@monoes/monomindcli 2.16.3 → 2.16.5

package/dist/src/init/file-guard.js

@@ -0,0 +1,239 @@
+/**
+ * Edit-preserving writes for what init ships into a project.
+ *
+ * Files (skills, agents, commands, helpers), keyed by project-relative path
+ * against the sha256 recorded in `.monomind/init-manifest.json` `files`:
+ *  - missing, or already identical to the new content: written / left;
+ *  - exactly what monomind left there last time: an untouched install, so it
+ *    is replaced with the new version;
+ *  - different from what monomind left: the user edited it. It is kept, the
+ *    new version is written beside it as `<file>.monomind-new`, and the run
+ *    reports it. `--force` does not change this;
+ *  - never recorded (installed before hashes existed): provenance unknown. A
+ *    file that matches the new version once ownership-marker lines and blank
+ *    lines are ignored is adopted. Otherwise it is kept like an edit, unless
+ *    the caller replaces unrecorded files (`init --force`, and `init upgrade`
+ *    for helpers), in which case it is first copied to the run's backup
+ *    directory `.monomind/backups/<run>/`.
+ * Hashes are taken at the end of the run (`finalize`), because platform
+ * adapters and doctor rewrite some of these files after they are copied.
+ *
+ * Managed blocks (CLAUDE.md, AGENTS.md, GEMINI.md, shared_instructions.md),
+ * keyed `<file>#<marker>` in `blocks`: a block whose body differs from what
+ * monomind last wrote is left alone with a warning — or, under `--force`,
+ * backed up and replaced, and the run says so.
+ */
+import { createHash } from 'node:crypto';
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import { backup } from '../platform-adapters/mutation.js';
+import { mergeGeneratedBlock, readGeneratedBlock } from './managed-block.js';
+import { atomicWriteFile, readInitManifest, recordManifestHashes } from './shared.js';
+export const NEW_VERSION_SUFFIX = '.monomind-new';
+/** Backup directories kept by pruneBackups (retirement ones are never pruned). */
+export const BACKUPS_KEPT = 5;
+const sha256 = (data) => createHash('sha256').update(data).digest('hex');
+/** Content with ownership-marker lines and blank lines removed, for adopting
+ *  an unrecorded file that differs from the shipped one only by those. */
+const withoutMarkers = (text) => text
+    .split(/\r?\n/)
+    .filter((line) => line.trim() !== '' && !/^\s*(?:#|\/\/|<!--)\s*monomind:(?:start|end)\s/.test(line))
+    .join('\n');
+export class FileGuard {
+    targetDir;
+    options;
+    /** Project-relative paths kept because the user edited them. */
+    kept = [];
+    /** Messages the run must show the user. */
+    warnings = [];
+    backupDir;
+    files;
+    blocks;
+    touched = new Set();
+    constructor(targetDir, options) {
+        this.targetDir = targetDir;
+        this.options = options;
+        const manifest = readInitManifest(targetDir);
+        this.files = { ...(manifest?.files ?? {}) };
+        this.blocks = { ...(manifest?.blocks ?? {}) };
+        this.backupDir = path.join(targetDir, '.monomind', 'backups', `${Date.now()}-${process.pid}`);
+    }
+    rel(file) {
+        return path.relative(this.targetDir, file).split(path.sep).join('/');
+    }
+    /** Absolute paths of the files kept this run, for installs that must skip them. */
+    keptPaths() {
+        return new Set(this.kept.map((rel) => path.join(this.targetDir, rel)));
+    }
+    backup(file) {
+        const copy = backup(file, this.targetDir, false, this.backupDir);
+        return copy ? this.rel(copy) : this.rel(this.backupDir);
+    }
