@monoes/monomindcli 2.9.2 → 2.9.3

package/dist/src/memory/bm25-index.d.ts

@@ -2,6 +2,23 @@
  * In-process Okapi BM25 over live document chunks — the lexical arm of the
  * hybrid retrieval stack (Second Brain plan item 1).
  *
+ * WIRING STATUS (#126)
+ * ---------------------
+ * As of this change, `memory-bridge.ts`'s `bridgeSearchEntries()` calls this
+ * as its JS-fallback keyword scorer (replacing a naive token-overlap-fraction
+ * scan) WHEN the FTS5 fast path is unavailable/empty AND the queried entry
+ * set is small enough to build cheaply (currently capped at 1,500 entries —
+ * see BM25_ENTRY_CAP in memory-bridge.ts; this module's own measured cost of
+ * ~1.7s/12.5k chunks is why a cap exists at all). Above the cap, or with
+ * `MONOMIND_BM25=0`, the old token-overlap scan still runs. The 0.697
+ * Recall@5 cited below was measured by the EVAL HARNESS's separate scorer
+ * (`knowledge/eval/retrievers.ts`) against the full corpus with no size cap
+ * and no FTS5-availability branching — it does NOT automatically transfer to
+ * this capped, conditional production wiring. Treat it as the number that
+ * justified building this module, not as a live guarantee; re-measure via
+ * `monomind doc eval` after this change to get the real number for the
+ * actual wired path.
+ *
  * WHY THIS IS NOT FTS5
  * --------------------
  * The plan specified "add FTS5 over `memory_entries.content`". It was changed

package/dist/src/memory/bm25-index.d.ts.map

@@ -1 +1 @@
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package/dist/src/memory/bm25-index.js

@@ -2,6 +2,23 @@
  * In-process Okapi BM25 over live document chunks — the lexical arm of the
  * hybrid retrieval stack (Second Brain plan item 1).
  *
+ * WIRING STATUS (#126)
+ * ---------------------
+ * As of this change, `memory-bridge.ts`'s `bridgeSearchEntries()` calls this
+ * as its JS-fallback keyword scorer (replacing a naive token-overlap-fraction
+ * scan) WHEN the FTS5 fast path is unavailable/empty AND the queried entry
+ * set is small enough to build cheaply (currently capped at 1,500 entries —
+ * see BM25_ENTRY_CAP in memory-bridge.ts; this module's own measured cost of
+ * ~1.7s/12.5k chunks is why a cap exists at all). Above the cap, or with
+ * `MONOMIND_BM25=0`, the old token-overlap scan still runs. The 0.697
+ * Recall@5 cited below was measured by the EVAL HARNESS's separate scorer
+ * (`knowledge/eval/retrievers.ts`) against the full corpus with no size cap
+ * and no FTS5-availability branching — it does NOT automatically transfer to
+ * this capped, conditional production wiring. Treat it as the number that
+ * justified building this module, not as a live guarantee; re-measure via
+ * `monomind doc eval` after this change to get the real number for the
+ * actual wired path.
+ *
  * WHY THIS IS NOT FTS5
  * --------------------
  * The plan specified "add FTS5 over `memory_entries.content`". It was changed

package/dist/src/memory/bm25-index.js.map

@@ -1 +1 @@
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package/dist/src/memory/memory-bridge.d.ts

@@ -83,6 +83,10 @@ export declare function bridgeSearchEntries(options: {
     dbPath?: string;
     /** Skip cross-encoder reranking even if the model is loaded. */
     skipRerank?: boolean;
+    /** When true, superseded knowledge chunks are kept in the results
+     *  (flagged by the caller). Default false — removed documents are
+     *  filtered out for security. */
+    includeSuperseded?: boolean;
 }): Promise<{
     success: boolean;
     results: {

package/dist/src/memory/memory-bridge.d.ts.map

@@ -1 +1 @@
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package/dist/src/memory/memory-bridge.js

