@morscherlab/mint-sdk 1.0.0-alpha.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (491) hide show
  1. package/README.md +326 -0
  2. package/dist/__stories__/experiment-helpers.d.ts +25 -0
  3. package/dist/__tests__/components/AppLayout.test.d.ts +1 -0
  4. package/dist/__tests__/components/AppSidebar.test.d.ts +1 -0
  5. package/dist/__tests__/components/AppTopBar.test.d.ts +1 -0
  6. package/dist/__tests__/components/BaseInput.test.d.ts +1 -0
  7. package/dist/__tests__/components/BasePill.test.d.ts +1 -0
  8. package/dist/__tests__/components/Calendar.test.d.ts +1 -0
  9. package/dist/__tests__/components/CollapsibleCard.test.d.ts +1 -0
  10. package/dist/__tests__/components/DataFrame.test.d.ts +1 -0
  11. package/dist/__tests__/components/DropdownButton.test.d.ts +1 -0
  12. package/dist/__tests__/composables/formBuilderRegistry.test.d.ts +1 -0
  13. package/dist/__tests__/composables/useAppExperiment.test.d.ts +1 -0
  14. package/dist/__tests__/composables/useAuth.test.d.ts +1 -0
  15. package/dist/__tests__/composables/useAutoGroup.test.d.ts +1 -0
  16. package/dist/__tests__/composables/useExperimentData.test.d.ts +13 -0
  17. package/dist/__tests__/composables/useExperimentSave.test.d.ts +1 -0
  18. package/dist/__tests__/composables/useForm.test.d.ts +1 -0
  19. package/dist/__tests__/composables/useFormBuilder.test.d.ts +1 -0
  20. package/dist/__tests__/composables/usePlatformContext.test.d.ts +1 -0
  21. package/dist/__tests__/composables/usePluginApi.test.d.ts +13 -0
  22. package/dist/__tests__/composables/usePluginConfig.test.d.ts +14 -0
  23. package/dist/__tests__/utils/color.test.d.ts +1 -0
  24. package/dist/auth-BYmxZdJl.js +297 -0
  25. package/dist/auth-BYmxZdJl.js.map +1 -0
  26. package/dist/components/AlertBox.vue.d.ts +34 -0
  27. package/dist/components/AppAvatarMenu.vue.d.ts +58 -0
  28. package/dist/components/AppContainer.vue.d.ts +28 -0
  29. package/dist/components/AppLayout.vue.d.ts +31 -0
  30. package/dist/components/AppPageSelector.vue.d.ts +43 -0
  31. package/dist/components/AppPillNav.vue.d.ts +11 -0
  32. package/dist/components/AppPluginSwitcher.vue.d.ts +38 -0
  33. package/dist/components/AppSidebar.vue.d.ts +47 -0
  34. package/dist/components/AppTopBar.vue.d.ts +111 -0
  35. package/dist/components/AuditTrail.vue.d.ts +38 -0
  36. package/dist/components/AutoGroupModal.vue.d.ts +124 -0
  37. package/dist/components/Avatar.vue.d.ts +14 -0
  38. package/dist/components/BaseButton.vue.d.ts +37 -0
  39. package/dist/components/BaseCheckbox.vue.d.ts +17 -0
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  42. package/dist/components/BasePill.vue.d.ts +57 -0
  43. package/dist/components/BaseRadioGroup.vue.d.ts +21 -0
  44. package/dist/components/BaseSelect.vue.d.ts +20 -0
  45. package/dist/components/BaseSlider.vue.d.ts +22 -0
  46. package/dist/components/BaseTabs.vue.d.ts +14 -0
  47. package/dist/components/BaseTextarea.vue.d.ts +30 -0
  48. package/dist/components/BaseToggle.vue.d.ts +19 -0
  49. package/dist/components/BatchProgressList.vue.d.ts +43 -0
  50. package/dist/components/Breadcrumb.vue.d.ts +33 -0
  51. package/dist/components/Calendar.vue.d.ts +107 -0
  52. package/dist/components/ChartContainer.vue.d.ts +31 -0
  53. package/dist/components/ChemicalFormula.vue.d.ts +8 -0
  54. package/dist/components/CollapsibleCard.vue.d.ts +41 -0
  55. package/dist/components/ColorSlider.vue.d.ts +34 -0
  56. package/dist/components/ConcentrationInput.vue.d.ts +25 -0
  57. package/dist/components/ConfirmDialog.vue.d.ts +42 -0
  58. package/dist/components/DataFrame.vue.d.ts +107 -0
  59. package/dist/components/DatePicker.vue.d.ts +25 -0
  60. package/dist/components/DateTimePicker.vue.d.ts +30 -0
  61. package/dist/components/Divider.vue.d.ts +14 -0
  62. package/dist/components/DoseCalculator.vue.d.ts +19 -0
  63. package/dist/components/DropdownButton.vue.d.ts +47 -0
  64. package/dist/components/EmptyState.vue.d.ts +36 -0
  65. package/dist/components/ExperimentCodeBadge.vue.d.ts +14 -0
  66. package/dist/components/ExperimentDataViewer.vue.d.ts +29 -0