+    /** Write `content` to `dest` unless that would overwrite a user edit. */
+    write(dest, content, mode) {
+        const rel = this.rel(dest);
+        const next = Buffer.isBuffer(content) ? content : Buffer.from(content);
+        const newVersion = `${dest}${NEW_VERSION_SUFFIX}`;
+        let outcome = 'written';
+        if (fs.existsSync(dest)) {
+            const disk = fs.readFileSync(dest);
+            const recorded = this.files[rel];
+            if (disk.equals(next))
+                outcome = 'unchanged';
+            else if (recorded ? sha256(disk) !== recorded : !this.adoptable(disk, next, dest)) {
+                atomicWriteFile(newVersion, next);
+                if (!this.kept.includes(rel))
+                    this.kept.push(rel);
+                return 'kept';
+            }
+        }
+        if (outcome === 'written') {
+            fs.mkdirSync(path.dirname(dest), { recursive: true });
+            atomicWriteFile(dest, next);
+            if (mode !== undefined)
+                fs.chmodSync(dest, mode);
+        }
+        this.files[rel] = sha256(next);
+        this.touched.add(rel);
+        if (fs.existsSync(newVersion))
+            fs.rmSync(newVersion);
+        return outcome;
+    }
+    /** An unrecorded file may be replaced: it is ours modulo markers, or the
+     *  caller replaces unrecorded files and a backup was taken first. */
+    adoptable(disk, next, dest) {
+        if (withoutMarkers(disk.toString('utf-8')) === withoutMarkers(next.toString('utf-8')))
+            return true;
+        if (!this.options.replaceUnrecorded)
+            return false;
+        this.warnings.push(`${this.rel(dest)}: replaced; your previous copy is in ${this.backup(dest)}`);
+        return true;
+    }
+    copyFile(src, dest) {
+        return this.write(dest, fs.readFileSync(src), fs.statSync(src).mode & 0o777);
+    }
+    /** copyDirRecursive through the guard. */
+    copyDir(src, dest) {
+        for (const entry of fs.readdirSync(src, { withFileTypes: true })) {
+            // Skip exFAT/macOS AppleDouble junk files (e.g. "._foo.js").
+            if (entry.name.startsWith('._'))
+                continue;
+            const from = path.join(src, entry.name);
+            const to = path.join(dest, entry.name);
+            if (entry.isDirectory())
+                this.copyDir(from, to);
+            else
+                this.copyFile(from, to);
+        }
+    }
+    /**
+     * The content to write for `file` with `generated` merged into its
+     * `marker` block, or null when the block was edited and must be kept.
+     */
+    mergeBlock(file, existing, marker, generated) {
+        const key = `${this.rel(file)}#${marker}`;
+        const body = readGeneratedBlock(existing, marker);
+        const recorded = this.blocks[key];
+        if (body !== null && recorded && sha256(body) !== recorded) {
+            if (!this.options.force) {
+                this.warnings.push(`${this.rel(file)}: text inside the monomind-block:${marker} markers was edited — left as is. ` +
+                    'Move your text outside the markers; `init --force` replaces the block (with a backup).');
+                return null;
+            }
+            this.warnings.push(`${this.rel(file)}: edited monomind-block:${marker} replaced (--force); previous file in ${this.backup(file)}`);
+        }
+        else if (body !== null && !recorded && body !== generated.trimEnd()) {
+            // Written before block hashes existed: it may hold edits, so keep a copy.
+            this.warnings.push(`${this.rel(file)}: monomind-block:${marker} differed from the generated text and was refreshed; previous file in ${this.backup(file)}`);
