@morscherlab/mint-sdk 1.0.0-beta.3 → 1.0.0-beta.5

package/dist/templates/adapters.d.ts

@@ -1,5 +1,5 @@
 import { PlateMapEditorState, Well } from '../types';
-import { AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, BioTemplateEnvelope, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, DataFrameTemplate, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowPanelColumnsAdapterResult, FlowPanelDataFrameAdapterResult, FlowPanelRowsAdapterResult, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunRowsAdapterResult, InstrumentRunTemplate, InstrumentRunTemplateData, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrColumnsAdapterResult, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrRowsAdapterResult, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRowsAdapterResult, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepTemplate, SamplePrepTemplateData, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TemplateDataFrameAdapterResult, WellMapAdapterResult } from './types';
+import { AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, BioTemplateEnvelope, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, DataFrameTemplate, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowPanelColumnsAdapterResult, FlowPanelDataFrameAdapterResult, FlowPanelRowsAdapterResult, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, InstrumentRunTemplate, InstrumentRunTemplateData, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrColumnsAdapterResult, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrRowsAdapterResult, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRowsAdapterResult, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepTemplate, SamplePrepTemplateData, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TemplateDataFrameAdapterResult, WellMapAdapterResult } from './types';
 export declare function toPlateMapEditorState(template: PlateMapTemplate | PlateMapTemplateData): PlateMapEditorAdapterResult;
 export declare function toWellPlateWells(template: PlateMapTemplate | PlateMapTemplateData, plateId?: string): WellMapAdapterResult;
 export declare function toSampleRows(template: SampleSheetTemplate | SampleSheetTemplateData): SampleRowsAdapterResult;
@@ -25,6 +25,8 @@ export declare function toProtocolDataFrame(template: ProtocolStepsTemplate | Pr
 export declare function toAssayMatrixRows(template: AssayMatrixTemplate | AssayMatrixTemplateData): AssayMatrixRowsAdapterResult;
 export declare function toAssayMatrixColumns(template: AssayMatrixTemplate | AssayMatrixTemplateData): AssayMatrixColumnsAdapterResult;
 export declare function toAssayMatrixDataFrame(template: AssayMatrixTemplate | AssayMatrixTemplateData): AssayMatrixDataFrameAdapterResult;
+/** Convert an assay-matrix template into SampleSelector options derived from assay samples. */
+export declare function toAssayMatrixSampleOptions(template: AssayMatrixTemplate | AssayMatrixTemplateData): AssayMatrixSampleOptionsAdapterResult;
 export declare function toReagentListItems(template: ReagentListTemplate | ReagentListTemplateData): ReagentListItemsAdapterResult;
 export declare function toReagentRows(template: ReagentListTemplate | ReagentListTemplateData): ReagentRowsAdapterResult;
 export declare function toReagentColumns(): ReagentColumnsAdapterResult;
@@ -35,6 +37,10 @@ export declare function toFlowPanelDataFrame(template: FlowCytometryPanelTemplat
 export declare function toInstrumentRunRows(template: InstrumentRunTemplate | InstrumentRunTemplateData): InstrumentRunRowsAdapterResult;
 export declare function toInstrumentRunColumns(): InstrumentRunColumnsAdapterResult;
 export declare function toInstrumentRunDataFrame(template: InstrumentRunTemplate | InstrumentRunTemplateData): InstrumentRunDataFrameAdapterResult;
+/** Convert an instrument-run template into ExperimentTimeline protocol steps for acquisition queue previews. */
+export declare function toInstrumentRunSteps(template: InstrumentRunTemplate | InstrumentRunTemplateData): InstrumentRunStepsAdapterResult;
+/** Convert an instrument-run template into readonly ScheduleCalendar events ordered by run queue timing. */
+export declare function toInstrumentRunScheduleEvents(template: InstrumentRunTemplate | InstrumentRunTemplateData): InstrumentRunScheduleEventsAdapterResult;
 export declare function toQpcrRows(template: QpcrPlateTemplate | QpcrPlateTemplateData): QpcrRowsAdapterResult;
 export declare function toQpcrColumns(): QpcrColumnsAdapterResult;
 export declare function toQpcrDataFrame(template: QpcrPlateTemplate | QpcrPlateTemplateData): QpcrDataFrameAdapterResult;

