@morscherlab/mint-sdk 1.2.0-beta.8 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (402) hide show
  1. package/README.md +60 -0
  2. package/dist/{ExperimentPopover-CfOdh5Rm.js → ExperimentPopover-CJdNlCZb.js} +24 -15
  3. package/dist/ExperimentPopover-CJdNlCZb.js.map +1 -0
  4. package/dist/{ExperimentSelectorModal-DvIagrxY.js → ExperimentSelectorModal-DCXmwKNS.js} +5 -5
  5. package/dist/ExperimentSelectorModal-DCXmwKNS.js.map +1 -0
  6. package/dist/{SettingsModal-W3TYfnP9.js → SettingsModal-BYR20I4c.js} +5 -5
  7. package/dist/SettingsModal-BYR20I4c.js.map +1 -0
  8. package/dist/{EmptyState-NBqf2_8z.js → Skeleton-BAF3CKY7.js} +111 -93
  9. package/dist/Skeleton-BAF3CKY7.js.map +1 -0
  10. package/dist/__tests__/components/DataStates.test.d.ts +1 -0
  11. package/dist/__tests__/components/ExperimentTimeline.test.d.ts +1 -0
  12. package/dist/__tests__/components/FileBrowserModal.test.d.ts +1 -0
  13. package/dist/__tests__/components/FilePicker.state.test.d.ts +1 -0
  14. package/dist/__tests__/components/FilePicker.test.d.ts +1 -0
  15. package/dist/__tests__/components/PlotlyChart.test.d.ts +1 -0
  16. package/dist/__tests__/components/iconButtonIconSizing.test.d.ts +1 -0
  17. package/dist/__tests__/composables/useFileBrowser.test.d.ts +1 -0
  18. package/dist/__tests__/composables/useListReorder.test.d.ts +1 -0
  19. package/dist/__tests__/composables/usePlatformFilePickerAdapter.test.d.ts +1 -0
  20. package/dist/__tests__/styles/cssTokens.test.d.ts +1 -0
  21. package/dist/apiErrors.d.ts +26 -0
  22. package/dist/components/ActionMenu.vue.d.ts +1 -1
  23. package/dist/components/AppPluginSwitcher.vue.d.ts +2 -0
  24. package/dist/components/AuditTrail.vue.d.ts +13 -0
  25. package/dist/components/BaseInput.vue.d.ts +1 -1
  26. package/dist/components/BaseSelect.vue.d.ts +1 -1
  27. package/dist/components/BaseTextarea.vue.d.ts +1 -1
  28. package/dist/components/BatchProgressList.vue.d.ts +17 -0
  29. package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +2 -2
  30. package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +2 -2
  31. package/dist/components/ConcentrationInput.vue.d.ts +1 -1
  32. package/dist/components/DataFrame.vue.d.ts +14 -2
  33. package/dist/components/DatePicker.vue.d.ts +2 -2
  34. package/dist/components/DateTimePicker.vue.d.ts +3 -1
  35. package/dist/components/ExperimentDataViewer.vue.d.ts +26 -1
  36. package/dist/components/ExperimentPopover.vue.d.ts +1 -0
  37. package/dist/components/ExperimentTimeline.vue.d.ts +29 -1
  38. package/dist/components/FileBrowserModal.vue.d.ts +99 -0
  39. package/dist/components/FilePicker.vue.d.ts +32 -0
  40. package/dist/components/FileUploader.vue.d.ts +5 -2
  41. package/dist/components/FormulaInput.vue.d.ts +1 -1
  42. package/dist/components/GeneratedPlotlyResult.vue.d.ts +1 -3
  43. package/dist/components/LcmsSequenceTable.vue.d.ts +29 -1
  44. package/dist/components/MobileSupportGate.vue.d.ts +1 -1
  45. package/dist/components/MoleculeInput.vue.d.ts +1 -1
  46. package/dist/components/NumberInput.vue.d.ts +1 -1
  47. package/dist/components/PlotlyChart.vue.d.ts +59 -0
  48. package/dist/components/ProgressBar.vue.d.ts +1 -1
  49. package/dist/components/ProtocolStepEditor.vue.d.ts +1 -0
  50. package/dist/components/ReagentList.vue.d.ts +29 -1
  51. package/dist/components/ResourceCard.vue.d.ts +1 -1
  52. package/dist/components/SampleHierarchyTree.vue.d.ts +29 -1
  53. package/dist/components/SampleSelector.drag.d.ts +13 -0
  54. package/dist/components/SampleSelector.tree.d.ts +2 -0
  55. package/dist/components/SampleSelector.vue.d.ts +34 -1
  56. package/dist/components/ScheduleCalendar.vue.d.ts +20 -0
  57. package/dist/components/SecretInput.vue.d.ts +1 -1
  58. package/dist/components/SequenceInput.vue.d.ts +1 -1
  59. package/dist/components/SmartGroupFieldRecipe.vue.d.ts +1 -0
  60. package/dist/components/StatusIndicator.vue.d.ts +1 -1
  61. package/dist/components/TagsInput.vue.d.ts +1 -1
  62. package/dist/components/TimePicker.vue.d.ts +2 -1
  63. package/dist/components/TimeRangeInput.vue.d.ts +1 -1
  64. package/dist/components/UnitInput.vue.d.ts +1 -1
  65. package/dist/components/WellPlate.geometry.d.ts +15 -0
  66. package/dist/components/WellPlate.interaction.d.ts +13 -0
  67. package/dist/components/WellPlate.vue.d.ts +30 -1
  68. package/dist/components/fileBrowserPresentation.d.ts +10 -0
  69. package/dist/components/index.d.ts +4 -0
  70. package/dist/components/index.js +8 -8
  71. package/dist/components/internal/AppTopBarPageSelectorInternal.vue.d.ts +2 -0
  72. package/dist/components/internal/DataStateInternal.vue.d.ts +43 -0
  73. package/dist/components/internal/FileBrowserDialogInternal.vue.d.ts +34 -0
  74. package/dist/components/internal/FileBrowserListingInternal.vue.d.ts +25 -0
  75. package/dist/components/internal/FileBrowserToolbarInternal.vue.d.ts +26 -0
  76. package/dist/components/internal/FilePickerPreviewInternal.vue.d.ts +18 -0
  77. package/dist/components/internal/FilePickerTreeInternal.vue.d.ts +31 -0
