@monoes/monomindcli 2.7.13 → 2.7.15

package/dist/src/init/settings-generator.js

@@ -52,6 +52,15 @@ export function generateSettings(options) {
         // Monomind specific environment
         MONOMIND_V1_ENABLED: 'true',
         MONOMIND_HOOKS_ENABLED: 'true',
+        // Quiet by default: silence per-prompt advisory blocks ([AUDIT],
+        // [CODEBASE], [MONOGRAPH], [INTELLIGENCE], [COST], …). Side-effects
+        // (file writes, telemetry, route mutations) are unchanged. Opt out by
+        // removing this or setting MONOMIND_HOOK_VERBOSE=1.
+        MONOMIND_HOOK_QUIET: '1',
+        // Monograph stays fully usable; this only removes the bash/search
+        // toll-gate that forced a monograph call before every grep. Call
+        // monograph_query / monograph_suggest whenever you want.
+        MONOMIND_GRAPH_GATE: 'off',
     };
     // Detect platform for platform-aware configuration
     const platform = detectPlatform();
@@ -137,6 +146,13 @@ export function generateSettings(options) {
  * Detect if we're on Windows for platform-aware hook commands.
  */
 const IS_WINDOWS = process.platform === 'win32';
+/**
+ * Absolute path to the Node binary that ran `monomind init`.
+ * Baked into generated hook commands so they work even when node
+ * isn't on the bare PATH (e.g. nvm-managed installs where sh -c
+ * doesn't source ~/.bashrc).
+ */
+const NODE_BIN = process.execPath;
 /**
  * Build a hook command with reliable $CLAUDE_PROJECT_DIR expansion.
  * Wraps in `sh -c` to guarantee shell expansion on all platforms (macOS zsh,
@@ -146,13 +162,13 @@ const IS_WINDOWS = process.platform === 'win32';
  */
 function hookCmd(script, subcommand) {
     if (IS_WINDOWS) {
-        return `cmd /c node "%CLAUDE_PROJECT_DIR%/${script}" ${subcommand}`.trim();
+        return `cmd /c "${NODE_BIN}" "%CLAUDE_PROJECT_DIR%/${script}" ${subcommand}`.trim();
     }
     // Use sh -c to ensure $CLAUDE_PROJECT_DIR is expanded by a real shell,
     // even if Claude Code doesn't invoke hooks through a shell on macOS.
     // eslint-disable-next-line no-template-curly-in-string
     const dir = '${CLAUDE_PROJECT_DIR:-.}';
-    return `sh -c 'exec node "${dir}/${script}" ${subcommand}'`;
+    return `sh -c 'exec "${NODE_BIN}" "${dir}/${script}" ${subcommand}'`;
 }
 /** Shorthand for CJS hook-handler commands */
 function hookHandlerCmd(subcommand) {
@@ -166,18 +182,16 @@ function autoMemoryCmd(subcommand) {
 function captureHandlerCmd(subcommand) {
     // capture-handler does not use sh -c wrapper — it reads stdin directly
     const dir = IS_WINDOWS ? '%CLAUDE_PROJECT_DIR%' : '${CLAUDE_PROJECT_DIR:-.}';
-    return IS_WINDOWS
-        ? `node "${dir}/.claude/helpers/handlers/capture-handler.cjs" ${subcommand}`
-        : `node "${dir}/.claude/helpers/handlers/capture-handler.cjs" ${subcommand}`;
+    return `"${NODE_BIN}" "${dir}/.claude/helpers/handlers/capture-handler.cjs" ${subcommand}`;
 }
 /** Shorthand for standalone CJS helper scripts (no subcommand) */
 function standaloneHelperCmd(script) {
     if (IS_WINDOWS) {
-        return `cmd /c node "%CLAUDE_PROJECT_DIR%/.claude/helpers/${script}"`;
+        return `cmd /c "${NODE_BIN}" "%CLAUDE_PROJECT_DIR%/.claude/helpers/${script}"`;
     }
     // eslint-disable-next-line no-template-curly-in-string
     const dir = '${CLAUDE_PROJECT_DIR:-.}';
-    return `sh -c 'exec node "${dir}/.claude/helpers/${script}"'`;
+    return `sh -c 'exec "${NODE_BIN}" "${dir}/.claude/helpers/${script}"'`;
 }
 /**
  * Generate statusLine configuration for Claude Code
@@ -192,14 +206,14 @@ function generateStatusLineConfig(_options) {
     if (IS_WINDOWS) {
         return {
             type: 'command',
-            command: 'node "%CLAUDE_PROJECT_DIR%/.claude/helpers/statusline.cjs"',
+            command: `"${NODE_BIN}" "%CLAUDE_PROJECT_DIR%/.claude/helpers/statusline.cjs"`,
         };
     }
     // eslint-disable-next-line no-template-curly-in-string
     const dir = '${CLAUDE_PROJECT_DIR:-.}';
     return {
         type: 'command',
-        command: `sh -c 'exec node "${dir}/.claude/helpers/statusline.cjs"'`,
+        command: `sh -c 'exec "${NODE_BIN}" "${dir}/.claude/helpers/statusline.cjs"'`,
     };
 }
 /**

package/dist/src/init/settings-generator.js.map

@@ -1 +1 @@
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package/dist/src/knowledge/document-pipeline.d.ts

