@monoes/monomindcli 2.16.2 → 2.16.3

package/dist/src/commands/doctor-env-checks.d.ts

@@ -10,18 +10,33 @@ export declare const MAX_DOCTOR_HELPER_BYTES: number;
 export declare const MAX_DOCTOR_BUILD_LOG_SCAN_BYTES: number;
 export interface HealthCheck {
     name: string;
-    status: 'pass' | 'warn' | 'fail' | 'info';
+    status: 'pass' | 'warn' | 'fail' | 'info' | 'skipped';
     message: string;
+    /** Why a `skipped` check did not run (doctor-mode.ts). */
+    skippedReason?: 'read-only' | 'offline';
     fix?: string;
+    /**
+     * How `fix` is applied, when it differs by result rather than by component
+     * (see FIX_APPLY in doctor-json.ts); `doctor --json`'s `fix_safety`.
+     */
+    fixSafety?: 'auto' | 'confirm' | 'manual';
 }
-export declare function runCommand(command: string, timeoutMs?: number): Promise<string>;
+export declare function runCommand(command: string, timeoutMs?: number, env?: NodeJS.ProcessEnv): Promise<string>;
+/**
+ * Runs npm with a throwaway cache (doctor --read-only, issue #335): every npm
+ * command writes into its cache dir — `npm view` cache entries, a debug log
+ * even for `npm root -g`, an update-notifier stamp — which is ~/.npm otherwise.
+ */
+export declare function withThrowawayNpmCache<T>(fn: (env: NodeJS.ProcessEnv) => Promise<T>): Promise<T>;
 export declare function checkNodeVersion(version?: string): Promise<HealthCheck>;
 export declare function checkNpmVersion(): Promise<HealthCheck>;
 export declare function checkGit(): Promise<HealthCheck>;
 export declare function checkGitRepo(): Promise<HealthCheck>;
 export declare function checkDiskSpace(): Promise<HealthCheck>;
 export declare function checkBuildTools(): Promise<HealthCheck>;
-export declare function checkVersionFreshness(): Promise<HealthCheck>;
+export declare function checkVersionFreshness(opts?: {
+    readOnly?: boolean;
+}): Promise<HealthCheck>;
 export declare function checkClaudeCode(): Promise<HealthCheck>;
 /**
  * i-055-cli: crash reporting had no in-product surfacing at all, and its

package/dist/src/commands/doctor-env-checks.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor-env-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-env-checks.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAYH,eAAO,MAAM,oBAAoB,QAAc,CAAC;AAChD,eAAO,MAAM,uBAAuB,QAAmB,CAAC;AACxD,eAAO,MAAM,0BAA0B,QAAa,CAAC;AACrD,eAAO,MAAM,oBAAoB,KAAK,CAAC;AACvC,eAAO,MAAM,uBAAuB,QAAkB,CAAC;AACvD,eAAO,MAAM,+BAA+B,QAAY,CAAC;AAIzD,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,MAAM,GAAG,MAAM,GAAG,SAAS,CAAC;IACtD,OAAO,EAAE,MAAM,CAAC;IAChB,0DAA0D;IAC1D,aAAa,CAAC,EAAE,WAAW,GAAG,SAAS,CAAC;IACxC,GAAG,CAAC,EAAE,MAAM,CAAC;IACb;;;OAGG;IACH,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,QAAQ,CAAC;CAC3C;AAED,wBAAsB,UAAU,CAC9B,OAAO,EAAE,MAAM,EACf,SAAS,SAAO,EAChB,GAAG,GAAE,MAAM,CAAC,UAAe,GAC1B,OAAO,CAAC,MAAM,CAAC,CASjB;AAED;;;;GAIG;AACH,wBAAsB,qBAAqB,CAAC,CAAC,EAC3C,EAAE,EAAE,CAAC,GAAG,EAAE,MAAM,CAAC,UAAU,KAAK,OAAO,CAAC,CAAC,CAAC,GACzC,OAAO,CAAC,CAAC,CAAC,CAOZ;AAED,wBAAsB,gBAAgB,CAAC,OAAO,GAAE,MAAwB,GAAG,OAAO,CAAC,WAAW,CAAC,CAkC9F;AAED,wBAAsB,eAAe,IAAI,OAAO,CAAC,WAAW,CAAC,CAyC5D;AAED,wBAAsB,QAAQ,IAAI,OAAO,CAAC,WAAW,CAAC,CAYrD;AAED,wBAAsB,YAAY,IAAI,OAAO,CAAC,WAAW,CAAC,CAYzD;AAED,wBAAsB,cAAc,IAAI,OAAO,CAAC,WAAW,CAAC,CA+B3D;AAED,wBAAsB,eAAe,IAAI,OAAO,CAAC,WAAW,CAAC,CA4B5D;AAED,wBAAsB,qBAAqB,CACzC,IAAI,GAAE;IAAE,QAAQ,CAAC,EAAE,OAAO,CAAA;CAAO,GAChC,OAAO,CAAC,WAAW,CAAC,CAwFtB;AAED,wBAAsB,eAAe,IAAI,OAAO,CAAC,WAAW,CAAC,CAa5D;AAED;;;;;;;GAOG;AACH,wBAAsB,mBAAmB,IAAI,OAAO,CAAC,WAAW,CAAC,CAwBhE;AAED,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,OAAO,CAAC,CAgB1D"}