  78. package/dist/{components-B80gV0P6.js → components-DIum5hkx.js} +5415 -2753
  79. package/dist/components-DIum5hkx.js.map +1 -0
  80. package/dist/composables/controlSchemaTypes.d.ts +34 -0
  81. package/dist/composables/filePicker/localFiles.d.ts +3 -0
  82. package/dist/composables/filePicker/usePickerNavigation.d.ts +96 -0
  83. package/dist/composables/filePicker/usePickerSelection.d.ts +31 -0
  84. package/dist/composables/filePicker/validation.d.ts +5 -0
  85. package/dist/composables/index.d.ts +3 -0
  86. package/dist/composables/index.js +10 -10
  87. package/dist/composables/useApi.d.ts +14 -7
  88. package/dist/composables/useDropdownState.d.ts +18 -2
  89. package/dist/composables/useEventStream.d.ts +9 -0
  90. package/dist/composables/useFileBrowser.d.ts +55 -0
  91. package/dist/composables/useFilePicker.d.ts +189 -0
  92. package/dist/composables/useListReorder.d.ts +90 -0
  93. package/dist/composables/useMenuKeyboard.d.ts +2 -2
  94. package/dist/composables/usePlatformFilePickerAdapter.d.ts +11 -0
  95. package/dist/composables/usePluginConfig.d.ts +3 -1
  96. package/dist/composables/useRequestSyncState.d.ts +42 -2
  97. package/dist/composables/useScheduleDrag.d.ts +1 -0
  98. package/dist/{composables-C8mmD5ta.js → composables-mFXsTA4g.js} +307 -74
  99. package/dist/composables-mFXsTA4g.js.map +1 -0
  100. package/dist/{useApi-CDBq6z23.js → errors-BLuqMee5.js} +178 -16
  101. package/dist/errors-BLuqMee5.js.map +1 -0
  102. package/dist/{experiment-Y9Iz7KYi.js → experiment-CVDRAnqp.js} +3 -8
  103. package/dist/experiment-CVDRAnqp.js.map +1 -0
  104. package/dist/{experiment-utils-DV3DrvE_.js → experiment-utils-CV2Wza3z.js} +1 -1
  105. package/dist/experiment-utils-CV2Wza3z.js.map +1 -0
  106. package/dist/index.d.ts +1 -0
  107. package/dist/index.js +15 -15
  108. package/dist/install.js +2 -7
  109. package/dist/install.js.map +1 -1
  110. package/dist/permissions.d.ts +42 -1
  111. package/dist/permissions.js +20 -10
  112. package/dist/permissions.js.map +1 -1
  113. package/dist/stores/index.d.ts +1 -1
  114. package/dist/stores/index.js +3 -3
  115. package/dist/stores/settings.d.ts +31 -1
  116. package/dist/styles.css +15162 -32475
  117. package/dist/templates/index.js +2 -4
  118. package/dist/{templates-CK72aKO1.js → templates-CmGfmBRA.js} +291 -85
  119. package/dist/templates-CmGfmBRA.js.map +1 -0
  120. package/dist/types/fileBrowserTypes.d.ts +77 -0
  121. package/dist/types/filePicker.d.ts +77 -0
  122. package/dist/types/index.d.ts +2 -0
  123. package/dist/{useControlSchema-_OVhavKq.js → useControlSchema-DldpxNOP.js} +234 -1121
  124. package/dist/useControlSchema-DldpxNOP.js.map +1 -0
  125. package/dist/{useDropdownState-D5G4UvWd.js → useDropdownState-C7hRiVQf.js} +22 -6
  126. package/dist/useDropdownState-C7hRiVQf.js.map +1 -0
  127. package/dist/{useExperimentSelector-DSEckf_g.js → useExperimentSelector-CEcIaueJ.js} +4 -4
  128. package/dist/{useExperimentSelector-DSEckf_g.js.map → useExperimentSelector-CEcIaueJ.js.map} +1 -1
  129. package/dist/{useFormBuilder-Bd714C7y.js → useFormBuilder-z5L_dUIy.js} +2 -2
  130. package/dist/{useFormBuilder-Bd714C7y.js.map → useFormBuilder-z5L_dUIy.js.map} +1 -1
  131. package/dist/utils/color.d.ts +13 -0
  132. package/dist/utils/errors.d.ts +9 -0
  133. package/dist/{useProtocolTemplates-Dq5Pzwyd.js → validation-uwoJGEb6.js} +231 -158
  134. package/dist/validation-uwoJGEb6.js.map +1 -0
  135. package/package.json +1 -1
  136. package/src/__tests__/apiErrors.test.ts +81 -0
  137. package/src/__tests__/components/ActionMenu.test.ts +94 -0
  138. package/src/__tests__/components/DataFrame.test.ts +183 -11
  139. package/src/__tests__/components/DataStates.test.ts +176 -0
  140. package/src/__tests__/components/DatePicker.test.ts +76 -0
  141. package/src/__tests__/components/DateTimePicker.test.ts +36 -0
  142. package/src/__tests__/components/ExperimentPopover.test.ts +30 -0
  143. package/src/__tests__/components/ExperimentTimeline.test.ts +63 -0
  144. package/src/__tests__/components/FileBrowserModal.test.ts +460 -0
  145. package/src/__tests__/components/FilePicker.state.test.ts +287 -0
  146. package/src/__tests__/components/FilePicker.test.ts +487 -0
  147. package/src/__tests__/components/GeneratedPlotlyResult.test.ts +52 -5
  148. package/src/__tests__/components/GroupAssigner.test.ts +53 -0
  149. package/src/__tests__/components/LcmsSequenceTable.test.ts +22 -0
  150. package/src/__tests__/components/PlotlyChart.test.ts +305 -0
  151. package/src/__tests__/components/RackEditor.test.ts +35 -0
  152. package/src/__tests__/components/ReagentList.test.ts +64 -2
  153. package/src/__tests__/components/RetiredStyles.test.ts +31 -0
  154. package/src/__tests__/components/SampleSelector.drag.test.ts +51 -1
  155. package/src/__tests__/components/ScheduleCalendar.test.ts +63 -0
  156. package/src/__tests__/components/SegmentedControl.test.ts +107 -0
  157. package/src/__tests__/components/TimePicker.test.ts +61 -0