@@ -587,10 +587,36 @@ export async function bridgeSearchEntries(options) {
         // CLI callers pass 'all' as a no-filter sentinel — never treat it as a literal namespace
         const namespace = options.namespace && options.namespace !== 'all' ? options.namespace : undefined;
         const startTime = Date.now();
+        // ── Knowledge removal support (issue #106) ──────────────────────
+        // Pre-compute live document hashes for knowledge namespaces so we can
+        // (a) over-fetch to compensate for superseded entries being filtered,
+        // (b) filter them out after retrieval — ensuring removed documents
+        //     are invisible to EVERY caller, not just searchKnowledge.
+        // Dynamic import breaks the circular dependency: document-pipeline
+        // imports getProjectRoot from this module.
+        let _knowledgeLive = null;
+        let _knowledgeHasMeta = false;
+        let _isSupersededKey = null;
+        const knowledgeFilterActive = namespace?.startsWith('knowledge:') && !options.includeSuperseded;
+        if (knowledgeFilterActive) {
+            try {
+                const dp = await import('../knowledge/document-pipeline.js');
+                const rootDir = options.dbPath === GLOBAL_BRAIN
+                    ? getGlobalBrainDir() : getProjectRoot();
+                _knowledgeLive = dp.liveContentHashes(rootDir);
+                _knowledgeHasMeta = dp.hasKnowledgeMetadata(rootDir);
+                _isSupersededKey = dp.isSupersededKey;
+            }
+            catch { /* non-fatal: skip filtering when pipeline is unavailable */ }
+        }
         // Over-retrieve when the reranker is available: fetch more candidates so the
         // cross-encoder can reshuffle them. The reranker trims back to `limit`.
+        // For knowledge namespaces, also over-fetch to compensate for superseded
+        // document versions that will be filtered out below.
         const rerankerActive = !options.skipRerank && _reranker !== null && process.env.MONOMIND_RERANKER !== '0';
-        const retrieveK = rerankerActive ? Math.min(limit * 3, 20) : limit;
+        const knowledgeLimit = (_knowledgeLive && _knowledgeLive.size > 0)
+            ? Math.min(Math.max(limit * 20, limit), 300) : limit;
+        const retrieveK = rerankerActive ? Math.min(knowledgeLimit * 3, Math.max(20, knowledgeLimit)) : knowledgeLimit;
         let results = [];
         let searchMethod = 'keyword';
         // Reported to callers so "(semantic)" can never be printed over keyword hits.
@@ -674,26 +700,89 @@ export async function bridgeSearchEntries(options) {
                         ...(namespace ? { namespace } : {}),
                         limit: 50000,
                     });
-                    keywordHits = entries
-                        .map((e) => {
-                        const haystack = `${e.key || ''} ${e.content || ''}`.toLowerCase();
-                        const hits = tokens.filter(t => haystack.includes(t)).length;
-                        return { e, score: hits / tokens.length };
-                    })
-                        .filter((x) => x.score > 0)
-                        .sort((a, b) => b.score - a.score)
-                        .slice(0, limit)
-                        .map(({ e, score }) => ({
-                        id: e.id,
-                        key: e.key,
-                        content: capResultContent(e.content || ''),
-                        // Raw token-overlap fraction, NOT rescaled to look like a cosine.
-                        score,
-                        namespace: e.namespace,
-                        provenance: `keyword:${score.toFixed(2)}`,
-                        tags: e.tags ?? [],
-                        _createdAt: e.createdAt || 0,
-                    }));
+                    // #126: Bm25Index.build() costs real time at scale (measured in
+                    // bm25-index.ts's own header: ~113ms/673 chunks, ~1.7s/12.5k
+                    // chunks) — this fallback can be handed up to 50,000 entries, so
+                    // building a fresh index on every call without a cap would make
+                    // large stores' searches slower, not better. Below the cap, BM25
+                    // (proper IDF weighting) replaces the naive token-overlap-fraction
+                    // scan; above it, the fast scan keeps running so latency never
+                    // regresses. MONOMIND_BM25=0 disables this arm entirely (mirrors
+                    // the MONOMIND_RERANKER kill-switch).
+                    const BM25_ENTRY_CAP = 1500;
+                    const bm25Enabled = (process.env.MONOMIND_BM25 ?? '1') !== '0';
+                    let bm25Ok = false;
+                    if (bm25Enabled && entries.length > 0 && entries.length <= BM25_ENTRY_CAP) {
+                        try {
+                            const { Bm25Index } = await import('./bm25-index.js');
+                            // #126-review: index by the entry's ARRAY POSITION, not e.key —
+                            // memory_entries only enforces UNIQUE(namespace, key), so a bare
+                            // key string can legitimately repeat across namespaces (e.g. two
+                            // agents each storing a 'summary' key in their own namespace).
+                            // Keying by e.key alone collided in that case: every BM25 hit
+                            // sharing that key string resolved to whichever entry happened
+                            // to be inserted last into the lookup map, silently returning
+                            // the wrong entry's id/content/namespace.
+                            const chunks = entries.map((e, i) => ({ key: String(i), text: `${e.key || ''} ${e.content || ''}` }));
+                            const idx = Bm25Index.build(chunks, () => false); // no superseded concept at this generic KV level — filtered later by callers that care
