@morscherlab/mint-sdk 1.1.9 → 1.1.11

package/dist/__tests__/components/AppTopBarPresence.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/composables/usePresenceHeartbeat.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/components/AutoGroupModal.adapter.d.ts

@@ -1,4 +1,4 @@
-import { AutoGroupResult, ColumnInfo, ColumnRole } from '../types/auto-group';
+import { AutoGroupResult, ClassSchema, ColumnInfo, ColumnRole } from '../types/auto-group';
 import { SampleGroup } from '../types';
 import { FieldRecipeGroup, QcRoute, SmartGroupField } from './SmartGroupFieldRecipe.groups';
 import { ManualSample } from './SmartGroupManual.cohorts';
@@ -22,6 +22,17 @@ export declare function engineFieldsToCards(columns: ColumnInfo[], groupBy: read
     enabled: boolean[];
     layers: (number | null)[];
 };
+/**
+ * Build the batch-wide field recipe from every class schema. The active schema
+ * stays first for a stable card order; fields and enabled hierarchy layers that
+ * only exist in another token-length/class split are appended instead of being
+ * hidden from the controlled UI.
+ */
+export declare function engineSchemasToCards(schemas: Record<string, ClassSchema>, activeClassKey: string): {
+    fields: SmartGroupField[];
+    enabled: boolean[];
+    layers: (number | null)[];
+};
 /** Map engine sample groups to the live preview rail shape. */
 export declare function engineGroupsToRail(groups: SampleGroup[]): FieldRecipeGroup[];
 /** Map the Field Recipe QC label to the engine's class disposition routing. */

package/dist/components/SmartGroupFieldRecipe.vue.d.ts

@@ -5,8 +5,8 @@ declare const _default: import('vue').DefineComponent<SmartGroupFieldRecipeProps
     cancel: () => any;
     close: () => any;
     move: (index: number, direction: "up" | "down") => any;
-    manual: () => any;
     apply: (payload: FieldRecipeApplyPayload) => any;
+    manual: () => any;
     "update:route": (route: QcRoute) => any;
     "csv-file": (file: File) => any;
     "download-template": () => any;
@@ -16,8 +16,8 @@ declare const _default: import('vue').DefineComponent<SmartGroupFieldRecipeProps
     onCancel?: (() => any) | undefined;
     onClose?: (() => any) | undefined;
     onMove?: ((index: number, direction: "up" | "down") => any) | undefined;
-    onManual?: (() => any) | undefined;
     onApply?: ((payload: FieldRecipeApplyPayload) => any) | undefined;
+    onManual?: (() => any) | undefined;
     "onUpdate:route"?: ((route: QcRoute) => any) | undefined;
     "onCsv-file"?: ((file: File) => any) | undefined;
     "onDownload-template"?: (() => any) | undefined;