  158. package/src/__tests__/components/WellPlate.interaction.test.ts +59 -0
  159. package/src/__tests__/components/iconButtonIconSizing.test.ts +18 -0
  160. package/src/__tests__/composables/useApi.test.ts +92 -9
  161. package/src/__tests__/composables/useDropdownState.test.ts +58 -1
  162. package/src/__tests__/composables/useFileBrowser.test.ts +305 -0
  163. package/src/__tests__/composables/useGeneratedAnalysis.test.ts +7 -2
  164. package/src/__tests__/composables/useListReorder.test.ts +145 -0
  165. package/src/__tests__/composables/usePlatformFilePickerAdapter.test.ts +67 -0
  166. package/src/__tests__/composables/usePluginClient.test.ts +3 -0
  167. package/src/__tests__/composables/useRequestSyncState.test.ts +140 -0
  168. package/src/__tests__/stores/settings.test.ts +71 -1
  169. package/src/__tests__/styles/cssTokens.test.ts +131 -0
  170. package/src/__tests__/utils/permissions.test.ts +68 -0
  171. package/src/apiErrors.ts +85 -0
  172. package/src/components/ActionMenu.vue +45 -88
  173. package/src/components/AlertBox.vue +0 -4
  174. package/src/components/AppAvatarMenu.vue +2 -14
  175. package/src/components/AppLayout.vue +0 -4
  176. package/src/components/AppPluginSwitcher.story.vue +87 -0
  177. package/src/components/AppPluginSwitcher.vue +2 -5
  178. package/src/components/AppSidebar.vue +0 -4
  179. package/src/components/AppToastContainer.vue +6 -8
  180. package/src/components/AppTopBar.vue +0 -4
  181. package/src/components/ArtifactSaveDialog.vue +0 -4
  182. package/src/components/ArtifactSelectorModal.vue +0 -4
  183. package/src/components/AuditTrail.story.vue +18 -0
  184. package/src/components/AuditTrail.vue +27 -7
  185. package/src/components/AutoGroupModal.vue +0 -4
  186. package/src/components/Avatar.vue +0 -4
  187. package/src/components/BaseButton.vue +0 -4
  188. package/src/components/BaseCheckbox.vue +0 -4
  189. package/src/components/BaseInput.vue +0 -4
  190. package/src/components/BaseModal.vue +0 -4
  191. package/src/components/BasePill.vue +0 -4
  192. package/src/components/BaseRadioGroup.vue +0 -4
  193. package/src/components/BaseSelect.vue +0 -4
  194. package/src/components/BaseSlider.vue +0 -4
  195. package/src/components/BaseTabs.vue +0 -4
  196. package/src/components/BaseTextarea.vue +0 -4
  197. package/src/components/BaseToggle.vue +0 -4
  198. package/src/components/BatchProgressList.story.vue +18 -0
  199. package/src/components/BatchProgressList.vue +32 -4
  200. package/src/components/Breadcrumb.vue +0 -4
  201. package/src/components/Calendar.vue +0 -4
  202. package/src/components/ChartContainer.story.vue +1 -1
  203. package/src/components/ChartContainer.vue +0 -4
  204. package/src/components/ChemicalFormula.vue +0 -4
  205. package/src/components/CollapsibleCard.vue +0 -4
  206. package/src/components/ColorSlider.vue +0 -4
  207. package/src/components/ConcentrationInput.vue +0 -4
  208. package/src/components/ConfirmDialog.vue +0 -4
  209. package/src/components/DataFrame.story.vue +14 -0
  210. package/src/components/DataFrame.vue +97 -23
  211. package/src/components/DatePicker.vue +73 -27
  212. package/src/components/DateTimePicker.vue +45 -17
  213. package/src/components/Divider.vue +0 -4
  214. package/src/components/DoseCalculator.vue +0 -4
  215. package/src/components/DropdownButton.vue +2 -14
  216. package/src/components/EmptyState.vue +0 -4
  217. package/src/components/ExperimentCodeBadge.vue +0 -4
  218. package/src/components/ExperimentDataViewer.story.vue +3 -0
  219. package/src/components/ExperimentDataViewer.vue +33 -13
  220. package/src/components/ExperimentPopover.vue +12 -7
  221. package/src/components/ExperimentSelectorModal.vue +0 -4
  222. package/src/components/ExperimentTimeline.story.vue +18 -0
  223. package/src/components/ExperimentTimeline.vue +81 -75
  224. package/src/components/FileBrowserModal.story.vue +203 -0
  225. package/src/components/FileBrowserModal.vue +384 -0
  226. package/src/components/FilePicker.story.vue +44 -0
  227. package/src/components/FilePicker.vue +284 -0
  228. package/src/components/FileUploader.vue +32 -18
  229. package/src/components/FitPanel.vue +0 -4
  230. package/src/components/FormActions.story.vue +96 -0
  231. package/src/components/FormActions.vue +0 -4
  232. package/src/components/FormBuilder.vue +0 -4
  233. package/src/components/FormField.vue +0 -4
  234. package/src/components/FormulaInput.vue +0 -4
  235. package/src/components/GeneratedPathInput.story.vue +68 -0
  236. package/src/components/GeneratedPlotlyResult.story.vue +96 -0
  237. package/src/components/GeneratedPlotlyResult.vue +34 -69
  238. package/src/components/GeneratedPluginView.story.vue +145 -0
  239. package/src/components/GeneratedPluginView.vue +10 -10
  240. package/src/components/GeneratedResultRenderer.story.vue +117 -0
  241. package/src/components/GeneratedResultRenderer.vue +4 -9
  242. package/src/components/GroupAssigner.vue +67 -5
  243. package/src/components/IconButton.vue +0 -4
