@monoes/monomindcli 2.16.2 → 2.16.4

package/dist/src/commands/doctor-env-checks.js.map

@@ -1 +1 @@
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package/dist/src/commands/doctor-fresh-install.d.ts

@@ -0,0 +1,9 @@
+/**
+ * P2-14: Quiet the fresh-install doctor. On a brand-new install, 9+ checks
+ * report warnings that are actually expected states. Detect fresh install
+ * (`.monomind/` dir < 5 min old) and downgrade expected warnings to info
+ * (the caller skips this under --verbose).
+ */
+import type { DoctorResult } from './doctor-json.js';
+export declare function downgradeFreshInstallWarnings(settled: DoctorResult[], cwd: string): void;
+//# sourceMappingURL=doctor-fresh-install.d.ts.map

package/dist/src/commands/doctor-fresh-install.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-fresh-install.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-fresh-install.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAIH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAerD,wBAAgB,6BAA6B,CAAC,OAAO,EAAE,YAAY,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,IAAI,CAmBxF"}

package/dist/src/commands/doctor-fresh-install.js

@@ -0,0 +1,43 @@
+/**
+ * P2-14: Quiet the fresh-install doctor. On a brand-new install, 9+ checks
+ * report warnings that are actually expected states. Detect fresh install
+ * (`.monomind/` dir < 5 min old) and downgrade expected warnings to info
+ * (the caller skips this under --verbose).
+ */
+import { statSync } from 'node:fs';
+import * as path from 'node:path';
+const FRESH_EXPECTED = new Set([
+    'Memory Database',
+    'Memory Knowledge Graph',
+    'Second Brain Model',
+    'Graph freshness',
+    'MCP Servers',
+    'Worker Metrics',
+    'Security Audit',
+    'Helper Files',
+    'AppleDouble Sidecars',
+    'Monoes Memory',
+]);
+export function downgradeFreshInstallWarnings(settled, cwd) {
+    const monomindDir = path.join(cwd, '.monomind');
+    let isFreshInstall = false;
+    try {
+        const stat = statSync(monomindDir);
+        isFreshInstall = Date.now() - stat.birthtimeMs < 5 * 60 * 1000; // < 5 min old
+    }
+    catch {
+        /* dir doesn't exist — not our project */
+    }
+    if (!isFreshInstall)
+        return;
+    for (let i = 0; i < settled.length; i++) {
+        if (settled[i].status === 'warn' && FRESH_EXPECTED.has(settled[i].name)) {
+            settled[i] = {
+                ...settled[i],
+                status: 'info',
+                message: `${settled[i].message} (expected on fresh install — run with --verbose for details)`,
+            };
+        }
+    }
+}
+//# sourceMappingURL=doctor-fresh-install.js.map

package/dist/src/commands/doctor-fresh-install.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-fresh-install.js","sourceRoot":"","sources":["../../../src/commands/doctor-fresh-install.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AACnC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAGlC,MAAM,cAAc,GAAG,IAAI,GAAG,CAAC;IAC7B,iBAAiB;IACjB,wBAAwB;IACxB,oBAAoB;IACpB,iBAAiB;IACjB,aAAa;IACb,gBAAgB;IAChB,gBAAgB;IAChB,cAAc;IACd,sBAAsB;IACtB,eAAe;CAChB,CAAC,CAAC;AAEH,MAAM,UAAU,6BAA6B,CAAC,OAAuB,EAAE,GAAW;IAChF,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,WAAW,CAAC,CAAC;IAChD,IAAI,cAAc,GAAG,KAAK,CAAC;IAC3B,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,QAAQ,CAAC,WAAW,CAAC,CAAC;QACnC,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,WAAW,GAAG,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,CAAC,cAAc;IAChF,CAAC;IAAC,MAAM,CAAC;QACP,yCAAyC;IAC3C,CAAC;IACD,IAAI,CAAC,cAAc;QAAE,OAAO;IAC5B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACxC,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,KAAK,MAAM,IAAI,cAAc,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;YACxE,OAAO,CAAC,CAAC,CAAC,GAAG;gBACX,GAAG,OAAO,CAAC,CAAC,CAAC;gBACb,MAAM,EAAE,MAAe;gBACvB,OAAO,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,OAAO,+DAA+D;aAC9F,CAAC;QACJ,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/src/commands/doctor-hook-monograph-checks.d.ts

