@monoes/monomindcli 2.16.12 → 2.16.14

package/dist/src/commands/cleanup.js

@@ -8,257 +8,15 @@
 // here throws "require is not defined" in the built output even though it
 // typechecks and passes tests. Guarded by no-cjs-require-in-esm.test.ts.
 import { execSync } from 'node:child_process';
-import { existsSync, lstatSync, readdirSync, readFileSync, rmSync, statSync, unlinkSync, } from 'node:fs';
+import { existsSync, readFileSync, rmSync, statSync, unlinkSync } from 'node:fs';
 import { homedir } from 'node:os';
 import { join } from 'node:path';
-import { atomicWriteFile } from '../init/fs-helpers.js';
 import { output } from '../output.js';
-import { isProvablyDeleted } from './cleanup-origin.js';
+import { findOrphanedProjectData, findStaleRegistryEntries, pruneRegistryEntries, } from './cleanup-data.js';
 import { applyCleanupEntry, buildCleanupPlan, isMonomindSourceRepo, } from './cleanup-plan.js';
-/** Scratch pruning (--scratch): taskdev handoff files and loop state. */
-// monolean: manual flag only — upgrade path: invoke from the `cache` background worker so crashed-run scratch is pruned without anyone remembering the flag
-const SCRATCH_MAX_AGE_MS = 7 * 24 * 60 * 60 * 1000; // taskdev scratch older than this is stale
-const LOOP_STALE_GRACE_MS = 24 * 60 * 60 * 1000; // a live loop reschedules every <=1h; overdue by a day = abandoned
-/** Orphaned per-project data (--data): ~/.monomind/projects/<slug> dirs whose
- * source project is gone, plus dead lancedb/ dirs left by the pre-2.3.1 engine. */
-const UNKNOWN_DIR_MAX_AGE_MS = 30 * 24 * 60 * 60 * 1000;
-/**
- * Entries of the project registry (~/.monomind-projects.json, written by
- * `init` for `init upgrade --all`) whose project was deleted, by the same rule
- * as project-data dirs. Exported for tests; unreadable registry → none.
- */
-export function findStaleRegistryEntries(registryPath) {
-    try {
-        const reg = JSON.parse(readFileSync(registryPath, 'utf-8'));
-        if (!Array.isArray(reg.projects))
-            return [];
-        return reg.projects.filter((p) => typeof p === 'string' && p.length > 0 && isProvablyDeleted(p));
-    }
-    catch {
-        return [];
-    }
-}
-/** Rewrite the registry without `stale`, re-read first so a concurrent `init` registration survives. */
-function pruneRegistryEntries(registryPath, stale) {
-    const reg = JSON.parse(readFileSync(registryPath, 'utf-8'));
-    const drop = new Set(stale);
-    const kept = reg.projects.filter((p) => !(typeof p === 'string' && drop.has(p)));
-    const removed = reg.projects.length - kept.length;
-    if (removed > 0) {
-        reg.projects = kept;
-        atomicWriteFile(registryPath, JSON.stringify(reg, null, 2), 'utf-8');
-    }
-    return removed;
-}
-/**
- * Find prunable entries under the per-project data base (default
- * ~/.monomind/projects). Exported for tests — `baseDir`/`now` injectable.
- *
- * Classification per dir:
- * - `origin.json` present and its recorded path still exists → keep the dir,
- *   but flag a leftover `lancedb/` subdir (dead since the SQLite engine swap).
- * - `origin.json` present, recorded path provably deleted (not merely on an
- *   unmounted volume, see {@link isProvablyDeleted}) → orphaned → prune.
- * - no `origin.json` (pre-2.3.1 dirs can't prove their origin) → prune only
- *   when untouched for {@link UNKNOWN_DIR_MAX_AGE_MS} — or immediately with
- *   `--aggressive`, which treats unprovable dirs as junk (safe: every live
- *   project rewrites origin.json on its next memory access).
- */
-export function findOrphanedProjectData(baseDir, now, aggressive) {
-    const out = [];
-    if (!existsSync(baseDir))
-        return out;
-    for (const name of readdirSync(baseDir)) {
-        if (name.startsWith('.'))
-            continue;
-        const dir = join(baseDir, name);
-        try {
-            if (!lstatSync(dir).isDirectory())
-                continue;
-        }
-        catch {
-            continue;
-        }