  67. package/dist/components/ExperimentPopover.vue.d.ts +32 -0
  68. package/dist/components/ExperimentSelectorModal.vue.d.ts +28 -0
  69. package/dist/components/ExperimentTimeline.vue.d.ts +44 -0
  70. package/dist/components/FileUploader.vue.d.ts +40 -0
  71. package/dist/components/FitPanel.vue.d.ts +46 -0
  72. package/dist/components/FormActions.vue.d.ts +33 -0
  73. package/dist/components/FormBuilder.vue.d.ts +287 -0
  74. package/dist/components/FormField.vue.d.ts +28 -0
  75. package/dist/components/FormFieldRenderer.vue.d.ts +31 -0
  76. package/dist/components/FormSection.vue.d.ts +43 -0
  77. package/dist/components/FormulaInput.vue.d.ts +25 -0
  78. package/dist/components/GroupAssigner.vue.d.ts +25 -0
  79. package/dist/components/GroupingModal.vue.d.ts +12 -0
  80. package/dist/components/IconButton.vue.d.ts +34 -0
  81. package/dist/components/LoadingSpinner.vue.d.ts +12 -0
  82. package/dist/components/MoleculeInput.vue.d.ts +27 -0
  83. package/dist/components/MultiSelect.vue.d.ts +19 -0
  84. package/dist/components/NumberInput.vue.d.ts +22 -0
  85. package/dist/components/PlateMapEditor.vue.d.ts +50 -0
  86. package/dist/components/ProgressBar.vue.d.ts +23 -0
  87. package/dist/components/ProtocolStepEditor.vue.d.ts +24 -0
  88. package/dist/components/RackEditor.vue.d.ts +40 -0
  89. package/dist/components/ReagentEditor.vue.d.ts +30 -0
  90. package/dist/components/ReagentList.vue.d.ts +32 -0
  91. package/dist/components/ResourceCard.vue.d.ts +50 -0
  92. package/dist/components/SampleHierarchyTree.vue.d.ts +26 -0
  93. package/dist/components/SampleLegend.vue.d.ts +32 -0
  94. package/dist/components/SampleSelector.vue.d.ts +29 -0
  95. package/dist/components/ScheduleCalendar.vue.d.ts +110 -0
  96. package/dist/components/ScientificNumber.vue.d.ts +14 -0
  97. package/dist/components/SegmentedControl.vue.d.ts +20 -0
  98. package/dist/components/SequenceInput.vue.d.ts +54 -0
  99. package/dist/components/SettingsButton.vue.d.ts +30 -0
  100. package/dist/components/SettingsModal.vue.d.ts +36 -0
  101. package/dist/components/Skeleton.vue.d.ts +11 -0
  102. package/dist/components/StatusIndicator.vue.d.ts +13 -0
  103. package/dist/components/StepWizard.vue.d.ts +65 -0
  104. package/dist/components/TagsInput.vue.d.ts +39 -0
  105. package/dist/components/ThemeToggle.vue.d.ts +7 -0
  106. package/dist/components/TimePicker.vue.d.ts +29 -0
  107. package/dist/components/TimeRangeInput.vue.d.ts +27 -0
  108. package/dist/components/ToastNotification.vue.d.ts +2 -0
  109. package/dist/components/Tooltip.vue.d.ts +35 -0
  110. package/dist/components/UnitInput.vue.d.ts +39 -0
  111. package/dist/components/WellEditPopup.vue.d.ts +25 -0
  112. package/dist/components/WellPlate.vue.d.ts +73 -0
  113. package/dist/components/index.d.ts +87 -0
  114. package/dist/components/index.js +3 -0
  115. package/dist/components-CKf-UpGi.js +15089 -0
  116. package/dist/components-CKf-UpGi.js.map +1 -0
  117. package/dist/composables/experiment-utils.d.ts +8 -0
  118. package/dist/composables/formBuilderRegistry.d.ts +13 -0
  119. package/dist/composables/index.d.ts +28 -0
  120. package/dist/composables/index.js +3 -0
  121. package/dist/composables/useApi.d.ts +20 -0
  122. package/dist/composables/useAppExperiment.d.ts +37 -0
  123. package/dist/composables/useAsync.d.ts +128 -0
  124. package/dist/composables/useAuth.d.ts +47 -0
  125. package/dist/composables/useAutoGroup.d.ts +106 -0
  126. package/dist/composables/useChemicalFormula.d.ts +21 -0
  127. package/dist/composables/useConcentrationUnits.d.ts +29 -0
  128. package/dist/composables/useDoseCalculator.d.ts +58 -0
  129. package/dist/composables/useExperimentData.d.ts +18 -0
  130. package/dist/composables/useExperimentSave.d.ts +36 -0
  131. package/dist/composables/useExperimentSelector.d.ts +30 -0
  132. package/dist/composables/useForm.d.ts +92 -0
  133. package/dist/composables/useFormBuilder.d.ts +24 -0
  134. package/dist/composables/usePasskey.d.ts +10 -0
  135. package/dist/composables/usePlatformContext.d.ts +131 -0
  136. package/dist/composables/usePluginApi.d.ts +29 -0