package/dist/src/commands/doctor-env-checks.js

@@ -3,7 +3,9 @@
  * Node, npm, git, disk, TypeScript, Claude CLI, version freshness
  */
 import { exec, execSync } from 'node:child_process';
-import { existsSync, readFileSync, statSync } from 'node:fs';
+import { existsSync, mkdtempSync, readFileSync, rmSync, statSync } from 'node:fs';
+import { createRequire } from 'node:module';
+import { tmpdir } from 'node:os';
 import { dirname, join } from 'node:path';
 import { fileURLToPath } from 'node:url';
 import { promisify } from 'node:util';
@@ -16,16 +18,30 @@ export const MAX_DOCTOR_PID_BYTES = 64; // 64 bytes
 export const MAX_DOCTOR_HELPER_BYTES = 2 * 1024 * 1024; // 2 MB
 export const MAX_DOCTOR_BUILD_LOG_SCAN_BYTES = 64 * 1024; // 64 KB
 const execAsync = promisify(exec);
-export async function runCommand(command, timeoutMs = 5000) {
+export async function runCommand(command, timeoutMs = 5000, env = {}) {
     const { stdout } = await execAsync(command, {
         encoding: 'utf8',
         timeout: timeoutMs,
         shell: process.platform === 'win32' ? 'cmd.exe' : '/bin/sh',
-        env: { ...process.env },
+        env: { ...process.env, ...env },
         windowsHide: true,
     });
     return stdout.trim();
 }
+/**
+ * Runs npm with a throwaway cache (doctor --read-only, issue #335): every npm
+ * command writes into its cache dir — `npm view` cache entries, a debug log
+ * even for `npm root -g`, an update-notifier stamp — which is ~/.npm otherwise.
+ */
+export async function withThrowawayNpmCache(fn) {
+    const cache = mkdtempSync(join(tmpdir(), 'monomind-doctor-npm-'));
+    try {
+        return await fn({ npm_config_cache: cache, npm_config_update_notifier: 'false' });
+    }
+    finally {
+        rmSync(cache, { recursive: true, force: true });
+    }
+}
 export async function checkNodeVersion(version = process.version) {
     // i-090: the floor is 22.12.0, not just major 22 — a `major >= requiredMajor`
     // compare would wrongly pass 22.0.0–22.11.x, which is the exact defect this
@@ -177,17 +193,15 @@ export async function checkBuildTools() {
             message: 'N/A — no package.json (not a Node.js project)',
         };
     }
+    // Resolved from node_modules, not `npx tsc --version`: without a local
+    // TypeScript, npx downloads the unrelated `tsc` package from the registry
+    // (issue #335 — doctor must not use the network or write npm's cache).
     try {
-        const tscVersion = await runCommand('npx tsc --version', 10000);
-        if (!tscVersion || tscVersion.includes('not found')) {
-            return {
-                name: 'TypeScript',
-                status: 'warn',
-                message: 'Not installed locally',
-                fix: 'npm install -D typescript',
-            };
-        }
-        return { name: 'TypeScript', status: 'pass', message: tscVersion.replace('Version ', 'v') };
+        const pkgPath = createRequire(join(process.cwd(), 'package.json')).resolve('typescript/package.json');
+        const { version } = JSON.parse(readFileSync(pkgPath, 'utf8'));
+        if (!version)
+            throw new Error('no version');
+        return { name: 'TypeScript', status: 'pass', message: `v${version}` };
     }
     catch {
         return {
@@ -198,7 +212,7 @@ export async function checkBuildTools() {
         };
     }
 }
-export async function checkVersionFreshness() {
+export async function checkVersionFreshness(opts = {}) {
     try {
         let currentVersion = '0.0.0';
         try {
@@ -236,7 +250,8 @@ export async function checkVersionFreshness() {
             process.cwd().includes('_npx');
         let latestVersion = currentVersion;
         try {
-            latestVersion = (await runCommand('npm view monomind version', 5000)).trim();
+            const view = (env) => runCommand('npm view monomind version', 5000, env);
+            latestVersion = (await (opts.readOnly ? withThrowawayNpmCache(view) : view())).trim();
         }
         catch {
             return {
@@ -333,7 +348,11 @@ export async function installClaudeCode() {
     try {
         output.writeln();
         output.writeln(output.bold('Installing Claude Code CLI...'));
-        execSync('npm install -g @anthropic-ai/claude-code', { encoding: 'utf8', stdio: 'inherit' });
+        // npm's output goes to stderr: under `doctor --json` stdout is the JSON.
+        execSync('npm install -g @anthropic-ai/claude-code', {
+            encoding: 'utf8',
+            stdio: ['inherit', process.stderr, process.stderr],
+        });
         output.writeln(output.success('Claude Code CLI installed successfully!'));
         return true;
     }

package/dist/src/commands/doctor-env-checks.js.map

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package/dist/src/commands/doctor-fresh-install.d.ts