-        // Staleness must consider the files writes actually touch: appends to
-        // lancedb/memory.db and origin.json refreshes do NOT bump the slug dir's
-        // own mtime, so an actively-used project would otherwise look 30d stale.
-        const mtimeOf = (p) => {
-            try {
-                return lstatSync(p).mtimeMs;
-            }
-            catch {
-                return 0;
-            }
-        };
-        const mtime = Math.max(mtimeOf(dir), mtimeOf(join(dir, 'origin.json')), mtimeOf(join(dir, 'lancedb', 'memory.db')), mtimeOf(join(dir, 'memory.db')));
-        const originFile = join(dir, 'origin.json');
-        let originPath = null;
-        let hasOrigin = false;
-        try {
-            originPath = String(JSON.parse(readFileSync(originFile, 'utf-8')).path ?? '');
-            hasOrigin = originPath.length > 0;
-        }
-        catch {
-            /* no/corrupt marker */
-        }
-        if (hasOrigin && originPath && existsSync(originPath)) {
-            // NOTE: the directory is *named* lancedb for historical reasons, but the
-            // current SQLite engine keeps its LIVE memory.db inside it. Only genuine
-            // LanceDB leftovers (*.lance datasets, no memory.db) are dead weight.
-            const lance = join(dir, 'lancedb');
-            if (existsSync(lance) && !existsSync(join(lance, 'memory.db'))) {
-                let hasLanceData = false;
-                try {
-                    hasLanceData = readdirSync(lance).some((f) => f.endsWith('.lance') || f === '__manifest');
-                }
-                catch {
-                    /* unreadable — leave it */
-                }
-                if (hasLanceData)
-                    out.push({
-                        path: lance,
-                        description: `dead lancedb store (project: ${originPath})`,
-                        size: 0,
-                    });
-            }
-            continue;
-        }
-        if (hasOrigin && originPath) {
-            // An unmounted volume / disconnected network share makes the whole
-            // subtree vanish temporarily, and that must never count as "project
-            // deleted" — see isProvablyDeleted.
-            if (isProvablyDeleted(originPath)) {
-                out.push({
-                    path: dir,
-                    description: `orphaned project data (origin gone: ${originPath})`,
-                    size: 0,
-                });
-            }
-        }
-        else if (aggressive || now - mtime > UNKNOWN_DIR_MAX_AGE_MS) {
-            out.push({
-                path: dir,
-                description: aggressive
-                    ? 'unverifiable project data (no origin marker)'
-                    : 'unverifiable project data (untouched >30d)',
-                size: 0,
-            });
-        }
-    }
-    return out;
-}
-/**
- * Find stale mastermind scratch under `.monomind/taskdev/` and `.monomind/loops/`.
- * Exported for tests. Never returns `progress.md` (the taskdev recovery ledger),
- * directories, or loop JSON it cannot parse — deleting the unclassifiable loses data.
- *
- * A loop JSON is only ever classified as abandoned when it has a real, positive,
- * numeric `nextRunAt` timestamp that is more than a day in the past. Live producers
- * write `nextRunAt: 0` (real /do loops) or `nextRunAt: null` (dashboard) — those,
- * along with missing/non-numeric values, are never eligible for deletion regardless
- * of `status`, since a crashed daemon can leave a stale `status: 'running'` behind.
- */
-export function findStaleScratch(cwd, now) {
-    const out = [];
-    const taskdevDir = join(cwd, '.monomind', 'taskdev');
-    if (existsSync(taskdevDir)) {
-        for (const f of readdirSync(taskdevDir)) {
-            if (f === 'progress.md')
-                continue; // the ledger is the recovery map — never auto-prune
-            try {
-                const st = lstatSync(join(taskdevDir, f));
-                if (st.isFile() && now - st.mtimeMs > SCRATCH_MAX_AGE_MS) {