  137. package/dist/composables/usePluginConfig.d.ts +13 -0
  138. package/dist/composables/useProtocolTemplates.d.ts +44 -0
  139. package/dist/composables/useRackEditor.d.ts +31 -0
  140. package/dist/composables/useReagentSeries.d.ts +23 -0
  141. package/dist/composables/useScheduleDrag.d.ts +78 -0
  142. package/dist/composables/useSequenceUtils.d.ts +14 -0
  143. package/dist/composables/useTheme.d.ts +8 -0
  144. package/dist/composables/useTimeUtils.d.ts +29 -0
  145. package/dist/composables/useToast.d.ts +22 -0
  146. package/dist/composables/useWellPlateEditor.d.ts +33 -0
  147. package/dist/composables-D0QfFzq1.js +805 -0
  148. package/dist/composables-D0QfFzq1.js.map +1 -0
  149. package/dist/histoire.setup.d.ts +1 -0
  150. package/dist/index.d.ts +6 -0
  151. package/dist/index.js +7 -0
  152. package/dist/install.d.ts +16 -0
  153. package/dist/install.js +23 -0
  154. package/dist/install.js.map +1 -0
  155. package/dist/stores/auth.d.ts +146 -0
  156. package/dist/stores/index.d.ts +2 -0
  157. package/dist/stores/index.js +2 -0
  158. package/dist/stores/settings.d.ts +75 -0
  159. package/dist/styles.css +29728 -0
  160. package/dist/tailwind.preset.d.ts +58 -0
  161. package/dist/tailwind.preset.js +66 -0
  162. package/dist/tailwind.preset.js.map +1 -0
  163. package/dist/types/auth.d.ts +42 -0
  164. package/dist/types/auto-group.d.ts +34 -0
  165. package/dist/types/components.d.ts +528 -0
  166. package/dist/types/form-builder.d.ts +167 -0
  167. package/dist/types/index.d.ts +5 -0
  168. package/dist/types/index.js +0 -0
  169. package/dist/types/platform.d.ts +75 -0
  170. package/dist/useScheduleDrag-DAJueTbK.js +7181 -0
  171. package/dist/useScheduleDrag-DAJueTbK.js.map +1 -0
  172. package/dist/utils/color.d.ts +24 -0
  173. package/package.json +114 -0
  174. package/src/__stories__/experiment-helpers.ts +83 -0
  175. package/src/__tests__/components/AppLayout.test.ts +163 -0
  176. package/src/__tests__/components/AppSidebar.test.ts +292 -0
  177. package/src/__tests__/components/AppTopBar.test.ts +683 -0
  178. package/src/__tests__/components/BaseInput.test.ts +99 -0
  179. package/src/__tests__/components/BasePill.test.ts +291 -0
  180. package/src/__tests__/components/Calendar.test.ts +566 -0
  181. package/src/__tests__/components/CollapsibleCard.test.ts +524 -0
  182. package/src/__tests__/components/DataFrame.test.ts +767 -0
  183. package/src/__tests__/components/DropdownButton.test.ts +471 -0
  184. package/src/__tests__/composables/formBuilderRegistry.test.ts +187 -0
  185. package/src/__tests__/composables/useAppExperiment.test.ts +560 -0
  186. package/src/__tests__/composables/useAuth.test.ts +188 -0
  187. package/src/__tests__/composables/useAutoGroup.test.ts +860 -0
  188. package/src/__tests__/composables/useExperimentData.test.ts +127 -0
  189. package/src/__tests__/composables/useExperimentSave.test.ts +347 -0
  190. package/src/__tests__/composables/useForm.test.ts +205 -0
  191. package/src/__tests__/composables/useFormBuilder.test.ts +917 -0
  192. package/src/__tests__/composables/usePlatformContext.test.ts +116 -0
  193. package/src/__tests__/composables/usePluginApi.test.ts +81 -0
  194. package/src/__tests__/composables/usePluginConfig.test.ts +176 -0
  195. package/src/__tests__/utils/color.test.ts +96 -0
  196. package/src/components/AlertBox.story.vue +204 -0
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@@ -0,0 +1,161 @@
1
+ <script setup lang="ts">
2
+ /** Card displaying a lab resource with availability status, specs, tags, and a book action. */
3
+ import { computed } from 'vue'
4
+ import BasePill from './BasePill.vue'
5
+ import type { ResourceStatus, ResourceSpec } from '../types/components'
6
+
7
+ interface Props {
8
+ name: string
9
+ description?: string
10
+ status?: ResourceStatus
11
+ image?: string
12
+ location?: string
13
+ specs?: ResourceSpec[]
14
+ tags?: string[]
15
+ nextAvailable?: string
16
+ showBookAction?: boolean
17
+ compact?: boolean
18
+ size?: 'sm' | 'md' | 'lg'
19
+ statusLabel?: string
20
+ }
21
+
22