  244. package/src/components/InstrumentAlertLog.vue +0 -4
  245. package/src/components/InstrumentStateBadge.vue +0 -4
  246. package/src/components/InstrumentStatusCard.vue +0 -4
  247. package/src/components/JobsStatusTray.vue +0 -4
  248. package/src/components/LcmsSequenceTable.vue +81 -50
  249. package/src/components/LoadingSpinner.vue +0 -4
  250. package/src/components/MobileSupportGate.vue +0 -4
  251. package/src/components/MoleculeInput.vue +0 -4
  252. package/src/components/MultiSelect.vue +0 -4
  253. package/src/components/NumberInput.vue +0 -4
  254. package/src/components/PlateMapEditor.vue +3 -14
  255. package/src/components/PlotlyChart.story.vue +61 -0
  256. package/src/components/PlotlyChart.vue +233 -0
  257. package/src/components/PluginIcon.vue +0 -4
  258. package/src/components/ProgressBar.vue +0 -4
  259. package/src/components/ProtocolStepEditor.vue +2 -4
  260. package/src/components/RackEditor.vue +51 -70
  261. package/src/components/ReagentEditor.vue +0 -4
  262. package/src/components/ReagentList.story.vue +18 -0
  263. package/src/components/ReagentList.vue +127 -82
  264. package/src/components/ResourceCard.vue +0 -4
  265. package/src/components/RuntimeUpdateNotice.story.vue +49 -0
  266. package/src/components/RuntimeUpdateNotice.vue +4 -4
  267. package/src/components/SampleHierarchyTree.story.vue +18 -0
  268. package/src/components/SampleHierarchyTree.vue +32 -9
  269. package/src/components/SampleLegend.vue +2 -8
  270. package/src/components/SampleSelector.drag.ts +51 -0
  271. package/src/components/SampleSelector.story.vue +6 -0
  272. package/src/components/SampleSelector.tree.ts +2 -0
  273. package/src/components/SampleSelector.vue +49 -10
  274. package/src/components/SampleSelectorGroupNode.vue +19 -0
  275. package/src/components/ScheduleCalendar.story.vue +6 -0
  276. package/src/components/ScheduleCalendar.vue +82 -7
  277. package/src/components/ScientificNumber.vue +0 -4
  278. package/src/components/SectionCard.vue +0 -4
  279. package/src/components/SegmentedControl.vue +50 -7
  280. package/src/components/SequenceInput.vue +0 -4
  281. package/src/components/SequenceProgressBar.story.vue +110 -0
  282. package/src/components/SequenceProgressBar.vue +0 -4
  283. package/src/components/SettingsModal.vue +0 -4
  284. package/src/components/Skeleton.vue +0 -4
  285. package/src/components/SmartGroupFieldRecipe.vue +8 -6
  286. package/src/components/SmartGroupManual.vue +0 -4
  287. package/src/components/StatusIndicator.vue +0 -4
  288. package/src/components/StepWizard.vue +0 -4
  289. package/src/components/TagsInput.vue +4 -6
  290. package/src/components/ThemeToggle.vue +0 -4
  291. package/src/components/TimePicker.vue +36 -7
  292. package/src/components/TimeRangeInput.vue +0 -4
  293. package/src/components/Tooltip.story.vue +3 -3
  294. package/src/components/Tooltip.vue +0 -4
  295. package/src/components/UnitInput.vue +0 -4
  296. package/src/components/WellPlate.geometry.ts +60 -1
  297. package/src/components/WellPlate.interaction.ts +44 -0
  298. package/src/components/WellPlate.story.vue +8 -0
  299. package/src/components/WellPlate.vue +53 -7
  300. package/src/components/fileBrowserPresentation.ts +39 -0
  301. package/src/components/index.ts +5 -0
  302. package/src/components/internal/AppTopBarPageSelectorInternal.vue +2 -5
  303. package/src/components/internal/AppTopBarPillNavInternal.vue +0 -4
  304. package/src/components/internal/DataStateInternal.vue +74 -0
  305. package/src/components/internal/FileBrowserDialogInternal.vue +75 -0
  306. package/src/components/internal/FileBrowserListingInternal.vue +197 -0
  307. package/src/components/internal/FileBrowserToolbarInternal.vue +136 -0
  308. package/src/components/internal/FilePickerPreviewInternal.vue +100 -0
  309. package/src/components/internal/FilePickerTreeInternal.vue +238 -0
  310. package/src/components/internal/FormSectionRenderer.vue +0 -4
  311. package/src/components/internal/WellEditPopupInternal.vue +0 -4
  312. package/src/composables/controlSchemaTypes.ts +34 -0
  313. package/src/composables/filePicker/localFiles.ts +58 -0
  314. package/src/composables/filePicker/usePickerNavigation.ts +220 -0
  315. package/src/composables/filePicker/usePickerSelection.ts +259 -0
  316. package/src/composables/filePicker/validation.ts +41 -0
  317. package/src/composables/index.ts +17 -0
  318. package/src/composables/useApi.ts +57 -13
  319. package/src/composables/useDropdownState.ts +35 -5
  320. package/src/composables/useEventStream.ts +14 -2
  321. package/src/composables/useFileBrowser.ts +314 -0
  322. package/src/composables/useFileImport.ts +2 -7
  323. package/src/composables/useFilePicker.ts +366 -0
  324. package/src/composables/useGeneratedAnalysis.ts +18 -26
  325. package/src/composables/useListReorder.story.vue +143 -0
  326. package/src/composables/useListReorder.ts +242 -0
  327. package/src/composables/useMenuKeyboard.ts +2 -2
