 -84
  69. package/dist/components/PresenceAvatars.vue.d.ts +31 -0
  70. package/dist/components/ProgressBar.vue.d.ts +3 -2
  71. package/dist/components/ProtocolStep.presentation.d.ts +0 -1
  72. package/dist/components/SampleHierarchyTree.vue.d.ts +3 -3
  73. package/dist/components/SampleSelector.vue.d.ts +8 -8
  74. package/dist/components/ScheduleCalendar.vue.d.ts +1 -1
  75. package/dist/components/ScientificNumber.vue.d.ts +1 -1
  76. package/dist/components/SecretInput.vue.d.ts +2 -2
  77. package/dist/components/SegmentedControl.vue.d.ts +2 -2
  78. package/dist/components/SequenceInput.vue.d.ts +2 -2
  79. package/dist/components/SequenceProgressBar.vue.d.ts +3 -0
  80. package/dist/components/SettingsModal.vue.d.ts +12 -20
  81. package/dist/components/SmartGroup.types.d.ts +0 -1
  82. package/dist/components/SmartGroupFieldRecipe.vue.d.ts +1 -1
  83. package/dist/components/StaleFormBanner.vue.d.ts +20 -0
  84. package/dist/components/StepWizard.vue.d.ts +3 -0
  85. package/dist/components/TagsInput.vue.d.ts +4 -3
  86. package/dist/components/TimeRangeInput.vue.d.ts +2 -2
  87. package/dist/components/VersionConflictDialog.vue.d.ts +24 -0
  88. package/dist/components/WellPlate.geometry.d.ts +0 -6
  89. package/dist/components/WellPlate.rendering.d.ts +0 -2
  90. package/dist/components/WellPlate.vue.d.ts +7 -52
  91. package/dist/components/index.d.ts +0 -90
  92. package/dist/components/{AutoGroupModal.adapter.d.ts → internal/AutoGroupModalInternal.adapter.d.ts} +6 -6
  93. package/dist/components/{AutoGroupModal.vue.d.ts → internal/AutoGroupModalInternal.vue.d.ts} +6 -6
  94. package/dist/components/{BaseToggle.vue.d.ts → internal/CheckboxSwitchInternal.vue.d.ts} +2 -2
  95. package/dist/components/{MultiSelect.vue.d.ts → internal/DatePickerDateInternal.vue.d.ts} +11 -9
  96. package/dist/components/{DateTimePicker.vue.d.ts → internal/DatePickerDateTimeInternal.vue.d.ts} +2 -2
  97. package/dist/components/{TimePicker.vue.d.ts → internal/DatePickerTimeInternal.vue.d.ts} +4 -4
  98. package/dist/components/internal/FilePickerListInternal.vue.d.ts +2 -2
  99. package/dist/components/internal/FormSchemaInternal.vue.d.ts +95 -0
  100. package/dist/components/{UnitInput.vue.d.ts → internal/NumberUnitInputInternal.vue.d.ts} +6 -14
  101. package/dist/components/internal/PlateEditorBindingInternal.vue.d.ts +3 -2
  102. package/dist/components/internal/ResourcePickerListInternal.vue.d.ts +5 -10
  103. package/dist/components/internal/SelectMultipleInternal.vue.d.ts +27 -0
  104. package/dist/components/{SearchableSelect.vue.d.ts → internal/SelectSearchableInternal.vue.d.ts} +5 -2
  105. package/dist/components/internal/WorkspaceShellInternal.vue.d.ts +1 -15
  106. package/dist/components/internal/WorkspaceSidebarInternal.vue.d.ts +4 -4
  107. package/dist/{composables → components/internal}/autoGroup/classKey.d.ts +1 -1
  108. package/dist/{composables → components/internal}/autoGroup/classify.d.ts +1 -1
  109. package/dist/{composables → components/internal}/autoGroup/columns.d.ts +1 -1
  110. package/dist/{composables → components/internal}/autoGroup/compose.d.ts +1 -1
  111. package/dist/{composables → components/internal}/autoGroup/cooccurrence.d.ts +1 -1
  112. package/dist/{composables → components/internal}/autoGroup/csv-shim.d.ts +1 -1
  113. package/dist/{composables → components/internal}/autoGroup/fingerprint.d.ts +1 -1
  114. package/dist/{composables → components/internal}/autoGroup/template.d.ts +1 -1
  115. package/dist/{composables → components/internal}/autoGroup/tokenLength.d.ts +1 -1
  116. package/dist/components/internal/generatedJobsApi.d.ts +1 -1
  117. package/dist/{composables → components/internal}/useAutoGroup.d.ts +9 -18
  118. package/dist/composables/componentSpecs.d.ts +41 -0
  119. package/dist/composables/controlComponentBindings.d.ts +6 -0
  120. package/dist/composables/controlSchemaAdapters.d.ts +28 -2
  121. package/dist/composables/controlSchemaDoseDesign.d.ts +1 -1
  122. package/dist/composables/controlSchemaModel.d.ts +1 -1
  123. package/dist/composables/controlSchemaTypes.d.ts +35 -23
  124. package/dist/composables/{usePluginClient.d.ts → createClient.d.ts} +22 -49
  125. package/dist/composables/{useEventStream.d.ts → eventStream.d.ts} +2 -2
  126. package/dist/composables/experiment-utils.d.ts +1 -6
  127. package/dist/composables/index.d.ts +7 -59
  128. package/dist/composables/platformContextHelpers.d.ts +0 -11
  129. package/dist/composables/pluginEndpointBuilder.d.ts +2 -2
  130. package/dist/composables/pluginIdentity.d.ts +24 -0
  131. package/dist/composables/pluginWorkspaceModel.d.ts +16 -99
  132. package/dist/composables/useApi.d.ts +1 -3
  133. package/dist/composables/useAppExperiment.d.ts +9 -1
  134. package/dist/composables/{useAnalysisArtifacts.d.ts → useArtifacts.d.ts} +6 -6
  135. package/dist/composables/useCalendarGrid.d.ts +1 -1
  136. package/dist/composables/useExperiment.d.ts +30 -0
  137. package/dist/composables/useExperimentSelector.d.ts +6 -2
  138. package/dist/composables/useFilePicker.d.ts +2 -2
  139. package/dist/composables/useJobCenter.d.ts +63 -0
  140. package/dist/composables/{useGeneratedAnalysis.d.ts → useJobsEndpoint.d.ts} +22 -23
  141. package/dist/composables/useMenuKeyboard.d.ts +1 -1
  142. package/dist/composables/usePlatform.d.ts +64 -0
  143. package/dist/composables/usePluginWorkspace.d.ts +6 -11
  144. package/dist/composables/usePresence.d.ts +41 -0
  145. package/dist/composables/useRackEditor.d.ts +2 -2