+ const props = withDefaults(defineProps<Props>(), {
23
+ status: 'available',
24
+ specs: () => [],
25
+ tags: () => [],
26
+ showBookAction: true,
27
+ compact: false,
28
+ size: 'md',
29
+ })
30
+
31
+ const emit = defineEmits<{
32
+ book: []
33
+ click: []
34
+ }>()
35
+
36
+ const defaultStatusLabels: Record<ResourceStatus, string> = {
37
+ 'available': 'Available',
38
+ 'in-use': 'In Use',
39
+ 'maintenance': 'Maintenance',
40
+ 'offline': 'Offline',
41
+ }
42
+
43
+ const displayStatusLabel = computed(() => props.statusLabel ?? defaultStatusLabels[props.status])
44
+
45
+ const cardClasses = computed(() => [
46
+ 'mld-resource-card',
47
+ `mld-resource-card--${props.size}`,
48
+ { 'mld-resource-card--compact': props.compact },
49
+ ])
50
+
51
+ function handleBook(event: MouseEvent) {
52
+ event.stopPropagation()
53
+ emit('book')
54
+ }
55
+
56
+ function handleClick() {
57
+ emit('click')
58
+ }
59
+ </script>
60
+
61
+ <template>
62
+ <!-- Compact mode -->
63
+ <div v-if="compact" :class="cardClasses" @click="handleClick">
64
+ <slot name="status">
65
+ <span :class="['mld-resource-card__status-dot', `mld-resource-card__status-dot--${status}`]" />
66
+ </slot>
67
+
68
+ <span class="mld-resource-card__name">{{ name }}</span>
69
+
70
+ <span :class="['mld-resource-card__status-label', `mld-resource-card__status-label--${status}`]">
71
+ {{ displayStatusLabel }}
72
+ </span>
73
+
74
+ <slot name="action">
75
+ <button
76
+ v-if="showBookAction"
77
+ type="button"
78
+ class="mld-resource-card__book-btn"
79
+ @click="handleBook"
80
+ >
81
+ Book
82
+ </button>
83
+ </slot>
84
+ </div>
85
+
86
+ <!-- Card mode -->
87
+ <div v-else :class="cardClasses" @click="handleClick">
88
+ <div class="mld-resource-card__content">
89
+ <div class="mld-resource-card__header">
90
+ <!-- Image / fallback -->
91
+ <div class="mld-resource-card__image">
92
+ <slot name="image">
93
+ <img v-if="image" :src="image" :alt="name" />
94
+ <div v-else class="mld-resource-card__image-fallback">
95
+ <svg fill="none" stroke="currentColor" viewBox="0 0 24 24">
96
+ <path stroke-linecap="round" stroke-linejoin="round" stroke-width="1.5" d="M9.75 3.104v5.714a2.25 2.25 0 01-.659 1.591L5 14.5M9.75 3.104c-.251.023-.501.05-.75.082m.75-.082a24.301 24.301 0 014.5 0m0 0v5.714a2.25 2.25 0 00.659 1.591L19 14.5M14.25 3.104c.251.023.501.05.75.082M19 14.5l-2.47 2.47a2.25 2.25 0 00-.659 1.59V21a.75.75 0 01-.75.75h-6.24a.75.75 0 01-.75-.75v-2.44a2.25 2.25 0 00-.659-1.59L5 14.5m14 0h-2.25m-10.5 0H4" />
97
+ </svg>
98
+ </div>
99
+ </slot>
100
+ </div>
101
+
102
+ <!-- Body -->
103
+ <div class="mld-resource-card__body">
104
+ <div class="mld-resource-card__title-row">
105
+ <h3 class="mld-resource-card__name">{{ name }}</h3>
106
+
107
+ <slot name="status">
108
+ <div class="mld-resource-card__status">
109
+ <span :class="['mld-resource-card__status-dot', `mld-resource-card__status-dot--${status}`]" />
110
+ <span class="mld-resource-card__status-label">{{ displayStatusLabel }}</span>
111
+ </div>
112
+ </slot>
113
+ </div>
114
+
115
+ <p v-if="description" class="mld-resource-card__description">{{ description }}</p>
116
+
117
+ <p v-if="location" class="mld-resource-card__location">Location: {{ location }}</p>
118
+
119
+ <p v-if="nextAvailable" class="mld-resource-card__next-available">Next available: {{ nextAvailable }}</p>
120
+ </div>
121
+ </div>
122
+
123
+ <!-- Specs -->
124
+ <div v-if="specs.length > 0 || $slots.specs" class="mld-resource-card__specs">
125
+ <slot name="specs">
126
+ <div v-for="spec in specs" :key="spec.label" class="mld-resource-card__spec">
127
+ <span class="mld-resource-card__spec-label">{{ spec.label }}</span>
128
+ <span class="mld-resource-card__spec-value">{{ spec.value }}</span>
129
+ </div>
130
+ </slot>
131
+ </div>
132
+
133
+ <!-- Tags + action -->
134
+ <div v-if="tags.length > 0 || showBookAction || $slots.action" class="mld-resource-card__footer">
135
+ <div class="mld-resource-card__tags">
136
+ <BasePill v-for="tag in tags" :key="tag" size="sm">{{ tag }}</BasePill>
137
+ </div>
138
+
139
+ <div class="mld-resource-card__action">
140