@@ -1,8 +1,10 @@
-import type { HealthCheck } from './doctor-env-checks.js';
+import { type HealthCheck } from './doctor-env-checks.js';
 export interface ResolveOptions {
     globalRoot?: string | null;
     npxCacheDir?: string;
     pathEnv?: string;
+    /** Read the graph's commit without touching its -shm/-wal files (doctor --read-only). */
+    readOnly?: boolean;
 }
 export declare function checkHookMonograph(cwd?: string, opts?: ResolveOptions): Promise<HealthCheck>;
 //# sourceMappingURL=doctor-hook-monograph-checks.d.ts.map

package/dist/src/commands/doctor-hook-monograph-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor-hook-monograph-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-hook-monograph-checks.ts"],"names":[],"mappings":"AAeA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAM1D,MAAM,WAAW,cAAc;IAC7B,UAAU,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAiCD,wBAAsB,kBAAkB,CACtC,GAAG,GAAE,MAAsB,EAC3B,IAAI,CAAC,EAAE,cAAc,GACpB,OAAO,CAAC,WAAW,CAAC,CA4CtB"}
+{"version":3,"file":"doctor-hook-monograph-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-hook-monograph-checks.ts"],"names":[],"mappings":"AAeA,OAAO,EAAE,KAAK,WAAW,EAAqC,MAAM,wBAAwB,CAAC;AAM7F,MAAM,WAAW,cAAc;IAC7B,UAAU,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,yFAAyF;IACzF,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAoCD,wBAAsB,kBAAkB,CACtC,GAAG,GAAE,MAAsB,EAC3B,IAAI,CAAC,EAAE,cAAc,GACpB,OAAO,CAAC,WAAW,CAAC,CAmDtB"}

package/dist/src/commands/doctor-hook-monograph-checks.js

@@ -13,16 +13,20 @@ import { existsSync } from 'node:fs';
 import { createRequire } from 'node:module';
 import { dirname, join } from 'node:path';
 import { fileURLToPath } from 'node:url';
+import { runCommand, withThrowawayNpmCache } from './doctor-env-checks.js';
 const NAME = 'Hook graph rebuild';
 const REL = join('.claude', 'helpers', 'utils', 'monograph-resolve.cjs');
 const HERE = dirname(fileURLToPath(import.meta.url));
-function loadResolver(cwd) {
-    const candidates = [
-        join(cwd, REL),
+function loadResolver(cwd, readOnly) {
+    const bundled = [
         // src/commands → ../.. is the package root; dist/src/commands → ../../..
         join(HERE, '..', '..', REL),
         join(HERE, '..', '..', '..', REL),
     ];
+    // Read-only prefers this build's copy: a project's older copy opens the
+    // graph db in a way that updates SQLite's -shm file (a stale copy is what
+    // the `helpers` check reports).
+    const candidates = readOnly ? [...bundled, join(cwd, REL)] : [join(cwd, REL), ...bundled];
     const file = candidates.find((p) => existsSync(p));
     try {
         return file ? createRequire(import.meta.url)(file) : null;
@@ -32,7 +36,7 @@ function loadResolver(cwd) {
     }
 }
 export async function checkHookMonograph(cwd = process.cwd(), opts) {
-    const mod = loadResolver(cwd);
+    const mod = loadResolver(cwd, opts?.readOnly);
     if (!mod) {
         return {
             name: NAME,
@@ -41,6 +45,11 @@ export async function checkHookMonograph(cwd = process.cwd(), opts) {
             fix: 'npx monomind init upgrade',
         };
     }
+    // The resolver's own `npm root -g` would write npm's log under ~/.npm.
+    if (opts?.readOnly && opts.globalRoot === undefined) {
+        const root = await withThrowawayNpmCache((env) => runCommand('npm root -g', 5000, env)).catch(() => null);
+        opts = { ...opts, globalRoot: root || null };
+    }
     const d = mod.diagnose(cwd, opts);
     const limit = mod.STALE_LIMIT;
     const pastLimit = d.dbExists && d.behind !== null && d.behind > limit;