@@ -0,0 +1,9 @@
+/**
+ * P2-14: Quiet the fresh-install doctor. On a brand-new install, 9+ checks
+ * report warnings that are actually expected states. Detect fresh install
+ * (`.monomind/` dir < 5 min old) and downgrade expected warnings to info
+ * (the caller skips this under --verbose).
+ */
+import type { DoctorResult } from './doctor-json.js';
+export declare function downgradeFreshInstallWarnings(settled: DoctorResult[], cwd: string): void;
+//# sourceMappingURL=doctor-fresh-install.d.ts.map

package/dist/src/commands/doctor-fresh-install.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-fresh-install.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-fresh-install.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAIH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAerD,wBAAgB,6BAA6B,CAAC,OAAO,EAAE,YAAY,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,IAAI,CAmBxF"}

package/dist/src/commands/doctor-fresh-install.js

@@ -0,0 +1,43 @@
+/**
+ * P2-14: Quiet the fresh-install doctor. On a brand-new install, 9+ checks
+ * report warnings that are actually expected states. Detect fresh install
+ * (`.monomind/` dir < 5 min old) and downgrade expected warnings to info
+ * (the caller skips this under --verbose).
+ */
+import { statSync } from 'node:fs';
+import * as path from 'node:path';
+const FRESH_EXPECTED = new Set([
+    'Memory Database',
+    'Memory Knowledge Graph',
+    'Second Brain Model',
+    'Graph freshness',
+    'MCP Servers',
+    'Worker Metrics',
+    'Security Audit',
+    'Helper Files',
+    'AppleDouble Sidecars',
+    'Monoes Memory',
+]);
+export function downgradeFreshInstallWarnings(settled, cwd) {
+    const monomindDir = path.join(cwd, '.monomind');
+    let isFreshInstall = false;
+    try {
+        const stat = statSync(monomindDir);
+        isFreshInstall = Date.now() - stat.birthtimeMs < 5 * 60 * 1000; // < 5 min old
+    }
+    catch {
+        /* dir doesn't exist — not our project */
+    }
+    if (!isFreshInstall)
+        return;
+    for (let i = 0; i < settled.length; i++) {
+        if (settled[i].status === 'warn' && FRESH_EXPECTED.has(settled[i].name)) {
+            settled[i] = {
+                ...settled[i],
+                status: 'info',
+                message: `${settled[i].message} (expected on fresh install — run with --verbose for details)`,
+            };
+        }
+    }
+}
+//# sourceMappingURL=doctor-fresh-install.js.map

package/dist/src/commands/doctor-fresh-install.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-fresh-install.js","sourceRoot":"","sources":["../../../src/commands/doctor-fresh-install.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AACnC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAGlC,MAAM,cAAc,GAAG,IAAI,GAAG,CAAC;IAC7B,iBAAiB;IACjB,wBAAwB;IACxB,oBAAoB;IACpB,iBAAiB;IACjB,aAAa;IACb,gBAAgB;IAChB,gBAAgB;IAChB,cAAc;IACd,sBAAsB;IACtB,eAAe;CAChB,CAAC,CAAC;AAEH,MAAM,UAAU,6BAA6B,CAAC,OAAuB,EAAE,GAAW;IAChF,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,WAAW,CAAC,CAAC;IAChD,IAAI,cAAc,GAAG,KAAK,CAAC;IAC3B,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,QAAQ,CAAC,WAAW,CAAC,CAAC;QACnC,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,WAAW,GAAG,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,CAAC,cAAc;IAChF,CAAC;IAAC,MAAM,CAAC;QACP,yCAAyC;IAC3C,CAAC;IACD,IAAI,CAAC,cAAc;QAAE,OAAO;IAC5B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACxC,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,KAAK,MAAM,IAAI,cAAc,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;YACxE,OAAO,CAAC,CAAC,CAAC,GAAG;gBACX,GAAG,OAAO,CAAC,CAAC,CAAC;gBACb,MAAM,EAAE,MAAe;gBACvB,OAAO,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,OAAO,+DAA+D;aAC9F,CAAC;QACJ,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/src/commands/doctor-hook-monograph-checks.d.ts