+ <slot name="action">
141
+ <button
142
+ v-if="showBookAction"
143
+ type="button"
144
+ class="mld-resource-card__book-btn"
145
+ @click="handleBook"
146
+ >
147
+ Book Now
148
+ <svg width="12" height="12" fill="none" stroke="currentColor" viewBox="0 0 24 24">
149
+ <path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" />
150
+ </svg>
151
+ </button>
152
+ </slot>
153
+ </div>
154
+ </div>
155
+ </div>
156
+ </div>
157
+ </template>
158
+
159
+ <style>
160
+ @import '../styles/components/resource-card.css';
161
+ </style>
@@ -0,0 +1,161 @@
1
+ <script setup lang="ts">
2
+ import SampleHierarchyTree from './SampleHierarchyTree.vue'
3
+ import type { TreeNode } from '../types'
4
+
5
+ const mockNodes: TreeNode[] = [
6
+ {
7
+ id: 'study-1',
8
+ label: 'Drug Resistance Study',
9
+ type: 'study',
10
+ badge: 3,
11
+ badgeVariant: 'default',
12
+ children: [
13
+ {
14
+ id: 'exp-1',
15
+ label: 'Cisplatin Dose Response',
16
+ type: 'experiment',
17
+ children: [
18
+ {
19
+ id: 'plate-1',
20
+ label: 'Plate 1 (96-well)',
21
+ type: 'plate',
22
+ badge: 96,
23
+ children: [
24
+ { id: 'sample-1', label: 'HeLa Control', type: 'sample' },
25
+ { id: 'sample-2', label: 'HeLa 0.1 uM', type: 'sample' },
26
+ { id: 'sample-3', label: 'HeLa 1.0 uM', type: 'sample' },
27
+ { id: 'sample-4', label: 'HeLa 10 uM', type: 'sample' },
28
+ ],
29
+ },
30
+ {
31
+ id: 'plate-2',
32
+ label: 'Plate 2 (96-well)',
33
+ type: 'plate',
34
+ badge: 96,
35
+ children: [
36
+ { id: 'sample-5', label: 'MCF-7 Control', type: 'sample' },
37
+ { id: 'sample-6', label: 'MCF-7 0.1 uM', type: 'sample' },
38
+ { id: 'sample-7', label: 'MCF-7 1.0 uM', type: 'sample' },
39
+ ],
40
+ },
41
+ ],
42
+ },
43
+ {
44
+ id: 'exp-2',
45
+ label: 'Combination Treatment',
46
+ type: 'experiment',
47
+ children: [
48
+ {
49
+ id: 'plate-3',
50
+ label: 'Combo Plate A',
51
+ type: 'plate',
52
+ badge: 54,
53
+ },
54
+ ],
55
+ },
56
+ {
57
+ id: 'exp-3',
58
+ label: 'Cell Line Characterization',
59
+ type: 'experiment',
60
+ children: [
61
+ {
62
+ id: 'cell-1',
63
+ label: 'HeLa',
64
+ type: 'cell_line',
65
+ children: [
66
+ { id: 'p-1', label: 'Passage 12', type: 'passage' },
67
+ { id: 'p-2', label: 'Passage 15', type: 'passage', badge: 'low', badgeVariant: 'warning' },
68
+ ],
69
+ },
70
+ {
71
+ id: 'cell-2',
72
+ label: 'MCF-7',
73
+ type: 'cell_line',
74
+ children: [
75
+ { id: 'clone-1', label: 'Clone A', type: 'clone' },
76
+ { id: 'clone-2', label: 'Clone B', type: 'clone', badge: 'resistant', badgeVariant: 'error' },
77
+ ],
78
+ },
79
+ ],
80
+ },
81
+ ],
82
+ },
83
+ ]
84
+
85
+ function initState() {
86
+ return {
87
+ nodes: mockNodes,
88
+ expandAll: false,
89
+ showIcons: true,
90
+ showCounts: true,
91
+ size: 'md' as const,
92
+ }
93
+ }
94
+ </script>
95
+
96
+ <template>
97
+ <Story title="Lab/SampleHierarchyTree">
98
+ <Variant title="Playground" :init-state="initState">
99
+ <template #default="{ state }">
100
+ <div style="padding: 2rem; max-width: 500px;">
101
+ <SampleHierarchyTree
102
+ :nodes="state.nodes"
103
+ :expand-all="state.expandAll"
104
+ :show-icons="state.showIcons"
105
+ :show-counts="state.showCounts"
106
+ :size="state.size"
107
+ />
108
+ </div>
109
+ </template>
110
+ <template #controls="{ state }">
111
+ <HstCheckbox v-model="state.expandAll" title="Expand All" />
112
+ <HstCheckbox v-model="state.showIcons" title="Show Icons" />
113
+ <HstCheckbox v-model="state.showCounts" title="Show Counts" />
114
+ <HstSelect
115
+ v-model="state.size"
116
+ title="Size"
117
+ :options="[
118
+ { value: 'sm', label: 'Small' },
119
+ { value: 'md', label: 'Medium' },
120
+ { value: 'lg', label: 'Large' },
121
+ ]"
122
+ />
123
+ </template>
124
+ </Variant>
125
+
126
+ <Variant title="Expanded">
127
+ <div style="padding: 2rem; max-width: 500px;">
128
+ <SampleHierarchyTree
129
+ :nodes="mockNodes"
130
+ expand-all
131
+ />
132
+ </div>
133
+ </Variant>
134
+
135
+ <Variant title="No Icons">
136
+ <div style="padding: 2rem; max-width: 500px;">
137
+ <SampleHierarchyTree
138
+ :nodes="mockNodes"
139
+ :show-icons="false"
140
+ expand-all
