@monoes/monomindcli 2.3.3 → 2.4.0

package/.claude/skills/mastermind-skills/stoporg.md

@@ -57,13 +57,17 @@ echo "Stop requested for org '${org_name}' (v2 daemon exits within 2s)."
 ```
 - Exit.
 
+<!-- LEGACY-ORG-V1: remove this branch when v1 orgs are gone -->
+Everything below this point only runs for v1 orgs — v2 orgs already exited above.
+
 If `current_status == "stopped"`:
 - Print: "Org '<org_name>' is already stopped."
 - Exit.
 
 ---
 
-## Step 2 — Set Status to Stopped and Clear next_run
+<!-- LEGACY-ORG-V1: remove this step when v1 orgs are gone -->
+## Step 2 — Set Status to Stopped and Clear next_run (v1 only)
 
 ```bash
 orgFile=".monomind/orgs/${org_name}.json"
@@ -74,7 +78,8 @@ jq '.status = "stopped" | if .loop then .loop.next_run = null else . end' "$orgF
 
 ---
 
-## Step 3 — Write Stop File (for any running boss agents)
+<!-- LEGACY-ORG-V1: remove this step when v1 orgs are gone -->
+## Step 3 — Write Stop File (for any running boss agents, v1 only)
 
 Any persistent boss agent checks for this file at the start of each loop iteration:
 
@@ -85,6 +90,7 @@ touch ".monomind/orgs/.stops/${org_name}.stop"
 
 ---
 
+<!-- LEGACY-ORG-V1: remove this step when v1 orgs are gone -->
 ## Step 4 — Emit Dashboard Events
 
 ```bash
@@ -103,7 +109,8 @@ curl -s -X POST "${CTRL_URL}/api/mastermind/event" -H "x-monomind-token: $(cat "
 
 ---
 
-## Step 5 — Report to User
+<!-- LEGACY-ORG-V1: remove this step when v1 orgs are gone -->
+## Step 5 — Report to User (v1 only)
 
 ```
 ✓ Org "<org_name>" stopped.

package/.claude/skills/mastermind-skills/tasks.md

@@ -35,13 +35,16 @@ If `caller` is not "command", load brain context following _protocol.md Brain Lo
 ## Step 1 — Load Org Config
 
 ```bash
+# LEGACY-ORG-V1: this whole board/column lookup is the pre-v2 board-backed
+# task model — boards belong to the legacy v1 runner, see runorgv1.
 orgFile=".monomind/orgs/${org_name}.json"
 board_id=$(jq -r '.board_id // empty' "$orgFile")
 todo_col=$(jq -r '.todo_col_id // empty' "$orgFile")
 doing_col=$(jq -r '.doing_col_id // empty' "$orgFile")
 done_col=$(jq -r '.done_col_id // empty' "$orgFile")
 
-[ -z "$board_id" ] && { echo "ERROR: org config missing board_id — run /mastermind:createorg to rebuild."; exit 1; }
+[ -z "$board_id" ] && { echo "ERROR: org config missing board_id — boards belong to the legacy v1 runner, see runorgv1."; exit 1; }
+# end LEGACY-ORG-V1
 ```
 
 ---

package/README.md

@@ -102,11 +102,25 @@ monomind org run content-team --task "Build and publish 3 blog posts per week"
 #   assigns work to role agents, coordinates until the task completes
 #   or you stop it. Every event streams into the dashboard above.
 