-                    out.push({
-                        path: join('.monomind', 'taskdev', f),
-                        description: 'stale taskdev scratch',
-                        size: st.size,
-                    });
-                }
-            }
-            catch {
-                /* raced away or unreadable — leave it */
-            }
-        }
-    }
-    const loopsDir = join(cwd, '.monomind', 'loops');
-    if (existsSync(loopsDir)) {
-        const entries = readdirSync(loopsDir);
-        const jsonStems = new Set(entries.filter((f) => f.endsWith('.json')).map((f) => f.replace(/\.json$/, '')));
-        for (const f of entries) {
-            try {
-                const st = lstatSync(join(loopsDir, f));
-                if (!st.isFile())
-                    continue;
-                if (f.endsWith('.json')) {
-                    const parsed = JSON.parse(readFileSync(join(loopsDir, f), 'utf8'));
-                    const { nextRunAt } = parsed;
-                    const isStale = typeof nextRunAt === 'number' &&
-                        Number.isFinite(nextRunAt) &&
-                        nextRunAt > 0 &&
-                        now - nextRunAt > LOOP_STALE_GRACE_MS;
-                    if (isStale) {
-                        out.push({
-                            path: join('.monomind', 'loops', f),
-                            description: 'abandoned loop state',
-                            size: st.size,
-                        });
-                    }
-                }
-                else if (f.endsWith('.stop') && !jsonStems.has(f.replace(/\.stop$/, ''))) {
-                    out.push({
-                        path: join('.monomind', 'loops', f),
-                        description: 'orphaned loop stopfile',
-                        size: st.size,
-                    });
-                }
-            }
-            catch {
-                /* unparseable or unreadable — never delete what we cannot classify */
-            }
-        }
-    }
-    return out;
-}
-/**
- * Report (dry run) or delete a batch of file/dir items, printing the same
- * `[would remove]` / `[removed]` / `[failed]` lines used across cleanup modes.
- * Shared by the scratch branch; the main artifact loop keeps its own copy
- * because of the `--keep-config` `.claude/settings.json` preservation special case.
- */
-function removeOrReport(cwd, items, dryRun) {
-    let removed = 0;
-    let removedSize = 0;
-    for (const item of items) {
-        const sizeStr = formatSize(item.size);
-        const typeLabel = item.type === 'dir' ? 'dir ' : 'file';
-        if (dryRun) {
-            output.writeln(output.warning(`  [would remove] ${typeLabel}  ${item.path}  (${sizeStr}) - ${item.description}`));
-        }
-        else {
-            try {
-                rmSync(join(cwd, item.path), { recursive: item.type === 'dir', force: true });
-                output.writeln(output.success(`  [removed] ${typeLabel}  ${item.path}  (${sizeStr}) - ${item.description}`));
-                removed++;
-                removedSize += item.size;
-            }
-            catch (err) {
-                output.writeln(output.error(`  [failed] ${typeLabel}  ${item.path}  - ${err instanceof Error ? err.message : String(err)}`));
-            }
-        }
-    }
-    return { removed, removedSize };
-}
-/**
- * Format bytes into a human-readable string
- */
-function formatSize(bytes) {
-    if (bytes === 0)
-        return '0 B';
-    const units = ['B', 'KB', 'MB', 'GB'];
-    const i = Math.min(Math.floor(Math.log(bytes) / Math.log(1024)), units.length - 1);
-    const value = bytes / 1024 ** i;
-    return `${value.toFixed(i === 0 ? 0 : 1)} ${units[i]}`;
-}
+import { findStaleScratch, formatSize, removeOrReport } from './cleanup-scratch.js';
+export { findOrphanedProjectData, findStaleRegistryEntries } from './cleanup-data.js';
+export { findStaleScratch } from './cleanup-scratch.js';
 /**
  * Cleanup command definition
  */