141
+ />
142
+ </div>
143
+ </Variant>
144
+
145
+ <Variant title="Small">
146
+ <div style="padding: 2rem; max-width: 400px;">
147
+ <SampleHierarchyTree
148
+ :nodes="mockNodes"
149
+ size="sm"
150
+ expand-all
151
+ />
152
+ </div>
153
+ </Variant>
154
+
155
+ <Variant title="Empty">
156
+ <div style="padding: 2rem; max-width: 500px;">
157
+ <SampleHierarchyTree :nodes="[]" />
158
+ </div>
159
+ </Variant>
160
+ </Story>
161
+ </template>
@@ -0,0 +1,256 @@
1
+ <script setup lang="ts">
2
+ /** Collapsible tree visualizing the biological sample hierarchy (study → experiment → plate → sample → cell line → passage → clone → treatment). */
3
+ import { ref, watch, type VNode } from 'vue'
4
+ import { h, Transition } from 'vue'
5
+ import type { TreeNodeType, BadgeVariant, TreeNode } from '../types'
6
+
7
+ interface Props {
8
+ nodes: TreeNode[]
9
+ defaultExpandedIds?: string[]
10
+ expandAll?: boolean
11
+ showIcons?: boolean
12
+ showCounts?: boolean
13
+ maxDepth?: number
14
+ size?: 'sm' | 'md' | 'lg'
15
+ }
16
+
17
+ const props = withDefaults(defineProps<Props>(), {
18
+ defaultExpandedIds: () => [],
19
+ expandAll: false,
20
+ showIcons: true,
21
+ showCounts: true,
22
+ size: 'md',
23
+ })
24
+
25
+ const emit = defineEmits<{
26
+ 'node-click': [node: TreeNode]
27
+ 'expand': [nodeId: string]
28
+ 'collapse': [nodeId: string]
29
+ }>()
30
+
31
+ // Track expanded nodes
32
+ const expandedIds = ref<Set<string>>(new Set(props.defaultExpandedIds))
33
+
34
+ // Default icons by type (Lucide SVG paths - arrays to support multi-path icons)
35
+ interface IconElement {
36
+ tag: 'path' | 'circle' | 'rect'
37
+ attrs: Record<string, string | number>
38
+ }
39
+
40
+ const typeIcons: Record<TreeNodeType, IconElement[]> = {
41
+ study: [
42
+ { tag: 'path', attrs: { d: 'M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z' } },
43
+ ],
44
+ experiment: [
45
+ { tag: 'path', attrs: { d: 'M14 2v6a2 2 0 0 0 .245.96l5.51 10.08A2 2 0 0 1 18 22H6a2 2 0 0 1-1.755-2.96l5.51-10.08A2 2 0 0 0 10 8V2' } },
46
+ { tag: 'path', attrs: { d: 'M6.453 15h11.094' } },
47
+ { tag: 'path', attrs: { d: 'M8.5 2h7' } },
48
+ ],
49
+ plate: [
50
+ { tag: 'rect', attrs: { width: '7', height: '7', x: '3', y: '3', rx: '1' } },
51
+ { tag: 'rect', attrs: { width: '7', height: '7', x: '14', y: '3', rx: '1' } },
52
+ { tag: 'rect', attrs: { width: '7', height: '7', x: '14', y: '14', rx: '1' } },
53
+ { tag: 'rect', attrs: { width: '7', height: '7', x: '3', y: '14', rx: '1' } },
54
+ ],
55
+ sample: [
56
+ { tag: 'circle', attrs: { cx: '12', cy: '12', r: '10' } },
57
+ { tag: 'path', attrs: { d: 'M12 6v6l4 2' } },
58
+ ],
59
+ cell_line: [
60
+ { tag: 'path', attrs: { d: 'M15 14c.2-1 .7-1.7 1.5-2.5 1-.9 1.5-2.2 1.5-3.5A6 6 0 0 0 6 8c0 1 .2 2.2 1.5 3.5.7.7 1.3 1.5 1.5 2.5' } },
61
+ { tag: 'path', attrs: { d: 'M9 18h6' } },
62
+ { tag: 'path', attrs: { d: 'M10 22h4' } },
63
+ ],
64
+ passage: [
65
+ { tag: 'path', attrs: { d: 'M3 5h.01' } },
66
+ { tag: 'path', attrs: { d: 'M3 12h.01' } },
67
+ { tag: 'path', attrs: { d: 'M3 19h.01' } },
68
+ { tag: 'path', attrs: { d: 'M8 5h13' } },
69
+ { tag: 'path', attrs: { d: 'M8 12h13' } },
70
+ { tag: 'path', attrs: { d: 'M8 19h13' } },
71
+ ],
72
+ clone: [
73
+ { tag: 'rect', attrs: { width: '14', height: '14', x: '8', y: '8', rx: '2', ry: '2' } },
74
+ { tag: 'path', attrs: { d: 'M4 16c-1.1 0-2-.9-2-2V4c0-1.1.9-2 2-2h10c1.1 0 2 .9 2 2' } },
75
+ ],
76
+ treatment: [
77
+ { tag: 'path', attrs: { d: 'M14 2v6a2 2 0 0 0 .245.96l5.51 10.08A2 2 0 0 1 18 22H6a2 2 0 0 1-1.755-2.96l5.51-10.08A2 2 0 0 0 10 8V2' } },
78
+ { tag: 'path', attrs: { d: 'M6.453 15h11.094' } },
79
+ { tag: 'path', attrs: { d: 'M8.5 2h7' } },
80
+ ],
81
+ folder: [
82
+ { tag: 'path', attrs: { d: 'M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z' } },
83
+ ],
84
+ custom: [
85
+ { tag: 'path', attrs: { d: 'M9.671 4.136a2.34 2.34 0 0 1 4.659 0 2.34 2.34 0 0 0 3.319 1.915 2.34 2.34 0 0 1 2.33 4.033 2.34 2.34 0 0 0 0 3.831 2.34 2.34 0 0 1-2.33 4.033 2.34 2.34 0 0 0-3.319 1.915 2.34 2.34 0 0 1-4.659 0 2.34 2.34 0 0 0-3.32-1.915 2.34 2.34 0 0 1-2.33-4.033 2.34 2.34 0 0 0 0-3.831A2.34 2.34 0 0 1 6.35 6.051a2.34 2.34 0 0 0 3.319-1.915' } },