  328. package/src/composables/useOptimisticMutation.ts +1 -15
  329. package/src/composables/usePlatformFilePickerAdapter.ts +104 -0
  330. package/src/composables/usePluginClient.ts +3 -0
  331. package/src/composables/usePluginConfig.ts +3 -1
  332. package/src/composables/useRackEditor.ts +2 -11
  333. package/src/composables/useRequestSyncState.ts +98 -28
  334. package/src/composables/useResourceCrud.ts +1 -15
  335. package/src/composables/useScheduleDrag.ts +37 -0
  336. package/src/composables/useWellPainting.ts +5 -29
  337. package/src/composables/useWellPlateEditor.ts +1 -11
  338. package/src/index.ts +3 -0
  339. package/src/permissions.ts +48 -9
  340. package/src/stores/experiment.ts +2 -7
  341. package/src/stores/index.ts +9 -1
  342. package/src/stores/settings.ts +93 -1
  343. package/src/styles/components/audit-trail.css +5 -5
  344. package/src/styles/components/batch-progress-list.css +7 -0
  345. package/src/styles/components/color-slider.css +2 -2
  346. package/src/styles/components/data-state.css +30 -0
  347. package/src/styles/components/dataframe.css +29 -35
  348. package/src/styles/components/experiment-data-viewer.css +4 -4
  349. package/src/styles/components/experiment-timeline.css +3 -30
  350. package/src/styles/components/file-browser-modal.css +489 -0
  351. package/src/styles/components/file-picker.css +502 -0
  352. package/src/styles/components/form-builder.css +5 -5
  353. package/src/styles/components/icon-button.css +9 -0
  354. package/src/styles/components/lcms-sequence-table.css +16 -1
  355. package/src/styles/components/multi-select.css +1 -1
  356. package/src/styles/components/reagent-list.css +38 -31
  357. package/src/styles/components/sample-hierarchy-tree.css +5 -19
  358. package/src/styles/components/sample-selector.css +9 -2
  359. package/src/styles/components/schedule-calendar.css +8 -0
  360. package/src/styles/components/scientific-number.css +1 -1
  361. package/src/styles/components/well-plate.css +8 -0
  362. package/src/styles/index.css +11 -0
  363. package/src/styles/variables.css +29 -0
  364. package/src/templates/builderPresetControls.ts +1 -1
  365. package/src/templates/componentPlateHelpers.ts +3 -1
  366. package/src/templates/doseResponseAdapters.ts +2 -13
  367. package/src/templates/elisaAssayCollectionBuilder.ts +2 -2
  368. package/src/templates/plateMapBuilder.ts +2 -2
  369. package/src/templates/qpcrPlateBuilder.ts +1 -1
  370. package/src/templates/templateValidators.ts +1 -1
  371. package/src/templates/timeCourseBuilder.ts +2 -2
  372. package/src/templates/wellPlateScreenCollectionBuilder.ts +2 -2
  373. package/src/types/fileBrowserTypes.ts +85 -0
  374. package/src/types/filePicker.ts +72 -0
  375. package/src/types/index.ts +14 -0
  376. package/src/utils/color.ts +51 -0
  377. package/src/utils/errors.ts +29 -0
  378. package/dist/EmptyState-NBqf2_8z.js.map +0 -1
  379. package/dist/ExperimentPopover-CfOdh5Rm.js.map +0 -1
  380. package/dist/ExperimentSelectorModal-DvIagrxY.js.map +0 -1
  381. package/dist/SettingsModal-W3TYfnP9.js.map +0 -1
  382. package/dist/components-B80gV0P6.js.map +0 -1
  383. package/dist/composables/autoGroupConstants.d.ts +0 -1
  384. package/dist/composables/autoGroupGrouping.d.ts +0 -3
  385. package/dist/composables/useAutoGroupInputSources.d.ts +0 -32
  386. package/dist/composables-C8mmD5ta.js.map +0 -1
  387. package/dist/experiment-Y9Iz7KYi.js.map +0 -1
  388. package/dist/experiment-utils-DV3DrvE_.js.map +0 -1
  389. package/dist/templates/builderDefaults.d.ts +0 -1
  390. package/dist/templates/plateGeometry.d.ts +0 -4
  391. package/dist/templates-CK72aKO1.js.map +0 -1
  392. package/dist/useApi-CDBq6z23.js.map +0 -1
  393. package/dist/useControlSchema-_OVhavKq.js.map +0 -1
  394. package/dist/useDropdownState-D5G4UvWd.js.map +0 -1
  395. package/dist/useProtocolTemplates-Dq5Pzwyd.js.map +0 -1
  396. package/src/__tests__/composables/useAutoGroupInputSources.test.ts +0 -127
  397. package/src/composables/autoGroupConstants.ts +0 -4
  398. package/src/composables/autoGroupGrouping.ts +0 -148
  399. package/src/composables/useAutoGroupInputSources.ts +0 -147
  400. package/src/templates/builderDefaults.ts +0 -11
  401. package/src/templates/plateGeometry.ts +0 -62
  402. /package/dist/__tests__/{composables/useAutoGroupInputSources.test.d.ts → apiErrors.test.d.ts} +0 -0
@@ -0,0 +1,75 @@
1
+ <script setup lang="ts">
2
+ import { onBeforeUnmount, onMounted, shallowRef, watch } from 'vue'
3
+ import type { ModalSize } from '../../types'
4
+ import { useFocusTrap } from '../../composables/useFocusTrap'
5
+ import IconButton from '../IconButton.vue'
6
+
7
+ const props = defineProps<{ open: boolean; label: string; size: ModalSize; variant?: 'picker' }>()
8
+ const emit = defineEmits<{ close: [] }>()
9
+ const containerRef = shallowRef<HTMLElement | null>(null)
10
+ const active = shallowRef(false)
11
+ useFocusTrap({ containerRef, active })
12
+
13
+ // Activate after mounting so an initially open picker traps focus too.