@@ -46,13 +46,25 @@ export declare function ingestDirectory(dirPath: string, scope?: string, opts?:
 }): Promise<BatchIngestResult>;
 /** Content hashes of the documents currently indexed under `rootDir`. */
 export declare function liveContentHashes(rootDir: string): Set<string>;
+/** True when a metadata log exists under `rootDir`.
+ *
+ * An empty live-hash set has two very different causes: the log is missing (we
+ * cannot judge what is current) or the log exists and every document has been
+ * removed (nothing is current). Collapsing them made `doc remove` of the LAST
+ * document a no-op — the tombstoned chunks came straight back in search.
+ *
+ * Reads the path directly instead of via `metadataPath`, which mkdir's. */
+export declare function hasKnowledgeMetadata(rootDir: string): boolean;
 /**
  * True when `key` is a document chunk whose version is no longer current.
- * Non-`doc:` keys are never superseded, and an empty `live` set means the
- * metadata log is missing/unreadable — in that case nothing is filtered,
- * because "no metadata" must not read as "everything is stale".
+ * Non-`doc:` keys are never superseded. When no metadata is available nothing
+ * is filtered, because "no metadata" must not read as "everything is stale".
+ *
+ * `metadataPresent` defaults to the old `live.size > 0` heuristic so existing
+ * two-argument callers keep their exact behaviour; pass `hasKnowledgeMetadata`
+ * to also filter correctly once the last document has been removed.
  */
-export declare function isSupersededKey(key: string, live: Set<string>): boolean;
+export declare function isSupersededKey(key: string, live: Set<string>, metadataPresent?: boolean): boolean;
 export declare function supersededOverfetchLimit(limit: number, live: Set<string>): number;
 export declare function searchKnowledge(query: string, opts?: {
     scope?: string;
@@ -64,9 +76,70 @@ export declare function searchKnowledge(query: string, opts?: {
     /** Return chunks from superseded document versions too, flagged
      *  `superseded: true`. Default false — see the note above `liveContentHashes`. */
     includeSuperseded?: boolean;
+    /** Skip cross-encoder reranking. Default false. */
+    skipRerank?: boolean;
 }): Promise<KnowledgeExcerpt[]>;
 export declare function listDocuments(rootDir?: string, scope?: string): DocumentMeta[];
 export declare function removeDocument(filePath: string, scope?: string, rootDir?: string): Promise<void>;
+/**
+ * True for macOS AppleDouble sidecars (`._name`).
+ *
+ * Matches on the BASENAME PREFIX only. A legitimate document may contain `._`
+ * elsewhere in its name (`v1._2-release.md`), or live under a dot-directory
+ * that is deliberately indexed (`.monodesign/` critique snapshots), and
+ * neither may be rejected.
+ */
+export declare function isResourceFork(filePath: string): boolean;
+export interface ReconcileReport {
+    /** Indexed documents whose source file is no longer on disk. */
+    missing: DocumentMeta[];
+    /** Total index entries examined. */
+    scanned: number;
+    /** False for a dry run — the default. */
+    applied: boolean;
+    /** Entries actually tombstoned. Always 0 when `applied` is false. */
+    removed: number;
+    /** Where removed records were archived, when anything was removed. */
+    archivePath?: string;
+}
+/**
+ * Reconcile the document index against the filesystem: find index entries whose
+ * source file no longer exists and, only when explicitly asked, tombstone them.
+ *
+ * WHY — `removeDocument` only ever tombstoned metadata, and nothing has ever
+ * compared the index against the disk, so a deleted file stayed searchable
+ * forever. Measured 2026-07-28: 109 of 257 live entries (42.4%) had no file
+ * behind them, including `docs/concepts/memory.md`. The Second Brain was
+ * answering questions from documents the user had deleted.
+ *
+ * WHY IT IS THIS CAUTIOUS — "drop the index entry when the file is missing" is
+ * a rule with a known catastrophic reading. A missing file is also an unmounted
+ * volume, a checked-out branch, a partial clone, or a permissions failure. Two
+ * guards were tried against real data and REJECTED; they are recorded here so
+ * they are not re-proposed:
+ *
+ *   - "abort if >50% of entries are missing" — the real, legitimate missing
+ *     fraction was 42.4%, so the threshold never fires in the one case we have.
+ *     Any threshold that would have blocked this reconcile is fitted to nothing.
+ *   - "only reconcile when the parent directory still exists" — 26 of the 109
+ *     missing files had no parent directory, because `docs/concepts`,
+ *     `docs/adrs` and `docs/commands` were legitimately deleted wholesale. A
+ *     deleted directory and an unmounted volume are indistinguishable there.
+ *
+ * What does discriminate is the ROOT. An intact, readable root carrying a
+ * metadata log means the tree is genuinely present, so a missing file is
+ * genuinely gone. A missing root means nothing beneath it is knowable and
+ * nothing may be removed — hence throw rather than reconcile.
+ *
+ * Removal tombstones metadata; it does not delete store rows. Chunks stay on
+ * disk and fall out of search through the existing superseded filter, which
+ * keeps this consistent with the mark-don't-destroy rule and leaves the whole
+ * operation reversible from the archive.
+ */
+export declare function reconcileIndex(rootDir?: string, opts?: {
+    scope?: string;
+    apply?: boolean;
+}): Promise<ReconcileReport>;
 export declare function exportToOKF(outputDir: string, rootDir?: string, scope?: string): Promise<{
     exported: number;
     outputDir: string;

package/dist/src/knowledge/document-pipeline.d.ts.map

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