-monomind org status content-team    # runtime state
+monomind org status content-team    # runtime state (detects crashed daemons)
 monomind org stop content-team      # request a graceful stop
-monomind org list                   # every org + status
+monomind org list                   # every org + roles, schedule, status
 ```
 
+### Observe, steer, and let it learn
+
+```bash
+monomind org logs content-team --follow      # live event stream in the terminal
+monomind org report content-team             # outcome, per-role tokens vs budget, assets
+monomind org questions content-team          # what agents asked via ask_human
+monomind org answer content-team q-123 "yes" # answer live or queued — no dashboard needed
+monomind org create blog --template content-team --goal "3 posts/week"   # scaffold from a template
+monomind org validate blog                   # schema + structural checks before running
+monomind org run blog --dry-run              # preview each role's exact briefing
+```
+
+Orgs are self-improving: the coordinator records every run's outcome (`org_complete`), the next run is briefed on it, and all agents can query accumulated cross-run memory with `org_recall` — a scheduled org gets smarter every cycle instead of starting cold. Crashed agent sessions restart automatically with backoff.
+
 ### What runs under the hood
 
 | What | How |
@@ -196,9 +210,28 @@ monomind org run my-team          # run your first AI org (see .monomind/orgs/sa
 
 ---
 
+## 📚 Second Brain — Your Documents, Retrieved by Meaning
+
+Drop documents (Markdown, TXT, PDF, DOCX) anywhere in your project and run `monomind init` — the Second Brain activates itself. No flags, no configuration, no accounts. Everything runs on your machine: a local embedding model (MiniLM via transformers.js) and a local SQLite vector store. **Your notes never leave your computer.**
+
+From then on, every substantive prompt you type in Claude Code is automatically answered *with your own knowledge in context* — a hook retrieves the most relevant excerpts semantically (the always-on dashboard keeps the model warm, ~60ms per lookup) and injects them before Claude starts thinking. Ask "when do new parents get time off" and the parental-leave section of your handbook is already on the table, even though you never used the word "leave".
+
+```bash
+monomind doc ingest ./notes        # index documents (init + session-start do this automatically)
+monomind doc search -q "pricing psychology in checkout"   # semantic search, by meaning not keywords
+monomind doc list                  # what's indexed
+monomind doc export                # portable OKF bundle — move your brain between machines
+```
+
+Retrieval quality is a tested invariant, not a hope: a golden-set eval (paraphrase queries against notes written in different vocabulary) runs in CI with an 80% recall bar.
+
+> **Privacy note:** the embedding model (~90MB) is fetched once from HuggingFace's CDN when your first document is indexed, then cached locally forever. That download is the only outbound request the Second Brain ever makes — your documents and queries never leave your machine. Offline at first index? Search degrades gracefully to keyword matching and `monomind doctor` tells you how to warm up later.
+
+---
+
 ## 🧠 Memory That Persists
 
-Every session, every agent, every org writes to a persistent memory store — a JSON pattern store with episodic recall that survives across sessions. The next time you run anything, Monomind already knows what was built, what failed, and which patterns work.
+Every session, every agent, every org writes to a persistent memory store that survives across sessions — text plus embedding vectors in local SQLite (better-sqlite3, pure-WASM fallback), embedded by a local model. No cloud vector database, no API keys, no data transmission. The next time you run anything, Monomind already knows what was built, what failed, and which patterns work.
 
 ```mermaid
 graph TD
@@ -217,7 +250,7 @@ graph TD
 
 ```bash
 monomind memory store "key insight" --namespace my-project
-monomind memory search "auth implementation"     # BM25 + semantic hybrid
+monomind memory search "auth implementation"     # semantic (local embeddings) with keyword fallback
 ```
 
 ---

package/dist/src/commands/cleanup.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cleanup.d.ts","sourceRoot":"","sources":["../../../src/commands/cleanup.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAmC1E,6EAA6E;AAC7E,UAAU,gBAAgB;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,IAAI,EAAE,MAAM,CAAC;CACd;AAMD;;;;;;;;;;;;GAYG;AACH,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,OAAO,GAAG,gBAAgB,EAAE,CA8C7G;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,gBAAgB,EAAE,CAwC7E;AAwFD;;GAEG;AACH,eAAO,MAAM,cAAc,EAAE,OA4P5B,CAAC;eAEa,cAAc"}