package/dist/components/index.js

@@ -1,7 +1,7 @@
 import { f as BaseModal_default, m as BaseButton_default } from "../experiment-utils-CLnzPPq5.js";
 import { a as BaseSelect_default, i as BasePill_default, n as Skeleton_default, s as BaseInput_default, t as EmptyState_default } from "../EmptyState-p90quq8Z.js";
 import { At as BaseCheckbox_default, Ct as DatePicker_default, Dt as BaseSlider_default, It as BaseTextarea_default, L as GeneratedPathInput_default, M as SequenceInput_default, O as ConcentrationInput_default, Ot as BaseRadioGroup_default, P as FormulaInput_default, at as TagsInput_default, it as NumberInput_default, j as MoleculeInput_default, jt as Tooltip_default, k as UnitInput_default, kt as BaseToggle_default, nt as AlertBox_default, ot as TimePicker_default, rt as FileUploader_default, tt as DateTimePicker_default, wt as MultiSelect_default, z as ArtifactSelectorModal_default } from "../useControlSchema-BMVb2XIQ.js";
-import { $ as SmartGroupFieldRecipe_default, A as ProtocolStepEditor_default, At as AppToastContainer_default, B as Breadcrumb_default, Ct as AppPluginSwitcher_default, Dt as ThemeToggle_default, Et as CollapsibleCard_default, F as RackEditor_default, Ft as BaseTabs_default, G as AppContainer_default, H as ProgressBar_default, I as BioTemplatePresetWorkspaceView_default, It as ColorSlider_default, J as ComponentBindingRenderer_default, K as DoseDesignWorkspaceView_default, L as BioTemplatePackWorkspaceView_default, M as ReagentEditor_default, Mt as Calendar_default, N as SmartGroupModal_default, Nt as DropdownButton_default, O as ChemicalFormula_default, Ot as ActionMenu_default, P as GroupAssigner_default, Pt as SegmentedControl_default, Q as SmartGroupManual_default, R as BioTemplateExperimentWorkspaceView_default, St as AppTopBar_default, Tt as PluginIcon_default, U as StatusIndicator_default, V as Avatar_default, W as Divider_default, X as SampleSelector_default, Y as ScheduleCalendar_default, Z as AutoGroupModal_default, _t as AppLayout_default, a as ResourceCard_default, at as DoseCalculator_default, b as InstrumentAlertLog_default, bt as FormActions_default, c as BatchProgressList_default, ct as GeneratedResultRenderer_default, dt as LoadingSpinner_default, et as ReagentList_default, gt as MobileSupportGate_default, ht as PluginWorkspaceView_default, i as SectionCard_default, it as ExperimentTimeline_default, j as SampleHierarchyTree_default, jt as DataFrame_default, k as ScientificNumber_default, kt as IconButton_default, l as AuditTrail_default, lt as GeneratedPlotlyResult_default, n as FitPanel_default, nt as SampleLegend_default, o as TimeRangeInput_default, ot as GeneratedPluginView_default, q as ControlWorkspaceView_default, r as ArtifactSaveDialog_default, rt as WellPlate_default, s as ExperimentDataViewer_default, st as JobsStatusTray_default, tt as PlateMapEditor_default, u as LcmsSequenceTable_default, ut as ChartContainer_default, v as InstrumentStatusCard_default, vt as AppSidebar_default, wt as AppAvatarMenu_default, x as SequenceProgressBar_default, xt as StepWizard_default, y as InstrumentStateBadge_default, yt as FormBuilder_default, z as BioTemplateRenderer_default } from "../components-BbtUpCTv.js";
+import { $ as SmartGroupFieldRecipe_default, A as ProtocolStepEditor_default, At as AppToastContainer_default, B as Breadcrumb_default, Ct as AppPluginSwitcher_default, Dt as ThemeToggle_default, Et as CollapsibleCard_default, F as RackEditor_default, Ft as BaseTabs_default, G as AppContainer_default, H as ProgressBar_default, I as BioTemplatePresetWorkspaceView_default, It as ColorSlider_default, J as ComponentBindingRenderer_default, K as DoseDesignWorkspaceView_default, L as BioTemplatePackWorkspaceView_default, M as ReagentEditor_default, Mt as Calendar_default, N as SmartGroupModal_default, Nt as DropdownButton_default, O as ChemicalFormula_default, Ot as ActionMenu_default, P as GroupAssigner_default, Pt as SegmentedControl_default, Q as SmartGroupManual_default, R as BioTemplateExperimentWorkspaceView_default, St as AppTopBar_default, Tt as PluginIcon_default, U as StatusIndicator_default, V as Avatar_default, W as Divider_default, X as SampleSelector_default, Y as ScheduleCalendar_default, Z as AutoGroupModal_default, _t as AppLayout_default, a as ResourceCard_default, at as DoseCalculator_default, b as InstrumentAlertLog_default, bt as FormActions_default, c as BatchProgressList_default, ct as GeneratedResultRenderer_default, dt as LoadingSpinner_default, et as ReagentList_default, gt as MobileSupportGate_default, ht as PluginWorkspaceView_default, i as SectionCard_default, it as ExperimentTimeline_default, j as SampleHierarchyTree_default, jt as DataFrame_default, k as ScientificNumber_default, kt as IconButton_default, l as AuditTrail_default, lt as GeneratedPlotlyResult_default, n as FitPanel_default, nt as SampleLegend_default, o as TimeRangeInput_default, ot as GeneratedPluginView_default, q as ControlWorkspaceView_default, r as ArtifactSaveDialog_default, rt as WellPlate_default, s as ExperimentDataViewer_default, st as JobsStatusTray_default, tt as PlateMapEditor_default, u as LcmsSequenceTable_default, ut as ChartContainer_default, v as InstrumentStatusCard_default, vt as AppSidebar_default, wt as AppAvatarMenu_default, x as SequenceProgressBar_default, xt as StepWizard_default, y as InstrumentStateBadge_default, yt as FormBuilder_default, z as BioTemplateRenderer_default } from "../components-DjJsjKqe.js";
 import { s as FormField_default, t as SettingsModal_default } from "../SettingsModal-D7LFUokT.js";
 import { r as ConfirmDialog_default, t as ExperimentPopover_default } from "../ExperimentPopover-tLwJ7XF4.js";
 import { r as ExperimentCodeBadge_default, t as ExperimentSelectorModal_default } from "../ExperimentSelectorModal-B6P2msT4.js";

