@morscherlab/mint-sdk 1.0.63 → 1.1.0-beta.2

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Files changed (165) hide show
  1. package/README.md +101 -2
  2. package/dist/EmptyState-D1c4RdC7.js +638 -0
  3. package/dist/EmptyState-D1c4RdC7.js.map +1 -0
  4. package/dist/{ExperimentPopover-BbPkIFsI.js → ExperimentPopover-BFw3QX8L.js} +10 -9
  5. package/dist/{ExperimentPopover-BbPkIFsI.js.map → ExperimentPopover-BFw3QX8L.js.map} +1 -1
  6. package/dist/{ExperimentSelectorModal-DZeSd-yr.js → ExperimentSelectorModal-B7w6k3Y8.js} +12 -216
  7. package/dist/ExperimentSelectorModal-B7w6k3Y8.js.map +1 -0
  8. package/dist/{SettingsModal-CJgLadsN.js → SettingsModal-DPDwCbXK.js} +12 -9
  9. package/dist/{SettingsModal-CJgLadsN.js.map → SettingsModal-DPDwCbXK.js.map} +1 -1
  10. package/dist/__tests__/components/GeneratedPlotlyResult.test.d.ts +1 -0
  11. package/dist/__tests__/components/GeneratedPluginView.test.d.ts +1 -0
  12. package/dist/__tests__/components/GeneratedResultRenderer.test.d.ts +1 -0
  13. package/dist/__tests__/components/InstrumentAlertLog.test.d.ts +1 -0
  14. package/dist/__tests__/composables/useGeneratedAnalysis.test.d.ts +1 -0
  15. package/dist/__tests__/generatedUi.test.d.ts +1 -0
  16. package/dist/{analysisArtifactTypes-Cu40dzSG.js → analysisArtifactTypes-ejqR8MX3.js} +1 -1
  17. package/dist/analysisArtifactTypes-ejqR8MX3.js.map +1 -0
  18. package/dist/{auth-DZAwEeis.js → auth-B87xM--s.js} +1 -1
  19. package/dist/{auth-DZAwEeis.js.map → auth-B87xM--s.js.map} +1 -1
  20. package/dist/chunk-BoAXSpZd.js +33 -0
  21. package/dist/components/AppSidebar.vue.d.ts +1 -1
  22. package/dist/components/AutoGroupModal.vue.d.ts +2 -2
  23. package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +2 -2
  24. package/dist/components/CollapsibleCard.vue.d.ts +1 -1
  25. package/dist/components/ComponentBindingRenderer.vue.d.ts +1 -1
  26. package/dist/components/ConfirmDialog.vue.d.ts +1 -1
  27. package/dist/components/ExperimentDataViewer.vue.d.ts +1 -1
  28. package/dist/components/ExperimentTimeline.vue.d.ts +1 -1
  29. package/dist/components/FileUploader.vue.d.ts +4 -2
  30. package/dist/components/FitPanel.vue.d.ts +1 -1
  31. package/dist/components/FormActions.vue.d.ts +1 -1
  32. package/dist/components/FormBuilder.vue.d.ts +1 -1
  33. package/dist/components/GeneratedPathInput.vue.d.ts +12 -0
  34. package/dist/components/GeneratedPlotlyResult.vue.d.ts +11 -0
  35. package/dist/components/GeneratedPluginView.vue.d.ts +10 -0
  36. package/dist/components/GeneratedResultRenderer.vue.d.ts +6 -0
  37. package/dist/components/JobsStatusTray.vue.d.ts +5 -1
  38. package/dist/components/LcmsSequenceTable.vue.d.ts +1 -1
  39. package/dist/components/SampleLegend.vue.d.ts +1 -1
  40. package/dist/components/SampleSelector.vue.d.ts +2 -2
  41. package/dist/components/SettingsModal.vue.d.ts +1 -1
  42. package/dist/components/SmartGroupFieldRecipe.vue.d.ts +2 -2
  43. package/dist/components/index.d.ts +4 -0
  44. package/dist/components/index.js +8 -9
  45. package/dist/components/internal/PlateMapEditorToolbarInternal.vue.d.ts +2 -2
  46. package/dist/{components-DdzHh3a_.js → components-UfkPN1bK.js} +2255 -2303
  47. package/dist/components-UfkPN1bK.js.map +1 -0
  48. package/dist/composables/index.d.ts +2 -3
  49. package/dist/composables/index.js +10 -11
  50. package/dist/composables/platformContextHelpers.d.ts +0 -2
  51. package/dist/composables/useAnalysisArtifacts.d.ts +1 -3
  52. package/dist/composables/useGeneratedAnalysis.d.ts +62 -0
  53. package/dist/composables/useJobsStatusTray.d.ts +48 -4
  54. package/dist/composables/usePlatformContext.d.ts +3 -0
  55. package/dist/composables/usePluginClient.d.ts +6 -3
  56. package/dist/{composables-BUUphBqg.js → composables-B512bWJP.js} +155 -74
  57. package/dist/composables-B512bWJP.js.map +1 -0
  58. package/dist/experiment-utils-CxkruZ3G.js +392 -0
  59. package/dist/experiment-utils-CxkruZ3G.js.map +1 -0
  60. package/dist/generated/schema.d.ts +7 -0
  61. package/dist/generated-ui/main.d.ts +0 -0
  62. package/dist/index.d.ts +1 -0