package/dist/templates/catalog.d.ts

@@ -122,8 +122,8 @@ export declare const bioTemplateCatalog: readonly [{
     readonly aliases: readonly ["omics matrix", "measurement matrix", "readout matrix", "feature table"];
     readonly python_import: "from mint_sdk.templates import AssayMatrixTemplate, save_template";
     readonly python_example: "AssayMatrixTemplate.create(samples=[\"S001\", \"S002\"], features=[\"Lactate\", \"Glucose\"])";
-    readonly frontend_import: "import { toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toAssayMatrixDataFrame", "toAssayMatrixRows", "toAssayMatrixColumns"];
+    readonly frontend_import: "import { toAssayMatrixSampleOptions, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
+    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toAssayMatrixDataFrame", "toAssayMatrixRows", "toAssayMatrixColumns", "toAssayMatrixSampleOptions"];
     readonly components: readonly ["DataFrame", "ChartContainer", "SampleSelector"];
     readonly add_command: "mint add data-template assay-matrix --page";
 }, {
@@ -164,9 +164,9 @@ export declare const bioTemplateCatalog: readonly [{
     readonly aliases: readonly ["run queue", "sequence table", "sample queue", "lcms run", "instrument sequence", "batch run"];
     readonly python_import: "from mint_sdk.templates import InstrumentRunTemplate, save_template";
     readonly python_example: "InstrumentRunTemplate.create([\"S001\", \"S002\"], instrument=\"LC-MS\")";
-    readonly frontend_import: "import { toInstrumentRunDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toInstrumentRunDataFrame", "toInstrumentRunRows", "toInstrumentRunColumns"];
-    readonly components: readonly ["DataFrame", "ScheduleCalendar", "SampleSelector"];
+    readonly frontend_import: "import { toInstrumentRunDataFrame, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
+    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toInstrumentRunDataFrame", "toInstrumentRunRows", "toInstrumentRunColumns", "toInstrumentRunSteps", "toInstrumentRunScheduleEvents"];
+    readonly components: readonly ["DataFrame", "ExperimentTimeline", "ScheduleCalendar", "SampleSelector"];
     readonly add_command: "mint add data-template instrument-run --page";
 }, {
     readonly name: "qpcr-plate";

package/dist/templates/componentBindings.d.ts

@@ -12,6 +12,15 @@ export interface BioTemplateComponentBinding {
 export interface BioTemplateComponentPropsBinding extends BioTemplateComponentBinding {
     propsObject: Record<string, unknown>;
 }
+export interface BioTemplateResolvedComponentBinding extends Omit<BioTemplateComponentBinding, 'props'> {
+    /** Prop names advertised by the static template/component compatibility catalog. */
+    propNames: readonly string[];
+    /** Concrete props ready for direct `v-bind="componentBindingsById[id].props"` use. */
+    props: Record<string, unknown>;
+    /** Backward-compatible alias for callers that already consume componentProps entries. */
+    propsObject: Record<string, unknown>;
+}
+export type BioTemplateComponentBindingsById = Record<string, BioTemplateResolvedComponentBinding>;
 export type BioTemplateComponentPropsById = Record<string, Record<string, unknown>>;
 export type BioTemplateComponentPropsByComponent = Record<string, Record<string, unknown>[]>;
 export interface BioTemplateComponentPropsLookupOptions {
@@ -47,6 +56,10 @@ export interface BioTemplateComponentUsage {
 export declare function listBioTemplateComponentBindings(): Record<TemplateId, BioTemplateComponentBinding[]>;
 export declare function getBioTemplateComponentBindings(target: BioTemplateComponentTarget): BioTemplateComponentBinding[];
 export declare function toBioTemplateComponentProps(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateComponentPropsBinding[];
+/** Return resolved component bindings with concrete props for direct slot rendering. */
+export declare function toBioTemplateComponentBindings(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateResolvedComponentBinding[];
+/** Return resolved component bindings keyed by stable template component id. */
+export declare function toBioTemplateComponentBindingsById(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateComponentBindingsById;
 /** Return component props keyed by stable binding id for direct `v-bind="componentPropsById[id]"` use. */
 export declare function toBioTemplateComponentPropsById(target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope): BioTemplateComponentPropsById;
 /** Return component props grouped by SDK component name for direct WellPlate/DoseCalculator binding. */