+        }
+        const merged = mergeGeneratedBlock(existing, marker, generated);
+        this.blocks[key] = sha256(readGeneratedBlock(merged, marker) ?? '');
+        recordManifestHashes(this.targetDir, 'blocks', this.blocks);
+        return merged;
+    }
+    /** Record hashes for what was written; call once every writer has run. */
+    finalize() {
+        for (const rel of this.touched) {
+            const file = path.join(this.targetDir, rel);
+            if (fs.existsSync(file))
+                this.files[rel] = sha256(fs.readFileSync(file));
+        }
+        recordManifestHashes(this.targetDir, 'files', this.files);
+    }
+    /** Persist hashes now (a writer called outside a full run has no finalize). */
+    flush() {
+        recordManifestHashes(this.targetDir, 'files', this.files);
+    }
+}
+const guards = new WeakMap();
+/** The run's guard, created on first use. */
+export function guardFor(targetDir, options, result) {
+    let guard = guards.get(result);
+    if (!guard) {
+        guard = new FileGuard(targetDir, {
+            replaceUnrecorded: options.force === true,
+            force: options.force === true && options.preserveEdits !== true,
+        });
+        guards.set(result, guard);
+    }
+    return guard;
+}
+/** Record the run's hashes and move its kept files and warnings into `result`. */
+export function finalizeGuard(result) {
+    const guard = guards.get(result);
+    if (!guard)
+        return;
+    guard.finalize();
+    result.kept = [...guard.kept];
+    result.warnings = [...(result.warnings ?? []), ...guard.warnings];
+}
+/**
+ * Whether `file` is one init kept because the user edited it: a
+ * `.monomind-new` copy sits beside it, or its content no longer matches the
+ * hash init recorded. Other tools that refresh shipped files (doctor --fix)
+ * must leave such a file alone.
+ */
+export function isKeptUserEdit(targetDir, file) {
+    if (fs.existsSync(`${file}${NEW_VERSION_SUFFIX}`))
+        return true;
+    const rel = path.relative(targetDir, file).split(path.sep).join('/');
+    const recorded = readInitManifest(targetDir)?.files?.[rel];
+    try {
+        return recorded !== undefined && sha256(fs.readFileSync(file)) !== recorded;
+    }
+    catch {
+        return false;
+    }
+}
+/** The warning a run prints for the files it kept, or '' when there are none. */
+export function formatKeptFiles(kept) {
+    if (!kept?.length)
+        return '';
+    return [
+        `Kept ${kept.length} file(s) you edited; the new version of each is beside it as <file>${NEW_VERSION_SUFFIX} — merge what you want, then delete that copy:`,
+        ...kept.map((rel) => `  ${rel}`),
+    ].join('\n');
+}
+/**
+ * Keep the newest `keep` backup directories. A directory holding retired
+ * entries (`retired/`) is never removed: the manifest points at it and it can
+ * be the only copy of a user's file.
+ */
+export function pruneBackups(targetDir, keep = BACKUPS_KEPT) {
+    const root = path.join(targetDir, '.monomind', 'backups');
+    let names;
+    try {
+        names = fs.readdirSync(root).filter((name) => /^\d+-\d+$/.test(name));
+    }
+    catch {
+        return [];
+    }
+    const prunable = names
+        .filter((name) => !fs.existsSync(path.join(root, name, 'retired')))
+        .sort((a, b) => Number(b.split('-')[0]) - Number(a.split('-')[0]) || b.localeCompare(a));
+    const removed = prunable.slice(keep);
+    for (const name of removed)
+        fs.rmSync(path.join(root, name), { recursive: true, force: true });
+    return removed;
+}
+//# sourceMappingURL=file-guard.js.map