  146. package/dist/composables/useRealtime.d.ts +71 -0
  147. package/dist/composables/{useRequestSyncState.d.ts → useRequest.d.ts} +12 -17
  148. package/dist/composables/useToast.d.ts +7 -5
  149. package/dist/composables/useVersionedSave.d.ts +76 -0
  150. package/dist/controlSchemaModel-B8CTXagP.js +95 -0
  151. package/dist/controlSchemaModel-B8CTXagP.js.map +1 -0
  152. package/dist/data-CgILxDLW.js +3865 -0
  153. package/dist/data-CgILxDLW.js.map +1 -0
  154. package/dist/data.d.ts +32 -0
  155. package/dist/data.js +10 -0
  156. package/dist/deprecatedRootExports.d.ts +191 -0
  157. package/dist/experiment-43OJtH7R.js +673 -0
  158. package/dist/experiment-43OJtH7R.js.map +1 -0
  159. package/dist/experimentStatus-Cqp6qNrR.js +60 -0
  160. package/dist/experimentStatus-Cqp6qNrR.js.map +1 -0
  161. package/dist/host.d.ts +10 -0
  162. package/dist/host.js +26 -0
  163. package/dist/host.js.map +1 -0
  164. package/dist/index.d.ts +1 -12
  165. package/dist/index.js +65 -277
  166. package/dist/index.js.map +1 -1
  167. package/dist/install-CsPFJSx3.js +669 -0
  168. package/dist/install-CsPFJSx3.js.map +1 -0
  169. package/dist/install.d.ts +2 -1
  170. package/dist/install.js +1 -21
  171. package/dist/instrument.d.ts +0 -6
  172. package/dist/lab-MHzp-_J8.js +7494 -0
  173. package/dist/lab-MHzp-_J8.js.map +1 -0
  174. package/dist/lab.d.ts +42 -0
  175. package/dist/lab.js +5 -0
  176. package/dist/permissions.d.ts +0 -4
  177. package/dist/permissions.js +1 -20
  178. package/dist/permissions.js.map +1 -1
  179. package/dist/records-B6gpM_3e.js +3268 -0
  180. package/dist/records-B6gpM_3e.js.map +1 -0
  181. package/dist/runtime-8bs8EogX.js +1491 -0
  182. package/dist/runtime-8bs8EogX.js.map +1 -0
  183. package/dist/runtime.d.ts +25 -0
  184. package/dist/runtime.js +8 -0
  185. package/dist/shell-CywENwBT.js +197 -0
  186. package/dist/shell-CywENwBT.js.map +1 -0
  187. package/dist/shell.d.ts +16 -0
  188. package/dist/shell.js +8 -0
  189. package/dist/stores/auth.d.ts +13 -35
  190. package/dist/stores/experiment.d.ts +4 -0
  191. package/dist/stores/index.js +2 -2
  192. package/dist/styles.css +12161 -15036
  193. package/dist/types/analysisArtifactTypes.d.ts +1 -1
  194. package/dist/types/auth.d.ts +0 -8
  195. package/dist/types/componentLabTypes.d.ts +98 -34
  196. package/dist/types/componentWorkflowTypes.d.ts +2 -27
  197. package/dist/types/components.d.ts +145 -74
  198. package/dist/types/form-builder.d.ts +4 -0
  199. package/dist/types/generated/platformContext.d.ts +53 -0
  200. package/dist/types/generated-ui.d.ts +6 -2
  201. package/dist/types/index.d.ts +4 -5
  202. package/dist/types/instrument.d.ts +41 -0
  203. package/dist/types/platform.d.ts +20 -58
  204. package/dist/useDebouncedWatch-BPwyl6eS.js +73 -0
  205. package/dist/useDebouncedWatch-BPwyl6eS.js.map +1 -0
  206. package/dist/{experiment-utils-DTANyVKV.js → useDropdownState-8yWMu-7_.js} +127 -144
  207. package/dist/useDropdownState-8yWMu-7_.js.map +1 -0
  208. package/dist/useExpansionSet-CvoNMZJi.js +68 -0
  209. package/dist/useExpansionSet-CvoNMZJi.js.map +1 -0
  210. package/dist/useExperimentSamples-DHnxKFAF.js +366 -0
  211. package/dist/useExperimentSamples-DHnxKFAF.js.map +1 -0
  212. package/dist/useListReorder-BitdUhxn.js +5294 -0
  213. package/dist/useListReorder-BitdUhxn.js.map +1 -0
  214. package/dist/useRackEditor-DiwCt77M.js +5930 -0
  215. package/dist/useRackEditor-DiwCt77M.js.map +1 -0
  216. package/dist/useRealtime-C3iy9QkU.js +699 -0
  217. package/dist/useRealtime-C3iy9QkU.js.map +1 -0
  218. package/dist/useRequest-D506eHi8.js +244 -0
  219. package/dist/useRequest-D506eHi8.js.map +1 -0
  220. package/dist/utils/color.d.ts +0 -5
  221. package/dist/{composables/useDoseCalculator.d.ts → utils/dose.d.ts} +10 -13
  222. package/dist/utils/experimentStatus.d.ts +9 -0
  223. package/dist/{composables/useChemicalFormula.d.ts → utils/formula.d.ts} +3 -6
  224. package/dist/utils/integrationHost.d.ts +18 -0
  225. package/dist/utils/plotlyTemplate.d.ts +2 -0
  226. package/dist/utils/pluginSecrets.d.ts +12 -12
  227. package/dist/utils/presenceAvatars.d.ts +30 -0
  228. package/dist/utils/records.d.ts +0 -2
  229. package/dist/{composables/useTimeUtils.d.ts → utils/time.d.ts} +7 -18
  230. package/package.json +20 -17
  231. package/src/__tests__/components/ActionMenu.test.ts +0 -13
  232. package/src/__tests__/components/AlertBox.test.ts +1 -1
  233. package/src/__tests__/components/AppSidebar.test.ts +119 -167
  234. package/src/__tests__/components/AppToastContainer.test.ts +2 -2
  235. package/src/__tests__/components/AppTopBar.test.ts +230 -176
  236. package/src/__tests__/components/AppTopBarPillNav.test.ts +35 -0
  237. package/src/__tests__/components/ArtifactSaveDialog.test.ts +83 -3
  238. package/src/__tests__/components/ArtifactSelectorModal.test.ts +6 -4
  239. package/src/__tests__/components/AuditTrail.test.ts +1 -1
  240. package/src/__tests__/components/AutoGroupModal.adapter.test.ts +1 -1
  241. package/src/__tests__/components/AutoGroupModal.anatomy.test.ts +2 -2
  242. package/src/__tests__/components/AutoGroupModal.wiring.test.ts +2 -2
  243. package/src/__tests__/components/BaseButton.test.ts +51 -0
  244. package/src/__tests__/components/{BaseToggle.test.ts → BaseCheckbox.switch.test.ts} +8 -6
  245. package/src/__tests__/components/BaseInput.test.ts +13 -34
  246. package/src/__tests__/components/BaseModal.test.ts +6 -6
  247. package/src/__tests__/components/BasePill.test.ts +33 -39