package/dist/{components-BbtUpCTv.js → components-DjJsjKqe.js}

@@ -4,7 +4,7 @@ import { a as BaseSelect_default, i as BasePill_default, n as Skeleton_default,
 import { A as useConcentrationUnits, At as BaseCheckbox_default, Ct as DatePicker_default, Dt as BaseSlider_default, Ft as shift, H as getInjectedPlatformContext, I as useChemicalFormula, It as BaseTextarea_default, L as GeneratedPathInput_default, M as SequenceInput_default, Mt as computePosition, Nt as flip, O as ConcentrationInput_default, Ot as BaseRadioGroup_default, P as FormulaInput_default, Pt as offset, Q as normalizeJobPercent, R as _plugin_vue_export_helper_default, T as getDefaultControlView, Tt as useListSelection, W as resolveCurrentExperimentId, Z as jobStatusLabel, _ as controlsToFormSchema, at as TagsInput_default, ct as compareTime, f as resolveControlModel, ft as formatDuration, g as mergeControlWorkspaceOptions, h as controlValuesToComponentProps, it as NumberInput_default, j as MoleculeInput_default, jt as Tooltip_default, k as UnitInput_default, kt as BaseToggle_default, lt as durationMinutes, m as controlValuesToComponentBindingsById, nt as AlertBox_default, o as defineDoseDesignControlModel, ot as TimePicker_default, p as controlValuesToComponentBindings, pt as formatTime, q as useGeneratedAnalysis, r as getControlDefaults, rt as FileUploader_default, tt as DateTimePicker_default, u as useControlWorkspace, w as controlsToViewItems, wt as MultiSelect_default, x as controlsToSidebarPanels, y as controlsToSectionFormSchemas, z as ArtifactSelectorModal_default } from "./useControlSchema-BMVb2XIQ.js";
 import { a as pickExistingRecordKeys, c as normalizeItemInput, i as formSchemaFieldNames, l as normalizeLabelItemInput, o as recordValuesEqualForKeys, r as FormFieldRendererInternal_default, s as FormField_default, t as SettingsModal_default } from "./SettingsModal-D7LFUokT.js";
 import { t as useDropdownState } from "./useDropdownState-DSb3BC3N.js";
-import { B as useDoseCalculator, C as getSampleGroupParentPath, G as useMobileSupportGate, J as useTheme, K as APP_EXPERIMENT_KEY, N as useAutoGroup, P as parseCSV, Q as useTextSearch, R as DEFAULT_COLORS, S as getSampleGroupMajorPrefix, U as usePluginJobCenter, W as DEFAULT_MOBILE_VIEWPORT_QUERY, Y as useToast, _ as useScheduleDrag, a as useReagentSeries, b as useExpansionSet, c as useBioTemplatePresetWorkspace, et as useSortedItems, k as readFileAsText, l as useBioTemplatePackWorkspace, n as DEFAULT_PRESETS, o as useGroupAssignment, q as useAppExperiment, r as DEFAULT_UNITS, s as useRackEditor, t as useProtocolTemplates, v as useExperimentSamples, x as useSampleGroups, y as useExperimentData, z as useWellPlateEditor } from "./useProtocolTemplates-BWfNaynA.js";
+import { B as useDoseCalculator, C as getSampleGroupParentPath, G as useMobileSupportGate, K as APP_EXPERIMENT_KEY, N as useAutoGroup, P as parseCSV, R as DEFAULT_COLORS, S as getSampleGroupMajorPrefix, U as usePluginJobCenter, W as DEFAULT_MOBILE_VIEWPORT_QUERY, X as useTheme, Y as usePresenceHeartbeat, Z as useToast, _ as useScheduleDrag, a as useReagentSeries, b as useExpansionSet, c as useBioTemplatePresetWorkspace, et as useTextSearch, k as readFileAsText, l as useBioTemplatePackWorkspace, n as DEFAULT_PRESETS, nt as useSortedItems, o as useGroupAssignment, q as useAppExperiment, r as DEFAULT_UNITS, s as useRackEditor, t as useProtocolTemplates, v as useExperimentSamples, x as useSampleGroups, y as useExperimentData, z as useWellPlateEditor } from "./useProtocolTemplates-CIzDGj2R.js";
 import { r as useApi } from "./useApi-CDBq6z23.js";