package/dist/src/init/file-guard.js.map

@@ -0,0 +1 @@
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package/dist/src/init/helpers-generator.d.ts

@@ -65,6 +65,13 @@ export interface HelperFileSpec {
     generate?: () => string;
 }
 export declare const HELPER_FILES: Record<string, HelperFileSpec>;
+/**
+ * Permissions for a helper file, the same from `init` and `init upgrade`.
+ * Every .cjs/.js helper is run as `node <file>` (hooks, statusline, the codex
+ * and opencode bridges), so only what is executed directly is 0755: shell
+ * scripts, .mjs entry points (shebang) and the extensionless git hooks.
+ */
+export declare function helperFileMode(name: string): number;
 export declare const FORCE_SYNC_HELPERS: string[];
 export declare const DOCTOR_TRACKED_HELPERS: string[];
 export declare const OBSOLETE_HELPER_NAMES: string[];

package/dist/src/init/helpers-generator.d.ts.map

@@ -1 +1 @@
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package/dist/src/init/helpers-generator.js

@@ -1314,6 +1314,10 @@ export const HELPER_FILES = {
     // the registry with, and router.cjs degrades to its built-in FALLBACK_SKILLS
     // rather than breaking. init/upgrade run it; the index is never copied.
     'build-skill-registry.cjs': { forceSync: true, doctorTracked: true },
+    // Builds .monomind/registry.json (project, ~/.claude/agents and extra
+    // agents); the CLI's src/agents/registry-builder.ts loads the same file, and
+    // SessionStart (handlers/pick-core.cjs) rebuilds a stale registry with it.
+    'agent-registry.cjs': { forceSync: true, doctorTracked: true },
     // The Org skill library read from CommonJS; required by build-skill-registry.cjs
     // and jev-catalog.cjs.
     'org-skill-index.cjs': { forceSync: true, doctorTracked: true },
@@ -1339,6 +1343,15 @@ export const HELPER_FILES = {
     'pre-commit': { generate: generatePreCommitHook },
     'post-commit': { generate: generatePostCommitHook },
 };
+/**
+ * Permissions for a helper file, the same from `init` and `init upgrade`.
+ * Every .cjs/.js helper is run as `node <file>` (hooks, statusline, the codex
+ * and opencode bridges), so only what is executed directly is 0755: shell
+ * scripts, .mjs entry points (shebang) and the extensionless git hooks.
+ */
+export function helperFileMode(name) {
+    return /\.(sh|mjs)$/.test(name) || !/\.[^./]+$/.test(name) ? 0o755 : 0o644;
+}
 export const FORCE_SYNC_HELPERS = Object.keys(HELPER_FILES).filter((name) => HELPER_FILES[name].forceSync);
 export const DOCTOR_TRACKED_HELPERS = Object.keys(HELPER_FILES).filter((name) => HELPER_FILES[name].doctorTracked);
 // Helper file names this product shipped in the past under a name it no

package/dist/src/init/helpers-generator.js.map

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package/dist/src/init/init-memory.d.ts

@@ -5,10 +5,20 @@
  * it to `.claude/memory.db` — but idempotently: an existing database is left
  * exactly as it is, never recreated.
  */
+import type { MemorySeed } from './shared-instructions-generator.js';
 import type { InitMemoryResult } from './types.js';
 export declare function initProjectMemory(cwd: string, options: {
     syncToClaude: boolean;
 }): Promise<InitMemoryResult>;
+/**
+ * Store the seeds shared_instructions generation detected, in-process, in
+ * `targetDir`'s memory store — the one `monomind memory store` run there
+ * writes to, which the bridge resolves from MONOMIND_CWD (else the cwd), so
+ * it is pinned to `targetDir` for the duration. Best-effort; returns how
+ * many were stored. No embeddings are computed, so init neither loads a
+ * model nor goes online.
+ */
+export declare function seedProjectMemory(targetDir: string, seeds: readonly MemorySeed[]): Promise<number>;
 /** Print the outcome; a failure is a warning with the fix, never an error. */
 export declare function reportProjectMemory(memory: InitMemoryResult | undefined): void;
 //# sourceMappingURL=init-memory.d.ts.map

package/dist/src/init/init-memory.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init-memory.d.ts","sourceRoot":"","sources":["../../../src/init/init-memory.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAMH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oCAAoC,CAAC;AACrE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAEnD,wBAAsB,iBAAiB,CACrC,GAAG,EAAE,MAAM,EACX,OAAO,EAAE;IAAE,YAAY,EAAE,OAAO,CAAA;CAAE,GACjC,OAAO,CAAC,gBAAgB,CAAC,CAoB3B;AAMD;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CACrC,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,SAAS,UAAU,EAAE,GAC3B,OAAO,CAAC,MAAM,CAAC,CAyBjB;AAED,8EAA8E;AAC9E,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,gBAAgB,GAAG,SAAS,GAAG,IAAI,CAQ9E"}