  63. package/dist/index.js +15 -18
  64. package/dist/index.js.map +1 -1
  65. package/dist/install.js +7 -8
  66. package/dist/install.js.map +1 -1
  67. package/dist/plotly.min-BR53hja4.js +180634 -0
  68. package/dist/plotly.min-BR53hja4.js.map +1 -0
  69. package/dist/stores/auth.d.ts +2 -2
  70. package/dist/stores/index.js +1 -1
  71. package/dist/styles.css +10543 -10404
  72. package/dist/templates/index.js +4 -3
  73. package/dist/templates/packs.d.ts +0 -1
  74. package/dist/{templates-CNbPQNID.js → templates-Cttbjbyc.js} +2 -4
  75. package/dist/templates-Cttbjbyc.js.map +1 -0
  76. package/dist/types/analysisArtifactTypes.d.ts +0 -8
  77. package/dist/types/form-builder.d.ts +1 -1
  78. package/dist/types/generated-ui.d.ts +170 -0
  79. package/dist/types/index.d.ts +2 -1
  80. package/dist/types/index.js +1 -1
  81. package/dist/types/instrument.d.ts +1 -0
  82. package/dist/types/jobs.d.ts +7 -1
  83. package/dist/types/platform.d.ts +2 -0
  84. package/dist/{useControlSchema-BZNdalmL.js → useControlSchema-Dallso-L.js} +1852 -171
  85. package/dist/useControlSchema-Dallso-L.js.map +1 -0
  86. package/dist/{useDropdownState-Bb-c_PeE.js → useDropdownState-gVaMXtwW.js} +2 -2
  87. package/dist/{useDropdownState-Bb-c_PeE.js.map → useDropdownState-gVaMXtwW.js.map} +1 -1
  88. package/dist/{useExperimentSelector-DRbj6vse.js → useExperimentSelector-BMjzNcf2.js} +4 -255
  89. package/dist/useExperimentSelector-BMjzNcf2.js.map +1 -0
  90. package/dist/{useFormBuilder-DKekvXRs.js → useFormBuilder-BXaaDI41.js} +2 -2
  91. package/dist/{useFormBuilder-DKekvXRs.js.map → useFormBuilder-BXaaDI41.js.map} +1 -1
  92. package/dist/{useAnalysisArtifacts-C3l0a0vu.js → useProtocolTemplates-BP7_4RGQ.js} +307 -475
  93. package/dist/useProtocolTemplates-BP7_4RGQ.js.map +1 -0
  94. package/package.json +7 -3
  95. package/src/__tests__/components/GeneratedPathInput.test.ts +132 -0
  96. package/src/__tests__/components/GeneratedPlotlyResult.test.ts +117 -0
  97. package/src/__tests__/components/GeneratedPluginView.test.ts +230 -0
  98. package/src/__tests__/components/GeneratedResultRenderer.test.ts +93 -0
  99. package/src/__tests__/components/InstrumentAlertLog.test.ts +59 -0
  100. package/src/__tests__/composables/formBuilderRegistry.test.ts +5 -1
  101. package/src/__tests__/composables/useAnalysisArtifacts.test.ts +1 -74
  102. package/src/__tests__/composables/useApi.test.ts +8 -0
  103. package/src/__tests__/composables/useGeneratedAnalysis.test.ts +1740 -0
  104. package/src/__tests__/composables/useJobsStatusTray.test.ts +179 -1
  105. package/src/__tests__/composables/usePlatformContext.test.ts +28 -0
  106. package/src/__tests__/composables/usePluginClient.test.ts +366 -20
  107. package/src/__tests__/composables/usePluginConfig.test.ts +323 -7
  108. package/src/__tests__/docs/extractDocsTemplates.test.ts +0 -1
  109. package/src/__tests__/generatedUi.test.ts +119 -0
  110. package/src/__tests__/templates/templates.test.ts +1 -1
  111. package/src/components/FileUploader.vue +49 -11
  112. package/src/components/GeneratedPathInput.vue +218 -0
  113. package/src/components/GeneratedPlotlyResult.vue +87 -0
  114. package/src/components/GeneratedPluginView.vue +279 -0
  115. package/src/components/GeneratedResultRenderer.vue +137 -0
  116. package/src/components/InstrumentAlertLog.vue +2 -2
  117. package/src/components/JobsStatusTray.vue +14 -8
  118. package/src/components/index.ts +4 -0
  119. package/src/composables/formBuilderRegistry.ts +2 -0
  120. package/src/composables/index.ts +18 -5
  121. package/src/composables/platformContextHelpers.ts +3 -10
  122. package/src/composables/useAnalysisArtifacts.ts +0 -48
  123. package/src/composables/useApi.ts +1 -0
  124. package/src/composables/useGeneratedAnalysis.ts +1252 -0
  125. package/src/composables/useJobsStatusTray.ts +234 -45
  126. package/src/composables/usePluginClient.ts +152 -25
  127. package/src/composables/usePluginConfig.ts +156 -20
  128. package/src/generated/schema.ts +130 -0
  129. package/src/generated-ui/main.ts +21 -0
