@monoes/monomindcli 2.8.4 → 2.9.2

package/dist/src/ui/server.mjs

@@ -816,10 +816,21 @@ export async function startServer({ port = 4242, projectDir, openBrowser = true,
         const ctl = JSON.parse(fs.readFileSync(path.join(authFileDir, 'control.json'), 'utf8'));
         const ctlPort = Number(ctl.port || (String(ctl.url || '').match(/:(\d+)/) || [])[1]);
         if (ctlPort && ctlPort !== actualPort && !(Number.isInteger(ctl.pid) && ctl.pid === process.pid)) {
-          try {
-            await fetch(`http://127.0.0.1:${ctlPort}/api/status`, { signal: AbortSignal.timeout(800) });
-            primary = false; // something answered — a live server owns the primary token
-          } catch (_) { primary = true; } // nothing answering — stale record
+          // A single 800ms probe is not enough evidence to declare the record
+          // stale: on a loaded host the primary's event loop can be blocked for
+          // seconds (heavy search/KG work, parallel test suites), the probe
+          // times out, and a secondary would wrongly claim primary and CLOBBER
+          // the live server's token — the exact failure this gate exists to
+          // prevent. Retry before concluding "nothing answering" so the gate
+          // stays conservative on ambiguity.
+          for (let attempt = 0; attempt < 3 && primary; attempt++) {
+            try {
+              await fetch(`http://127.0.0.1:${ctlPort}/api/status`, { signal: AbortSignal.timeout(1500) });
+              primary = false; // something answered — a live server owns the primary token
+            } catch (_) {
+              if (attempt < 2) await new Promise(r => setTimeout(r, 250));
+            }
+          }
         }
       } catch (_) { /* no readable control.json — treat as primary */ }
       fs.writeFileSync(
@@ -1913,6 +1924,168 @@ export async function startServer({ port = 4242, projectDir, openBrowser = true,
       return;
     }
 