package/dist/src/init/init-memory.js

@@ -7,7 +7,7 @@
  */
 import * as fs from 'node:fs';
 import * as path from 'node:path';
-import { initializeMemoryDatabase } from '../memory/memory-initializer.js';
+import { initializeMemoryDatabase, storeEntry } from '../memory/memory-initializer.js';
 import { output } from '../output.js';
 export async function initProjectMemory(cwd, options) {
     const dbPath = path.join(cwd, '.swarm', 'memory.db');
@@ -31,6 +31,49 @@ export async function initProjectMemory(cwd, options) {
         return { status: 'failed', dbPath, error: e instanceof Error ? e.message : String(e) };
     }
 }
+// Seed keys come from package.json's `name`; keep them to a plain shape.
+const SEED_KEY = /^[a-zA-Z0-9._:/-]{1,128}$/;
+const SEED_NAMESPACE = /^[a-zA-Z0-9_-]{1,64}$/;
+/**
+ * Store the seeds shared_instructions generation detected, in-process, in
+ * `targetDir`'s memory store — the one `monomind memory store` run there
+ * writes to, which the bridge resolves from MONOMIND_CWD (else the cwd), so
+ * it is pinned to `targetDir` for the duration. Best-effort; returns how
+ * many were stored. No embeddings are computed, so init neither loads a
+ * model nor goes online.
+ */
+export async function seedProjectMemory(targetDir, seeds) {
+    const previousCwd = process.env.MONOMIND_CWD;
+    process.env.MONOMIND_CWD = targetDir;
+    let stored = 0;
+    try {
+        for (const { key, value, namespace } of seeds) {
+            if (!SEED_KEY.test(key) || !SEED_NAMESPACE.test(namespace))
+                continue;
+            try {
+                const result = await storeEntry({
+                    key,
+                    value,
+                    namespace,
+                    generateEmbeddingFlag: false,
+                    upsert: true,
+                });
+                if (result.success)
+                    stored++;
+            }
+            catch {
+                // Non-critical — memory seeding is best-effort
+            }
+        }
+    }
+    finally {
+        if (previousCwd === undefined)
+            delete process.env.MONOMIND_CWD;
+        else
+            process.env.MONOMIND_CWD = previousCwd;
+    }
+    return stored;
+}
 /** Print the outcome; a failure is a warning with the fix, never an error. */
 export function reportProjectMemory(memory) {
     if (memory?.status === 'created')

package/dist/src/init/init-memory.js.map

@@ -1 +1 @@
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+{"version":3,"file":"init-memory.js","sourceRoot":"","sources":["../../../src/init/init-memory.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,wBAAwB,EAAE,UAAU,EAAE,MAAM,iCAAiC,CAAC;AACvF,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AAItC,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,GAAW,EACX,OAAkC;IAElC,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,QAAQ,EAAE,WAAW,CAAC,CAAC;IACrD,IAAI,MAAM,GAA+B,UAAU,CAAC;IACpD,IAAI,CAAC;QACH,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;YAC3B,MAAM,MAAM,GAAG,MAAM,wBAAwB,CAAC,EAAE,MAAM,EAAE,CAAC,CAAC;YAC1D,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;gBACpB,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,CAAC,KAAK,IAAI,gBAAgB,EAAE,CAAC;YAC/E,CAAC;YACD,MAAM,GAAG,SAAS,CAAC;QACrB,CAAC;QACD,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,WAAW,CAAC,CAAC;QAC5D,IAAI,OAAO,CAAC,YAAY,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;YACzD,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;YAC9D,EAAE,CAAC,YAAY,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC;QACxC,CAAC;QACD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC;IAC5B,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;IACzF,CAAC;AACH,CAAC;AAED,yEAAyE;AACzE,MAAM,QAAQ,GAAG,2BAA2B,CAAC;AAC7C,MAAM,cAAc,GAAG,uBAAuB,CAAC;AAE/C;;;;;;;GAOG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,SAAiB,EACjB,KAA4B;IAE5B,MAAM,WAAW,GAAG,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;IAC7C,OAAO,CAAC,GAAG,CAAC,YAAY,GAAG,SAAS,CAAC;IACrC,IAAI,MAAM,GAAG,CAAC,CAAC;IACf,IAAI,CAAC;QACH,KAAK,MAAM,EAAE,GAAG,EAAE,KAAK,EAAE,SAAS,EAAE,IAAI,KAAK,EAAE,CAAC;YAC9C,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,SAAS,CAAC;gBAAE,SAAS;YACrE,IAAI,CAAC;gBACH,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC;oBAC9B,GAAG;oBACH,KAAK;oBACL,SAAS;oBACT,qBAAqB,EAAE,KAAK;oBAC5B,MAAM,EAAE,IAAI;iBACb,CAAC,CAAC;gBACH,IAAI,MAAM,CAAC,OAAO;oBAAE,MAAM,EAAE,CAAC;YAC/B,CAAC;YAAC,MAAM,CAAC;gBACP,+CAA+C;YACjD,CAAC;QACH,CAAC;IACH,CAAC;YAAS,CAAC;QACT,IAAI,WAAW,KAAK,SAAS;YAAE,OAAO,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;;YAC1D,OAAO,CAAC,GAAG,CAAC,YAAY,GAAG,WAAW,CAAC;IAC9C,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,8EAA8E;AAC9E,MAAM,UAAU,mBAAmB,CAAC,MAAoC;IACtE,IAAI,MAAM,EAAE,MAAM,KAAK,SAAS;QAAE,MAAM,CAAC,SAAS,CAAC,+BAA+B,CAAC,CAAC;IACpF,IAAI,MAAM,EAAE,MAAM,KAAK,UAAU;QAAE,MAAM,CAAC,SAAS,CAAC,0CAA0C,CAAC,CAAC;IAChG,IAAI,MAAM,EAAE,MAAM,KAAK,QAAQ,EAAE,CAAC;QAChC,MAAM,CAAC,YAAY,CACjB,oCAAoC,MAAM,CAAC,KAAK,yCAAyC,CAC1F,CAAC;IACJ,CAAC;AACH,CAAC"}