14
+ onMounted(() => {
15
+ active.value = props.open
16
+ })
17
+ watch(
18
+ () => props.open,
19
+ (open) => {
20
+ active.value = open
21
+ },
22
+ )
23
+ watch(
24
+ active,
25
+ (open, _, onCleanup) => {
26
+ if (!open) return
27
+ const overflow = document.body.style.overflow
28
+ document.body.style.overflow = 'hidden'
29
+ onCleanup(() => {
30
+ document.body.style.overflow = overflow
31
+ })
32
+ },
33
+ { flush: 'sync' },
34
+ )
35
+ onBeforeUnmount(() => {
36
+ active.value = false
37
+ })
38
+ </script>
39
+
40
+ <template>
41
+ <Teleport to="body">
42
+ <div v-if="open" class="mint-file-browser-overlay">
43
+ <section
44
+ ref="containerRef"
45
+ class="mint-file-browser-dialog"
46
+ :class="[
47
+ `mint-file-browser-dialog--${size}`,
48
+ variant === 'picker' ? 'mint-picker-dialog' : '',
49
+ ]"
50
+ role="dialog"
51
+ aria-modal="true"
52
+ :aria-label="label"
53
+ tabindex="-1"
54
+ @keydown.esc.stop.prevent="emit('close')"
55
+ >
56
+ <header class="mint-file-browser-dialog__header">
57
+ <slot name="header" />
58
+ <IconButton size="sm" label="Close modal" @click="emit('close')">
59
+ <svg
60
+ viewBox="0 0 24 24"
61
+ fill="none"
62
+ stroke="currentColor"
63
+ stroke-width="2"
64
+ aria-hidden="true"
65
+ >
66
+ <path d="M6 6l12 12M18 6L6 18" />
67
+ </svg>
68
+ </IconButton>
69
+ </header>
70
+ <slot />
71
+ <footer class="mint-file-browser-dialog__footer"><slot name="footer" /></footer>
72
+ </section>
73
+ </div>
74
+ </Teleport>
75
+ </template>
@@ -0,0 +1,197 @@
1
+ <script setup lang="ts">
2
+ import { computed } from 'vue'
3
+ import type { FileEntry, FileSelection } from '../../types/fileBrowserTypes'
4
+ import {
5
+ FILE_BROWSER_ICONS as ICON,
6
+ formatCount,
7
+ formatSize,
8
+ entryType,
9
+ } from '../fileBrowserPresentation'
10
+ import EmptyState from '../EmptyState.vue'
11
+ import BaseButton from '../BaseButton.vue'
12
+ import IconButton from '../IconButton.vue'
13
+ import Skeleton from '../Skeleton.vue'
14
+ const props = defineProps<{
15
+ mountId: string
16
+ entries: FileEntry[]
17
+ selected: FileSelection[]
18
+ loading: boolean
19
+ error?: string | null
20
+ dimNonMatching: boolean
21
+ totalCount: number | null
22
+ matchCount: number | null
23
+ truncated: boolean
24
+ hasMounts: boolean
25
+ hasAvailableMounts: boolean
26
+ search: string
27
+ }>()
28
+ const emit = defineEmits<{ toggle: [entry: FileEntry]; open: [entry: FileEntry]; refresh: [] }>()
29
+ const emptyTitle = computed(() =>
30
+ !props.hasMounts
31
+ ? 'No server mounts configured'
32
+ : !props.hasAvailableMounts
33
+ ? 'Server mounts are offline'
34
+ : props.search
35
+ ? 'No matching files or folders'
36
+ : 'This folder is empty',
37
+ )
38
+ const emptyDescription = computed(() =>
39
+ !props.hasMounts
40
+ ? 'Ask your administrator to configure a read-only data mount.'
41
+ : !props.hasAvailableMounts
42
+ ? 'Refresh when the data mount is available again.'
43
+ : props.search
44
+ ? 'Try a different search or clear the search field.'
45
+ : 'Choose another folder from the mount list or breadcrumbs.',
46
+ )
47
+ function isSelected(entry: FileEntry) {
48
+ return props.selected.some((item) => item.mount_id === props.mountId && item.path === entry.path)
49
+ }
50
+ function isDimmed(entry: FileEntry) {
51
+ return props.dimNonMatching && entry.matches_type_rules === false
52
+ }
53
+ function entryIcon(entry: FileEntry) {
54
+ return entry.kind === 'directory' ? ICON.folder : ICON.file
55
+ }
56
+ function handleRowClick(entry: FileEntry) {
57
+ if (!props.loading && !props.error && props.mountId && entry.kind === 'directory')
58
+ emit('open', entry)
59
+ }
60
+ function toggleEntry(entry: FileEntry) {
61
+ if (!props.loading && !props.error && props.mountId) emit('toggle', entry)
62
+ }
63
+ function folderNote(entry: FileEntry) {
64
+ if (entry.kind !== 'directory' || !isSelected(entry)) return ''
65
+ return entry.child_count == null
66
+ ? 'whole folder'
67
+ : `whole folder, ${entry.child_count} item${entry.child_count === 1 ? '' : 's'}`
68
+ }
69
+ const statusLine = computed(() => {
70
+ if (props.loading) return 'Loading folder…'
71
+ if (props.error || !props.mountId) return ''
72
+ const total = props.totalCount ?? props.entries.length
73
+ const parts = [`${formatCount(total)} item${total === 1 ? '' : 's'}`]
74
+ if (props.entries.length !== total) parts.push(`${formatCount(props.entries.length)} shown`)
75
+ if (props.matchCount !== null && props.matchCount !== total)
76
+ parts.push(`${formatCount(props.matchCount)} match the type rules`)
77
+ if (props.truncated) parts.push('listing capped')
78
+ return parts.join(' · ')
79
+ })
80
+ </script>
81
+ <template>
82
+ <div class="mint-file-browser__listing" :aria-busy="loading">
83
+ <div class="mint-file-browser__head">
84
+ <span class="mint-file-browser__col-check" />
85
+ <span class="mint-file-browser__col-icon" />
86
+ <span class="mint-file-browser__col-name">Name</span>
87
+ <span class="mint-file-browser__col-size">Size</span>
88
+ <span class="mint-file-browser__col-type">Type</span>
89
+ <span class="mint-file-browser__col-open" />
90
+ </div>
91
+
92
+ <div v-if="loading" class="mint-file-browser__skeleton">
93
+ <div v-for="n in 6" :key="n" class="mint-file-browser__skeleton-row">
94
+ <Skeleton width="60%" height="14px" />
95
+ <Skeleton width="60px" height="10px" />
96