  248. package/src/__tests__/components/BaseSelect.multiple.test.ts +118 -0
  249. package/src/__tests__/components/{SearchableSelect.test.ts → BaseSelect.searchable.test.ts} +19 -9
  250. package/src/__tests__/components/BaseSelect.test.ts +11 -0
  251. package/src/__tests__/components/BaseTabs.test.ts +13 -13
  252. package/src/__tests__/components/BatchProgressList.test.ts +16 -0
  253. package/src/__tests__/components/CalendarGridPanel.test.ts +2 -2
  254. package/src/__tests__/components/ChartContainer.test.ts +11 -0
  255. package/src/__tests__/components/ChemicalFormula.test.ts +6 -3
  256. package/src/__tests__/components/CollapsibleCard.test.ts +1 -1
  257. package/src/__tests__/components/ComponentBindingRenderer.test.ts +25 -73
  258. package/src/__tests__/components/ConcentrationInput.test.ts +3 -3
  259. package/src/__tests__/components/ConfirmDialog.test.ts +23 -0
  260. package/src/__tests__/components/DataFrame.test.ts +140 -142
  261. package/src/__tests__/components/DataStates.test.ts +6 -22
  262. package/src/__tests__/components/{DateTimePicker.test.ts → DatePicker.datetime.test.ts} +15 -7
  263. package/src/__tests__/components/DatePicker.test.ts +21 -0
  264. package/src/__tests__/components/{TimePicker.test.ts → DatePicker.time.test.ts} +20 -19
  265. package/src/__tests__/components/DoseCalculator.test.ts +12 -7
  266. package/src/__tests__/components/DoseCalculatorVolumeField.test.ts +6 -6
  267. package/src/__tests__/components/EmptyState.test.ts +1 -1
  268. package/src/__tests__/components/ExperimentPopover.test.ts +125 -16
  269. package/src/__tests__/components/ExperimentSelectorModal.test.ts +134 -28
  270. package/src/__tests__/components/FormBuilder.test.ts +49 -167
  271. package/src/__tests__/components/FormSchemaInternal.test.ts +91 -0
  272. package/src/__tests__/components/GeneratedPathInput.test.ts +18 -13
  273. package/src/__tests__/components/GeneratedPluginView.test.ts +60 -25
  274. package/src/__tests__/components/GeneratedResultRenderer.test.ts +6 -4
  275. package/src/__tests__/components/InstrumentStateBadge.test.ts +4 -4
  276. package/src/__tests__/components/InstrumentStatusPanels.test.ts +79 -0
  277. package/src/__tests__/components/JobsStatusTray.test.ts +4 -4
  278. package/src/__tests__/components/NumberInput.test.ts +28 -0
  279. package/src/__tests__/components/{UnitInput.test.ts → NumberInput.units.test.ts} +6 -6
  280. package/src/__tests__/components/PlateEditor.test.ts +108 -108
  281. package/src/__tests__/components/PlateEditorBindingInternal.test.ts +13 -13
  282. package/src/__tests__/components/PlotlyChart.test.ts +1 -1
  283. package/src/__tests__/components/PluginIcon.test.ts +9 -4
  284. package/src/__tests__/components/PluginWorkspaceView.controls.test.ts +16 -29
  285. package/src/__tests__/components/PluginWorkspaceView.internal.test.ts +28 -34
  286. package/src/__tests__/components/PluginWorkspaceView.navigation.test.ts +4 -19
  287. package/src/__tests__/components/PluginWorkspaceView.shell.test.ts +1 -6
  288. package/src/__tests__/components/PluginWorkspaceView.test.ts +183 -155
  289. package/src/__tests__/components/PresenceAvatars.test.ts +90 -0
  290. package/src/__tests__/components/ProtocolStep.presentation.test.ts +1 -3
  291. package/src/__tests__/components/ProtocolStepEditor.test.ts +10 -11
  292. package/src/__tests__/components/ProtocolStepParameterField.test.ts +8 -7
  293. package/src/__tests__/components/ResourcePickerListInternal.test.ts +2 -22
  294. package/src/__tests__/components/RetiredStyles.test.ts +0 -18
  295. package/src/__tests__/components/SampleSelector.test.ts +30 -25
  296. package/src/__tests__/components/SecretInput.test.ts +14 -19
  297. package/src/__tests__/components/SequenceProgressBar.test.ts +12 -0
  298. package/src/__tests__/components/SettingsModal.test.ts +76 -84
  299. package/src/__tests__/components/StaleFormBanner.test.ts +48 -0
  300. package/src/__tests__/components/StepWizard.test.ts +11 -0
  301. package/src/__tests__/components/ThemeToggle.test.ts +1 -1
  302. package/src/__tests__/components/WellPlate.decoration.test.ts +20 -11
  303. package/src/__tests__/components/WellPlate.interaction.test.ts +6 -7
  304. package/src/__tests__/components/WellPlate.keyboard.test.ts +2 -2
  305. package/src/__tests__/components/deprecationTags.test.ts +90 -0
  306. package/src/__tests__/composables/analysisArtifactTarget.test.ts +1 -12
  307. package/src/__tests__/composables/autoGroup/classKey.test.ts +1 -1
  308. package/src/__tests__/composables/autoGroup/classify.test.ts +1 -1
  309. package/src/__tests__/composables/autoGroup/columns.test.ts +1 -1
  310. package/src/__tests__/composables/autoGroup/compose.test.ts +1 -1
  311. package/src/__tests__/composables/autoGroup/cooccurrence.test.ts +1 -1
  312. package/src/__tests__/composables/autoGroup/fieldEdits.test.ts +1 -1
  313. package/src/__tests__/composables/autoGroup/fingerprint.test.ts +1 -1
  314. package/src/__tests__/composables/autoGroup/golden.test.ts +1 -1
  315. package/src/__tests__/composables/autoGroup/groupByOrder.test.ts +1 -1
  316. package/src/__tests__/composables/autoGroup/groupTree.test.ts +1 -1
  317. package/src/__tests__/composables/autoGroup/integration.test.ts +1 -1
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  1010. package/src/templates/templateAdapterTypes.ts +0 -58
  1011. package/src/templates/templateControlSchemas.ts +0 -320
  1012. package/src/templates/templateCreateOptions.ts +0 -208
  1013. package/src/templates/templateEnvelopes.ts +0 -145