package/dist/templates/index.d.ts

@@ -2,14 +2,14 @@ export { assertTemplateEnvelope, bioTemplatePresetControlValuesToOptions, create
 export type { BioTemplateControlValues, } from './builders';
 export { bioTemplateCatalog, getBioTemplateInfo, listBioTemplateCatalog, searchBioTemplateCatalog, } from './catalog';
 export { bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, createBioTemplateControlToolkit, getBioTemplateControlDefaults, getBioTemplateControlSchema, listBioTemplateControlSchemas, listBioTemplatePresetControlSchemas, requireBioTemplateControlSchema, } from './controlSchemas';
-export { getBioTemplateComponentProps, getBioTemplateComponentBindings, listBioTemplateComponentBindings, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, } from './componentBindings';
-export type { BioTemplateComponentPropsByComponent, BioTemplateComponentPropsById, BioTemplateComponentPropsLookupOptions, } from './componentBindings';
+export { getBioTemplateComponentProps, getBioTemplateComponentBindings, listBioTemplateComponentBindings, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, } from './componentBindings';
+export type { BioTemplateComponentBindingsById, BioTemplateComponentPropsByComponent, BioTemplateComponentPropsById, BioTemplateComponentPropsLookupOptions, } from './componentBindings';
 export { bioTemplatePresets, getBioTemplatePresetInfo, listBioTemplatePresets, searchBioTemplatePresets, } from './presets';
 export { bioTemplatePacks, getBioTemplatePackInfo, listBioTemplatePacks, searchBioTemplatePacks, } from './packs';
-export { toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, } from './adapters';
-export type { AssayFeature, AssayFeatureType, AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, AssayMeasurement, AssaySample, BioTemplateEnvelope, CalibrationAcceptance, CalibrationAcceptanceInput, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, CalibrationModel, CalibrationPoint, CalibrationPointInput, CalibrationPointRole, CalibrationPointStatus, CompoundDoseSeries, ControlDefinition, ControlRole, CreateBioTemplatePackCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreateLcmsBatchCollectionOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowControlKind, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowMarkerPurpose, FlowPanelColumnsAdapterResult, FlowPanelControl, FlowPanelDataFrameAdapterResult, FlowPanelMarker, FlowPanelRowsAdapterResult, InstrumentMethod, InstrumentMethodInput, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunItem, InstrumentRunItemInput, InstrumentRunItemKind, InstrumentRunRowsAdapterResult, InstrumentRunStatus, InstrumentRunTemplate, InstrumentRunTemplateData, DataFrameAdapterResult, DataFrameTemplate, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepRecord, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrChemistry, QpcrColumnsAdapterResult, QpcrControlKind, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrReaction, QpcrRowsAdapterResult, QpcrSample, QpcrTarget, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentKind, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRecord, ReagentTemplateInput, ReagentRowsAdapterResult, SampleColumn, SampleColumnType, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleGroupDefinition, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepStatus, SamplePrepStep, SamplePrepStepInput, SamplePrepStepType, SamplePrepTemplate, SamplePrepTemplateData, SampleRecord, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseCondition, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseSample, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TimePoint, TimeUnit, TemplateId, TemplatePackId, TemplatePresetId, TemplateCollection, TemplateCollectionEnvelope, TemplateDataFrameAdapterResult, TemplateKind, TemplatePlateMap, TemplateSample, TemplateWell, WellMapAdapterResult, } from './types';
+export { toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, } from './adapters';
+export type { AssayFeature, AssayFeatureType, AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, AssayMeasurement, AssaySample, BioTemplateEnvelope, CalibrationAcceptance, CalibrationAcceptanceInput, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, CalibrationModel, CalibrationPoint, CalibrationPointInput, CalibrationPointRole, CalibrationPointStatus, CompoundDoseSeries, ControlDefinition, ControlRole, CreateBioTemplatePackCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreateLcmsBatchCollectionOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowControlKind, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowMarkerPurpose, FlowPanelColumnsAdapterResult, FlowPanelControl, FlowPanelDataFrameAdapterResult, FlowPanelMarker, FlowPanelRowsAdapterResult, InstrumentMethod, InstrumentMethodInput, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunItem, InstrumentRunItemInput, InstrumentRunItemKind, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, InstrumentRunStatus, InstrumentRunTemplate, InstrumentRunTemplateData, DataFrameAdapterResult, DataFrameTemplate, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepRecord, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrChemistry, QpcrColumnsAdapterResult, QpcrControlKind, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrReaction, QpcrRowsAdapterResult, QpcrSample, QpcrTarget, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentKind, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRecord, ReagentTemplateInput, ReagentRowsAdapterResult, SampleColumn, SampleColumnType, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleGroupDefinition, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepStatus, SamplePrepStep, SamplePrepStepInput, SamplePrepStepType, SamplePrepTemplate, SamplePrepTemplateData, SampleRecord, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseCondition, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseSample, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TimePoint, TimeUnit, TemplateId, TemplatePackId, TemplatePresetId, TemplateCollection, TemplateCollectionEnvelope, TemplateDataFrameAdapterResult, TemplateKind, TemplatePlateMap, TemplateSample, TemplateWell, WellMapAdapterResult, } from './types';
 export type { BioTemplateCatalogEntry, } from './catalog';
-export type { BioTemplateComponentBinding, BioTemplateComponentImport, BioTemplateComponentPropsBinding, BioTemplateComponentSnippet, BioTemplateComponentSnippetOptions, BioTemplateComponentTarget, BioTemplateComponentUsage, BioTemplateComponentUsageOptions, } from './componentBindings';
+export type { BioTemplateComponentBinding, BioTemplateComponentImport, BioTemplateComponentPropsBinding, BioTemplateResolvedComponentBinding, BioTemplateComponentSnippet, BioTemplateComponentSnippetOptions, BioTemplateComponentTarget, BioTemplateComponentUsage, BioTemplateComponentUsageOptions, } from './componentBindings';
 export type { BioTemplateControlSchema, BioTemplateControlTarget, } from './controlSchemas';
 export type { BioTemplatePresetEntry, } from './presets';
 export type { BioTemplatePackEntry, } from './packs';