+    // ------------------------------------------------------- GET /api/global-docs
+    // Lists mastermind-generated markdown documents across ALL known projects,
+    // plus the global brain. Returns metadata only — content is fetched
+    // on demand via /api/global-doc/read. Ordered by mtime (newest first)
+    // by the caller; the server returns enough fields for the client to sort
+    // and group either way.
+    if (req.method === 'GET' && url.startsWith('/api/global-docs')) {
+      try {
+        // 1. Gather candidate project roots: every project the dashboard
+        //    knows about (from ~/.claude/projects) + the global brain dir.
+        const projectsBase = path.join(os.homedir(), '.claude', 'projects');
+        const roots = [];
+        try {
+          for (const slug of fs.readdirSync(projectsBase)) {
+            const projDir = path.join(projectsBase, slug);
+            if (!fs.statSync(projDir).isDirectory()) continue;
+            const resolved = resolveSlugToPath(slug, projDir);
+            if (resolved && fs.existsSync(resolved)) roots.push(resolved);
+          }
+        } catch { /* projects tree absent — fine */ }
+        const globalBrain = process.env.MONOMIND_GLOBAL_BRAIN_DIR
+          || path.join(os.homedir(), '.monomind', 'global-brain');
+        if (fs.existsSync(globalBrain)) roots.push(globalBrain);
+
+        // 2. Per-root, scan the known mastermind output directories.
+        //    Order in this array is the category-priority order used when
+        //    no doc-specific category is inferable from the filename.
+        const DOC_DIRS = [
+          { sub: ['docs', 'mastermind', 'plans'],       category: 'plan' },
+          { sub: ['docs', 'mastermind', 'specs'],       category: 'spec' },
+          { sub: ['docs', 'mastermind', 'reviews'],     category: 'review' },
+          { sub: ['docs', 'mastermind', 'reports'],     category: 'report' },
+          { sub: ['docs', 'mastermind', 'wiki'],        category: 'wiki' },
+          { sub: ['docs', 'mastermind', 'decisions'],   category: 'decision' },
+          { sub: ['docs', 'mastermind', 'ideas'],       category: 'idea' },
+          { sub: ['docs', 'mastermind', 'improvements'],category: 'improvement' },
+          { sub: ['docs', 'mastermind', 'tasks'],       category: 'task' },
+          { sub: ['docs', 'mastermind'],                category: 'mastermind' },
+          { sub: ['docs', 'improvements'],              category: 'improvement' },
+          { sub: ['docs', 'ideas'],                     category: 'idea' },
+          { sub: ['docs', 'tasks'],                     category: 'task' },
+          { sub: ['docs', 'adrs'],                      category: 'decision' },
+          { sub: ['docs', 'specs'],                     category: 'spec' },
+          { sub: ['docs', 'reviews'],                   category: 'review' },
+          { sub: ['docs', 'plans'],                     category: 'plan' },
+          { sub: ['docs', 'reports'],                   category: 'report' },
+          { sub: ['docs', 'decisions'],                 category: 'decision' },
+          { sub: ['docs', 'wiki'],                      category: 'wiki' },
+        ];
+
+        const seen = new Set(); // dedupe by absolute path
+        const docs = [];
+        for (const root of roots) {
+          for (const { sub, category } of DOC_DIRS) {
+            const dir = path.join(root, ...sub);
+            if (!fs.existsSync(dir)) continue;
+            let files = [];
+            try { files = fs.readdirSync(dir); } catch { continue; }
+            for (const fname of files) {
+              if (!fname.endsWith('.md') || fname.startsWith('._')) continue;
+              const fullPath = path.join(dir, fname);
+              let st;
+              try { st = fs.statSync(fullPath); } catch { continue; }
+              if (!st.isFile()) continue;
+              if (seen.has(fullPath)) continue;
+              seen.add(fullPath);
+              // Pull the first H1 (or first non-empty line) as the title.
+              let title = fname.replace(/\.md$/i, '');
+              let preview = '';
+              try {
+                const raw = fs.readFileSync(fullPath, 'utf8').slice(0, 4000);
+                const h1 = raw.match(/^#\s+(.+)$/m);
+                if (h1) title = h1[1].trim();
+                // First non-heading, non-frontmatter paragraph as a preview.
+                preview = raw
+                  .replace(/^---[\s\S]*?---/, '')
+                  .split('\n')
+                  .map(l => l.trim())
+                  .filter(l => l && !/^#{1,6}\s/.test(l) && !/^[<|!]/.test(l))
+                  .slice(0, 1)
+                  .join(' ')
+                  .slice(0, 180);
+              } catch { /* unreadable — keep defaults */ }
+              docs.push({
+                path: fullPath,
+                project: root === globalBrain ? 'Global Brain' : (root.split('/').filter(Boolean).pop() || root),
+                projectPath: root,
+                category,
+                filename: fname,
+                title,
+                preview,
+                sizeBytes: st.size,
+                mtime: st.mtimeMs,
+                date: new Date(st.mtimeMs).toISOString(),
+              });
+            }
+          }
+        }
+        res.writeHead(200, { 'Content-Type': 'application/json', ...(corsOrigin ? { 'Access-Control-Allow-Origin': corsOrigin } : {}), 'Cache-Control': 'no-cache' });
+        res.end(JSON.stringify({ docs }));
+      } catch (err) {
+        res.writeHead(500, { 'Content-Type': 'application/json' });
+        res.end(JSON.stringify({ error: err.message }));
+      }
+      return;
+    }
+
+    // ------------------------------------------------------- GET /api/global-doc/read
+    // Returns the raw markdown body of a single doc. The `path` query param
+    // must resolve to a file under one of the project roots or the global
+    // brain — anything else is rejected with 403 to avoid an arbitrary-file-read.
+    if (req.method === 'GET' && url.startsWith('/api/global-doc/read')) {
+      try {
+        const qs = new URL(req.url, 'http://localhost').searchParams;
+        const target = qs.get('path');
+        if (!target || typeof target !== 'string') {
+          res.writeHead(400, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'path query param required' }));
+          return;
+        }
+        let resolved = path.resolve(target);
+        // Resolve symlinks so the containment check can't be bypassed by a
+        // symlink that lexically sits inside an allowed root but physically
+        // points outside it. Fall back to the lexical path if the target
+        // doesn't exist yet — the existsSync check below will 403 it anyway.
+        try { resolved = fs.realpathSync(resolved); } catch {}
+        // Reconstruct the allowed roots set and verify containment.
+        const projectsBase = path.join(os.homedir(), '.claude', 'projects');
+        const allowedRoots = [];
+        try {
+          for (const slug of fs.readdirSync(projectsBase)) {
+            const resolvedProj = resolveSlugToPath(slug, path.join(projectsBase, slug));
+            if (resolvedProj) allowedRoots.push(resolvedProj);
+          }
+        } catch {}
+        const globalBrain = process.env.MONOMIND_GLOBAL_BRAIN_DIR
+          || path.join(os.homedir(), '.monomind', 'global-brain');
+        if (fs.existsSync(globalBrain)) allowedRoots.push(globalBrain);
+        const isAllowed = allowedRoots.some(root => {
+          const rel = path.relative(root, resolved);
+          return rel && !rel.startsWith('..') && !path.isAbsolute(rel);
+        });
+        if (!isAllowed || !fs.existsSync(resolved) || !fs.statSync(resolved).isFile()) {
+          res.writeHead(403, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'path is outside the allowed project roots' }));
+          return;
+        }
+        if (!resolved.toLowerCase().endsWith('.md')) {
+          res.writeHead(400, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'only markdown (.md) files are readable' }));
+          return;
+        }
+        const body = fs.readFileSync(resolved, 'utf8');
+        res.writeHead(200, { 'Content-Type': 'application/json', ...(corsOrigin ? { 'Access-Control-Allow-Origin': corsOrigin } : {}), 'Cache-Control': 'no-cache' });
+        res.end(JSON.stringify({ path: resolved, body }));
+      } catch (err) {
+        res.writeHead(500, { 'Content-Type': 'application/json' });
+        res.end(JSON.stringify({ error: err.message }));
+      }
+      return;
+    }
+
     // ------------------------------------------------------- GET /api/palace
     if (req.method === 'GET' && url === '/api/palace') {
       try {
@@ -2224,6 +2397,141 @@ export async function startServer({ port = 4242, projectDir, openBrowser = true,
       return;
     }
 