  1014. package/src/templates/templatePackCollectionBuilder.ts +0 -24
  1015. package/src/templates/templatePresetCollectionBuilder.ts +0 -141
  1016. package/src/templates/templateQpcrTypes.ts +0 -48
  1017. package/src/templates/templateValidators.ts +0 -426
  1018. package/src/templates/timeCourseAdapters.ts +0 -77
  1019. package/src/templates/timeCourseBuilder.ts +0 -65
  1020. package/src/templates/types.ts +0 -493
  1021. package/src/templates/wellPlateScreenCollectionBuilder.ts +0 -37
  1022. package/src/templates/westernBlotAssayCollectionBuilder.ts +0 -69
  1023. package/src/utils/rack.ts +0 -225
  1024. /package/dist/__tests__/components/{AppAvatarMenu.test.d.ts → BaseButton.test.d.ts} +0 -0
  1025. /package/dist/__tests__/components/{AppTopBar.navigation.test.d.ts → BaseCheckbox.switch.test.d.ts} +0 -0
  1026. /package/dist/__tests__/components/{AppTopBarPresence.test.d.ts → BaseSelect.multiple.test.d.ts} +0 -0
  1027. /package/dist/__tests__/components/{BaseToggle.test.d.ts → BaseSelect.searchable.test.d.ts} +0 -0
  1028. /package/dist/__tests__/components/{BioTemplateExperimentWorkspaceView.test.d.ts → ConfirmDialog.test.d.ts} +0 -0
  1029. /package/dist/__tests__/components/{BioTemplatePackWorkspaceView.test.d.ts → DatePicker.datetime.test.d.ts} +0 -0
  1030. /package/dist/__tests__/components/{BioTemplatePresetWorkspaceView.test.d.ts → DatePicker.time.test.d.ts} +0 -0
  1031. /package/dist/__tests__/components/{BioTemplateRenderer.test.d.ts → FormSchemaInternal.test.d.ts} +0 -0
  1032. /package/dist/__tests__/components/{ControlWorkspaceView.test.d.ts → InstrumentStatusPanels.test.d.ts} +0 -0
  1033. /package/dist/__tests__/components/{DateTimePicker.test.d.ts → NumberInput.units.test.d.ts} +0 -0
  1034. /package/dist/__tests__/components/{DoseDesignWorkspaceView.test.d.ts → PresenceAvatars.test.d.ts} +0 -0
  1035. /package/dist/__tests__/components/{ExperimentTimeline.test.d.ts → StaleFormBanner.test.d.ts} +0 -0
  1036. /package/dist/__tests__/components/{FitPanel.test.d.ts → deprecationTags.test.d.ts} +0 -0
  1037. /package/dist/__tests__/{components/GroupAssigner.test.d.ts → composables/createClient.test.d.ts} +0 -0
  1038. /package/dist/__tests__/{components/MobileSupportGate.test.d.ts → composables/eventStream.test.d.ts} +0 -0
  1039. /package/dist/__tests__/{components/MultiSelect.test.d.ts → composables/useArtifacts.test.d.ts} +0 -0
  1040. /package/dist/__tests__/{components/ReagentList.presentation.test.d.ts → composables/useExperiment.test.d.ts} +0 -0
  1041. /package/dist/__tests__/{components/ReagentList.test.d.ts → composables/useJobCenter.test.d.ts} +0 -0
  1042. /package/dist/__tests__/{components/SampleLegend.test.d.ts → composables/useJobsEndpoint.test.d.ts} +0 -0
  1043. /package/dist/__tests__/{components/SearchableSelect.test.d.ts → composables/usePlatform.test.d.ts} +0 -0
  1044. /package/dist/__tests__/{components/SmartGroupModal.test.d.ts → composables/usePresence.test.d.ts} +0 -0
  1045. /package/dist/__tests__/{components/TimePicker.test.d.ts → composables/useRealtime.test.d.ts} +0 -0
  1046. /package/dist/__tests__/{components/UnitInput.test.d.ts → composables/useRequest.test.d.ts} +0 -0
  1047. /package/dist/__tests__/{components/WellPlate.sampleTypeIndicator.test.d.ts → composables/useVersionedSave.test.d.ts} +0 -0
  1048. /package/dist/__tests__/{components/iconButtonIconSizing.test.d.ts → utils/formula.test.d.ts} +0 -0
  1049. /package/dist/__tests__/{composables/useAnalysisArtifacts.test.d.ts → utils/time.test.d.ts} +0 -0
  1050. /package/dist/components/{FormActions.vue.d.ts → internal/FormActionsInternal.vue.d.ts} +0 -0
  1051. /package/dist/{composables → components/internal}/autoGroup/colors.d.ts +0 -0
  1052. /package/dist/{composables → components/internal}/autoGroup/index.d.ts +0 -0
  1053. /package/dist/{composables → components/internal}/autoGroup/tokenize.d.ts +0 -0
  1054. /package/src/{composables → components/internal}/autoGroup/colors.ts +0 -0
  1055. /package/src/{composables → components/internal}/autoGroup/tokenize.ts +0 -0
  1056. /package/src/{composables → components/internal}/autoGroup/vocab.json +0 -0
@@ -1,17 +0,0 @@
1
- import { BioTemplateEnvelope, TemplateCollection, TemplateCollectionEnvelope, TemplateId } from './types';
2
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
3
- export declare const TEMPLATE_COLLECTION_KEY = "templates";
4
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
5
- export declare function createTemplateEnvelope<TData>(templateId: TemplateId, data: TData, metadata?: Record<string, unknown>, templateVersion?: string): BioTemplateEnvelope<TData>;
6
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
7
- export declare function createTemplateCollection(templates: Array<BioTemplateEnvelope<unknown>>, metadata?: Record<string, unknown>): TemplateCollectionEnvelope;
8
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
9
- export declare function extractTemplateCollection(value: unknown): TemplateCollection;
10
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
11
- export declare function ensureTemplateFromCollection<TTemplate extends BioTemplateEnvelope<unknown>>(value: unknown, templateId: TemplateId | string): TTemplate;
12
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
13
- export declare function assertTemplateEnvelope<TData>(value: unknown, templateId: TemplateId | string): asserts value is BioTemplateEnvelope<TData>;
14
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
15