package/dist/src/commands/cleanup.js.map

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package/dist/src/commands/doctor-gitignore-checks.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Doctor — .gitignore coverage check and its --fix.
+ * Extracted from doctor-project-checks.ts.
+ */
+import { type HealthCheck } from './doctor-env-checks.js';
+export declare function checkGitignoreCoverage(root?: string): Promise<HealthCheck>;
+/** Creates or appends the missing gitignore entries. Returns true if it wrote.
+ *  Append-only and idempotent: never rewrites lines the user already has. */
+export declare function fixGitignoreCoverage(root?: string): Promise<boolean>;
+//# sourceMappingURL=doctor-gitignore-checks.d.ts.map

package/dist/src/commands/doctor-gitignore-checks.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-gitignore-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-gitignore-checks.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAKH,OAAO,EAAE,KAAK,WAAW,EAA8B,MAAM,wBAAwB,CAAC;AAkDtF,wBAAsB,sBAAsB,CAAC,IAAI,SAAgB,GAAG,OAAO,CAAC,WAAW,CAAC,CAqCvF;AAyBD;6EAC6E;AAC7E,wBAAsB,oBAAoB,CAAC,IAAI,SAAgB,GAAG,OAAO,CAAC,OAAO,CAAC,CA2BjF"}

package/dist/src/commands/doctor-gitignore-checks.js

@@ -0,0 +1,141 @@
+/**
+ * Doctor — .gitignore coverage check and its --fix.
+ * Extracted from doctor-project-checks.ts.
+ */
+import { appendFileSync, existsSync, readFileSync, statSync, writeFileSync } from 'node:fs';
+import { join } from 'node:path';
+import { MONOMIND_NEVER_COMMIT } from '../init/never-commit.js';
+import { MAX_DOCTOR_GITIGNORE_BYTES } from './doctor-env-checks.js';
+// i-052: derived from MONOMIND_NEVER_COMMIT (write-runtime-config.ts), the
+// single source of truth for files that must never be committed — this was
+// the THIRD independently-maintained list that omitted `dashboard-token`,
+// and it is the one written specifically to catch gitignore gaps. Consuming
+// the shared list here means `monomind doctor --fix` (fixGitignoreCoverage
+// below) appends any missing entry for existing users for free.
+const REQUIRED_GITIGNORE_PATTERNS = [
+    { pattern: '.monomind/sessions/', reason: 'session files contain cwd and machine paths' },
+    { pattern: '.monomind/data/', reason: 'intelligence data with edit file paths' },
+    { pattern: '.monomind/metrics/', reason: 'metrics with file path references' },
+    { pattern: '.monomind/knowledge/', reason: 'knowledge chunks with local file content' },
+    { pattern: '.monomind/*.json', reason: 'root-level runtime JSON (control, registry, routing)' },
+    { pattern: '.monomind/*.jsonl', reason: 'root-level event logs (decisions, routing-feedback)' },
+    { pattern: '**/.monomind/sessions/', reason: 'nested session files in sub-packages' },
+    { pattern: '**/.monomind/*.json', reason: 'nested runtime JSON in sub-packages' },
+    { pattern: 'data/sessions/', reason: 'session files with machine paths' },
+    { pattern: 'data/mastermind-*.json', reason: 'mastermind session data' },
+    { pattern: 'data/mastermind-*.jsonl', reason: 'mastermind event logs' },
+    { pattern: '**/.claude-flow/', reason: 'claude-flow runtime data with paths' },
+    { pattern: '.monomind/monoswarm/', reason: 'monoswarm state files' },
+    ...MONOMIND_NEVER_COMMIT.map(({ file, reason }) => ({ pattern: `.monomind/${file}`, reason })),
+];
+/** Strip the parts that don't change what a pattern matches, so `**​/.monomind/`,
+ *  `.monomind/` and `.monomind` all compare equal. A gitignore pattern with no
+ *  leading slash already matches at every depth, so `**​/` is redundant. */
+function normalizeGitignorePattern(p) {
+    return p
+        .replace(/^\/+/, '')
+        .replace(/^\*\*\//, '')
+        .replace(/\/+$/, '');
+}
+/** True when ignoring `line` already protects everything `required` covers.
+ *  Beyond exact matches this understands directory containment: a repo with a
+ *  blanket `.monomind/` is fully covered for `.monomind/sessions/`,
+ *  `.monomind/*.json` and friends, and should not be nagged to add each one. */
+function gitignoreLineCovers(line, required) {
+    const l = normalizeGitignorePattern(line);
+    const r = normalizeGitignorePattern(required);
+    if (!l)
+        return false;
+    if (l === r)
+        return true;
+    // A bare directory entry covers every path beneath it, but only when the
+    // entry itself is literal — `.monomind/*.json` must not be treated as an
+    // ancestor of `.monomind/sessions`.
+    return !l.includes('*') && r.startsWith(`${l}/`);
+}
+export async function checkGitignoreCoverage(root = process.cwd()) {