+    // ------------------------------------------ GET /api/memory/entries (SQLite)
+    if (req.method === 'GET' && url === '/api/memory/entries') {
+      try {
+        const qs = new URL(req.url, 'http://localhost').searchParams;
+        const ns = qs.get('namespace') || undefined;
+        const limit = Math.min(parseInt(qs.get('limit') || '50', 10) || 50, 200);
+        const offset = parseInt(qs.get('offset') || '0', 10) || 0;
+        const bridge = await _getKnowledgeBridge();
+        if (!bridge) {
+          res.writeHead(503, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'Memory bridge unavailable' }));
+          return;
+        }
+        const result = await bridge.bridgeListEntries({ namespace: ns, limit, offset });
+        if (!result || !result.success) {
+          res.writeHead(500, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: result?.error || 'Failed to list entries' }));
+          return;
+        }
+        res.writeHead(200, { 'Content-Type': 'application/json', ...(corsOrigin ? { 'Access-Control-Allow-Origin': corsOrigin } : {}), 'Cache-Control': 'no-cache' });
+        res.end(JSON.stringify({ entries: result.entries, total: result.total }));
+      } catch (err) {
+        res.writeHead(500, { 'Content-Type': 'application/json' });
+        res.end(JSON.stringify({ error: err.message }));
+      }
+      return;
+    }
+
+    // --------------------------------------- GET /api/memory/search (SQLite)
+    if (req.method === 'GET' && url === '/api/memory/search') {
+      try {
+        const qs = new URL(req.url, 'http://localhost').searchParams;
+        const query = qs.get('q') || '';
+        const ns = qs.get('namespace') || undefined;
+        const limit = Math.min(parseInt(qs.get('limit') || '20', 10) || 20, 100);
+        if (!query) {
+          res.writeHead(400, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'Missing query parameter q' }));
+          return;
+        }
+        const bridge = await _getKnowledgeBridge();
+        if (!bridge) {
+          res.writeHead(503, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'Memory bridge unavailable' }));
+          return;
+        }
+        const result = await bridge.bridgeSearchEntries({ query, namespace: ns, limit });
+        if (!result || !result.success) {
+          res.writeHead(500, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: result?.error || 'Search failed' }));
+          return;
+        }
+        res.writeHead(200, { 'Content-Type': 'application/json', ...(corsOrigin ? { 'Access-Control-Allow-Origin': corsOrigin } : {}), 'Cache-Control': 'no-cache' });
+        res.end(JSON.stringify({ results: result.results, searchTime: result.searchTime, searchMethod: result.searchMethod }));
+      } catch (err) {
+        res.writeHead(500, { 'Content-Type': 'application/json' });
+        res.end(JSON.stringify({ error: err.message }));
+      }
+      return;
+    }
+
+    // -------------------------------------- POST /api/memory/entry (SQLite)
+    if (req.method === 'POST' && url === '/api/memory/entry') {
+      let body = '';
+      req.on('data', chunk => { body += chunk; if (body.length > 2097152) { req.destroy(); return; } });
+      req.on('end', async () => {
+        try {
+          const { key, value, namespace, tags } = JSON.parse(body);
+          if (!key || !value) {
+            res.writeHead(400, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: 'Missing key or value' }));
+            return;
+          }
+          const bridge = await _getKnowledgeBridge();
+          if (!bridge) {
+            res.writeHead(503, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: 'Memory bridge unavailable' }));
+            return;
+          }
+          const result = await bridge.bridgeStoreEntry({
+            key: String(key),
+            value: String(value),
+            namespace: namespace || 'default',
+            tags: Array.isArray(tags) ? tags : [],
+            upsert: true,
+          });
+          if (!result || !result.success) {
+            res.writeHead(500, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: result?.error || 'Store failed' }));
+            return;
+          }
+          res.writeHead(200, { 'Content-Type': 'application/json', ...(corsOrigin ? { 'Access-Control-Allow-Origin': corsOrigin } : {}) });
+          res.end(JSON.stringify({ ok: true, id: result.id, duplicate: result.duplicate }));
+        } catch (err) {
+          res.writeHead(500, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: err.message }));
+        }
+      });
+      return;
+    }
+
+    // ------------------------------------ DELETE /api/memory/entry (SQLite)
+    if (req.method === 'DELETE' && url === '/api/memory/entry') {
+      let body = '';
+      req.on('data', chunk => { body += chunk; if (body.length > 2097152) { req.destroy(); return; } });
+      req.on('end', async () => {
+        try {
+          const { key, id, namespace } = JSON.parse(body);
+          if (!key && !id) {
+            res.writeHead(400, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: 'Missing key or id' }));
+            return;
+          }
+          const bridge = await _getKnowledgeBridge();
+          if (!bridge) {
+            res.writeHead(503, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: 'Memory bridge unavailable' }));
+            return;
+          }
+          const result = await bridge.bridgeDeleteEntry({ key, id, namespace: namespace || 'default' });
+          if (!result || !result.success) {
+            res.writeHead(500, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: result?.error || 'Delete failed' }));
+            return;
+          }
+          res.writeHead(200, { 'Content-Type': 'application/json', ...(corsOrigin ? { 'Access-Control-Allow-Origin': corsOrigin } : {}) });
+          res.end(JSON.stringify({ ok: true, deleted: result.deleted }));
+        } catch (err) {
+          res.writeHead(500, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: err.message }));
+        }
+      });
+      return;
+    }
+
     // ---------------------------------------------------------- GET /api/loops
     if (req.method === 'GET' && url === '/api/loops') {
       try {
@@ -2869,7 +3177,8 @@ export async function startServer({ port = 4242, projectDir, openBrowser = true,
               ok(`Risk Profile — ${new Date().toISOString().split('T')[0]}\n${'─'.repeat(50)}\n${risks.length ? risks.join('\n') : '  No significant risks detected.'}\n\nSummary: ${n} nodes · ${e} edges · ${files} files`);
 