package/dist/templates/index.js

@@ -1,2 +1,2 @@
-import { $ as toTemplateDataFrame, $t as bioTemplatePacks, A as toInstrumentRunColumns, At as createTimeCourseTemplate, B as toQpcrRows, Bt as validateFlowCytometryPanelData, C as toCalibrationCurveDataFrame, Ct as createQpcrExpressionCollection, D as toFlowPanelColumns, Dt as createSampleSheetTemplate, E as toDoseLayoutState, Et as createSamplePrepTemplate, F as toProtocolDataFrame, Ft as extractTemplateCollection, G as toReagentRows, Gt as validateReagentListData, H as toReagentColumns, Ht as validatePlateMapData, I as toProtocolRows, It as getTemplateData, J as toSampleOptions, Jt as validateTimeCourseData, K as toSampleColumns, Kt as validateSamplePrepData, L as toProtocolSteps, Lt as validateAssayMatrixData, M as toInstrumentRunRows, Mt as createWesternBlotAssayCollection, N as toPlateMapEditorState, Nt as ensureTemplateEnvelope, O as toFlowPanelDataFrame, Ot as createTemplateCollection, P as toProtocolColumns, Pt as ensureTemplateFromCollection, Q as toSampleRows, Qt as searchBioTemplatePresets, R as toQpcrColumns, Rt as validateCalibrationCurveData, S as toCalibrationCurveColumns, St as createProtocolStepsTemplate, T as toDoseConditions, Tt as createReagentListTemplate, U as toReagentDataFrame, Ut as validateProtocolStepsData, V as toQpcrWellPlateWells, Vt as validateInstrumentRunData, W as toReagentListItems, Wt as validateQpcrPlateData, X as toSamplePrepDataFrame, Xt as getBioTemplatePresetInfo, Y as toSamplePrepColumns, Yt as bioTemplatePresets, Z as toSamplePrepRows, Zt as listBioTemplatePresets, _ as toBioTemplateComponentSnippets, _t as createFlowCytometryAssayCollection, a as getBioTemplateControlDefaults, an as listBioTemplateCatalog, at as toWellPlateWells, b as toAssayMatrixDataFrame, bt as createLcmsBatchCollection, c as listBioTemplatePresetControlSchemas, ct as bioTemplatePresetControlValuesToOptions, d as getBioTemplateComponentProps, dt as createBioTemplatePresetCollection, en as getBioTemplatePackInfo, et as toTimeCourseColumns, f as listBioTemplateComponentBindings, ft as createBioTemplatePresetCollectionFromControls, g as toBioTemplateComponentPropsById, gt as createElisaAssayCollection, h as toBioTemplateComponentPropsByComponent, ht as createDoseResponseTemplate, i as createBioTemplateControlToolkit, in as getBioTemplateInfo, it as toWellMapArray, j as toInstrumentRunDataFrame, jt as createWellPlateScreenCollection, k as toFlowPanelRows, kt as createTemplateEnvelope, l as requireBioTemplateControlSchema, lt as createAssayMatrixTemplate, m as toBioTemplateComponentProps, mt as createDefaultBioTemplate, n as bioTemplateControlsToSectionFormSchemas, nn as searchBioTemplatePacks, nt as toTimeCourseRows, o as getBioTemplateControlSchema, on as searchBioTemplateCatalog, ot as TEMPLATE_COLLECTION_KEY, p as toBioTemplateComponentImports, pt as createCalibrationCurveTemplate, q as toSampleDataFrame, qt as validateSampleSheetData, r as bioTemplateControlsToSidebarPanels, rn as bioTemplateCatalog, rt as toTimeCourseSteps, s as listBioTemplateControlSchemas, st as assertTemplateEnvelope, t as bioTemplateControlsToFormSchema, tn as listBioTemplatePacks, tt as toTimeCourseDataFrame, u as getBioTemplateComponentBindings, ut as createBioTemplatePackCollection, v as toBioTemplateComponentUsage, vt as createFlowCytometryPanelTemplate, w as toCalibrationCurveRows, wt as createQpcrPlateTemplate, x as toAssayMatrixRows, xt as createPlateMapTemplate, y as toAssayMatrixColumns, yt as createInstrumentRunTemplate, z as toQpcrDataFrame, zt as validateDoseResponseData } from "../templates-50NPjaxL.js";