package/dist/src/commands/doctor-hook-monograph-checks.js.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor-hook-monograph-checks.js","sourceRoot":"","sources":["../../../src/commands/doctor-hook-monograph-checks.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AACH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAoB,UAAU,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAE7F,MAAM,IAAI,GAAG,oBAAoB,CAAC;AAClC,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,EAAE,SAAS,EAAE,OAAO,EAAE,uBAAuB,CAAC,CAAC;AACzE,MAAM,IAAI,GAAG,OAAO,CAAC,aAAa,CAAC,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AA0BrD,SAAS,YAAY,CAAC,GAAW,EAAE,QAAkB;IACnD,MAAM,OAAO,GAAG;QACd,yEAAyE;QACzE,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC;QAC3B,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC;KAClC,CAAC;IACF,wEAAwE;IACxE,0EAA0E;IAC1E,gCAAgC;IAChC,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,GAAG,OAAO,CAAC,CAAC;IAC1F,MAAM,IAAI,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC;IACnD,IAAI,CAAC;QACH,OAAO,IAAI,CAAC,CAAC,CAAE,aAAa,CAAC,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAmB,CAAC,CAAC,CAAC,IAAI,CAAC;IAC/E,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,GAAG,GAAW,OAAO,CAAC,GAAG,EAAE,EAC3B,IAAqB;IAErB,MAAM,GAAG,GAAG,YAAY,CAAC,GAAG,EAAE,IAAI,EAAE,QAAQ,CAAC,CAAC;IAC9C,IAAI,CAAC,GAAG,EAAE,CAAC;QACT,OAAO;YACL,IAAI,EAAE,IAAI;YACV,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,+EAA+E;YACxF,GAAG,EAAE,2BAA2B;SACjC,CAAC;IACJ,CAAC;IACD,uEAAuE;IACvE,IAAI,IAAI,EAAE,QAAQ,IAAI,IAAI,CAAC,UAAU,KAAK,SAAS,EAAE,CAAC;QACpD,MAAM,IAAI,GAAG,MAAM,qBAAqB,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,UAAU,CAAC,aAAa,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC,KAAK,CAC3F,GAAG,EAAE,CAAC,IAAI,CACX,CAAC;QACF,IAAI,GAAG,EAAE,GAAG,IAAI,EAAE,UAAU,EAAE,IAAI,IAAI,IAAI,EAAE,CAAC;IAC/C,CAAC;IACD,MAAM,CAAC,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;IAClC,MAAM,KAAK,GAAG,GAAG,CAAC,WAAW,CAAC;IAC9B,MAAM,SAAS,GAAG,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,MAAM,KAAK,IAAI,IAAI,CAAC,CAAC,MAAM,GAAG,KAAK,CAAC;IACtE,IAAI,CAAC,CAAC,CAAC,UAAU,EAAE,CAAC;QAClB,OAAO;YACL,IAAI,EAAE,IAAI;YACV,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM;YACnC,OAAO,EAAE,SAAS;gBAChB,CAAC,CAAC,SAAS,CAAC,CAAC,MAAM,wDAAwD,CAAC,CAAC,OAAO,EAAE;gBACtF,CAAC,CAAC,sCAAsC,CAAC,CAAC,OAAO,EAAE;YACrD,GAAG,EAAE,CAAC,CAAC,GAAG,IAAI,SAAS;SACxB,CAAC;IACJ,CAAC;IACD,IAAI,SAAS,EAAE,CAAC;QACd,OAAO;YACL,IAAI,EAAE,IAAI;YACV,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,SAAS,CAAC,CAAC,MAAM,+BAA+B,KAAK,+DAA+D;YAC7H,GAAG,EAAE,8BAA8B;SACpC,CAAC;IACJ,CAAC;IACD,IAAI,CAAC,CAAC,UAAU,IAAI,CAAC,CAAC,UAAU,CAAC,EAAE,KAAK,KAAK,EAAE,CAAC;QAC9C,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,UAAU,CAAC,OAAO,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,UAAU,CAAC,OAAO,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;QACnF,OAAO;YACL,IAAI,EAAE,IAAI;YACV,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,2BAA2B,KAAK,KAAK,CAAC,CAAC,UAAU,CAAC,OAAO,EAAE;YACpE,GAAG,EAAE,CAAC,CAAC,UAAU,CAAC,GAAG,IAAI,+BAA+B;SACzD,CAAC;IACJ,CAAC;IACD,MAAM,GAAG,GAAG,CAAC,CAAC,QAAQ;QACpB,CAAC,CAAC,sBAAsB,CAAC,CAAC,QAAQ,CAAC,OAAO,KAAK,CAAC,CAAC,QAAQ,CAAC,MAAM,GAAG;QACnE,CAAC,CAAC,6BAA6B,CAAC,CAAC,MAAM,GAAG,CAAC;IAC7C,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,gCAAgC,GAAG,EAAE,EAAE,CAAC;AACxF,CAAC"}

package/dist/src/commands/doctor-hook-settings-checks.d.ts

@@ -0,0 +1,5 @@
+import type { HealthCheck } from './doctor-env-checks.js';
+/** The hooks agent picking needs, as `Event: <script> <subcommand>`. */
+export declare const PICK_HOOKS: string[];
+export declare function checkHookSettings(cwd?: string): Promise<HealthCheck>;
+//# sourceMappingURL=doctor-hook-settings-checks.d.ts.map