+ </div>
97
+ </div>
98
+
99
+ <div v-else-if="error" class="mint-file-browser__error" role="alert">
100
+ <span>{{ error }}</span>
101
+ <BaseButton
102
+ variant="secondary"
103
+ size="sm"
104
+ class="mint-file-browser__retry"
105
+ aria-label="Retry folder listing"
106
+ @click="emit('refresh')"
107
+ >
108
+ Try again
109
+ </BaseButton>
110
+ </div>
111
+
112
+ <EmptyState
113
+ v-else-if="!entries.length"
114
+ :title="emptyTitle"
115
+ :description="emptyDescription"
116
+ size="sm"
117
+ />
118
+
119
+ <div v-else class="mint-file-browser__rows">
120
+ <div
121
+ v-for="entry in entries"
122
+ :key="entry.path"
123
+ class="mint-file-browser__row"
124
+ :class="{
125
+ 'mint-file-browser__row--selected': isSelected(entry),
126
+ 'mint-file-browser__row--dimmed': isDimmed(entry),
127
+ 'mint-file-browser__row--dir': entry.kind === 'directory',
128
+ }"
129
+ @click="handleRowClick(entry)"
130
+ >
131
+ <input
132
+ class="mint-file-browser__checkbox"
133
+ type="checkbox"
134
+ :checked="isSelected(entry)"
135
+ :title="entry.kind === 'directory' ? 'Select the whole folder' : 'Select this file'"
136
+ :aria-label="
137
+ entry.kind === 'directory'
138
+ ? `Select the whole ${entry.name} folder`
139
+ : `Select ${entry.name}`
140
+ "
141
+ @click.stop
142
+ @change="toggleEntry(entry)"
143
+ />
144
+ <span
145
+ class="mint-file-browser__row-icon"
146
+ :class="`mint-file-browser__row-icon--${entry.kind}`"
147
+ >
148
+ <svg
149
+ class="mint-file-browser__icon"
150
+ viewBox="0 0 24 24"
151
+ fill="none"
152
+ stroke="currentColor"
153
+ stroke-width="1.8"
154
+ stroke-linecap="round"
155
+ stroke-linejoin="round"
156
+ >
157
+ <path :d="entryIcon(entry)" />
158
+ </svg>
159
+ </span>
160
+ <span class="mint-file-browser__name-cell">
161
+ <span class="mint-file-browser__name" :title="entry.name">{{ entry.name }}</span>
162
+ <span v-if="folderNote(entry)" class="mint-file-browser__note-pill">Whole folder</span>
163
+ </span>
164
+ <span class="mint-file-browser__size">{{ formatSize(entry) }}</span>
165
+ <span class="mint-file-browser__type">{{ entryType(entry) }}</span>
166
+ <!-- The chevron is the keyboard route into a folder: the row
167
+ itself is a div, so this button is what Tab can reach. -->
168
+ <IconButton
169
+ v-if="entry.kind === 'directory'"
170
+ size="sm"
171
+ class="mint-file-browser__open"
172
+ :label="`Open ${entry.name}`"
173
+ @click.stop="handleRowClick(entry)"
174
+ >
175
+ <svg
176
+ class="mint-file-browser__icon"
177
+ viewBox="0 0 24 24"
178
+ fill="none"
179
+ stroke="currentColor"
180
+ stroke-width="2.5"
181
+ stroke-linecap="round"
182
+ stroke-linejoin="round"
183
+ >
184
+ <path d="M9 6l6 6-6 6" />
185
+ </svg>
186
+ </IconButton>
187
+ <span v-else class="mint-file-browser__open" aria-hidden="true" />
188
+ </div>
189
+ </div>
190
+
191
+ <div class="mint-file-browser__status" role="status" aria-live="polite">
192
+ <span>{{ statusLine }}</span>
193
+ <div class="mint-file-browser__status-spacer" />
194
+ <span class="mint-file-browser__legend">Read-only · Select paths, not copies</span>
195
+ </div>
196
+ </div>
197
+ </template>
@@ -0,0 +1,136 @@
1
+ <script setup lang="ts">
2
+ import { computed } from 'vue'
3
+ import BaseButton from '../BaseButton.vue'
4
+ import BaseInput from '../BaseInput.vue'
5
+ import IconButton from '../IconButton.vue'
6
+ import type {
7
+ FileBrowserSortKey,
8
+ FilePathCrumb,
9
+ FileBrowserLocation,
10
+ } from '../../types/fileBrowserTypes'
11
+ const props = defineProps<{
12
+ mountId: string
13
+ path: string
14
+ parent: string | null
15
+ breadcrumbs: FilePathCrumb[]
16
+ search: string
17
+ sort: FileBrowserSortKey
18
+ typeRules: string[]
19
+ loading: boolean
20
+ error?: string | null
21
+ }>()
22
+ const emit = defineEmits<{
23
+ navigate: [location: FileBrowserLocation]
24
+ selectFolder: [location: FileBrowserLocation]
25
+ 'update:search': [value: string]
26
+ 'update:sort': [value: FileBrowserSortKey]
27
+ refresh: []
28
+ }>()
29
+ const typeRuleLabel = computed(() => props.typeRules.join(' '))
30
+ function handleBack() {
31
+ if (props.parent !== null && !props.loading && !props.error)
32
+ emit('navigate', { mount_id: props.mountId, path: props.parent })
33
+ }
34
+ function handleCrumb(crumb: FilePathCrumb) {
35
+ emit('navigate', { mount_id: props.mountId, path: crumb.path })
36
+ }
37
+ function cycleSort() {
38
+ const order: FileBrowserSortKey[] = ['name', 'size', 'modified']
39
+ emit('update:sort', order[(order.indexOf(props.sort) + 1) % order.length]!)
40
+ }
41
+ </script>
42
+ <template>
43
+ <div class="mint-file-browser__toolbar">
44
+ <div class="mint-file-browser__pathbar">
45
+ <IconButton
46
+ size="sm"
47
+ class="mint-file-browser__back"
48
+ label="Go to parent folder"
49
+ :disabled="parent === null || loading || !!error"
50
+ @click="handleBack"
51
+ >
52
+ <svg
53
+ viewBox="0 0 24 24"
54
+ fill="none"
55
+ stroke="currentColor"
56
+ stroke-width="2"
57
+ aria-hidden="true"
58
+ >
59
+ <path d="M12 19V5m-6 6 6-6 6 6" />
60
+ </svg>
61
+ </IconButton>
62
+ <nav class="mint-file-browser__crumbs" aria-label="Breadcrumb">
63
+ <template v-for="(crumb, index) in breadcrumbs" :key="crumb.path">
64
+ <span v-if="index" class="mint-file-browser__crumb-sep" aria-hidden="true">/</span>
65
+ <BaseButton
66
+ variant="ghost"
67
+ size="sm"
68
+ class="mint-file-browser__crumb"