- export declare function ensureTemplateEnvelope<TTemplate extends BioTemplateEnvelope<unknown>>(value: unknown, templateId: TemplateId | string): TTemplate;
16
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
17
- export declare function getTemplateData<TData>(template: BioTemplateEnvelope<TData> | TData, templateId?: TemplateId | string): TData;
@@ -1,3 +0,0 @@
1
- import { CreateBioTemplatePackCollectionOptions, TemplateCollectionEnvelope, TemplatePackId } from './types';
2
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
3
- export declare function createBioTemplatePackCollection(name: TemplatePackId | string, options?: CreateBioTemplatePackCollectionOptions): TemplateCollectionEnvelope;
@@ -1,20 +0,0 @@
1
- import { BioTemplateControlValues } from './builderPresetControls';
2
- import { CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateLcmsBatchCollectionOptions, CreateQpcrExpressionCollectionOptions, CreateTargetedMetabolomicsCollectionOptions, CreateWellPlateScreenCollectionOptions, CreateWesternBlotAssayCollectionOptions, TemplateCollectionEnvelope, TemplatePresetId } from './types';
3
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
4
- export declare function createBioTemplatePresetCollection(name: 'wellplate-screen', options?: CreateWellPlateScreenCollectionOptions): TemplateCollectionEnvelope;
5
- export declare function createBioTemplatePresetCollection(name: 'qpcr-expression', options?: CreateQpcrExpressionCollectionOptions): TemplateCollectionEnvelope;
6
- export declare function createBioTemplatePresetCollection(name: 'lcms-batch', options?: CreateLcmsBatchCollectionOptions): TemplateCollectionEnvelope;
7
- export declare function createBioTemplatePresetCollection(name: 'targeted-metabolomics', options?: CreateTargetedMetabolomicsCollectionOptions): TemplateCollectionEnvelope;
8
- export declare function createBioTemplatePresetCollection(name: 'elisa-assay', options?: CreateElisaAssayCollectionOptions): TemplateCollectionEnvelope;
9
- export declare function createBioTemplatePresetCollection(name: 'flow-cytometry-assay', options?: CreateFlowCytometryAssayCollectionOptions): TemplateCollectionEnvelope;
10
- export declare function createBioTemplatePresetCollection(name: 'western-blot-assay', options?: CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
11
- export declare function createBioTemplatePresetCollection(name: string, options?: CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateTargetedMetabolomicsCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
12
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
13
- export declare function createBioTemplatePresetCollectionFromControls(name: 'wellplate-screen', values: BioTemplateControlValues): TemplateCollectionEnvelope;
14
- export declare function createBioTemplatePresetCollectionFromControls(name: 'qpcr-expression', values: BioTemplateControlValues): TemplateCollectionEnvelope;
15
- export declare function createBioTemplatePresetCollectionFromControls(name: 'lcms-batch', values: BioTemplateControlValues): TemplateCollectionEnvelope;
16
- export declare function createBioTemplatePresetCollectionFromControls(name: 'targeted-metabolomics', values: BioTemplateControlValues): TemplateCollectionEnvelope;
17
- export declare function createBioTemplatePresetCollectionFromControls(name: 'elisa-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;
18
- export declare function createBioTemplatePresetCollectionFromControls(name: 'flow-cytometry-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;
19
- export declare function createBioTemplatePresetCollectionFromControls(name: 'western-blot-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;
20
- export declare function createBioTemplatePresetCollectionFromControls(name: TemplatePresetId | string, values: BioTemplateControlValues): TemplateCollectionEnvelope;
@@ -1,42 +0,0 @@
1
- import { WellPlateFormat } from '../types';
2
- import { BioTemplateEnvelope } from './types';
3
- export type QpcrChemistry = 'sybr' | 'taqman' | 'probe' | 'evagreen' | 'other';
4
- export type QpcrControlKind = 'sample' | 'no-template' | 'no-rt' | 'positive' | 'standard' | 'calibrator';
5
- export interface QpcrSample {
6
- sampleId: string;
7
- name?: string;
8
- group?: string;
9
- metadata?: Record<string, unknown>;
10
- }
11
- export interface QpcrTarget {
12
- id: string;
13
- name: string;
14
- assayId?: string;
15
- reporter?: string;
16
- quencher?: string;
17
- ampliconBp?: number;
18
- metadata?: Record<string, unknown>;
19
- }
20
- export interface QpcrReaction {
21
- id: string;
22
- wellId: string;
23
- sampleId?: string;
24
- targetId: string;
25
- replicate: number;
26
- controlKind: QpcrControlKind;
27
- cq?: number | null;
28
- quantity?: number | null;
29
- flags: string[];
30
- metadata?: Record<string, unknown>;
31
- }
32
- export interface QpcrPlateTemplateData {
33
- plateId: string;
34
- format: WellPlateFormat;
35
- samples: QpcrSample[];
36
- targets: QpcrTarget[];
37
- reactions: QpcrReaction[];
38
- instrument?: string;
39
- chemistry: QpcrChemistry;
40
- metadata: Record<string, unknown>;
41
- }
42
- export type QpcrPlateTemplate = BioTemplateEnvelope<QpcrPlateTemplateData>;
@@ -1,25 +0,0 @@
1
- import { AssayMatrixTemplateData, CalibrationCurveTemplateData, DoseResponseTemplateData, FlowCytometryPanelTemplateData, InstrumentRunTemplateData, PlateMapTemplateData, ProtocolStepsTemplateData, QpcrPlateTemplateData, ReagentListTemplateData, SamplePrepTemplateData, SampleSheetTemplateData, TimeCourseTemplateData } from './types';