+                            const hits = idx.search(queryStr, limit);
+                            // #126-review: Math.max(..., 1) as a divide-by-zero guard also
+                            // silently floors the normalization divisor whenever every real
+                            // score is < 1 (common for small/sparse corpora — exactly the
+                            // regime this capped fallback runs in), so the top hit stopped
+                            // normalizing to 1.0 as the comment below claims. Only fall
+                            // back to 1 when there is no positive score to divide by.
+                            const rawMax = hits.length ? Math.max(...hits.map(h => h.score)) : 0;
+                            const maxScore = rawMax > 0 ? rawMax : 1;
+                            keywordHits = hits.map((h) => {
+                                const e = entries[Number(h.key)];
+                                const normalized = h.score / maxScore; // BM25 scores aren't comparable across queries/corpora — normalise 0-1 like the FTS5 path does
+                                return {
+                                    id: e.id,
+                                    key: e.key,
+                                    content: capResultContent(e.content || ''),
+                                    score: normalized,
+                                    namespace: e.namespace,
+                                    provenance: `keyword-bm25:${normalized.toFixed(2)}`,
+                                    tags: e.tags ?? [],
+                                    _createdAt: e.createdAt || 0,
+                                };
+                            });
+                            bm25Ok = true;
+                        }
+                        catch (e) {
+                            // #126-review: BM25 build/search had no local try/catch, unlike
+                            // every other sub-path in this function — an exception here
+                            // used to propagate to the function's single outer catch,
+                            // discarding the whole call (including already-computed
+                            // semantic results) instead of degrading to the naive scan
+                            // below, which is what every other keyword-path failure does.
+                            if (process.env.DEBUG || process.env.MONOMIND_DEBUG)
+                                console.error('[memory-bridge] BM25 keyword search failed — falling back to token-overlap scan:', e);
+                        }
+                    }
+                    if (!bm25Ok) {
+                        keywordHits = entries
+                            .map((e) => {
+                            const haystack = `${e.key || ''} ${e.content || ''}`.toLowerCase();
+                            const hits = tokens.filter(t => haystack.includes(t)).length;
+                            return { e, score: hits / tokens.length };
+                        })
+                            .filter((x) => x.score > 0)
+                            .sort((a, b) => b.score - a.score)
+                            .slice(0, limit)
+                            .map(({ e, score }) => ({
+                            id: e.id,
+                            key: e.key,
+                            content: capResultContent(e.content || ''),
+                            // Raw token-overlap fraction, NOT rescaled to look like a cosine.
+                            score,
+                            namespace: e.namespace,
+                            provenance: `keyword:${score.toFixed(2)}`,
+                            tags: e.tags ?? [],
+                            _createdAt: e.createdAt || 0,
+                        }));
+                    }
                 }
                 if (results.length === 0) {
                     // No semantic results — keyword is all we have.
@@ -737,6 +826,18 @@ export async function bridgeSearchEntries(options) {
                 || !r._createdAt || r._createdAt > staleCutoff);
         }
         results.forEach((r) => delete r._createdAt);
+        // ── Knowledge superseded filtering (issue #106) ─────────────────
+        // Remove document chunks whose content hash is no longer current
+        // (i.e. the document was removed via `knowledge_remove` or replaced
+        // by a newer ingest). This runs inside the bridge so every caller —
+        // embeddings_search, CLI `memory search`, and searchKnowledge — gets
+        // the same removal guarantee.
+        if (_knowledgeLive && _isSupersededKey && results.length > 0) {
+            results = results.filter((r) => !_isSupersededKey(String(r.key ?? ''), _knowledgeLive, _knowledgeHasMeta));
+            // Trim back to the originally requested limit after overfetch.
+            if (results.length > limit)
+                results = results.slice(0, limit);
+        }
         // ── Cross-encoder reranking ──────────────────────────────────────
         // Fires only when: reranker loaded, >1 result, not explicitly skipped.
         // Lazy-load on first qualifying search so startup stays fast.
@@ -774,7 +875,12 @@ export async function bridgeListEntries(options) {
     try {
         const entries = await backend.query({
             type: 'exact',
-            namespace: options.namespace ?? 'default',
+            // No namespace means "all namespaces" — the query builder (sql-backend.ts)
+            // already skips its filter clause on a falsy namespace. Defaulting to the
+            // literal string 'default' here (as this used to) overrode that legitimate
+            // "no filter" signal and silently scoped every unfiltered list/search to a
+            // namespace that's usually near-empty in practice.
+            namespace: options.namespace,
             limit: options.limit ?? 100,
             offset: options.offset,
         });