package/dist/src/commands/cleanup.js

@@ -57,16 +57,23 @@ export function findOrphanedProjectData(baseDir, now, aggressive) {
         if (name.startsWith('.'))
             continue;
         const dir = join(baseDir, name);
-        let mtime = 0;
         try {
-            const st = lstatSync(dir);
-            if (!st.isDirectory())
+            if (!lstatSync(dir).isDirectory())
                 continue;
-            mtime = st.mtimeMs;
         }
         catch {
             continue;
         }
+        // Staleness must consider the files writes actually touch: appends to
+        // lancedb/memory.db and origin.json refreshes do NOT bump the slug dir's
+        // own mtime, so an actively-used project would otherwise look 30d stale.
+        const mtimeOf = (p) => { try {
+            return lstatSync(p).mtimeMs;
+        }
+        catch {
+            return 0;
+        } };
+        const mtime = Math.max(mtimeOf(dir), mtimeOf(join(dir, 'origin.json')), mtimeOf(join(dir, 'lancedb', 'memory.db')), mtimeOf(join(dir, 'memory.db')));
         const originFile = join(dir, 'origin.json');
         let originPath = null;
         let hasOrigin = false;
@@ -76,13 +83,28 @@ export function findOrphanedProjectData(baseDir, now, aggressive) {
         }
         catch { /* no/corrupt marker */ }
         if (hasOrigin && originPath && existsSync(originPath)) {
+            // NOTE: the directory is *named* lancedb for historical reasons, but the
+            // current SQLite engine keeps its LIVE memory.db inside it. Only genuine
+            // LanceDB leftovers (*.lance datasets, no memory.db) are dead weight.
             const lance = join(dir, 'lancedb');
-            if (existsSync(lance))
-                out.push({ path: lance, description: `dead lancedb store (project: ${originPath})`, size: 0 });
+            if (existsSync(lance) && !existsSync(join(lance, 'memory.db'))) {
+                let hasLanceData = false;
+                try {
+                    hasLanceData = readdirSync(lance).some(f => f.endsWith('.lance') || f === '__manifest');
+                }
+                catch { /* unreadable — leave it */ }
+                if (hasLanceData)
+                    out.push({ path: lance, description: `dead lancedb store (project: ${originPath})`, size: 0 });
+            }
             continue;
         }
-        if (hasOrigin) {
-            out.push({ path: dir, description: `orphaned project data (origin gone: ${originPath})`, size: 0 });
+        if (hasOrigin && originPath) {
+            // Only classify as orphaned when the origin's PARENT exists — an
+            // unmounted volume / disconnected network share makes the whole subtree
+            // vanish temporarily, and that must never count as "project deleted".
+            if (existsSync(dirname(originPath))) {
+                out.push({ path: dir, description: `orphaned project data (origin gone: ${originPath})`, size: 0 });
+            }
         }
         else if (aggressive || now - mtime > UNKNOWN_DIR_MAX_AGE_MS) {
             out.push({ path: dir, description: aggressive ? 'unverifiable project data (no origin marker)' : 'unverifiable project data (untouched >30d)', size: 0 });

package/dist/src/commands/cleanup.js.map

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package/dist/src/commands/doc.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doc.d.ts","sourceRoot":"","sources":["../../../src/commands/doc.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAqK1E,eAAO,MAAM,UAAU,EAAE,OA2BxB,CAAC;eAEa,UAAU"}
+{"version":3,"file":"doc.d.ts","sourceRoot":"","sources":["../../../src/commands/doc.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAiM1E,eAAO,MAAM,UAAU,EAAE,OA2BxB,CAAC;eAEa,UAAU"}