86
+ { tag: 'circle', attrs: { cx: '12', cy: '12', r: '3' } },
87
+ ],
88
+ }
89
+
90
+ // Collect all node IDs for expand all
91
+ function collectAllIds(nodes: TreeNode[]): string[] {
92
+ const ids: string[] = []
93
+ function traverse(node: TreeNode) {
94
+ ids.push(node.id)
95
+ if (node.children) {
96
+ node.children.forEach(traverse)
97
+ }
98
+ }
99
+ nodes.forEach(traverse)
100
+ return ids
101
+ }
102
+
103
+ // Watch for expandAll changes
104
+ watch(
105
+ () => props.expandAll,
106
+ (shouldExpandAll) => {
107
+ if (shouldExpandAll) {
108
+ expandedIds.value = new Set(collectAllIds(props.nodes))
109
+ } else {
110
+ expandedIds.value = new Set(props.defaultExpandedIds)
111
+ }
112
+ },
113
+ { immediate: true }
114
+ )
115
+
116
+ function isExpanded(nodeId: string): boolean {
117
+ return expandedIds.value.has(nodeId)
118
+ }
119
+
120
+ function toggleExpand(node: TreeNode) {
121
+ if (isExpanded(node.id)) {
122
+ expandedIds.value.delete(node.id)
123
+ emit('collapse', node.id)
124
+ } else {
125
+ expandedIds.value.add(node.id)
126
+ emit('expand', node.id)
127
+ }
128
+ }
129
+
130
+ function handleNodeClick(node: TreeNode) {
131
+ emit('node-click', node)
132
+ }
133
+
134
+ function getIconElements(node: TreeNode): IconElement[] {
135
+ if (node.icon) return [{ tag: 'path', attrs: { d: node.icon } }]
136
+ return typeIcons[node.type || 'custom']
137
+ }
138
+
139
+ function getBadgeContent(node: TreeNode): string | number | undefined {
140
+ if (node.badge !== undefined) return node.badge
141
+ if (props.showCounts && node.children && node.children.length > 0) {
142
+ return node.children.length
143
+ }
144
+ return undefined
145
+ }
146
+
147
+ function getBadgeVariant(node: TreeNode): BadgeVariant {
148
+ return node.badgeVariant || 'default'
149
+ }
150
+
151
+ function hasChildren(node: TreeNode): boolean {
152
+ return !!node.children && node.children.length > 0
153
+ }
154
+
155
+ function canShowChildren(node: TreeNode, depth: number): boolean {
156
+ if (!hasChildren(node)) return false
157
+ if (props.maxDepth !== undefined && depth >= props.maxDepth) return false
158
+ return isExpanded(node.id)
159
+ }
160
+
161
+ // Render tree node recursively
162
+ function renderNode(node: TreeNode, depth: number): VNode {
163
+ const expanded = isExpanded(node.id)
164
+ const canExpand = hasChildren(node)
165
+ const showChildNodes = canShowChildren(node, depth)
166
+ const badge = getBadgeContent(node)
167
+ const badgeVar = getBadgeVariant(node)
168
+ const iconElements = getIconElements(node)
169
+
170
+ const header = h(
171
+ 'div',
172
+ {
173
+ class: 'mld-sample-tree__node-header',
174
+ onClick: () => handleNodeClick(node),
175
+ },
176
+ [
177
+ canExpand
178
+ ? h(
179
+ 'button',
180
+ {
181
+ type: 'button',
182
+ class: 'mld-sample-tree__toggle',
183
+ 'aria-label': expanded ? 'Collapse' : 'Expand',
184
+ onClick: (e: Event) => {
185
+ e.stopPropagation()
186
+ toggleExpand(node)
187
+ },
188
+ },
189
+ [
190
+ h('svg', { fill: 'none', stroke: 'currentColor', viewBox: '0 0 24 24', 'stroke-width': '2', 'stroke-linecap': 'round', 'stroke-linejoin': 'round' }, [
191
+ h('path', { d: 'm9 18 6-6-6-6' }),
192
+ ]),
193
+ ]
194
+ )
195
+ : h('span', { class: 'mld-sample-tree__toggle-placeholder' }),
196
+ props.showIcons
197
+ ? h('span', { class: ['mld-sample-tree__icon', `mld-sample-tree__icon--${node.type || 'custom'}`] }, [
198
+ h('svg', { fill: 'none', stroke: 'currentColor', viewBox: '0 0 24 24', 'stroke-width': '2', 'stroke-linecap': 'round', 'stroke-linejoin': 'round' },
199
+ iconElements.map(el => h(el.tag, el.attrs))
200
+ ),
201
+ ])
202
+ : null,
203
+ h('span', { class: 'mld-sample-tree__label' }, node.label),
204
+ badge !== undefined
205
+ ? h('span', { class: ['mld-sample-tree__badge', `mld-sample-tree__badge--${badgeVar}`] }, String(badge))
206
+ : null,
207
+ ]
208
+ )
209
+
210
+ const childNodes =
211
+ showChildNodes && node.children
212
+ ? h(
213
+ Transition,
214