@@ -1,8 +1,10 @@
-import type { HealthCheck } from './doctor-env-checks.js';
+import { type HealthCheck } from './doctor-env-checks.js';
 export interface ResolveOptions {
     globalRoot?: string | null;
     npxCacheDir?: string;
     pathEnv?: string;
+    /** Read the graph's commit without touching its -shm/-wal files (doctor --read-only). */
+    readOnly?: boolean;
 }
 export declare function checkHookMonograph(cwd?: string, opts?: ResolveOptions): Promise<HealthCheck>;
 //# sourceMappingURL=doctor-hook-monograph-checks.d.ts.map

package/dist/src/commands/doctor-hook-monograph-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor-hook-monograph-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-hook-monograph-checks.ts"],"names":[],"mappings":"AAeA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAM1D,MAAM,WAAW,cAAc;IAC7B,UAAU,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAiCD,wBAAsB,kBAAkB,CACtC,GAAG,GAAE,MAAsB,EAC3B,IAAI,CAAC,EAAE,cAAc,GACpB,OAAO,CAAC,WAAW,CAAC,CA4CtB"}
+{"version":3,"file":"doctor-hook-monograph-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-hook-monograph-checks.ts"],"names":[],"mappings":"AAeA,OAAO,EAAE,KAAK,WAAW,EAAqC,MAAM,wBAAwB,CAAC;AAM7F,MAAM,WAAW,cAAc;IAC7B,UAAU,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,yFAAyF;IACzF,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAoCD,wBAAsB,kBAAkB,CACtC,GAAG,GAAE,MAAsB,EAC3B,IAAI,CAAC,EAAE,cAAc,GACpB,OAAO,CAAC,WAAW,CAAC,CAmDtB"}

package/dist/src/commands/doctor-hook-monograph-checks.js

@@ -13,16 +13,20 @@ import { existsSync } from 'node:fs';
 import { createRequire } from 'node:module';
 import { dirname, join } from 'node:path';
 import { fileURLToPath } from 'node:url';
+import { runCommand, withThrowawayNpmCache } from './doctor-env-checks.js';
 const NAME = 'Hook graph rebuild';
 const REL = join('.claude', 'helpers', 'utils', 'monograph-resolve.cjs');
 const HERE = dirname(fileURLToPath(import.meta.url));
-function loadResolver(cwd) {
-    const candidates = [
-        join(cwd, REL),
+function loadResolver(cwd, readOnly) {
+    const bundled = [
         // src/commands → ../.. is the package root; dist/src/commands → ../../..
         join(HERE, '..', '..', REL),
         join(HERE, '..', '..', '..', REL),
     ];
+    // Read-only prefers this build's copy: a project's older copy opens the
+    // graph db in a way that updates SQLite's -shm file (a stale copy is what
+    // the `helpers` check reports).
+    const candidates = readOnly ? [...bundled, join(cwd, REL)] : [join(cwd, REL), ...bundled];
     const file = candidates.find((p) => existsSync(p));
     try {
         return file ? createRequire(import.meta.url)(file) : null;
@@ -32,7 +36,7 @@ function loadResolver(cwd) {
     }
 }
 export async function checkHookMonograph(cwd = process.cwd(), opts) {
-    const mod = loadResolver(cwd);
+    const mod = loadResolver(cwd, opts?.readOnly);
     if (!mod) {
         return {
             name: NAME,
@@ -41,6 +45,11 @@ export async function checkHookMonograph(cwd = process.cwd(), opts) {
             fix: 'npx monomind init upgrade',
         };
     }
+    // The resolver's own `npm root -g` would write npm's log under ~/.npm.
+    if (opts?.readOnly && opts.globalRoot === undefined) {
+        const root = await withThrowawayNpmCache((env) => runCommand('npm root -g', 5000, env)).catch(() => null);
+        opts = { ...opts, globalRoot: root || null };
+    }
     const d = mod.diagnose(cwd, opts);
     const limit = mod.STALE_LIMIT;
     const pastLimit = d.dbExists && d.behind !== null && d.behind > limit;