 import { i as usePlatformContext, t as useFormBuilder } from "./useFormBuilder-DG3HOFGA.js";
 import { t as ANALYSIS_FILE_ARTIFACT_SCHEMA } from "./analysisArtifactTypes-DQ0MjwHZ.js";
@@ -3218,6 +3218,10 @@ var AppTopBar_default = /* @__PURE__ */ defineComponent({
 		const settingsOpen = ref(false);
 		const { isIntegrated, plugin } = usePlatformContext();
 		const isStandalone = computed(() => !isIntegrated.value);
+		usePresenceHeartbeat({
+			enabled: isIntegrated,
+			scope: computed(() => plugin.value?.id || plugin.value?.name || "")
+		});
 		const appExperiment = inject(APP_EXPERIMENT_KEY, null);
 		const canBindExperiment = computed(() => plugin.value?.plugin_type !== "static");
 		const pluginIcon = computed(() => {
@@ -10408,23 +10412,45 @@ function candidateColumns(columns, groupBy) {
 	return columns.filter((c) => c.role === "factor" || c.role === "replicate" || enabled.has(c.index));
 }
 /**
-* Map engine columns to Field Recipe cards + their on/off state (same order).
-* `layers` aligns with the cards: the column's 1-based position in the
-* `groupBy` layer order, or `null` when the column is not grouped by.
+* Build the batch-wide field recipe from every class schema. The active schema
+* stays first for a stable card order; fields and enabled hierarchy layers that
+* only exist in another token-length/class split are appended instead of being
+* hidden from the controlled UI.
 */
-function engineFieldsToCards(columns, groupBy) {
-	const candidates = candidateColumns(columns, groupBy);
+function engineSchemasToCards(schemas, activeClassKey) {
+	const entries = Object.entries(schemas);
+	const active = entries.find(([key]) => key === activeClassKey);
+	const ordered = active ? [active, ...entries.filter(([key]) => key !== activeClassKey)] : entries;
+	const candidates = /* @__PURE__ */ new Map();
+	const enabledOrder = [];
+	const enabled = /* @__PURE__ */ new Set();
+	for (const [, schema] of ordered) {
+		for (const index of schema.groupBy) {
+			const column = schema.columns.find((candidate) => candidate.index === index);
+			if (!column) continue;
+			const identity = column.displayName ?? column.name;
+			if (!enabled.has(identity)) {
+				enabled.add(identity);
+				enabledOrder.push(identity);
+			}
+		}
+		for (const column of candidateColumns(schema.columns, schema.groupBy)) {
+			const identity = column.displayName ?? column.name;
+			if (!candidates.has(identity)) candidates.set(identity, column);
+		}
+	}
+	const cards = [...candidates.entries()];
 	return {
-		fields: candidates.map((c) => ({
-			key: c.displayName ?? c.name,
-			role: roleLabel(c.role),
-			vals: c.uniqueValues.join(", "),
-			rep: c.role === "replicate"
+		fields: cards.map(([key, column]) => ({
+			key,
+			role: roleLabel(column.role),
+			vals: column.uniqueValues.join(", "),
+			rep: column.role === "replicate"
 		})),
-		enabled: candidates.map((c) => groupBy.includes(c.index)),
-		layers: candidates.map((c) => {
-			const pos = groupBy.indexOf(c.index);
-			return pos === -1 ? null : pos + 1;
+		enabled: cards.map(([key]) => enabled.has(key)),
+		layers: cards.map(([key]) => {
+			const position = enabledOrder.indexOf(key);
+			return position === -1 ? null : position + 1;
 		})
 	};
 }
@@ -10600,8 +10626,7 @@ var AutoGroupModal_default = /* @__PURE__ */ defineComponent({
 			excludeQc.value = value === "exclude";
 			autoGroup.setClassDispositions((c) => c.kind !== "biological" && c.kind !== "unknown", value === "exclude" ? "exclude" : value === "overlay" ? "overlay" : "group");
 		}
-		const groupByOrder = computed(() => autoGroup.activeSchema.value?.groupBy ?? []);