package/dist/src/commands/doctor-hook-settings-checks.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-hook-settings-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-hook-settings-checks.ts"],"names":[],"mappings":"AAcA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAM1D,wEAAwE;AACxE,eAAO,MAAM,UAAU,UAKtB,CAAC;AAEF,wBAAsB,iBAAiB,CAAC,GAAG,GAAE,MAAsB,GAAG,OAAO,CAAC,WAAW,CAAC,CAyBzF"}

package/dist/src/commands/doctor-hook-settings-checks.js

@@ -0,0 +1,50 @@
+/**
+ * Doctor — are the monomind hooks in .claude/settings.json current?
+ *
+ * `init upgrade` used to merge only the auto-memory hooks, so an upgraded
+ * install could lack the hooks agent picking depends on (the prompt route
+ * hook, the Task|Agent pre-agent adherence hook, the SubagentStart/Stop
+ * capture hooks) and keep timeouts written in milliseconds, which Claude
+ * Code reads as seconds. Both are fixed by `monomind init upgrade --settings`.
+ */
+import { existsSync, readFileSync, statSync } from 'node:fs';
+import { join } from 'node:path';
+import { missingMonomindHooks, msTimeoutHooks } from '../init/hook-settings.js';
+import { generateSettings } from '../init/settings-generator.js';
+import { DEFAULT_INIT_OPTIONS } from '../init/types.js';
+const NAME = 'Hook Settings';
+const FIX = 'monomind init upgrade --settings';
+const MAX_SETTINGS_BYTES = 1024 * 1024;
+/** The hooks agent picking needs, as `Event: <script> <subcommand>`. */
+export const PICK_HOOKS = [
+    'UserPromptSubmit: hook-handler.cjs route',
+    'PreToolUse: hook-handler.cjs pre-agent',
+    'SubagentStart: handlers/capture-handler.cjs subagent-start',
+    'SubagentStop: handlers/capture-handler.cjs subagent-stop',
+];
+export async function checkHookSettings(cwd = process.cwd()) {
+    const settingsPath = join(cwd, '.claude', 'settings.json');
+    if (!existsSync(settingsPath))
+        return { name: NAME, status: 'warn', message: '.claude/settings.json not found', fix: FIX };
+    let hooks;
+    try {
+        if (statSync(settingsPath).size > MAX_SETTINGS_BYTES)
+            return { name: NAME, status: 'warn', message: 'settings.json too large to parse' };
+        hooks = JSON.parse(readFileSync(settingsPath, 'utf-8'))?.hooks ?? {};
+    }
+    catch {
+        return { name: NAME, status: 'warn', message: 'Could not parse .claude/settings.json' };
+    }
+    const reference = generateSettings(DEFAULT_INIT_OPTIONS).hooks;
+    const missing = missingMonomindHooks(hooks, reference).filter((h) => PICK_HOOKS.includes(h));
+    const msTimeouts = msTimeoutHooks(hooks);
+    const problems = [];
+    if (missing.length)
+        problems.push(`missing pick hook(s): ${missing.join(', ')}`);
+    if (msTimeouts.length)
+        problems.push(`${msTimeouts.length} monomind hook timeout(s) in milliseconds (Claude Code reads seconds), e.g. ${msTimeouts[0]}`);
+    return problems.length
+        ? { name: NAME, status: 'warn', message: problems.join('; '), fix: FIX }
+        : { name: NAME, status: 'pass', message: 'pick hooks present, timeouts in seconds' };
+}
+//# sourceMappingURL=doctor-hook-settings-checks.js.map

package/dist/src/commands/doctor-hook-settings-checks.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-hook-settings-checks.js","sourceRoot":"","sources":["../../../src/commands/doctor-hook-settings-checks.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AACH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AAC7D,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAqB,oBAAoB,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AACnG,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,kBAAkB,CAAC;AAGxD,MAAM,IAAI,GAAG,eAAe,CAAC;AAC7B,MAAM,GAAG,GAAG,kCAAkC,CAAC;AAC/C,MAAM,kBAAkB,GAAG,IAAI,GAAG,IAAI,CAAC;AAEvC,wEAAwE;AACxE,MAAM,CAAC,MAAM,UAAU,GAAG;IACxB,0CAA0C;IAC1C,wCAAwC;IACxC,4DAA4D;IAC5D,0DAA0D;CAC3D,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,iBAAiB,CAAC,GAAG,GAAW,OAAO,CAAC,GAAG,EAAE;IACjE,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,eAAe,CAAC,CAAC;IAC3D,IAAI,CAAC,UAAU,CAAC,YAAY,CAAC;QAC3B,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,iCAAiC,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC;IAC9F,IAAI,KAAmB,CAAC;IACxB,IAAI,CAAC;QACH,IAAI,QAAQ,CAAC,YAAY,CAAC,CAAC,IAAI,GAAG,kBAAkB;YAClD,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,kCAAkC,EAAE,CAAC;QACrF,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC,EAAE,KAAK,IAAI,EAAE,CAAC;IACvE,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,uCAAuC,EAAE,CAAC;IAC1F,CAAC;IAED,MAAM,SAAS,GAAI,gBAAgB,CAAC,oBAAoB,CAA6B,CAAC,KAAK,CAAC;IAC5F,MAAM,OAAO,GAAG,oBAAoB,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7F,MAAM,UAAU,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC;IACzC,MAAM,QAAQ,GAAa,EAAE,CAAC;IAC9B,IAAI,OAAO,CAAC,MAAM;QAAE,QAAQ,CAAC,IAAI,CAAC,yBAAyB,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjF,IAAI,UAAU,CAAC,MAAM;QACnB,QAAQ,CAAC,IAAI,CACX,GAAG,UAAU,CAAC,MAAM,+EAA+E,UAAU,CAAC,CAAC,CAAC,EAAE,CACnH,CAAC;IACJ,OAAO,QAAQ,CAAC,MAAM;QACpB,CAAC,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE;QACxE,CAAC,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,yCAAyC,EAAE,CAAC;AACzF,CAAC"}