             } else if (tool === 'monograph_author_analytics') {
-              const limit = input.limit || 20;
+              // Clamp to a safe integer — this value is interpolated into a shell command below.
+              const limit = Math.min(Math.max(parseInt(input.limit, 10) || 20, 1), 100);
               const { execSync: execS } = await import('child_process');
               try {
                 const log = execS(`git log --format="%ae" --no-merges -- . 2>/dev/null | sort | uniq -c | sort -rn | head -${limit}`, { cwd: d2, encoding: 'utf-8', timeout: 5000 });
@@ -2990,7 +3299,9 @@ export async function startServer({ port = 4242, projectDir, openBrowser = true,
               const { execSync: execS2 } = await import('child_process');
               let churnMap = {};
               try {
-                const since = input.since || '6 months ago';
+                // Whitelist the --since value — it is interpolated into a shell command below.
+                const sinceRaw = String(input.since || '');
+                const since = /^\d+ (day|week|month|year)s? ago$/.test(sinceRaw) ? sinceRaw : '6 months ago';
                 const log2 = execS2(`git log --since="${since}" --name-only --format="" -- . 2>/dev/null | grep -v '^$' | sort | uniq -c | sort -rn | head -200`, { cwd: d2, encoding: 'utf-8', timeout: 8000 });
                 for (const line of log2.trim().split('\n')) {
                   const m = line.trim().match(/^(\d+)\s+(.+)$/);
@@ -3533,11 +3844,16 @@ export async function startServer({ port = 4242, projectDir, openBrowser = true,
   // Also forwards new bytes to per-org SSE clients (runStreamClients) so the chat tab
   // receives bash-written lifecycle events in real-time (Phase 3 gap-fill).
   const _orgsFileSizes = new Map(); // absPath → last known byte offset
+  const _MAX_ORGS_FILE_SIZES = 1000;
   function _readNewOrgLines(absPath, orgName, runId) {
     try {
       const stat = fs.statSync(absPath);
       const prevSize = _orgsFileSizes.get(absPath) || 0;
       if (stat.size <= prevSize) return; // nothing new
+      if (!_orgsFileSizes.has(absPath) && _orgsFileSizes.size >= _MAX_ORGS_FILE_SIZES) {
+        const oldest = _orgsFileSizes.keys().next().value;
+        _orgsFileSizes.delete(oldest);
+      }
       _orgsFileSizes.set(absPath, stat.size);
       // Read only the new bytes to avoid re-processing existing lines
       const fd = fs.openSync(absPath, 'r');
@@ -3593,7 +3909,11 @@ export async function startServer({ port = 4242, projectDir, openBrowser = true,
         const _runsDir = path.join(_orgsDir, _org, 'runs');
         if (!fs.existsSync(_runsDir)) continue;
         for (const _f of fs.readdirSync(_runsDir).filter(f => f.endsWith('.jsonl') && !f.startsWith('._') && !f.endsWith('.warm.jsonl') && !f.endsWith('.convs.jsonl'))) {
-          try { _orgsFileSizes.set(path.join(_runsDir, _f), fs.statSync(path.join(_runsDir, _f)).size); } catch (_) {}
+          try {
+            const _absF = path.join(_runsDir, _f);
+            if (_orgsFileSizes.size >= _MAX_ORGS_FILE_SIZES) { const _k = _orgsFileSizes.keys().next().value; _orgsFileSizes.delete(_k); }
+            _orgsFileSizes.set(_absF, fs.statSync(_absF).size);
+          } catch (_) {}
         }
       }
     } catch (_) {}