+    const gitignorePath = join(root, '.gitignore');
+    if (!existsSync(gitignorePath)) {
+        // The old hint was `echo ".monomind/\n**/.monomind/" >> .gitignore`, which
+        // writes a literal backslash-n (sh/bash echo does not interpret escapes
+        // without -e) — one junk line matching nothing. `--fix` now writes the file
+        // directly, so point at that rather than at a command to copy-paste.
+        return {
+            name: 'Gitignore Coverage',
+            status: 'warn',
+            message: 'No .gitignore found — all monomind runtime paths are unprotected',
+            fix: 'monomind doctor --fix   (creates .gitignore covering .monomind/ and secrets)',
+        };
+    }
+    if (statSync(gitignorePath).size > MAX_DOCTOR_GITIGNORE_BYTES) {
+        return { name: 'Gitignore Coverage', status: 'warn', message: '.gitignore too large to parse' };
+    }
+    const lines = readFileSync(gitignorePath, 'utf-8')
+        .split('\n')
+        .map((l) => l.trim())
+        .filter((l) => l && !l.startsWith('#'));
+    const missing = REQUIRED_GITIGNORE_PATTERNS.filter(({ pattern }) => !lines.some((l) => gitignoreLineCovers(l, pattern)));
+    if (missing.length === 0)
+        return {
+            name: 'Gitignore Coverage',
+            status: 'pass',
+            message: 'All monomind runtime paths are gitignored',
+        };
+    const missingList = missing.map((m) => m.pattern).join(', ');
+    return {
+        name: 'Gitignore Coverage',
+        status: 'warn',
+        message: `${missing.length} runtime path(s) not in .gitignore: ${missingList}`,
+        fix: 'monomind doctor --fix   (appends the missing entries)',
+    };
+}
+/** Patterns written by `doctor --fix` when there is no .gitignore at all.
+ *  Covers monomind runtime state plus the standard secrets files, since a repo
+ *  with no .gitignore has nothing protecting those either. The runtime paths
+ *  are the specific ones the check requires, never a blanket `.monomind/`:
+ *  git cannot re-include a file below an ignored directory, so a blanket line
+ *  disables init's own `.monomind/.gitignore` allow-list (config.yaml,
+ *  CAPABILITIES.md, org definitions). */
+const GITIGNORE_FIX_PATTERNS = [
+    '# monomind runtime state',
+    ...REQUIRED_GITIGNORE_PATTERNS.map(({ pattern }) => pattern),
+    '',
+    '# secrets / local env',
+    '.env',
+    '.env.*',
+    '!.env.example',
+    '*.pem',
+    '*.key',
+    '',
+    '# dependencies / build output',
+    'node_modules/',
+    'dist/',
+];
+/** Creates or appends the missing gitignore entries. Returns true if it wrote.
+ *  Append-only and idempotent: never rewrites lines the user already has. */
+export async function fixGitignoreCoverage(root = process.cwd()) {
+    const gitignorePath = join(root, '.gitignore');
+    try {
+        if (!existsSync(gitignorePath)) {
+            writeFileSync(gitignorePath, `${GITIGNORE_FIX_PATTERNS.join('\n')}\n`, 'utf-8');
+            return true;
+        }
+        if (statSync(gitignorePath).size > MAX_DOCTOR_GITIGNORE_BYTES)
+            return false;
+        const existing = readFileSync(gitignorePath, 'utf-8');
+        const lines = existing
+            .split('\n')
+            .map((l) => l.trim())
+            .filter((l) => l && !l.startsWith('#'));
+        const missing = REQUIRED_GITIGNORE_PATTERNS.map((m) => m.pattern).filter((pattern) => !lines.some((l) => gitignoreLineCovers(l, pattern)));
+        if (missing.length === 0)
+            return false;
+        const prefix = existing.endsWith('\n') || existing === '' ? '' : '\n';
+        appendFileSync(gitignorePath, `${prefix}\n# monomind runtime state\n${missing.join('\n')}\n`, 'utf-8');
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+//# sourceMappingURL=doctor-gitignore-checks.js.map

package/dist/src/commands/doctor-gitignore-checks.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/doctor-helpers-checks.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Doctor — hook helper checks: installed helpers vs the bundled copies
+ * (freshness and --fix) and guidance gate wiring.
+ * Extracted from doctor-project-checks.ts.
+ */
+import { type HealthCheck } from './doctor-env-checks.js';
+export declare function fixStaleHelpers(): Promise<boolean>;
+export declare function checkHelpersFresh(): Promise<HealthCheck>;
+export declare function checkGuidanceGates(): Promise<HealthCheck>;
+//# sourceMappingURL=doctor-helpers-checks.d.ts.map

package/dist/src/commands/doctor-helpers-checks.d.ts.map

@@ -0,0 +1 @@
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