  130. package/src/index.ts +3 -0
  131. package/src/jobs.ts +5 -0
  132. package/src/plotly-dist.d.ts +3 -0
  133. package/src/templates/packs.ts +0 -3
  134. package/src/types/analysisArtifactTypes.ts +0 -9
  135. package/src/types/form-builder.ts +1 -0
  136. package/src/types/generated-ui.ts +176 -0
  137. package/src/types/index.ts +2 -1
  138. package/src/types/instrument.ts +1 -0
  139. package/src/types/jobs.ts +10 -1
  140. package/src/types/platform.ts +2 -0
  141. package/dist/BaseButton-Dgqrze41.js +0 -74
  142. package/dist/BaseButton-Dgqrze41.js.map +0 -1
  143. package/dist/BaseModal-B9UA8Y_I.js +0 -165
  144. package/dist/BaseModal-B9UA8Y_I.js.map +0 -1
  145. package/dist/BaseSelect-ekgr9fDo.js +0 -179
  146. package/dist/BaseSelect-ekgr9fDo.js.map +0 -1
  147. package/dist/ExperimentPopover-Ryusjrhv.js +0 -4
  148. package/dist/ExperimentSelectorModal-Cg4-LXBD.js +0 -5
  149. package/dist/ExperimentSelectorModal-DZeSd-yr.js.map +0 -1
  150. package/dist/SettingsModal-Bl_9w2Y3.js +0 -5
  151. package/dist/analysisArtifactTypes-Cu40dzSG.js.map +0 -1
  152. package/dist/components-DdzHh3a_.js.map +0 -1
  153. package/dist/composables/analysisArtifactTarget.d.ts +0 -5
  154. package/dist/composables-BUUphBqg.js.map +0 -1
  155. package/dist/experiment-utils-Bfa7CwPU.js +0 -108
  156. package/dist/experiment-utils-Bfa7CwPU.js.map +0 -1
  157. package/dist/templates-CNbPQNID.js.map +0 -1
  158. package/dist/useAnalysisArtifacts-C3l0a0vu.js.map +0 -1
  159. package/dist/useControlSchema-BZNdalmL.js.map +0 -1
  160. package/dist/useEventListener-CfVkP9Xz.js +0 -57
  161. package/dist/useEventListener-CfVkP9Xz.js.map +0 -1
  162. package/dist/useExperimentSelector-DRbj6vse.js.map +0 -1
  163. package/src/__tests__/composables/analysisArtifactTarget.test.ts +0 -77
  164. package/src/composables/analysisArtifactTarget.ts +0 -53
  165. /package/dist/__tests__/{composables/analysisArtifactTarget.test.d.ts → components/GeneratedPathInput.test.d.ts} +0 -0
package/README.md CHANGED
@@ -105,8 +105,8 @@ const result = await pluginClient.analyze(
105
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  )
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  ```
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- Generated files also expose typed plugin settings when the backend declares a
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- `settings_model`:
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+ Generated files also expose typed plugin settings when the backend declares
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+ `@mint_plugin(config=PluginConfig)`:
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  ```typescript
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  import { useGeneratedPluginSettings } from './generated/mint-plugin'
@@ -115,6 +115,11 @@ const { settings } = useGeneratedPluginSettings()
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  const threshold = settings.value?.threshold
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  ```
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+ When `.env`, process-environment, or startup values override a field, saving
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+ still updates its backing value. The effective override remains active, while
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+ the saved value is returned in `stored_settings` and marked `inactive` until
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+ that higher-priority override is removed.
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+
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  The generated client is built from backend plugin metadata, FastAPI routes, and Pydantic schemas, and uses the frontend SDK to resolve the API prefix automatically.
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  FastAPI request or response content declared as standard
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  `application/octet-stream` is generated as a raw binary transport: request
@@ -345,6 +350,100 @@ replacement path.