package/dist/src/commands/doctor-json.d.ts

@@ -0,0 +1,41 @@
+/**
+ * `monomind doctor --json` payload (v1), advertised as capability
+ * `doctor-json` — doc/agent-exec-protocol.md §10.
+ */
+import type { CommandContext, CommandResult } from '../types.js';
+import type { HealthCheck } from './doctor-env-checks.js';
+/** A check result tagged with the component (`-c` name) that produced it. */
+export type DoctorResult = HealthCheck & {
+    component?: string;
+};
+/** The `doctor --json` payload (v1). Advertised as capability `doctor-json`. */
+export declare function doctorJsonPayload(ctx: CommandContext, result: CommandResult): {
+    v: number;
+    cwd: string;
+    read_only: boolean;
+    offline: boolean;
+    success: boolean;
+    error: string | null;
+    summary: {
+        passed: number;
+        warnings: number;
+        failed: number;
+        info: number;
+        skipped: number;
+    };
+    results: {
+        component: string | null;
+        name: string;
+        status: "fail" | "info" | "pass" | "skipped" | "warn";
+        message: string;
+        fix: string | null;
+        fix_safety: "auto" | "confirm" | "manual" | null;
+        fix_flag: "--fix" | "--install" | null;
+        skipped_reason: "offline" | "read-only" | null;
+    }[];
+    fixes: {
+        component: string;
+        outcome: string;
+    }[];
+};
+//# sourceMappingURL=doctor-json.d.ts.map

package/dist/src/commands/doctor-json.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-json.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-json.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AACjE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAG1D,6EAA6E;AAC7E,MAAM,MAAM,YAAY,GAAG,WAAW,GAAG;IAAE,SAAS,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC;AAoBhE,gFAAgF;AAChF,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,cAAc,EAAE,MAAM,EAAE,aAAa;;;;;;;;QA8BtE,MAAM;QACN,QAAQ;QACR,MAAM;QACN,IAAI;QACJ,OAAO;;;;;;;;;;;;;mBA/BY,MAAM;iBAAW,MAAM;;EAoC/C"}

package/dist/src/commands/doctor-json.js

@@ -0,0 +1,60 @@
+/**
+ * `monomind doctor --json` payload (v1), advertised as capability
+ * `doctor-json` — doc/agent-exec-protocol.md §10.
+ */
+import { resolveDoctorMode } from './doctor-mode.js';
+/**
+ * How each component's fix is applied. Components not listed only carry a
+ * hint (`fix` text) for a person to follow. A result's own `fixSafety`
+ * overrides its component's safety (e.g. a helpers warning `--fix` can't
+ * apply is `manual`).
+ *  - auto: local, repeatable, applied by `--fix`
+ *  - confirm: installs software or runs network/sudo commands; the caller
+ *    asks a person first, then passes `flag`
+ */
+const FIX_APPLY = {
+    helpers: { safety: 'auto', flag: '--fix' },
+    gitignore: { safety: 'auto', flag: '--fix' },
+    appledouble: { safety: 'auto', flag: '--fix' },
+    sidecars: { safety: 'auto', flag: '--fix' },
+    'monoes-tools': { safety: 'confirm', flag: '--fix' },
+    claude: { safety: 'confirm', flag: '--install' },
+};
+/** The `doctor --json` payload (v1). Advertised as capability `doctor-json`. */
+export function doctorJsonPayload(ctx, result) {
+    const data = (result.data ?? {});
+    const results = (data.results ?? []).map((r) => {
+        const apply = r.component ? FIX_APPLY[r.component] : undefined;
+        const safety = r.fixSafety ?? apply?.safety ?? 'manual';
+        return {
+            component: r.component ?? null,
+            name: r.name,
+            status: r.status,
+            message: r.message,
+            fix: r.fix ?? null,
+            fix_safety: r.fix ? safety : null,
+            fix_flag: r.fix && safety !== 'manual' ? (apply?.flag ?? null) : null,
+            skipped_reason: r.skippedReason ?? null,
+        };
+    });
+    const count = (st) => results.filter((r) => r.status === st).length;
+    const mode = resolveDoctorMode(ctx.flags);
+    return {
+        v: 1,
+        cwd: ctx.cwd || process.cwd(),
+        read_only: mode.readOnly,
+        offline: mode.offline,
+        success: result.success,
+        error: data.error ?? null,
+        summary: {
+            passed: count('pass'),
+            warnings: count('warn'),
+            failed: count('fail'),
+            info: count('info'),
+            skipped: count('skipped'),
+        },
+        results,
+        fixes: data.fixes ?? [],
+    };
+}
+//# sourceMappingURL=doctor-json.js.map