package/dist/src/update/checker.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"checker.d.ts","sourceRoot":"","sources":["../../../src/update/checker.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAsBH,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,MAAM,CAAC;IAChB,cAAc,EAAE,MAAM,CAAC;IACvB,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,OAAO,GAAG,OAAO,GAAG,OAAO,GAAG,MAAM,CAAC;IACjD,gBAAgB,EAAE,OAAO,CAAC;IAC1B,QAAQ,EAAE,UAAU,GAAG,MAAM,GAAG,QAAQ,GAAG,KAAK,CAAC;IACjD,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,YAAY;IAC3B,OAAO,EAAE,OAAO,CAAC;IACjB,kBAAkB,EAAE,MAAM,CAAC;IAC3B,UAAU,EAAE;QACV,KAAK,EAAE,OAAO,CAAC;QACf,KAAK,EAAE,OAAO,CAAC;QACf,KAAK,EAAE,OAAO,CAAC;KAChB,CAAC;IACF,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,UAAU,GAAG,MAAM,GAAG,QAAQ,GAAG,KAAK,CAAC,CAAC;IACjE,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB;AAED,QAAA,MAAM,cAAc,EAAE,YAiBrB,CAAC;AAqIF,wBAAgB,mBAAmB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAqCtE;AAED,wBAAsB,eAAe,CACnC,MAAM,GAAE,YAA6B,GACpC,OAAO,CAAC;IAAE,OAAO,EAAE,iBAAiB,EAAE,CAAC;IAAC,OAAO,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAyE9E;AAED,wBAAsB,kBAAkB,CACtC,WAAW,EAAE,MAAM,EACnB,MAAM,GAAE,YAA6B,GACpC,OAAO,CAAC,iBAAiB,GAAG,IAAI,CAAC,CA4BnC;AAED,OAAO,EAAE,cAAc,EAAE,CAAC"}