+ { enterActiveClass: 'mld-sample-tree__children--entering', leaveActiveClass: 'mld-sample-tree__children--leaving' },
215
+ () => h('div', { class: 'mld-sample-tree__children' }, node.children!.map((child) => renderNode(child, depth + 1)))
216
+ )
217
+ : null
218
+
219
+ return h(
220
+ 'div',
221
+ {
222
+ key: node.id,
223
+ class: ['mld-sample-tree__node', expanded ? 'mld-sample-tree__node--expanded' : '', !canExpand ? 'mld-sample-tree__node--leaf' : ''],
224
+ role: 'treeitem',
225
+ 'aria-expanded': canExpand ? expanded : undefined,
226
+ },
227
+ [header, childNodes]
228
+ )
229
+ }
230
+
231
+ // Render the entire tree
232
+ function renderTree(): VNode[] {
233
+ return props.nodes.map((node) => renderNode(node, 0))
234
+ }
235
+ </script>
236
+
237
+ <template>
238
+ <div :class="['mld-sample-tree', `mld-sample-tree--${size}`]" role="tree">
239
+ <!-- Empty state -->
240
+ <div v-if="nodes.length === 0" class="mld-sample-tree__empty">
241
+ <svg class="mld-sample-tree__empty-icon" fill="none" stroke="currentColor" viewBox="0 0 24 24" stroke-width="2" stroke-linecap="round" stroke-linejoin="round">
242
+ <path d="M20 20a2 2 0 0 0 2-2V8a2 2 0 0 0-2-2h-7.9a2 2 0 0 1-1.69-.9L9.6 3.9A2 2 0 0 0 7.93 3H4a2 2 0 0 0-2 2v13a2 2 0 0 0 2 2Z" />
243
+ </svg>
244
+ <p class="mld-sample-tree__empty-text">No items</p>
245
+ </div>
246
+
247
+ <!-- Tree nodes rendered via render function -->
248
+ <template v-else>
249
+ <component :is="() => renderTree()" />
250
+ </template>
251
+ </div>
252
+ </template>
253
+
254
+ <style>
255
+ @import '../styles/components/sample-hierarchy-tree.css';
256
+ </style>
@@ -0,0 +1,91 @@
1
+ <script setup lang="ts">
2
+ import SampleLegend from './SampleLegend.vue'
3
+ import type { SampleType } from '../types'
4
+
5
+ const mockSamples: SampleType[] = [
6
+ { id: 's1', name: 'HeLa Cells', color: '#3B82F6', count: 24 },
7
+ { id: 's2', name: 'MCF-7 Cells', color: '#10B981', count: 12 },
8
+ { id: 's3', name: 'Vehicle Control', color: '#F59E0B', count: 8 },
9
+ { id: 's4', name: 'Positive Control', color: '#EF4444', count: 4 },
10
+ { id: 's5', name: 'QC Standard', color: '#8B5CF6', count: 6 },
11
+ ]
12
+
13
+ function initState() {
14
+ return {
15
+ modelValue: undefined as string | undefined,
16
+ samples: mockSamples,
17
+ showCounts: true,
18
+ editable: false,
19
+ size: 'md' as const,
20
+ orientation: 'vertical' as const,
21
+ }
22
+ }
23
+ </script>
24
+
25
+ <template>
26
+ <Story title="Lab/SampleLegend">
27
+ <Variant title="Playground" :init-state="initState">
28
+ <template #default="{ state }">
29
+ <div style="padding: 2rem; max-width: 300px;">
30
+ <SampleLegend
31
+ v-model="state.modelValue"
32
+ :samples="state.samples"
33
+ :show-counts="state.showCounts"
34
+ :editable="state.editable"
35
+ :size="state.size"
36
+ :orientation="state.orientation"
37
+ />
38
+ </div>
39
+ </template>
40
+ <template #controls="{ state }">
41
+ <HstCheckbox v-model="state.showCounts" title="Show Counts" />
42
+ <HstCheckbox v-model="state.editable" title="Editable" />
43
+ <HstSelect
44
+ v-model="state.size"
45
+ title="Size"
46
+ :options="[
47
+ { value: 'sm', label: 'Small' },
48
+ { value: 'md', label: 'Medium' },
49
+ { value: 'lg', label: 'Large' },
50
+ ]"
51
+ />
52
+ <HstSelect
53
+ v-model="state.orientation"
54
+ title="Orientation"
55
+ :options="[
56
+ { value: 'vertical', label: 'Vertical' },
57
+ { value: 'horizontal', label: 'Horizontal' },
58
+ ]"
59
+ />
60
+ </template>
61
+ </Variant>
62
+
63
+ <Variant title="Horizontal">
64
+ <div style="padding: 2rem;">
65
+ <SampleLegend
66
+ :samples="mockSamples"
67
+ orientation="horizontal"
68
+ />
69
+ </div>
70
+ </Variant>
71
+
72
+ <Variant title="Editable">
73
+ <div style="padding: 2rem; max-width: 300px;">
74
+ <SampleLegend
75
+ :samples="mockSamples"
76
+ editable
77
+ />
78
+ </div>
79
+ </Variant>
80
+
81
+ <Variant title="Small No Counts">
82
+ <div style="padding: 2rem; max-width: 250px;">
83
+ <SampleLegend
84
+ :samples="mockSamples"
85
+ size="sm"
86
+ :show-counts="false"
87
+ />
88
+ </div>
89
+ </Variant>
90
+ </Story>
91
+ </template>