package/dist/src/commands/doctor-json.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-json.js","sourceRoot":"","sources":["../../../src/commands/doctor-json.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAIH,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAKrD;;;;;;;;GAQG;AACH,MAAM,SAAS,GAAgF;IAC7F,OAAO,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE;IAC1C,SAAS,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE;IAC5C,WAAW,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE;IAC9C,QAAQ,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE;IAC3C,cAAc,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,EAAE,OAAO,EAAE;IACpD,MAAM,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,EAAE,WAAW,EAAE;CACjD,CAAC;AAEF,gFAAgF;AAChF,MAAM,UAAU,iBAAiB,CAAC,GAAmB,EAAE,MAAqB;IAC1E,MAAM,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,IAAI,EAAE,CAI9B,CAAC;IACF,MAAM,OAAO,GAAG,CAAC,IAAI,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;QAC7C,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;QAC/D,MAAM,MAAM,GAAG,CAAC,CAAC,SAAS,IAAI,KAAK,EAAE,MAAM,IAAI,QAAQ,CAAC;QACxD,OAAO;YACL,SAAS,EAAE,CAAC,CAAC,SAAS,IAAI,IAAI;YAC9B,IAAI,EAAE,CAAC,CAAC,IAAI;YACZ,MAAM,EAAE,CAAC,CAAC,MAAM;YAChB,OAAO,EAAE,CAAC,CAAC,OAAO;YAClB,GAAG,EAAE,CAAC,CAAC,GAAG,IAAI,IAAI;YAClB,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI;YACjC,QAAQ,EAAE,CAAC,CAAC,GAAG,IAAI,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI;YACrE,cAAc,EAAE,CAAC,CAAC,aAAa,IAAI,IAAI;SACxC,CAAC;IACJ,CAAC,CAAC,CAAC;IACH,MAAM,KAAK,GAAG,CAAC,EAAU,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;IAC5E,MAAM,IAAI,GAAG,iBAAiB,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;IAC1C,OAAO;QACL,CAAC,EAAE,CAAC;QACJ,GAAG,EAAE,GAAG,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE;QAC7B,SAAS,EAAE,IAAI,CAAC,QAAQ;QACxB,OAAO,EAAE,IAAI,CAAC,OAAO;QACrB,OAAO,EAAE,MAAM,CAAC,OAAO;QACvB,KAAK,EAAE,IAAI,CAAC,KAAK,IAAI,IAAI;QACzB,OAAO,EAAE;YACP,MAAM,EAAE,KAAK,CAAC,MAAM,CAAC;YACrB,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC;YACvB,MAAM,EAAE,KAAK,CAAC,MAAM,CAAC;YACrB,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC;YACnB,OAAO,EAAE,KAAK,CAAC,SAAS,CAAC;SAC1B;QACD,OAAO;QACP,KAAK,EAAE,IAAI,CAAC,KAAK,IAAI,EAAE;KACxB,CAAC;AACJ,CAAC"}