package/dist/src/commands/doctor-hook-monograph-checks.js.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor-hook-monograph-checks.js","sourceRoot":"","sources":["../../../src/commands/doctor-hook-monograph-checks.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AACH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAoB,UAAU,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAE7F,MAAM,IAAI,GAAG,oBAAoB,CAAC;AAClC,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,EAAE,SAAS,EAAE,OAAO,EAAE,uBAAuB,CAAC,CAAC;AACzE,MAAM,IAAI,GAAG,OAAO,CAAC,aAAa,CAAC,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AA0BrD,SAAS,YAAY,CAAC,GAAW,EAAE,QAAkB;IACnD,MAAM,OAAO,GAAG;QACd,yEAAyE;QACzE,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC;QAC3B,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC;KAClC,CAAC;IACF,wEAAwE;IACxE,0EAA0E;IAC1E,gCAAgC;IAChC,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,GAAG,OAAO,CAAC,CAAC;IAC1F,MAAM,IAAI,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC;IACnD,IAAI,CAAC;QACH,OAAO,IAAI,CAAC,CAAC,CAAE,aAAa,CAAC,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAmB,CAAC,CAAC,CAAC,IAAI,CAAC;IAC/E,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,GAAG,GAAW,OAAO,CAAC,GAAG,EAAE,EAC3B,IAAqB;IAErB,MAAM,GAAG,GAAG,YAAY,CAAC,GAAG,EAAE,IAAI,EAAE,QAAQ,CAAC,CAAC;IAC9C,IAAI,CAAC,GAAG,EAAE,CAAC;QACT,OAAO;YACL,IAAI,EAAE,IAAI;YACV,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,+EAA+E;YACxF,GAAG,EAAE,2BAA2B;SACjC,CAAC;IACJ,CAAC;IACD,uEAAuE;IACvE,IAAI,IAAI,EAAE,QAAQ,IAAI,IAAI,CAAC,UAAU,KAAK,SAAS,EAAE,CAAC;QACpD,MAAM,IAAI,GAAG,MAAM,qBAAqB,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,UAAU,CAAC,aAAa,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC,KAAK,CAC3F,GAAG,EAAE,CAAC,IAAI,CACX,CAAC;QACF,IAAI,GAAG,EAAE,GAAG,IAAI,EAAE,UAAU,EAAE,IAAI,IAAI,IAAI,EAAE,CAAC;IAC/C,CAAC;IACD,MAAM,CAAC,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;IAClC,MAAM,KAAK,GAAG,GAAG,CAAC,WAAW,CAAC;IAC9B,MAAM,SAAS,GAAG,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,MAAM,KAAK,IAAI,IAAI,CAAC,CAAC,MAAM,GAAG,KAAK,CAAC;IACtE,IAAI,CAAC,CAAC,CAAC,UAAU,EAAE,CAAC;QAClB,OAAO;YACL,IAAI,EAAE,IAAI;YACV,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM;YACnC,OAAO,EAAE,SAAS;gBAChB,CAAC,CAAC,SAAS,CAAC,CAAC,MAAM,wDAAwD,CAAC,CAAC,OAAO,EAAE;gBACtF,CAAC,CAAC,sCAAsC,CAAC,CAAC,OAAO,EAAE;YACrD,GAAG,EAAE,CAAC,CAAC,GAAG,IAAI,SAAS;SACxB,CAAC;IACJ,CAAC;IACD,IAAI,SAAS,EAAE,CAAC;QACd,OAAO;YACL,IAAI,EAAE,IAAI;YACV,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,SAAS,CAAC,CAAC,MAAM,+BAA+B,KAAK,+DAA+D;YAC7H,GAAG,EAAE,8BAA8B;SACpC,CAAC;IACJ,CAAC;IACD,IAAI,CAAC,CAAC,UAAU,IAAI,CAAC,CAAC,UAAU,CAAC,EAAE,KAAK,KAAK,EAAE,CAAC;QAC9C,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,UAAU,CAAC,OAAO,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,UAAU,CAAC,OAAO,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;QACnF,OAAO;YACL,IAAI,EAAE,IAAI;YACV,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,2BAA2B,KAAK,KAAK,CAAC,CAAC,UAAU,CAAC,OAAO,EAAE;YACpE,GAAG,EAAE,CAAC,CAAC,UAAU,CAAC,GAAG,IAAI,+BAA+B;SACzD,CAAC;IACJ,CAAC;IACD,MAAM,GAAG,GAAG,CAAC,CAAC,QAAQ;QACpB,CAAC,CAAC,sBAAsB,CAAC,CAAC,QAAQ,CAAC,OAAO,KAAK,CAAC,CAAC,QAAQ,CAAC,MAAM,GAAG;QACnE,CAAC,CAAC,6BAA6B,CAAC,CAAC,MAAM,GAAG,CAAC;IAC7C,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,gCAAgC,GAAG,EAAE,EAAE,CAAC;AACxF,CAAC"}

package/dist/src/commands/doctor-hook-settings-checks.d.ts

@@ -0,0 +1,5 @@
+import type { HealthCheck } from './doctor-env-checks.js';
+/** The hooks agent picking needs, as `Event: <script> <subcommand>`. */
+export declare const PICK_HOOKS: string[];
+export declare function checkHookSettings(cwd?: string): Promise<HealthCheck>;
+//# sourceMappingURL=doctor-hook-settings-checks.d.ts.map

package/dist/src/commands/doctor-hook-settings-checks.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-hook-settings-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-hook-settings-checks.ts"],"names":[],"mappings":"AAcA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAM1D,wEAAwE;AACxE,eAAO,MAAM,UAAU,UAKtB,CAAC;AAEF,wBAAsB,iBAAiB,CAAC,GAAG,GAAE,MAAsB,GAAG,OAAO,CAAC,WAAW,CAAC,CAyBzF"}