2
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
3
- export declare function validatePlateMapData(data: PlateMapTemplateData): void;
4
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
5
- export declare function validateSampleSheetData(data: SampleSheetTemplateData): void;
6
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
7
- export declare function validateSamplePrepData(data: SamplePrepTemplateData): void;
8
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
9
- export declare function validateDoseResponseData(data: DoseResponseTemplateData): void;
10
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
11
- export declare function validateCalibrationCurveData(data: CalibrationCurveTemplateData): void;
12
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
13
- export declare function validateTimeCourseData(data: TimeCourseTemplateData): void;
14
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
15
- export declare function validateProtocolStepsData(data: ProtocolStepsTemplateData): void;
16
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
17
- export declare function validateAssayMatrixData(data: AssayMatrixTemplateData): void;
18
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
19
- export declare function validateReagentListData(data: ReagentListTemplateData): void;
20
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
21
- export declare function validateFlowCytometryPanelData(data: FlowCytometryPanelTemplateData): void;
22
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
23
- export declare function validateInstrumentRunData(data: InstrumentRunTemplateData): void;
24
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
25
- export declare function validateQpcrPlateData(data: QpcrPlateTemplateData): void;
@@ -1,9 +0,0 @@
1
- import { TimeCourseColumnsAdapterResult, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData } from './types';
2
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
3
- export declare function toTimeCourseRows(template: TimeCourseTemplate | TimeCourseTemplateData): TimeCourseRowsAdapterResult;
4
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
5
- export declare function toTimeCourseColumns(): TimeCourseColumnsAdapterResult;
6
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
7
- export declare function toTimeCourseDataFrame(template: TimeCourseTemplate | TimeCourseTemplateData): TimeCourseDataFrameAdapterResult;
8
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
9
- export declare function toTimeCourseSteps(template: TimeCourseTemplate | TimeCourseTemplateData): TimeCourseStepsAdapterResult;
@@ -1,3 +0,0 @@
1
- import { CreateTimeCourseTemplateOptions, TimeCourseTemplate } from './types';
2
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
3
- export declare function createTimeCourseTemplate(options: CreateTimeCourseTemplateOptions): TimeCourseTemplate;
@@ -1,304 +0,0 @@
1
- import { PlateMap, ProtocolStep, Reagent, SampleType, Well } from '../types';
2
- import { QpcrPlateTemplate } from './templateQpcrTypes';
3
- export type TemplateKind = 'experiment-design';
4
- export type TemplateId = 'plate-map' | 'sample-sheet' | 'sample-prep' | 'dose-response' | 'calibration-curve' | 'time-course' | 'protocol-steps' | 'assay-matrix' | 'reagent-list' | 'flow-cytometry-panel' | 'instrument-run' | 'qpcr-plate';
5
- export type TemplatePresetId = 'wellplate-screen' | 'qpcr-expression' | 'lcms-batch' | 'targeted-metabolomics' | 'elisa-assay' | 'flow-cytometry-assay' | 'western-blot-assay';
6
- export type TemplatePackId = 'cell-culture-screen' | 'omics-assay' | 'longitudinal-study' | 'molecular-assay';
7
- export interface BioTemplateEnvelope<TData = Record<string, unknown>> {
8
- template_id: TemplateId | string;
9
- template_version: string;
10
- kind: TemplateKind | string;
11
- data: TData;
12
- metadata: Record<string, unknown>;
13
- }
14
- export type TemplateCollection = Record<string, BioTemplateEnvelope<unknown>>;
15
- export interface TemplateCollectionEnvelope {
16
- templates: TemplateCollection;
17
- metadata?: Record<string, unknown>;
18
- }
19
- export type TemplateWell = Well;
20
- export type TemplatePlateMap = PlateMap;
21
- export type TemplateSample = SampleType;
22
- export interface PlateMapTemplateData {
23
- plates: TemplatePlateMap[];
24
- samples: TemplateSample[];
25
- activePlateId?: string;
26
- selectedWells?: string[];
27
- activeSampleId?: string;
28
- }
29
- export type PlateMapTemplate = BioTemplateEnvelope<PlateMapTemplateData>;
30
- export type SampleColumnType = 'string' | 'number' | 'integer' | 'boolean' | 'date' | 'category' | 'unknown';
31
- export interface SampleColumn {
32
- id: string;
33
- label: string;
34
- type: SampleColumnType;
35
- required: boolean;
36
- groupable: boolean;
37
- }
38
- export interface SampleRecord {
39
- sampleId: string;
40
- name?: string;
41
- group?: string;
42
- batch?: string;
43
- replicate?: number | string;
44
- plateId?: string;
45
- wellId?: string;
46
- metadata?: Record<string, unknown>;
47
- }
48
- export interface SampleGroupDefinition {
49
- name: string;
50
- color: string;
51
- samples: string[];
52
- }
53
- export interface SampleSheetTemplateData {
54
- samples: SampleRecord[];
55
- columns: SampleColumn[];
56
- groups: SampleGroupDefinition[];
57
- }
58
- export type SampleSheetTemplate = BioTemplateEnvelope<SampleSheetTemplateData>;
59