-export { TEMPLATE_COLLECTION_KEY, assertTemplateEnvelope, bioTemplateCatalog, bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, bioTemplatePacks, bioTemplatePresetControlValuesToOptions, bioTemplatePresets, createAssayMatrixTemplate, createBioTemplateControlToolkit, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createCalibrationCurveTemplate, createDefaultBioTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSamplePrepTemplate, createSampleSheetTemplate, createTemplateCollection, createTemplateEnvelope, createTimeCourseTemplate, createWellPlateScreenCollection, createWesternBlotAssayCollection, ensureTemplateEnvelope, ensureTemplateFromCollection, extractTemplateCollection, getBioTemplateComponentBindings, getBioTemplateComponentProps, getBioTemplateControlDefaults, getBioTemplateControlSchema, getBioTemplateInfo, getBioTemplatePackInfo, getBioTemplatePresetInfo, getTemplateData, listBioTemplateCatalog, listBioTemplateComponentBindings, listBioTemplateControlSchemas, listBioTemplatePacks, listBioTemplatePresetControlSchemas, listBioTemplatePresets, requireBioTemplateControlSchema, searchBioTemplateCatalog, searchBioTemplatePacks, searchBioTemplatePresets, toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData };
+import { $ as toSampleOptions, $t as validateTimeCourseData, A as toFlowPanelColumns, At as createReagentListTemplate, B as toProtocolDataFrame, Bt as extractTemplateCollection, C as toAssayMatrixRows, Ct as createFlowCytometryPanelTemplate, D as toCalibrationCurveRows, Dt as createProtocolStepsTemplate, E as toCalibrationCurveDataFrame, Et as createPlateMapTemplate, F as toInstrumentRunRows, Ft as createTimeCourseTemplate, G as toQpcrRows, Gt as validateFlowCytometryPanelData, H as toProtocolSteps, Ht as validateAssayMatrixData, I as toInstrumentRunScheduleEvents, It as createWellPlateScreenCollection, J as toReagentDataFrame, Jt as validateProtocolStepsData, K as toQpcrWellPlateWells, Kt as validateInstrumentRunData, L as toInstrumentRunSteps, Lt as createWesternBlotAssayCollection, M as toFlowPanelRows, Mt as createSampleSheetTemplate, N as toInstrumentRunColumns, Nt as createTemplateCollection, O as toDoseConditions, Ot as createQpcrExpressionCollection, P as toInstrumentRunDataFrame, Pt as createTemplateEnvelope, Q as toSampleDataFrame, Qt as validateSampleSheetData, R as toPlateMapEditorState, Rt as ensureTemplateEnvelope, S as toAssayMatrixDataFrame, St as createFlowCytometryAssayCollection, T as toCalibrationCurveColumns, Tt as createLcmsBatchCollection, U as toQpcrColumns, Ut as validateCalibrationCurveData, V as toProtocolRows, Vt as getTemplateData, W as toQpcrDataFrame, Wt as validateDoseResponseData, X as toReagentRows, Xt as validateReagentListData, Y as toReagentListItems, Yt as validateQpcrPlateData, Z as toSampleColumns, Zt as validateSamplePrepData, _ as toBioTemplateComponentPropsByComponent, _t as createBioTemplatePresetCollectionFromControls, a as