package/dist/src/update/checker.js

@@ -4,6 +4,7 @@
  */
 import { createRequire } from 'module';
 import { execFileSync } from 'child_process';
+import { npmCommand } from '../utils/npm-command.js';
 // Inline semver shim — avoids external dependency
 const semver = {
     valid: (v) => /^\d+\.\d+\.\d+/.test(v || '') ? v : null,
@@ -178,7 +179,7 @@ export function getInstalledVersion(packageName) {
         }
         // Attempt 3: npm global prefix (covers `npm i -g monomind`)
         try {
-            const prefix = execFileSync('npm', ['prefix', '-g'], { encoding: 'utf8', timeout: 3000 }).trim();
+            const prefix = execFileSync(npmCommand(), ['prefix', '-g'], { encoding: 'utf8', timeout: 3000 }).trim();
             const globalPkg = require(require.resolve(`${packageName}/package.json`, { paths: [`${prefix}/lib/node_modules`] }));
             if (globalPkg.version)
                 return globalPkg.version;

package/dist/src/update/checker.js.map

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package/dist/src/update/executor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"executor.d.ts","sourceRoot":"","sources":["../../../src/update/executor.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAMH,OAAO,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAC;AACjD,OAAO,EAAkB,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAiClE,MAAM,WAAW,kBAAkB;IACjC,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,OAAO,CAAC;IACjB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,iBAAiB,EAAE,OAAO,CAAC;CAC5B;AAED,MAAM,WAAW,qBAAqB;IACpC,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,gBAAgB,CAAC;CAC9B;AAYD,wBAAgB,WAAW,IAAI,kBAAkB,EAAE,CA2BlD;AAiBD,wBAAsB,aAAa,CACjC,MAAM,EAAE,iBAAiB,EACzB,iBAAiB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EACzC,MAAM,UAAQ,GACb,OAAO,CAAC,qBAAqB,CAAC,CAkFhC;AAED,wBAAsB,sBAAsB,CAC1C,OAAO,EAAE,iBAAiB,EAAE,EAC5B,iBAAiB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EACzC,MAAM,UAAQ,GACb,OAAO,CAAC,qBAAqB,EAAE,CAAC,CAoBlC;AAED,wBAAsB,cAAc,CAClC,WAAW,CAAC,EAAE,MAAM,GACnB,OAAO,CAAC;IAAE,OAAO,EAAE,OAAO,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CAqDhD;AAED,wBAAgB,gBAAgB,CAAC,KAAK,SAAK,GAAG,kBAAkB,EAAE,CAGjE;AAED,wBAAgB,YAAY,IAAI,IAAI,CAInC"}