- export type SamplePrepStepType = 'extraction' | 'dilution' | 'normalization' | 'transfer' | 'incubation' | 'centrifugation' | 'cleanup' | 'digestion' | 'labeling' | 'other';
60
- export type SamplePrepStatus = 'planned' | 'in-progress' | 'completed' | 'failed' | 'skipped';
61
- export interface SamplePrepStep {
62
- id: string;
63
- order: number;
64
- type: SamplePrepStepType;
65
- name: string;
66
- sourceSampleId?: string;
67
- sourcePlateId?: string;
68
- sourceWellId?: string;
69
- destinationSampleId?: string;
70
- destinationPlateId?: string;
71
- destinationWellId?: string;
72
- reagentId?: string;
73
- inputVolume?: number;
74
- outputVolume?: number;
75
- volumeUnit: string;
76
- durationMin?: number;
77
- status: SamplePrepStatus;
78
- metadata?: Record<string, unknown>;
79
- }
80
- export interface SamplePrepTemplateData {
81
- protocolName: string;
82
- steps: SamplePrepStep[];
83
- metadata: Record<string, unknown>;
84
- }
85
- export type SamplePrepTemplate = BioTemplateEnvelope<SamplePrepTemplateData>;
86
- export type SamplePrepStepInput = Partial<SamplePrepStep> & {
87
- name?: string;
88
- sourceSampleId?: string;
89
- };
90
- export interface CompoundDoseSeries {
91
- id: string;
92
- name: string;
93
- concentrations: number[];
94
- metadata?: Record<string, unknown>;
95
- }
96
- export type ControlRole = 'vehicle' | 'positive' | 'negative' | 'blank' | 'baseline' | 'other';
97
- export interface ControlDefinition {
98
- id: string;
99
- name: string;
100
- role: ControlRole;
101
- vehicle?: string;
102
- metadata?: Record<string, unknown>;
103
- }
104
- export interface DoseResponseTemplateData {
105
- compounds: CompoundDoseSeries[];
106
- unit: string;
107
- replicates: number;
108
- controls: ControlDefinition[];
109
- layout?: PlateMapTemplateData;
110
- metadata: Record<string, unknown>;
111
- }
112
- export type DoseResponseTemplate = BioTemplateEnvelope<DoseResponseTemplateData>;
113
- export type CalibrationModel = 'linear' | 'linear-weighted-1-x' | 'linear-weighted-1-x2' | 'quadratic' | 'four-parameter-logistic';
114
- export type CalibrationPointRole = 'blank' | 'standard' | 'qc' | 'unknown';
115
- export type CalibrationPointStatus = 'planned' | 'accepted' | 'rejected' | 'warning';
116
- export interface CalibrationAcceptance {
117
- minRSquared: number;
118
- standardTolerancePercent: number;
119
- qcTolerancePercent: number;
120
- requireBlank: boolean;
121
- metadata?: Record<string, unknown>;
122
- }
123
- export interface CalibrationPoint {
124
- id: string;
125
- order: number;
126
- role: CalibrationPointRole;
127
- level: string;
128
- concentration: number;
129
- unit: string;
130
- expectedResponse?: number;
131
- response?: number;
132
- replicate: number;
133
- include: boolean;
134
- status: CalibrationPointStatus;
135
- metadata?: Record<string, unknown>;
136
- }
137
- export interface CalibrationCurveTemplateData {
138
- analyte: string;
139
- model: CalibrationModel;
140
- xUnit: string;
141
- responseUnit: string;
142
- points: CalibrationPoint[];
143
- acceptance: CalibrationAcceptance;
144
- metadata: Record<string, unknown>;
145
- }
146
- export type CalibrationCurveTemplate = BioTemplateEnvelope<CalibrationCurveTemplateData>;
147
- export type CalibrationAcceptanceInput = Partial<CalibrationAcceptance>;
148
- export type CalibrationPointInput = Partial<CalibrationPoint> & {
149
- concentration?: number;
150
- level?: string;
151
- };
152
- export type TimeUnit = 'second' | 'minute' | 'hour' | 'day' | 'week';
153
- export interface TimePoint {
154
- id: string;
155
- label: string;
156
- value: number;
157
- unit: TimeUnit;
158
- metadata?: Record<string, unknown>;
159
- }
160
- export interface TimeCourseCondition {
161
- id: string;
162
- name: string;
163
- color?: string;
164
- description?: string;
165
- metadata?: Record<string, unknown>;
166
- }
167
- export interface TimeCourseSample {
168
- sampleId: string;
169
- conditionId: string;
170
- timepointId: string;
171
- replicate: number;
172
- metadata?: Record<string, unknown>;
173
- }
174
- export interface TimeCourseTemplateData {
175
- timepoints: TimePoint[];
176
- conditions: TimeCourseCondition[];
177
- samples: TimeCourseSample[];
178
- metadata: Record<string, unknown>;
179
- }
180
- export type TimeCourseTemplate = BioTemplateEnvelope<TimeCourseTemplateData>;
181
- export type AssayFeatureType = 'metabolite' | 'protein' | 'gene' | 'cell' | 'compound' | 'readout' | 'other';
182
- export interface AssaySample {
183
- sampleId: string;
184
- name?: string;
185
- group?: string;
186
- metadata?: Record<string, unknown>;
187
- }
188
- export interface AssayFeature {
189
- id: string;
190
- name: string;
191
- type: AssayFeatureType;
192
- unit?: string;
193
- metadata?: Record<string, unknown>;
194
- }
195
- export interface AssayMeasurement {
196
- sampleId: string;
197
- featureId: string;
198
- value?: number | null;
199
- metadata?: Record<string, unknown>;
200
- }
201
- export interface AssayMatrixTemplateData {
202
- samples: AssaySample[];
203
- features: AssayFeature[];
204
- measurements: AssayMeasurement[];
205
- metadata: Record<string, unknown>;
206
- }
207
- export type AssayMatrixTemplate = BioTemplateEnvelope<AssayMatrixTemplateData>;
208
- export type ProtocolStepRecord = ProtocolStep & {
209
- metadata?: Record<string, unknown>;
210
- };
211
- export interface ProtocolStepsTemplateData {
212
- steps: ProtocolStepRecord[];
213
- metadata: Record<string, unknown>;
214
- }
215
- export type ProtocolStepsTemplate = BioTemplateEnvelope<ProtocolStepsTemplateData>;
216