getBioTemplateControlDefaults, an as getBioTemplatePackInfo, at as toTimeCourseColumns, b as toBioTemplateComponentUsage, bt as createDoseResponseTemplate, c as listBioTemplatePresetControlSchemas, cn as bioTemplateCatalog, ct as toTimeCourseSteps, d as getBioTemplateComponentProps, dn as searchBioTemplateCatalog, dt as TEMPLATE_COLLECTION_KEY, en as bioTemplatePresets, et as toSamplePrepColumns, f as listBioTemplateComponentBindings, ft as assertTemplateEnvelope, g as toBioTemplateComponentProps, gt as createBioTemplatePresetCollection, h as toBioTemplateComponentImports, ht as createBioTemplatePackCollection, i as createBioTemplateControlToolkit, in as bioTemplatePacks, it as toTemplateDataFrame, j as toFlowPanelDataFrame, jt as createSamplePrepTemplate, k as toDoseLayoutState, kt as createQpcrPlateTemplate, l as requireBioTemplateControlSchema, ln as getBioTemplateInfo, lt as toWellMapArray, m as toBioTemplateComponentBindingsById, mt as createAssayMatrixTemplate, n as bioTemplateControlsToSectionFormSchemas, nn as listBioTemplatePresets, nt as toSamplePrepRows, o as getBioTemplateControlSchema, on as listBioTemplatePacks, ot as toTimeCourseDataFrame, p as toBioTemplateComponentBindings, pt as bioTemplatePresetControlValuesToOptions, q as toReagentColumns, qt as validatePlateMapData, r as bioTemplateControlsToSidebarPanels, rn as searchBioTemplatePresets, rt as toSampleRows, s as listBioTemplateControlSchemas, sn as searchBioTemplatePacks, st as toTimeCourseRows, t as bioTemplateControlsToFormSchema, tn as getBioTemplatePresetInfo, tt as toSamplePrepDataFrame, u as getBioTemplateComponentBindings, un as listBioTemplateCatalog, ut as toWellPlateWells, v as toBioTemplateComponentPropsById, vt as createCalibrationCurveTemplate, w as toAssayMatrixSampleOptions, wt as createInstrumentRunTemplate, x as toAssayMatrixColumns, xt as createElisaAssayCollection, y as toBioTemplateComponentSnippets, yt as createDefaultBioTemplate, z as toProtocolColumns, zt as ensureTemplateFromCollection } from "../templates-Cyt0Suwf.js";
+export { TEMPLATE_COLLECTION_KEY, assertTemplateEnvelope, bioTemplateCatalog, bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, bioTemplatePacks, bioTemplatePresetControlValuesToOptions, bioTemplatePresets, createAssayMatrixTemplate, createBioTemplateControlToolkit, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createCalibrationCurveTemplate, createDefaultBioTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSamplePrepTemplate, createSampleSheetTemplate, createTemplateCollection, createTemplateEnvelope, createTimeCourseTemplate, createWellPlateScreenCollection, createWesternBlotAssayCollection, ensureTemplateEnvelope, ensureTemplateFromCollection, extractTemplateCollection, getBioTemplateComponentBindings, getBioTemplateComponentProps, getBioTemplateControlDefaults, getBioTemplateControlSchema, getBioTemplateInfo, getBioTemplatePackInfo, getBioTemplatePresetInfo, getTemplateData, listBioTemplateCatalog, listBioTemplateComponentBindings, listBioTemplateControlSchemas, listBioTemplatePacks, listBioTemplatePresetControlSchemas, listBioTemplatePresets, requireBioTemplateControlSchema, searchBioTemplateCatalog, searchBioTemplatePacks, searchBioTemplatePresets, toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData };

package/dist/templates/presets.d.ts

@@ -42,12 +42,12 @@ export declare const bioTemplatePresets: readonly [{
     readonly category: "bio-template-preset";
     readonly purpose: "Sample metadata, instrument queue, and assay matrix payloads for omics acquisition batches.";
     readonly templates: readonly ["sample-sheet", "instrument-run", "assay-matrix"];
-    readonly aliases: readonly ["lcms", "lc-ms", "mass spec batch", "omics batch", "run queue", "sequence table"];
+    readonly aliases: readonly ["lcms", "lc-ms", "mass spec batch", "omics batch", "metabolomics", "metabolism", "metabolite profiling", "run queue", "sequence table"];
     readonly python_import: "from mint_sdk.templates import create_lcms_batch_collection, save_template_collection";
     readonly python_example: "create_lcms_batch_collection(samples=[\"S001\", \"S002\"], features=[\"Glucose\", \"Lactate\"], instrument=\"LC-MS\")";
-    readonly frontend_import: "import { createLcmsBatchCollection, toInstrumentRunDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
-    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toInstrumentRunDataFrame", "toAssayMatrixDataFrame"];
-    readonly components: readonly ["DataFrame", "ScheduleCalendar", "ChartContainer", "SampleSelector"];
+    readonly frontend_import: "import { createLcmsBatchCollection, toAssayMatrixSampleOptions, toInstrumentRunDataFrame, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
+    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toInstrumentRunDataFrame", "toInstrumentRunSteps", "toInstrumentRunScheduleEvents", "toAssayMatrixDataFrame", "toAssayMatrixSampleOptions"];
+    readonly components: readonly ["DataFrame", "ExperimentTimeline", "ScheduleCalendar", "ChartContainer", "SampleSelector"];
 }, {
     readonly name: "elisa-assay";
     readonly label: "ELISA assay";

package/dist/templates/types.d.ts

@@ -1,4 +1,4 @@
-import { DataFrameColumn, PlateCondition, PlateMap, PlateMapEditorState, ProtocolStep, Reagent, SampleType, SelectOption, Well, WellPlateFormat } from '../types';
+import { DataFrameColumn, PlateCondition, PlateMap, PlateMapEditorState, ProtocolStep, Reagent, ScheduleEvent, SampleType, SelectOption, Well, WellPlateFormat } from '../types';
 export type TemplateKind = 'experiment-design';
 export type TemplateId = 'plate-map' | 'sample-sheet' | 'sample-prep' | 'dose-response' | 'calibration-curve' | 'time-course' | 'protocol-steps' | 'assay-matrix' | 'reagent-list' | 'flow-cytometry-panel' | 'instrument-run' | 'qpcr-plate';
 export type TemplatePresetId = 'wellplate-screen' | 'qpcr-expression' | 'lcms-batch' | 'elisa-assay' | 'flow-cytometry-assay' | 'western-blot-assay';
@@ -514,6 +514,7 @@ export type ProtocolDataFrameAdapterResult = DataFrameAdapterResult;
 export type AssayMatrixRowsAdapterResult = Array<Record<string, unknown>>;
 export type AssayMatrixColumnsAdapterResult = DataFrameColumn<Record<string, unknown>>[];
 export type AssayMatrixDataFrameAdapterResult = DataFrameAdapterResult;
+export type AssayMatrixSampleOptionsAdapterResult = SelectOption<string>[];
 export type ReagentListItemsAdapterResult = Reagent[];
 export type ReagentRowsAdapterResult = Array<Record<string, unknown>>;
 export type ReagentColumnsAdapterResult = DataFrameColumn<Record<string, unknown>>[];
@@ -524,6 +525,8 @@ export type FlowPanelDataFrameAdapterResult = DataFrameAdapterResult;
 export type InstrumentRunRowsAdapterResult = Array<Record<string, unknown>>;
 export type InstrumentRunColumnsAdapterResult = DataFrameColumn<Record<string, unknown>>[];
 export type InstrumentRunDataFrameAdapterResult = DataFrameAdapterResult;
+export type InstrumentRunStepsAdapterResult = ProtocolStep[];
+export type InstrumentRunScheduleEventsAdapterResult = ScheduleEvent[];
 export type QpcrRowsAdapterResult = Array<Record<string, unknown>>;
 export type QpcrColumnsAdapterResult = DataFrameColumn<Record<string, unknown>>[];
 export type QpcrDataFrameAdapterResult = DataFrameAdapterResult;