package/dist/src/commands/doc.js

@@ -3,22 +3,41 @@
  */
 import * as path from 'node:path';
 import { output } from '../output.js';
+import { getGlobalBrainDir } from '../memory/memory-bridge.js';
 const ingestCommand = {
     name: 'ingest',
     description: 'Ingest documents into the knowledge base',
     options: [
-        { name: 'scope', short: 's', description: 'Knowledge scope (default: shared)', type: 'string', default: 'shared' },
+        // No `default` on scope: the auto-global routing below must be able to
+        // tell "user typed --scope shared" apart from "user typed nothing" — a
+        // parser-injected default makes them indistinguishable.
+        { name: 'scope', short: 's', description: 'Knowledge scope (default: shared; auto-routes to global for paths outside the project)', type: 'string' },
+        { name: 'global', short: 'g', description: 'Ingest into the personal cross-project global brain (~/.monomind/global-brain)', type: 'boolean' },
     ],
     examples: [
         { command: 'monomind doc ingest ./docs', description: 'Ingest all docs in a directory' },
+        { command: 'monomind doc ingest ~/notes --global', description: 'Ingest into the global brain (auto-detected for paths outside the project)' },
         { command: 'monomind doc ingest report.pdf', description: 'Ingest a single file' },
     ],
     action: async (ctx) => {
         const target = ctx.args[0] || '.';
-        const scope = String(ctx.flags.scope || 'shared');
         const { ingestDocument, ingestDirectory } = await import('../knowledge/document-pipeline.js');
         const fs = await import('node:fs');
         const resolved = path.resolve(target);
+        // Zero-decision routing: an explicit --global wins; otherwise paths OUTSIDE
+        // the current project belong to the personal brain (a project store keyed
+        // to this cwd would never see them again from another project).
+        let scope = String(ctx.flags.scope || 'shared');
+        if (ctx.flags.global === true) {
+            scope = 'global';
+        }
+        else if (!ctx.flags.scope) {
+            const relToCwd = path.relative(process.cwd(), resolved);
+            if (relToCwd.startsWith('..') || path.isAbsolute(relToCwd)) {
+                scope = 'global';
+                output.writeln(output.dim(`  ${target} is outside this project — ingesting into the global brain (use --scope shared to force project scope)`));
+            }
+        }
         const spinner = output.createSpinner({ text: 'Indexing documents...' });
         spinner.start();
         try {
@@ -68,9 +87,11 @@ const searchDocCommand = {
         { name: 'limit', short: 'l', description: 'Max results (default: 10)', type: 'number', default: 10 },
         { name: 'scope', short: 's', description: 'Knowledge scope (default: shared)', type: 'string', default: 'shared' },
         { name: 'min-score', description: 'Minimum similarity (default: 0.3)', type: 'number', default: 0.3 },
+        { name: 'store', description: 'Which store(s): project | global | all (default: all — project results win ties)', type: 'string', default: 'all' },
     ],
     examples: [
-        { command: 'monomind doc search -q "authentication flow"', description: 'Search for auth docs' },
+        { command: 'monomind doc search -q "authentication flow"', description: 'Search project + global brain' },
+        { command: 'monomind doc search -q "pricing notes" --store global', description: 'Search only the personal global brain' },
     ],
     action: async (ctx) => {
         const query = String(ctx.flags.query || ctx.args[0] || '');
@@ -79,10 +100,12 @@ const searchDocCommand = {