package/dist/src/commands/doctor-mode.d.ts

@@ -0,0 +1,28 @@
+/**
+ * `doctor --read-only` and `doctor --offline` (issue #335): a health check a
+ * caller can run without it changing anything or touching the network.
+ * doc/agent-exec-protocol.md §10.
+ *
+ * Read-only is the default under `--json` (mono-agent's checks never change
+ * anything) unless `--fix`/`--install` asks for writes. It is about files, not
+ * the network: the version check still asks the npm registry, through a
+ * throwaway npm cache. `--offline` skips every check that needs the network.
+ */
+import type { CommandOption, CommandResult } from '../types.js';
+import type { HealthCheck } from './doctor-env-checks.js';
+export interface DoctorMode {
+    readOnly: boolean;
+    offline: boolean;
+}
+export type SkipReason = 'read-only' | 'offline';
+export declare const DOCTOR_MODE_OPTIONS: CommandOption[];
+export declare function resolveDoctorMode(flags: Record<string, unknown>): DoctorMode & {
+    error?: string;
+};
+/** `Mode: read-only, offline` for the human header, or '' for a plain run. */
+export declare function modeLabel(mode: DoctorMode): string;
+/** A run refused before any check (e.g. `--read-only --fix`). */
+export declare function doctorError(error: string): CommandResult;
+/** The result for a check this mode skips, or null when it runs. */
+export declare function skippedCheck(component: string, mode: DoctorMode, single: boolean): HealthCheck | null;
+//# sourceMappingURL=doctor-mode.d.ts.map

package/dist/src/commands/doctor-mode.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-mode.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-mode.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAGH,OAAO,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAChE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAE1D,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,OAAO,CAAC;IAClB,OAAO,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,MAAM,UAAU,GAAG,WAAW,GAAG,SAAS,CAAC;AAEjD,eAAO,MAAM,mBAAmB,EAAE,aAAa,EAa9C,CAAC;AAEF,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,UAAU,GAAG;IAAE,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAgBjG;AAED,8EAA8E;AAC9E,wBAAgB,SAAS,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,CAGlD;AAED,iEAAiE;AACjE,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,GAAG,aAAa,CAOxD;AAyCD,oEAAoE;AACpE,wBAAgB,YAAY,CAC1B,SAAS,EAAE,MAAM,EACjB,IAAI,EAAE,UAAU,EAChB,MAAM,EAAE,OAAO,GACd,WAAW,GAAG,IAAI,CAWpB"}

package/dist/src/commands/doctor-mode.js

@@ -0,0 +1,109 @@
+/**
+ * `doctor --read-only` and `doctor --offline` (issue #335): a health check a
+ * caller can run without it changing anything or touching the network.
+ * doc/agent-exec-protocol.md §10.
+ *
+ * Read-only is the default under `--json` (mono-agent's checks never change
+ * anything) unless `--fix`/`--install` asks for writes. It is about files, not
+ * the network: the version check still asks the npm registry, through a
+ * throwaway npm cache. `--offline` skips every check that needs the network.
+ */
+import { output } from '../output.js';
+export const DOCTOR_MODE_OPTIONS = [
+    {
+        name: 'read-only',
+        description: 'Change no file: no fixes, no registry refresh, no update check (default with --json unless --fix/--install)',
+        type: 'boolean',
+    },
+    {
+        name: 'offline',
+        description: 'Skip the checks that use the network; they are reported as skipped',
+        type: 'boolean',
+        default: false,
+    },
+];
+export function resolveDoctorMode(flags) {
+    const json = Boolean(flags.json) || flags.format === 'json';
+    const writes = Boolean(flags.fix) || Boolean(flags.install);
+    const explicit = flags.readOnly ?? flags['read-only'];
+    const mode = {
+        readOnly: typeof explicit === 'boolean' ? explicit : json && !writes,
+        offline: Boolean(flags.offline),
+    };
+    if (explicit === true && writes)
+        return { ...mode, error: '--read-only cannot be combined with --fix or --install' };
+    if (mode.offline && flags.install)
+        return {
+            ...mode,
+            error: '--offline cannot be combined with --install (it downloads software)',
+        };
+    return mode;
+}
+/** `Mode: read-only, offline` for the human header, or '' for a plain run. */
+export function modeLabel(mode) {
+    const on = [mode.readOnly && 'read-only', mode.offline && 'offline'].filter(Boolean);
+    return on.length ? `Mode: ${on.join(', ')}` : '';
+}
+/** A run refused before any check (e.g. `--read-only --fix`). */
+export function doctorError(error) {
+    output.writeln(output.error(error));
+    return {
+        success: false,
+        exitCode: 1,
+        data: { passed: 0, warnings: 0, failed: 1, results: [], error },
+    };
+}
+/**
+ * Checks a mode skips, with the name their result would carry. `probe`
+ * entries only apply to `-c <component>`: the full run already uses their
+ * config-only variant, which needs neither the network nor any writes.
+ */
+const SKIPS = {
+    version: { name: 'Version Freshness', when: ['offline'], why: 'asks the npm registry' },
+    freshness: { name: 'Version Freshness', when: ['offline'], why: 'asks the npm registry' },
+    'monoes-tools': { name: 'monoes Tools', when: ['offline'], why: 'queries GitHub releases' },
+    jev: {
+        name: 'Decision Model (Jev)',
+        when: ['offline'],
+        why: 'probes the decision-model providers over HTTP',
+        probe: true,
+    },
+    decision: {
+        name: 'Decision Model (Jev)',
+        when: ['offline'],
+        why: 'probes the decision-model providers over HTTP',
+        probe: true,
+    },
+    mcp: {
+        name: 'MCP Servers',
+        when: ['offline', 'read-only'],
+        why: 'starts the configured MCP server, which may download it and runs its own startup',
+        probe: true,
+    },
+    kg: {
+        name: 'Memory Knowledge Graph',
+        when: ['read-only'],
+        why: 'counting it opens the memory database, which writes to it',
+    },
+    pick: {
+        name: 'Agent/Skill Picking',
+        when: ['read-only'],
+        why: 'rebuilds stale agent and skill indexes',
+    },
+};
+/** The result for a check this mode skips, or null when it runs. */
+export function skippedCheck(component, mode, single) {
+    const s = SKIPS[component];
+    if (!s || (s.probe && !single))
+        return null;
+    const reason = s.when.find((r) => (r === 'offline' ? mode.offline : mode.readOnly));
+    if (!reason)
+        return null;
+    return {
+        name: s.name,
+        status: 'skipped',
+        skippedReason: reason,
+        message: `Skipped (${reason === 'offline' ? '--offline' : 'read-only'}): ${s.why}`,
+    };
+}
+//# sourceMappingURL=doctor-mode.js.map