package/dist/src/commands/doctor-hook-settings-checks.js

@@ -0,0 +1,50 @@
+/**
+ * Doctor — are the monomind hooks in .claude/settings.json current?
+ *
+ * `init upgrade` used to merge only the auto-memory hooks, so an upgraded
+ * install could lack the hooks agent picking depends on (the prompt route
+ * hook, the Task|Agent pre-agent adherence hook, the SubagentStart/Stop
+ * capture hooks) and keep timeouts written in milliseconds, which Claude
+ * Code reads as seconds. Both are fixed by `monomind init upgrade --settings`.
+ */
+import { existsSync, readFileSync, statSync } from 'node:fs';
+import { join } from 'node:path';
+import { missingMonomindHooks, msTimeoutHooks } from '../init/hook-settings.js';
+import { generateSettings } from '../init/settings-generator.js';
+import { DEFAULT_INIT_OPTIONS } from '../init/types.js';
+const NAME = 'Hook Settings';
+const FIX = 'monomind init upgrade --settings';
+const MAX_SETTINGS_BYTES = 1024 * 1024;
+/** The hooks agent picking needs, as `Event: <script> <subcommand>`. */
+export const PICK_HOOKS = [
+    'UserPromptSubmit: hook-handler.cjs route',
+    'PreToolUse: hook-handler.cjs pre-agent',
+    'SubagentStart: handlers/capture-handler.cjs subagent-start',
+    'SubagentStop: handlers/capture-handler.cjs subagent-stop',
+];
+export async function checkHookSettings(cwd = process.cwd()) {
+    const settingsPath = join(cwd, '.claude', 'settings.json');
+    if (!existsSync(settingsPath))
+        return { name: NAME, status: 'warn', message: '.claude/settings.json not found', fix: FIX };
+    let hooks;
+    try {
+        if (statSync(settingsPath).size > MAX_SETTINGS_BYTES)
+            return { name: NAME, status: 'warn', message: 'settings.json too large to parse' };
+        hooks = JSON.parse(readFileSync(settingsPath, 'utf-8'))?.hooks ?? {};
+    }
+    catch {
+        return { name: NAME, status: 'warn', message: 'Could not parse .claude/settings.json' };
+    }
+    const reference = generateSettings(DEFAULT_INIT_OPTIONS).hooks;
+    const missing = missingMonomindHooks(hooks, reference).filter((h) => PICK_HOOKS.includes(h));
+    const msTimeouts = msTimeoutHooks(hooks);
+    const problems = [];
+    if (missing.length)
+        problems.push(`missing pick hook(s): ${missing.join(', ')}`);
+    if (msTimeouts.length)
+        problems.push(`${msTimeouts.length} monomind hook timeout(s) in milliseconds (Claude Code reads seconds), e.g. ${msTimeouts[0]}`);
+    return problems.length
+        ? { name: NAME, status: 'warn', message: problems.join('; '), fix: FIX }
+        : { name: NAME, status: 'pass', message: 'pick hooks present, timeouts in seconds' };
+}
+//# sourceMappingURL=doctor-hook-settings-checks.js.map

package/dist/src/commands/doctor-hook-settings-checks.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-hook-settings-checks.js","sourceRoot":"","sources":["../../../src/commands/doctor-hook-settings-checks.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AACH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AAC7D,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAqB,oBAAoB,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AACnG,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,kBAAkB,CAAC;AAGxD,MAAM,IAAI,GAAG,eAAe,CAAC;AAC7B,MAAM,GAAG,GAAG,kCAAkC,CAAC;AAC/C,MAAM,kBAAkB,GAAG,IAAI,GAAG,IAAI,CAAC;AAEvC,wEAAwE;AACxE,MAAM,CAAC,MAAM,UAAU,GAAG;IACxB,0CAA0C;IAC1C,wCAAwC;IACxC,4DAA4D;IAC5D,0DAA0D;CAC3D,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,iBAAiB,CAAC,GAAG,GAAW,OAAO,CAAC,GAAG,EAAE;IACjE,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,eAAe,CAAC,CAAC;IAC3D,IAAI,CAAC,UAAU,CAAC,YAAY,CAAC;QAC3B,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,iCAAiC,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC;IAC9F,IAAI,KAAmB,CAAC;IACxB,IAAI,CAAC;QACH,IAAI,QAAQ,CAAC,YAAY,CAAC,CAAC,IAAI,GAAG,kBAAkB;YAClD,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,kCAAkC,EAAE,CAAC;QACrF,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC,EAAE,KAAK,IAAI,EAAE,CAAC;IACvE,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,uCAAuC,EAAE,CAAC;IAC1F,CAAC;IAED,MAAM,SAAS,GAAI,gBAAgB,CAAC,oBAAoB,CAA6B,CAAC,KAAK,CAAC;IAC5F,MAAM,OAAO,GAAG,oBAAoB,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7F,MAAM,UAAU,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC;IACzC,MAAM,QAAQ,GAAa,EAAE,CAAC;IAC9B,IAAI,OAAO,CAAC,MAAM;QAAE,QAAQ,CAAC,IAAI,CAAC,yBAAyB,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjF,IAAI,UAAU,CAAC,MAAM;QACnB,QAAQ,CAAC,IAAI,CACX,GAAG,UAAU,CAAC,MAAM,+EAA+E,UAAU,CAAC,CAAC,CAAC,EAAE,CACnH,CAAC;IACJ,OAAO,QAAQ,CAAC,MAAM;QACpB,CAAC,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE;QACxE,CAAC,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,yCAAyC,EAAE,CAAC;AACzF,CAAC"}