package/dist/src/update/executor.js

@@ -7,6 +7,7 @@ import * as fs from 'fs';
 import * as path from 'path';
 import * as os from 'os';
 import { validateUpdate } from './validator.js';
+import { npmCommand } from '../utils/npm-command.js';
 // Inline semver shim — avoids external dependency (semver is not in package.json)
 const semver = {
     valid: (v) => /^\d+\.\d+\.\d+/.test(v || '') ? v : null,
@@ -30,7 +31,7 @@ function isValidPackageName(name) {
 /** Max bytes we will read from the on-disk update history file. */
 const MAX_HISTORY_FILE_BYTES = 1 * 1024 * 1024; // 1 MB
 function execFileAsync(cmd, args) {
-    return new Promise((resolve, reject) => execFile(cmd, args, (err) => (err ? reject(err) : resolve())));
+    return new Promise((resolve, reject) => execFile(cmd, args, { timeout: 120_000 }, (err) => (err ? reject(err) : resolve())));
 }
 const HISTORY_FILE = path.join(os.homedir(), '.monomind', 'update-history.json');
 const MAX_HISTORY_ENTRIES = 100;
@@ -120,7 +121,9 @@ export async function executeUpdate(update, installedPackages, dryRun = false) {
         if (!semver.valid(version)) {
             throw new Error(`Invalid version: ${version}`);
         }
-        await execFileAsync('npm', ['install', `${pkg}@${version}`, '--save-exact']);
+        // Install globally — -g is critical: without it npm installs into the
+        // user's cwd, silently modifying their project package.json (#83).
+        await execFileAsync(npmCommand(), ['install', '-g', `${pkg}@${version}`, '--save-exact', '--ignore-scripts']);
         // Record successful update
         recordUpdate({
             timestamp: new Date().toISOString(),
@@ -200,7 +203,8 @@ export async function rollbackUpdate(packageName) {
         if (!semver.valid(version)) {
             throw new Error(`Invalid version: ${version}`);
         }
-        await execFileAsync('npm', ['install', `${pkg}@${version}`, '--save-exact']);
+        // Install globally — prevents modifying the user's project (#83).
+        await execFileAsync(npmCommand(), ['install', '-g', `${pkg}@${version}`, '--save-exact', '--ignore-scripts']);
         // Record the rollback
         recordUpdate({
             timestamp: new Date().toISOString(),

package/dist/src/update/executor.js.map

@@ -1 +1 @@
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package/dist/src/update/index.d.ts

@@ -21,7 +21,6 @@ import type { UpdateCheckResult } from './checker.js';
  * Synchronous — reads cached state from last check.
  * Returns a short inline string for the CLI version tagline, e.g.
  *   "  ↑ v1.11.12 available"
- *   "  ↑ v1.11.12 installing..."
  *   "  ✓ up to date"
  *   ""  (no cache yet)
  */