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  ## Composables
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+ ### `usePluginJobs(options)`
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+
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+ Generated plugin contracts wrap this composable with definition-specific
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+ input, job, and output types. For a component dedicated to one generated job,
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+ bind the definition once with `forDefinition()`:
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+
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+ ```typescript
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+ import { usePluginJobs } from './generated/mint-plugin'
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+
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+ const jobs = usePluginJobs()
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+ await jobs.ready()
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+
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+ const analyzeJobs = jobs.forDefinition('analyze')
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+ const job = await analyzeJobs.submit({
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+ source: new File(['peak\n1'], 'peaks.csv'),
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+ threshold: 0.1,
369
+ })
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+ const result = await analyzeJobs.loadResult(job)
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+ const canonicalJob = await analyzeJobs.getJob(job.job_id)
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+ const completedJob = await analyzeJobs.waitForJob(canonicalJob, {
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+ signal: abortController.signal,
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+ rejectOnFailure: true,
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+ })
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+
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+ await analyzeJobs.cancelJob(canonicalJob)
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+
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+ // Releases only finished `analyze` jobs and their retained results.
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+ await analyzeJobs.clearFinishedJobs()
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+ ```
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+
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+ The returned scope exposes a typed `jobs` getter, `isJob()` type guard,
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+ `submit()`, `getJob()`, `waitForJob()`, `loadResult()`, `cancelJob()`, `deleteJob()`, and
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+ definition-scoped `clearFinishedJobs()`. It also exposes the generated
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+ `lifecycle` and `profile` literals for that definition without adding runtime
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+ requests. Passing a job from another definition
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+ fails instead of crossing the scope. Capability fields are presentation hints;
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+ the server remains authoritative when scoped cancel/delete methods are called.
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+ The root wrapper still supports dynamic definition IDs through `submit()` and
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+ `jobsFor()`. Its no-argument `clearFinishedJobs()` intentionally clears
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+ terminal jobs across every definition.
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+
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+ The underlying frontend composable accepts an optional definition ID in
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+ `clearFinishedJobs(definitionId)`; generated clients expose the scoped method
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+ so static definition IDs retain their generated input, job, and output types.
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+ `getJob()` fetches one fresh canonical job without refreshing the list.
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+ `waitForJob()` settles from the same SSE/poll-backed canonical source and
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+ cleans up on abort, deletion, or disposal, so callers do not need a second
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+ event stream or Promise registry. A call made while the runtime is paused
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+ rejects immediately. Waiting on a known active job tolerates a transient direct
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+ lookup failure and continues through SSE/poll updates; pausing an existing wait
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+ suspends those updates until `resume()`.
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+ `cancelJob()` updates active work, while `deleteJob()` releases one terminal
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+ job and its retained result. Background work can be `pause()`d and `resume()`d,
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+ while `dispose()` is idempotent and also runs automatically with the owning Vue
407
+ effect scope.
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+
409
+ Both ordinary `uploadPath({ ..., signal })` and a staged scope's
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+ `uploadPart(job, { ..., signal })` forward the supplied `AbortSignal` to the
411
+ authenticated multipart request. Abort stops the client-side transfer, but the
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+ caller should refresh job/staging state before retrying because the server may
413
+ already have committed the upload.
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+
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+ `cancelJob()` and `deleteJob()` accept either a canonical job object or its ID.
416
+
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+ Pass the runtime's canonical source directly to standard job UI. The job center
418
+ derives its groups from the same jobs ref and does not mirror it with a watcher:
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+
420
+ ```vue
421
+ <script setup lang="ts">
422
+ import { JobsStatusTray } from '@morscherlab/mint-sdk'
423
+ import { usePluginJobs } from './generated/mint-plugin'
424
+
425
+ const jobs = usePluginJobs()
426
+ </script>
427
+
428
+ <template>
429
+ <JobsStatusTray :source="jobs" />
430
+ </template>
431
+ ```
432
+
433
+ The older `jobs` plus `adapter` tray inputs remain available for compatibility.
434
+ New integrations should pass the runtime itself so polling, SSE updates, and
435
+ job actions continue to have exactly one state owner.
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+
437
+ When an incremental migration temporarily has more than one owner, use
438
+ `combinePluginJobSources([sdkJobs, legacyJobs])`. It preserves each source's
439
+ live jobs getter, fans out refresh/clear operations, routes per-job actions to
440
+ the owning source, and rejects duplicate IDs instead of guessing.
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+
442
+ Job state exposes `definition_id`, `result_status`, and `result_expires_at`.
443
+ Managed file results carry a short-lived, result-scoped `download_url` instead
444
+ of embedded base64 data or the user's bearer token, so regular browser
445
+ downloads work through an integrated plugin proxy.
446
+
348
447
  ### `useApi(options?)`
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448
  Generic API client with auth interceptor.
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449