package/dist/src/commands/doctor-json.d.ts

@@ -0,0 +1,41 @@
+/**
+ * `monomind doctor --json` payload (v1), advertised as capability
+ * `doctor-json` — doc/agent-exec-protocol.md §10.
+ */
+import type { CommandContext, CommandResult } from '../types.js';
+import type { HealthCheck } from './doctor-env-checks.js';
+/** A check result tagged with the component (`-c` name) that produced it. */
+export type DoctorResult = HealthCheck & {
+    component?: string;
+};
+/** The `doctor --json` payload (v1). Advertised as capability `doctor-json`. */
+export declare function doctorJsonPayload(ctx: CommandContext, result: CommandResult): {
+    v: number;
+    cwd: string;
+    read_only: boolean;
+    offline: boolean;
+    success: boolean;
+    error: string | null;
+    summary: {
+        passed: number;
+        warnings: number;
+        failed: number;
+        info: number;
+        skipped: number;
+    };
+    results: {
+        component: string | null;
+        name: string;
+        status: "fail" | "info" | "pass" | "skipped" | "warn";
+        message: string;
+        fix: string | null;
+        fix_safety: "auto" | "confirm" | "manual" | null;
+        fix_flag: "--fix" | "--install" | null;
+        skipped_reason: "offline" | "read-only" | null;
+    }[];
+    fixes: {
+        component: string;
+        outcome: string;
+    }[];
+};
+//# sourceMappingURL=doctor-json.d.ts.map

package/dist/src/commands/doctor-json.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-json.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-json.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AACjE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAG1D,6EAA6E;AAC7E,MAAM,MAAM,YAAY,GAAG,WAAW,GAAG;IAAE,SAAS,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC;AAoBhE,gFAAgF;AAChF,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,cAAc,EAAE,MAAM,EAAE,aAAa;;;;;;;;QA8BtE,MAAM;QACN,QAAQ;QACR,MAAM;QACN,IAAI;QACJ,OAAO;;;;;;;;;;;;;mBA/BY,MAAM;iBAAW,MAAM;;EAoC/C"}

package/dist/src/commands/doctor-json.js

@@ -0,0 +1,60 @@
+/**
+ * `monomind doctor --json` payload (v1), advertised as capability
+ * `doctor-json` — doc/agent-exec-protocol.md §10.
+ */
+import { resolveDoctorMode } from './doctor-mode.js';
+/**
+ * How each component's fix is applied. Components not listed only carry a
+ * hint (`fix` text) for a person to follow. A result's own `fixSafety`
+ * overrides its component's safety (e.g. a helpers warning `--fix` can't
+ * apply is `manual`).
+ *  - auto: local, repeatable, applied by `--fix`
+ *  - confirm: installs software or runs network/sudo commands; the caller
+ *    asks a person first, then passes `flag`
+ */
+const FIX_APPLY = {
+    helpers: { safety: 'auto', flag: '--fix' },
+    gitignore: { safety: 'auto', flag: '--fix' },
+    appledouble: { safety: 'auto', flag: '--fix' },
+    sidecars: { safety: 'auto', flag: '--fix' },
+    'monoes-tools': { safety: 'confirm', flag: '--fix' },
+    claude: { safety: 'confirm', flag: '--install' },
+};
+/** The `doctor --json` payload (v1). Advertised as capability `doctor-json`. */
+export function doctorJsonPayload(ctx, result) {
+    const data = (result.data ?? {});
+    const results = (data.results ?? []).map((r) => {
+        const apply = r.component ? FIX_APPLY[r.component] : undefined;
+        const safety = r.fixSafety ?? apply?.safety ?? 'manual';
+        return {
+            component: r.component ?? null,
+            name: r.name,
+            status: r.status,
+            message: r.message,
+            fix: r.fix ?? null,
+            fix_safety: r.fix ? safety : null,
+            fix_flag: r.fix && safety !== 'manual' ? (apply?.flag ?? null) : null,
+            skipped_reason: r.skippedReason ?? null,
+        };
+    });
+    const count = (st) => results.filter((r) => r.status === st).length;
+    const mode = resolveDoctorMode(ctx.flags);
+    return {
+        v: 1,
+        cwd: ctx.cwd || process.cwd(),
+        read_only: mode.readOnly,
+        offline: mode.offline,
+        success: result.success,
+        error: data.error ?? null,
+        summary: {
+            passed: count('pass'),
+            warnings: count('warn'),
+            failed: count('fail'),
+            info: count('info'),
+            skipped: count('skipped'),
+        },
+        results,
+        fixes: data.fixes ?? [],
+    };
+}
+//# sourceMappingURL=doctor-json.js.map