69
+ :class="{ 'mint-file-browser__crumb--current': index === breadcrumbs.length - 1 }"
70
+ :aria-current="index === breadcrumbs.length - 1 ? 'location' : undefined"
71
+ @click="handleCrumb(crumb)"
72
+ >{{ crumb.label }}</BaseButton
73
+ >
74
+ </template>
75
+ <span v-if="!breadcrumbs.length" class="mint-file-browser__selection-hint">{{
76
+ path || 'Choose a location'
77
+ }}</span>
78
+ </nav>
79
+ <IconButton
80
+ size="sm"
81
+ label="Refresh folder listing"
82
+ :disabled="loading"
83
+ @click="emit('refresh')"
84
+ >
85
+ <svg
86
+ viewBox="0 0 24 24"
87
+ fill="none"
88
+ stroke="currentColor"
89
+ stroke-width="2"
90
+ aria-hidden="true"
91
+ >
92
+ <path d="M20 7v5h-5M4 17v-5h5M6 8a7 7 0 0 1 12-2l2 3M4 15l2 3a7 7 0 0 0 12-2" />
93
+ </svg>
94
+ </IconButton>
95
+ </div>
96
+ <div class="mint-file-browser__tools">
97
+ <BaseInput
98
+ :model-value="search"
99
+ type="search"
100
+ size="sm"
101
+ class="mint-file-browser__search"
102
+ placeholder="Search this folder…"
103
+ aria-label="Search this folder"
104
+ @update:model-value="emit('update:search', String($event ?? ''))"
105
+ />
106
+ <span v-if="typeRuleLabel" class="mint-file-browser__rules" title="Matching file types">{{
107
+ typeRuleLabel
108
+ }}</span>
109
+ <IconButton
110
+ size="sm"
111
+ class="mint-file-browser__sort"
112
+ :label="`Sorted by ${sort}. Click to change.`"
113
+ @click="cycleSort"
114
+ >
115
+ <svg
116
+ viewBox="0 0 24 24"
117
+ fill="none"
118
+ stroke="currentColor"
119
+ stroke-width="2"
120
+ aria-hidden="true"
121
+ >
122
+ <path d="M4 6h10M4 12h16M4 18h7" />
123
+ </svg>
124
+ </IconButton>
125
+ <BaseButton
126
+ variant="secondary"
127
+ size="sm"
128
+ class="mint-file-browser__select-folder"
129
+ :title="`Select ${path || 'this folder'} itself as the input`"
130
+ :disabled="!mountId || loading || !!error"
131
+ @click="emit('selectFolder', { mount_id: mountId, path })"
132
+ >Select this folder</BaseButton
133
+ >
134
+ </div>
135
+ </div>
136
+ </template>
@@ -0,0 +1,100 @@
1
+ <script setup lang="ts">
2
+ import BaseButton from '../BaseButton.vue'
3
+ import { FILE_BROWSER_ICONS as ICON, formatBytes } from '../fileBrowserPresentation'
4
+ import type { PickerNode, PickerExcluded, PickerSource } from '../../types/filePicker'
5
+ import { pickerReason } from '../../composables/filePicker/validation'
6
+
7
+ defineProps<{
8
+ totalCount?: number | null
9
+ node: PickerNode | null
10
+ source: PickerSource
11
+ exclusions: PickerExcluded[]
12
+ busy: boolean
13
+ error: string
14
+ reviewing: boolean
15
+ }>()
16
+ const emit = defineEmits<{ review: []; retry: [] }>()
17
+ </script>
18
+ <template>
19
+ <aside class="mint-picker__preview" aria-label="Selection preview">
20
+ <div class="mint-picker__preview-heading">{{ reviewing ? 'Skipped files' : 'Preview' }}</div>
21
+ <div v-if="reviewing" class="mint-picker__preview-content">
22
+ <BaseButton variant="ghost" size="sm" @click="emit('review')">Back to preview</BaseButton>
23
+ <div
24
+ v-for="item in exclusions"
25
+ :key="item.path"
26
+ class="mint-picker__exclusion"
27
+ :title="item.path"
28
+ >
29
+ <strong>{{ item.name }}</strong
30
+ ><span>{{ pickerReason(item) }}</span>
31
+ </div>
32
+ </div>
33
+ <div v-else-if="node" class="mint-picker__preview-content">
34
+ <div class="mint-picker__preview-icon">
35
+ <svg
36
+ viewBox="0 0 24 24"
37
+ fill="none"
38
+ stroke="currentColor"
39
+ stroke-width="1.7"
40
+ aria-hidden="true"
41
+ >
42
+ <path :d="node.kind === 'folder' ? ICON.folder : ICON.file" />
43
+ </svg>
44
+ </div>
45
+ <strong class="mint-picker__preview-name">{{ node.name }}</strong>
46
+ <dl class="mint-picker__metadata">
47
+ <div>
48
+ <dt>Location</dt>
49
+ <dd :title="node.parentName || node.path">{{ node.parentName || node.path }}</dd>
50
+ </div>
51
+ <div>
52
+ <dt>Size</dt>
53
+ <dd>{{ node.bytes == null ? 'Not available' : formatBytes(node.bytes) }}</dd>
54
+ </div>
55
+ <div v-if="node.kind === 'folder'">
56
+ <dt>Files</dt>
57
+ <dd>
58
+ {{ node.fileCount ?? 'Not counted yet'
59
+ }}<template v-if="totalCount != null && totalCount !== node.fileCount">
60
+ of {{ totalCount }}</template
61
+ >
62
+ </dd>
63
+ </div>
64
+ <div>
65
+ <dt>Format</dt>
66
+ <dd v-if="node.kind === 'file'">{{ node.format.toUpperCase() || 'Unknown' }}</dd>
67
+ <dd v-else>
68
+ <span v-for="(count, format) in node.formats" :key="format"
69
+ >{{ format.toUpperCase() }} ×{{ count }}<br /></span
70
+ ><span v-if="!node.formats">Not counted yet</span>
71
+ </dd>
72
+ </div>
73
+ <div>
74
+ <dt>Source</dt>
75
+ <dd>
76
+ {{ source === 'localFile' ? 'Local files' : 'Server' }}
77
+ </dd>
78
+ </div>
79
+ </dl>
80
+ <BaseButton
81
+ v-if="exclusions.length"
82
+ variant="ghost"
83
+ size="sm"
84
+ class="mint-picker__skipped"
85
+ @click="emit('review')"
86
+ >{{ exclusions.length }} skipped · Review</BaseButton
87
+ >
88
+ <div v-if="error" class="mint-picker__preview-error" role="alert">
89
+ {{ error
90
+ }}<BaseButton variant="secondary" size="sm" @click="emit('retry')">Try again</BaseButton>
91
+ </div>
92
+ <span v-else class="mint-picker__ready" role="status">{{
93
+ busy ? 'Checking selection…' : '✓ Metadata available'
94
+ }}</span>
95
+ </div>
96
+ <div v-else class="mint-picker__preview-empty">
97
+ Select a file or folder to preview its details.
98
+ </div>
99
+ </aside>
100
+ </template>