- export type ReagentKind = 'compound' | 'antibody' | 'primer' | 'enzyme' | 'buffer' | 'media' | 'kit' | 'reagent' | 'other';
217
- export type ReagentTemplateInput = Omit<Reagent, 'expiryDate'> & {
218
- expiryDate?: Date | string | null;
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- kind?: ReagentKind;
220
- concentration?: string;
221
- metadata?: Record<string, unknown>;
222
- };
223
- export interface ReagentRecord extends Omit<Reagent, 'expiryDate'> {
224
- expiryDate?: string;
225
- kind?: ReagentKind;
226
- concentration?: string;
227
- metadata?: Record<string, unknown>;
228
- }
229
- export interface ReagentListTemplateData {
230
- reagents: ReagentRecord[];
231
- metadata: Record<string, unknown>;
232
- }
233
- export type ReagentListTemplate = BioTemplateEnvelope<ReagentListTemplateData>;
234
- export type FlowMarkerPurpose = 'phenotype' | 'viability' | 'activation' | 'sorting' | 'control' | 'other';
235
- export type FlowControlKind = 'unstained' | 'single-stain' | 'fmo' | 'isotype' | 'viability' | 'beads' | 'other';
236
- export interface FlowPanelMarker {
237
- id: string;
238
- marker: string;
239
- fluorophore: string;
240
- detector?: string;
241
- clone?: string;
242
- reagentId?: string;
243
- purpose: FlowMarkerPurpose;
244
- compensationRequired: boolean;
245
- metadata?: Record<string, unknown>;
246
- }
247
- export interface FlowPanelControl {
248
- id: string;
249
- name: string;
250
- kind: FlowControlKind;
251
- markerId?: string;
252
- required: boolean;
253
- metadata?: Record<string, unknown>;
254
- }
255
- export interface FlowCytometryPanelTemplateData {
256
- markers: FlowPanelMarker[];
257
- controls: FlowPanelControl[];
258
- instrument?: string;
259
- metadata: Record<string, unknown>;
260
- }
261
- export type FlowCytometryPanelTemplate = BioTemplateEnvelope<FlowCytometryPanelTemplateData>;
262
- export type InstrumentRunItemKind = 'sample' | 'blank' | 'qc' | 'standard' | 'calibration' | 'wash' | 'other';
263
- export type InstrumentRunStatus = 'planned' | 'queued' | 'running' | 'completed' | 'failed' | 'skipped';
264
- export interface InstrumentMethod {
265
- id: string;
266
- name: string;
267
- instrument?: string;
268
- acquisitionMode?: string;
269
- metadata?: Record<string, unknown>;
270
- }
271
- export interface InstrumentRunItem {
272
- id: string;
273
- order: number;
274
- kind: InstrumentRunItemKind;
275
- sampleId?: string;
276
- name?: string;
277
- methodId: string;
278
- vial?: string;
279
- plateId?: string;
280
- wellId?: string;
281
- injectionVolume?: number;
282
- expectedDurationMin?: number;
283
- status: InstrumentRunStatus;
284
- metadata?: Record<string, unknown>;
285
- }
286
- export interface InstrumentRunTemplateData {
287
- runId: string;
288
- instrument?: string;
289
- methods: InstrumentMethod[];
290
- items: InstrumentRunItem[];
291
- metadata: Record<string, unknown>;
292
- }
293
- export type InstrumentRunTemplate = BioTemplateEnvelope<InstrumentRunTemplateData>;
294
- export type InstrumentMethodInput = Partial<InstrumentMethod> & {
295
- name?: string;
296
- };
297
- export type InstrumentRunItemInput = Partial<InstrumentRunItem> & {
298
- name?: string;
299
- sampleId?: string;
300
- };
301
- export type DataFrameTemplate = SampleSheetTemplate | SamplePrepTemplate | CalibrationCurveTemplate | TimeCourseTemplate | ProtocolStepsTemplate | AssayMatrixTemplate | ReagentListTemplate | FlowCytometryPanelTemplate | InstrumentRunTemplate | QpcrPlateTemplate;
302
- export type { QpcrChemistry, QpcrControlKind, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrReaction, QpcrSample, QpcrTarget, } from './templateQpcrTypes';
303
- export type { CreateAssayMatrixTemplateOptions, CreateBioTemplatePackCollectionOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreateLcmsBatchCollectionOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSamplePrepTemplateOptions, CreateSampleSheetTemplateOptions, CreateTargetedMetabolomicsCollectionOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, CreateWesternBlotAssayCollectionOptions, } from './templateCreateOptions';
304
- export type { AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, DataFrameAdapterResult, DoseConditionsAdapterResult, FlowPanelColumnsAdapterResult, FlowPanelDataFrameAdapterResult, FlowPanelRowsAdapterResult, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, PlateMapEditorAdapterResult, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepsAdapterResult, QpcrColumnsAdapterResult, QpcrDataFrameAdapterResult, QpcrRowsAdapterResult, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentListItemsAdapterResult, ReagentRowsAdapterResult, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SampleRowsAdapterResult, TemplateDataFrameAdapterResult, TimeCourseColumnsAdapterResult, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseStepsAdapterResult, WellMapAdapterResult, } from './templateAdapterTypes';
@@ -1,3 +0,0 @@
1
- import { CreateWellPlateScreenCollectionOptions, TemplateCollectionEnvelope } from './types';
2
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
3
- export declare function createWellPlateScreenCollection(options?: CreateWellPlateScreenCollectionOptions): TemplateCollectionEnvelope;
@@ -1,3 +0,0 @@
1
- import { CreateWesternBlotAssayCollectionOptions, TemplateCollectionEnvelope } from './types';
2
- /** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
3
- export declare function createWesternBlotAssayCollection(options?: CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;