package/dist/src/commands/doctor-json.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-json.js","sourceRoot":"","sources":["../../../src/commands/doctor-json.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAIH,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAKrD;;;;;;;;GAQG;AACH,MAAM,SAAS,GAAgF;IAC7F,OAAO,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE;IAC1C,SAAS,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE;IAC5C,WAAW,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE;IAC9C,QAAQ,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE;IAC3C,cAAc,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,EAAE,OAAO,EAAE;IACpD,MAAM,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,EAAE,WAAW,EAAE;CACjD,CAAC;AAEF,gFAAgF;AAChF,MAAM,UAAU,iBAAiB,CAAC,GAAmB,EAAE,MAAqB;IAC1E,MAAM,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,IAAI,EAAE,CAI9B,CAAC;IACF,MAAM,OAAO,GAAG,CAAC,IAAI,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;QAC7C,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;QAC/D,MAAM,MAAM,GAAG,CAAC,CAAC,SAAS,IAAI,KAAK,EAAE,MAAM,IAAI,QAAQ,CAAC;QACxD,OAAO;YACL,SAAS,EAAE,CAAC,CAAC,SAAS,IAAI,IAAI;YAC9B,IAAI,EAAE,CAAC,CAAC,IAAI;YACZ,MAAM,EAAE,CAAC,CAAC,MAAM;YAChB,OAAO,EAAE,CAAC,CAAC,OAAO;YAClB,GAAG,EAAE,CAAC,CAAC,GAAG,IAAI,IAAI;YAClB,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI;YACjC,QAAQ,EAAE,CAAC,CAAC,GAAG,IAAI,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI;YACrE,cAAc,EAAE,CAAC,CAAC,aAAa,IAAI,IAAI;SACxC,CAAC;IACJ,CAAC,CAAC,CAAC;IACH,MAAM,KAAK,GAAG,CAAC,EAAU,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;IAC5E,MAAM,IAAI,GAAG,iBAAiB,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;IAC1C,OAAO;QACL,CAAC,EAAE,CAAC;QACJ,GAAG,EAAE,GAAG,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE;QAC7B,SAAS,EAAE,IAAI,CAAC,QAAQ;QACxB,OAAO,EAAE,IAAI,CAAC,OAAO;QACrB,OAAO,EAAE,MAAM,CAAC,OAAO;QACvB,KAAK,EAAE,IAAI,CAAC,KAAK,IAAI,IAAI;QACzB,OAAO,EAAE;YACP,MAAM,EAAE,KAAK,CAAC,MAAM,CAAC;YACrB,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC;YACvB,MAAM,EAAE,KAAK,CAAC,MAAM,CAAC;YACrB,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC;YACnB,OAAO,EAAE,KAAK,CAAC,SAAS,CAAC;SAC1B;QACD,OAAO;QACP,KAAK,EAAE,IAAI,CAAC,KAAK,IAAI,EAAE;KACxB,CAAC;AACJ,CAAC"}

package/dist/src/commands/doctor-mode.d.ts

@@ -0,0 +1,28 @@
+/**
+ * `doctor --read-only` and `doctor --offline` (issue #335): a health check a
+ * caller can run without it changing anything or touching the network.
+ * doc/agent-exec-protocol.md §10.
+ *
+ * Read-only is the default under `--json` (mono-agent's checks never change
+ * anything) unless `--fix`/`--install` asks for writes. It is about files, not
+ * the network: the version check still asks the npm registry, through a
+ * throwaway npm cache. `--offline` skips every check that needs the network.
+ */
+import type { CommandOption, CommandResult } from '../types.js';
+import type { HealthCheck } from './doctor-env-checks.js';
+export interface DoctorMode {
+    readOnly: boolean;
+    offline: boolean;
+}
+export type SkipReason = 'read-only' | 'offline';
+export declare const DOCTOR_MODE_OPTIONS: CommandOption[];
+export declare function resolveDoctorMode(flags: Record<string, unknown>): DoctorMode & {
+    error?: string;
+};
+/** `Mode: read-only, offline` for the human header, or '' for a plain run. */
+export declare function modeLabel(mode: DoctorMode): string;
+/** A run refused before any check (e.g. `--read-only --fix`). */
+export declare function doctorError(error: string): CommandResult;
+/** The result for a check this mode skips, or null when it runs. */
+export declare function skippedCheck(component: string, mode: DoctorMode, single: boolean): HealthCheck | null;
+//# sourceMappingURL=doctor-mode.d.ts.map

package/dist/src/commands/doctor-mode.d.ts.map

@@ -0,0 +1 @@
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