package/dist/src/update/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/update/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EACL,eAAe,EACf,kBAAkB,EAClB,mBAAmB,EACnB,cAAc,GACf,MAAM,cAAc,CAAC;AAEtB,YAAY,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAEpE,OAAO,EACL,qBAAqB,EACrB,WAAW,EACX,iBAAiB,EACjB,UAAU,EACV,SAAS,GACV,MAAM,mBAAmB,CAAC;AAE3B,YAAY,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AAExD,OAAO,EAAE,cAAc,EAAE,kBAAkB,EAAE,MAAM,gBAAgB,CAAC;AAEpE,YAAY,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAEvD,OAAO,EACL,aAAa,EACb,sBAAsB,EACtB,cAAc,EACd,gBAAgB,EAChB,YAAY,EACZ,WAAW,GACZ,MAAM,eAAe,CAAC;AAEvB,YAAY,EAAE,kBAAkB,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAC;AAI/E,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAC;AAoBtD;;;;;;;GAOG;AACH,wBAAgB,gBAAgB,CAAC,cAAc,EAAE,MAAM,GAAG,MAAM,CAY/D;AAED;;;GAGG;AACH,wBAAsB,qBAAqB,CAAC,OAAO,EAAE;IACnD,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,YAAY,CAAC,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,IAAI,CAAC;CAC7C,GAAG,OAAO,CAAC;IACV,OAAO,EAAE,OAAO,CAAC;IACjB,gBAAgB,EAAE,iBAAiB,EAAE,CAAC;IACtC,cAAc,EAAE,MAAM,EAAE,CAAC;IACzB,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB,CAAC,CAqDD"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/update/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EACL,eAAe,EACf,kBAAkB,EAClB,mBAAmB,EACnB,cAAc,GACf,MAAM,cAAc,CAAC;AAEtB,YAAY,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAEpE,OAAO,EACL,qBAAqB,EACrB,WAAW,EACX,iBAAiB,EACjB,UAAU,EACV,SAAS,GACV,MAAM,mBAAmB,CAAC;AAE3B,YAAY,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AAExD,OAAO,EAAE,cAAc,EAAE,kBAAkB,EAAE,MAAM,gBAAgB,CAAC;AAEpE,YAAY,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAEvD,OAAO,EACL,aAAa,EACb,sBAAsB,EACtB,cAAc,EACd,gBAAgB,EAChB,YAAY,EACZ,WAAW,GACZ,MAAM,eAAe,CAAC;AAEvB,YAAY,EAAE,kBAAkB,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAC;AAI/E,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAC;AAmBtD;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,cAAc,EAAE,MAAM,GAAG,MAAM,CAY/D;AAED;;;GAGG;AACH,wBAAsB,qBAAqB,CAAC,OAAO,EAAE;IACnD,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,YAAY,CAAC,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,IAAI,CAAC;CAC7C,GAAG,OAAO,CAAC;IACV,OAAO,EAAE,OAAO,CAAC;IACjB,gBAAgB,EAAE,iBAAiB,EAAE,CAAC;IACtC,cAAc,EAAE,MAAM,EAAE,CAAC;IACzB,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB,CAAC,CA6BD"}

package/dist/src/update/index.js

@@ -13,8 +13,7 @@ export { shouldCheckForUpdates, recordCheck, getCachedVersions, clearCache, load
 export { validateUpdate, validateBulkUpdate } from './validator.js';
 export { executeUpdate, executeMultipleUpdates, rollbackUpdate, getUpdateHistory, clearHistory, loadHistory, } from './executor.js';
 // Re-export a convenience function for startup
-import { checkForUpdates, DEFAULT_CONFIG, getInstalledVersion } from './checker.js';
-import { executeMultipleUpdates } from './executor.js';
+import { checkForUpdates, DEFAULT_CONFIG } from './checker.js';
 import { getCachedVersions } from './rate-limiter.js';
 // Inline semver shim — avoids external dependency (semver is not listed in package.json)
 const semver = {
@@ -38,7 +37,6 @@ const semver = {
  * Synchronous — reads cached state from last check.
  * Returns a short inline string for the CLI version tagline, e.g.
  *   "  ↑ v1.11.12 available"
- *   "  ↑ v1.11.12 installing..."
  *   "  ✓ up to date"
  *   ""  (no cache yet)
  */
@@ -77,27 +75,10 @@ export async function runStartupUpdateCheck(options) {
         }
         result.checked = true;
         result.updatesAvailable = results;
-        // Auto-update if enabled
-        if (options.autoUpdate !== false) {
-            const autoUpdateable = results.filter((r) => r.shouldAutoUpdate);
-            if (autoUpdateable.length > 0) {
-                // Notify caller before installation begins
-                options.onInstalling?.(autoUpdateable.map(u => `${u.package}@${u.latestVersion}`));
-                // Get current installed packages
-                const installedPackages = {};
-                for (const update of autoUpdateable) {
-                    const version = getInstalledVersion(update.package);
-                    if (version) {
-                        installedPackages[update.package] = version;
-                    }
-                }
-                // Execute updates
-                const updateResults = await executeMultipleUpdates(autoUpdateable, installedPackages);
-                result.updatesApplied = updateResults
-                    .filter((r) => r.success)
-                    .map((r) => `${r.package}@${r.version}`);
-            }
-        }
+        // Notify-only: never auto-install on startup (GitHub issue #83).
+        // The old code ran `npm install` with inherited cwd, silently modifying
+        // the user's project package.json instead of updating the global CLI.
+        // We still populate updatesAvailable so callers can display a message.
         return result;
     }
     catch {