package/dist/src/commands/doctor-mode.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/doctor-monoes-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor-monoes-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-monoes-checks.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAqC1D,eAAO,MAAM,6BAA6B,mIACmF,CAAC;AA6I9H,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,WAAW,CAAC,CAuB7D;AAED;;;;;;;;;;GAUG;AACH,wBAAsB,wBAAwB,IAAI,OAAO,CAAC,WAAW,CAAC,CA6IrE;AAED,wBAAsB,cAAc,IAAI,OAAO,CAAC,OAAO,CAAC,CA8BvD"}
+{"version":3,"file":"doctor-monoes-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-monoes-checks.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAqC1D,eAAO,MAAM,6BAA6B,mIACmF,CAAC;AA6I9H,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,WAAW,CAAC,CAuB7D;AAED;;;;;;;;;;GAUG;AACH,wBAAsB,wBAAwB,IAAI,OAAO,CAAC,WAAW,CAAC,CA6IrE;AAED,wBAAsB,cAAc,IAAI,OAAO,CAAC,OAAO,CAAC,CAgCvD"}

package/dist/src/commands/doctor-monoes-checks.js

@@ -356,9 +356,11 @@ export async function fixMonoesTools() {
             // 2min timeout: generous enough for an interactive sudo password prompt
             // (mono-agent's fix uses sudo mv), but still bounded — avoids hanging the
             // whole `doctor --install` run on a stalled brew/curl network call.
+            // stdin stays inherited for that prompt; output goes to stderr, since
+            // under `doctor --json` stdout is the JSON.
             execSync(issue.fixCommand, {
                 encoding: 'utf8',
-                stdio: 'inherit',
+                stdio: ['inherit', process.stderr, process.stderr],
                 shell: '/bin/bash',
                 timeout: 120_000,
             });

package/dist/src/commands/doctor-monoes-checks.js.map

@@ -1 +1 @@
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package/dist/src/commands/doctor-pick-checks.d.ts

@@ -0,0 +1,19 @@
+import type { HealthCheck } from './doctor-env-checks.js';
+export interface PickAdherence {
+    /** Picks the prompt hook recorded (route-outcomes.jsonl). */
+    routes: number;
+    /** Of those, how many were shown as a [PICK] line. */
+    shown: number;
+    /** Task/Agent spawns made while a pick was on record (pick-adherence.jsonl). */
+    spawns: number;
+    /** Of those, how many used the picked agent. */
+    followed: number;
+}
+/**
+ * Route and adherence counts straight from the hook logs, so doctor reports
+ * them even where the pick-stats helper is not installed. Outcome rates come
+ * from readPickStats.
+ */
+export declare function readPickAdherence(root: string): PickAdherence;
+export declare function checkPick(cwd?: string, env?: NodeJS.ProcessEnv): Promise<HealthCheck>;
+//# sourceMappingURL=doctor-pick-checks.d.ts.map

package/dist/src/commands/doctor-pick-checks.d.ts.map

@@ -0,0 +1 @@
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