             return { success: false, exitCode: 1 };
         }
         const { searchKnowledge } = await import('../knowledge/document-pipeline.js');
+        const storeFlag = String(ctx.flags.store || 'all');
         const excerpts = await searchKnowledge(query, {
             scope: String(ctx.flags.scope || 'shared'),
             limit: Number(ctx.flags.limit || 10),
             minScore: Number(ctx.flags['min-score'] || 0.3),
+            store: storeFlag === 'project' || storeFlag === 'global' ? storeFlag : 'all',
         });
         if (!excerpts.length) {
             output.writeln(output.dim('No results found.'));
@@ -92,7 +115,8 @@ const searchDocCommand = {
         output.writeln();
         for (let i = 0; i < excerpts.length; i++) {
             const ex = excerpts[i];
-            output.writeln(`${output.highlight(`${i + 1}.`)} ${output.dim(`(${ex.similarity.toFixed(3)})`)} ${ex.filePath || 'unknown'}`);
+            const origin = ex.scope === 'global' ? ` ${output.dim('[global]')}` : '';
+            output.writeln(`${output.highlight(`${i + 1}.`)} ${output.dim(`(${ex.similarity.toFixed(3)})`)} ${ex.filePath || 'unknown'}${origin}`);
             const preview = ex.text.length > 200 ? ex.text.slice(0, 200) + '...' : ex.text;
             output.writeln(`   ${output.dim(preview)}`);
             output.writeln();
@@ -105,11 +129,13 @@ const listDocCommand = {
     description: 'List indexed documents',
     options: [
         { name: 'scope', short: 's', description: 'Knowledge scope', type: 'string' },
+        { name: 'global', short: 'g', description: 'List the personal cross-project global brain', type: 'boolean' },
     ],
     action: async (ctx) => {
         const { listDocuments } = await import('../knowledge/document-pipeline.js');
-        const scope = ctx.flags.scope ? String(ctx.flags.scope) : undefined;
-        const docs = listDocuments(process.cwd(), scope);
+        const isGlobal = ctx.flags.global === true;
+        const scope = isGlobal ? 'global' : ctx.flags.scope ? String(ctx.flags.scope) : undefined;
+        const docs = listDocuments(isGlobal ? getGlobalBrainDir() : process.cwd(), scope);
         if (!docs.length) {
             output.writeln(output.dim('No documents indexed. Run: monomind doc ingest <path>'));
             return { success: true, data: [] };
@@ -133,15 +159,17 @@ const exportDocCommand = {
     options: [
         { name: 'output', short: 'o', description: 'Output directory', type: 'string', default: '.monomind/knowledge-export' },
         { name: 'scope', short: 's', description: 'Knowledge scope (default: shared)', type: 'string', default: 'shared' },
+        { name: 'global', short: 'g', description: 'Export the personal cross-project global brain (portable between machines)', type: 'boolean' },
     ],
     action: async (ctx) => {
         const { exportToOKF } = await import('../knowledge/document-pipeline.js');
         const outDir = path.resolve(String(ctx.flags.output || '.monomind/knowledge-export'));
-        const scope = String(ctx.flags.scope || 'shared');
+        const isGlobal = ctx.flags.global === true;
+        const scope = isGlobal ? 'global' : String(ctx.flags.scope || 'shared');
         const spinner = output.createSpinner({ text: 'Exporting to OKF...' });
         spinner.start();
         try {
-            const result = await exportToOKF(outDir, process.cwd(), scope);
+            const result = await exportToOKF(outDir, isGlobal ? getGlobalBrainDir() : process.cwd(), scope);
             spinner.succeed(`Exported ${result.exported} documents to ${result.outputDir}`);
             return { success: true, data: result };
         }