package/dist/src/init/managed-block.d.ts

@@ -22,7 +22,7 @@
  * Every path is idempotent: a second run matches case 2 and rewrites byte-for-
  * byte identical content. Content outside the block is never touched.
  *
- * The delimiter text is deliberately NOT the `# monomind:start <name>`
+ * The delimiter text is deliberately NOT the `monomind:start <name>`
  * convention platform-adapters/merge.ts uses for its own instruction blocks:
  * that text is also matched, none too precisely, by the legacy bare-block
  * migration regexes in platform-adapters/migration.ts, which would treat a
@@ -40,5 +40,7 @@ export declare function dropLegacyUnmarked(text: string, generated: string): str
  * platform-adapters/merge.ts for the skill writer (GH #286).
  */
 export declare function replaceLegacyUnmarked(text: string, generated: string, block: string): string | null;
+/** The body of the current-form `marker` block in `text`, or null if absent. */
+export declare function readGeneratedBlock(text: string, marker: string): string | null;
 export declare function mergeGeneratedBlock(existing: string, marker: string, generated: string): string;
 //# sourceMappingURL=managed-block.d.ts.map

package/dist/src/init/managed-block.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"managed-block.d.ts","sourceRoot":"","sources":["../../../src/init/managed-block.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AA+HH;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CAU1E;AAED;;;;;;GAMG;AACH,wBAAgB,qBAAqB,CACnC,IAAI,EAAE,MAAM,EACZ,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,MAAM,GACZ,MAAM,GAAG,IAAI,CAQf;AAED,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CA0B/F"}
+{"version":3,"file":"managed-block.d.ts","sourceRoot":"","sources":["../../../src/init/managed-block.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AA+HH;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CAU1E;AAED;;;;;;GAMG;AACH,wBAAgB,qBAAqB,CACnC,IAAI,EAAE,MAAM,EACZ,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,MAAM,GACZ,MAAM,GAAG,IAAI,CAQf;AAED,gFAAgF;AAChF,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAI9E;AAED,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CA0B/F"}

package/dist/src/init/managed-block.js

@@ -35,7 +35,7 @@ function currentBlockPattern(marker) {
 function legacyMarkerPattern(marker) {
     const escaped = escapeForBlockMarker(marker);
     const commentPrefix = '(?:(?:#|//)\\s*|<!--\\s*)?';
-    const suffix = '\\s*(?:-->)?[^\\S\\r\\n]*(?:\\r?\\n|$)';
+    const suffix = '[^\\S\\r\\n]*(?:-->)?[^\\S\\r\\n]*(?:\\r?\\n|$)';
     return new RegExp(`^[\\t ]*${commentPrefix}monomind:start\\s+${escaped}${suffix}[\\s\\S]*?^[\\t ]*${commentPrefix}monomind:end\\s+${escaped}${suffix}`, 'm');
 }
 /** Opens or closes a fenced code block (``` or ~~~). */
@@ -136,7 +136,7 @@ function findLegacyUnmarkedRange(lines, generated) {
  * Every path is idempotent: a second run matches case 2 and rewrites byte-for-
  * byte identical content. Content outside the block is never touched.
  *
- * The delimiter text is deliberately NOT the `# monomind:start <name>`
+ * The delimiter text is deliberately NOT the `monomind:start <name>`
  * convention platform-adapters/merge.ts uses for its own instruction blocks:
  * that text is also matched, none too precisely, by the legacy bare-block
  * migration regexes in platform-adapters/migration.ts, which would treat a
@@ -175,6 +175,13 @@ export function replaceLegacyUnmarked(text, generated, block) {
     lines.splice(range.start, range.end - range.start, ...blockLines);
     return lines.join('\n');
 }
+/** The body of the current-form `marker` block in `text`, or null if absent. */
+export function readGeneratedBlock(text, marker) {
+    const match = currentBlockPattern(marker).exec(text);
+    if (!match)
+        return null;
+    return match[0].replace(/\n$/, '').split('\n').slice(1, -1).join('\n');
+}
 export function mergeGeneratedBlock(existing, marker, generated) {
     const block = buildBlock(marker, generated);
     if (existing.length === 0)