-		const fieldCards = computed(() => engineFieldsToCards(autoGroup.fields.value, groupByOrder.value));
+		const fieldCards = computed(() => engineSchemasToCards(autoGroup.schemas.value, autoGroup.activeClassKey.value));
 		const railGroups = computed(() => engineGroupsToRail(autoGroup.result.value.experimentalGroups ?? autoGroup.groups.value));
 		const qcSampleCount = computed(() => autoGroup.classes.value.filter((c) => c.kind !== "biological" && c.kind !== "unknown").reduce((acc, c) => acc + c.members.length, 0));
 		const qcChip = computed(() => qcRouting.value !== "mix" && qcSampleCount.value > 0 ? {
@@ -18248,4 +18273,4 @@ var components_exports = /* @__PURE__ */ __exportAll({
 //#endregion
 export { SmartGroupFieldRecipe_default as $, ProtocolStepEditor_default as A, AppToastContainer_default as At, Breadcrumb_default as B, estimateSequenceRemainingSeconds as C, AppPluginSwitcher_default as Ct, sequenceSamplesRemaining as D, ThemeToggle_default as Dt, sequenceProgressPercent as E, CollapsibleCard_default as Et, RackEditor_default as F, BaseTabs_default as Ft, AppContainer_default as G, ProgressBar_default as H, BioTemplatePresetWorkspaceView_default as I, ColorSlider_default as It, ComponentBindingRenderer_default as J, DoseDesignWorkspaceView_default as K, BioTemplatePackWorkspaceView_default as L, ReagentEditor_default as M, Calendar_default as Mt, SmartGroupModal_default as N, DropdownButton_default as Nt, ChemicalFormula_default as O, ActionMenu_default as Ot, GroupAssigner_default as P, SegmentedControl_default as Pt, SmartGroupManual_default as Q, BioTemplateExperimentWorkspaceView_default as R, estimateSequenceFinishDate as S, AppTopBar_default as St, formatSequenceRemaining as T, PluginIcon_default as Tt, StatusIndicator_default as U, Avatar_default as V, Divider_default as W, SampleSelector_default as X, ScheduleCalendar_default as Y, AutoGroupModal_default as Z, reconstructLcmsPlateCellsFromSequenceItems as _, AppLayout_default as _t, ResourceCard_default as a, DoseCalculator_default as at, InstrumentAlertLog_default as b, FormActions_default as bt, BatchProgressList_default as c, GeneratedResultRenderer_default as ct, DEFAULT_LCMS_SEQUENCE_COLUMNS as d, LoadingSpinner_default as dt, ReagentList_default as et, basenameFromWindowsPath as f, generatedJobDefaults as ft, lcmsWellIdFromPosition as g, MobileSupportGate_default as gt, inferLcmsPlateTypeFromWellIds as h, PluginWorkspaceView_default as ht, SectionCard_default as i, ExperimentTimeline_default as it, SampleHierarchyTree_default as j, DataFrame_default as jt, ScientificNumber_default as k, IconButton_default as kt, AuditTrail_default as l, GeneratedPlotlyResult_default as lt, extractLcmsSampleName as m, normalizeGeneratedJobInput as mt, FitPanel_default as n, SampleLegend_default as nt, TimeRangeInput_default as o, GeneratedPluginView_default as ot, extractLcmsCommonPrefix as p, generatedJobFormSchema as pt, ControlWorkspaceView_default as q, ArtifactSaveDialog_default as r, WellPlate_default as rt, ExperimentDataViewer_default as s, JobsStatusTray_default as st, components_exports as t, PlateMapEditor_default as tt, LcmsSequenceTable_default as u, ChartContainer_default as ut, InstrumentStatusCard_default as v, AppSidebar_default as vt, formatSequenceEta as w, AppAvatarMenu_default as wt, SequenceProgressBar_default as x, StepWizard_default as xt, InstrumentStateBadge_default as y, FormBuilder_default as yt, BioTemplateRenderer_default as z };
 
-//# sourceMappingURL=components-BbtUpCTv.js.map
+//# sourceMappingURL=components-DjJsjKqe.js.map