package/dist/src/commands/doc.js.map

@@ -1 +1 @@
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package/dist/src/commands/doctor-project-checks.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor-project-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-project-checks.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAOH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAS1D,YAAY,EAAE,WAAW,EAAE,CAAC;AAE5B,wBAAsB,eAAe,IAAI,OAAO,CAAC,WAAW,CAAC,CAiB5D;AAED,wBAAsB,mBAAmB,IAAI,OAAO,CAAC,WAAW,CAAC,CAahE;AAED;;8DAE8D;AAC9D,wBAAsB,qBAAqB,IAAI,OAAO,CAAC,WAAW,CAAC,CA8BlE;AAED,wBAAsB,YAAY,IAAI,OAAO,CAAC,WAAW,CAAC,CAyBzD;AAED,wBAAsB,eAAe,IAAI,OAAO,CAAC,WAAW,CAAC,CAsB5D;AAED,wBAAsB,cAAc,IAAI,OAAO,CAAC,WAAW,CAAC,CA6B3D;AAED,wBAAsB,uBAAuB,IAAI,OAAO,CAAC,WAAW,CAAC,CA+BpE;AAED,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,WAAW,CAAC,CAwB9D;AAoED,wBAAsB,eAAe,IAAI,OAAO,CAAC,OAAO,CAAC,CAiBxD;AAED,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,WAAW,CAAC,CAa9D;AAoDD,wBAAsB,sBAAsB,IAAI,OAAO,CAAC,WAAW,CAAC,CAWnE;AAmBD,wBAAsB,sBAAsB,IAAI,OAAO,CAAC,WAAW,CAAC,CAmBnE;AAED,wBAAsB,kBAAkB,IAAI,OAAO,CAAC,WAAW,CAAC,CAuC/D;AAED,wBAAsB,kBAAkB,IAAI,OAAO,CAAC,WAAW,CAAC,CAwB/D;AAkBD;;;;;GAKG;AACH,wBAAsB,qBAAqB,IAAI,OAAO,CAAC,WAAW,CAAC,CAiClE;AAED;;GAEG;AACH,wBAAsB,0BAA0B,IAAI,OAAO,CAAC,WAAW,CAAC,CA6BvE;AAED;;GAEG;AACH,wBAAsB,sBAAsB,IAAI,OAAO,CAAC,WAAW,CAAC,CAyBnE"}

package/dist/src/commands/doctor-project-checks.js

@@ -52,19 +52,32 @@ export async function checkSecondBrainModel() {
     if (!existsSync(join(process.cwd(), '.monomind', 'knowledge', 'chunks.jsonl'))) {
         return { name, status: 'pass', message: 'No knowledge base in this project (nothing to check)' };
     }
-    let pkgDir;
+    let entryPath = null;
     try {
-        // exports map blocks package.json — resolve the entry file and walk up
-        const entry = await import.meta.resolve?.('@huggingface/transformers');
-        if (!entry)
-            throw new Error('resolver unavailable');
-        pkgDir = fileURLToPath(entry).replace(/\/dist\/.*$/, '');
-    }
-    catch {
-        return { name, status: 'warn', message: '@huggingface/transformers not installed — semantic search degraded to keyword matching', fix: 'reinstall monomind (the model dependency is optional and may have failed to build)' };
+        // exports map blocks package.json — resolve the entry file, then walk UP
+        // with path ops (no separator-sensitive regex: '/dist/'.replace broke on
+        // Windows paths, and any install layout without a dist segment).
+        // import.meta.resolve is missing on Node 20.0–20.5; fall back to CJS resolve.
+        const viaEsm = import.meta.resolve?.('@huggingface/transformers');
+        if (viaEsm)
+            entryPath = fileURLToPath(await viaEsm);
+    }
+    catch { /* try CJS below */ }
+    if (!entryPath) {
+        try {
+            const { createRequire } = await import('node:module');
+            entryPath = createRequire(import.meta.url).resolve('@huggingface/transformers');
+        }
+        catch {
+            return { name, status: 'warn', message: '@huggingface/transformers not installed — semantic search degraded to keyword matching', fix: 'reinstall monomind (the model dependency is optional and may have failed to build)' };
+        }
     }
+    // Walk up from the entry file to the package root (the dir named 'transformers').
+    let pkgDir = dirname(entryPath);
+    while (pkgDir !== dirname(pkgDir) && !pkgDir.endsWith('transformers'))
+        pkgDir = dirname(pkgDir);
     const modelCache = join(pkgDir, '.cache', 'Xenova');
-    if (existsSync(modelCache)) {
+    if (pkgDir.endsWith('transformers') && existsSync(modelCache)) {
         return { name, status: 'pass', message: 'Local embedding model cached — semantic search active' };
     }
     return { name, status: 'warn', message: 'Embedding model not downloaded yet — searches use keyword matching until it is', fix: 'run once while online: monomind doc search -q "warmup" (downloads ~90MB locally, one time)' };