package/dist/src/init/managed-block.js.map

@@ -1 +1 @@
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package/dist/src/init/mcp-generator.d.ts

@@ -6,6 +6,15 @@
 import { buildMonoesMcpEntry } from '../mcp/monoes-mcp-entry.mjs';
 import type { InitOptions } from './types.js';
 export { buildMonoesMcpEntry };
+/**
+ * `existing` .mcp.json text with `generated`'s servers merged in, or null when
+ * `existing` is not a JSON object. Only monomind's entries change: servers the
+ * generator emits replace their namesakes (the tokenless monoes entry is how a
+ * leaked token is migrated away), except `monomind`, whose command/args are
+ * refreshed while every other field and env value the user set is kept. Other
+ * servers and top-level keys are untouched.
+ */
+export declare function mergeMCPJson(existing: string, generated: string): string | null;
 /**
  * Generate MCP configuration
  */

package/dist/src/init/mcp-generator.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mcp-generator.d.ts","sourceRoot":"","sources":["../../../src/init/mcp-generator.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAUH,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAC;AAElE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAE9C,OAAO,EAAE,mBAAmB,EAAE,CAAC;AAE/B;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAiD9D;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAG5D;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,EAAE,CAOlE;AAED;;GAEG;AACH,wBAAgB,uBAAuB,IAAI;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,CAW5E"}
+{"version":3,"file":"mcp-generator.d.ts","sourceRoot":"","sources":["../../../src/init/mcp-generator.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAUH,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAC;AAElE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAE9C,OAAO,EAAE,mBAAmB,EAAE,CAAC;AAE/B;;;;;;;GAOG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAkB/E;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAiD9D;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAG5D;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,EAAE,CAOlE;AAED;;GAEG;AACH,wBAAgB,uBAAuB,IAAI;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,CAW5E"}

package/dist/src/init/mcp-generator.js

@@ -14,6 +14,34 @@ import path from 'node:path';
 import { buildMonoesMcpEntry } from '../mcp/monoes-mcp-entry.mjs';
 import { mcpAddHint, mcpServerEntry } from '../platform-adapters/renderers/mcp.js';
 export { buildMonoesMcpEntry };
+/**
+ * `existing` .mcp.json text with `generated`'s servers merged in, or null when
+ * `existing` is not a JSON object. Only monomind's entries change: servers the
+ * generator emits replace their namesakes (the tokenless monoes entry is how a
+ * leaked token is migrated away), except `monomind`, whose command/args are
+ * refreshed while every other field and env value the user set is kept. Other
+ * servers and top-level keys are untouched.
+ */
+export function mergeMCPJson(existing, generated) {
+    let parsed;
+    try {
+        parsed = JSON.parse(existing);
+    }
+    catch {
+        return null;
+    }
+    if (!parsed || typeof parsed !== 'object' || Array.isArray(parsed))
+        return null;
+    const servers = { ...(parsed.mcpServers ?? {}) };
+    for (const [name, entry] of Object.entries(JSON.parse(generated).mcpServers)) {
+        const current = servers[name] ?? {};
+        servers[name] =
+            name === 'monomind'
+                ? { ...current, ...entry, env: { ...entry.env, ...current.env } }
+                : entry;
+    }
+    return `${JSON.stringify({ ...parsed, mcpServers: servers }, null, 2)}\n`;
+}
 /**
  * Generate MCP configuration
  */

package/dist/src/init/mcp-generator.js.map

@@ -1 +1 @@
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