@monoes/monomindcli 2.16.12 → 2.16.13

package/dist/src/commands/doctor-memory-checks.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/doctor-monograph-checks.d.ts

@@ -0,0 +1,9 @@
+/**
+ * Doctor — monograph checks: installed monograph/memory packages and graph
+ * freshness. Extracted from doctor-project-checks.ts.
+ */
+import { type HealthCheck } from './doctor-env-checks.js';
+export declare function checkMonograph(): Promise<HealthCheck>;
+export declare function checkMonographFreshness(): Promise<HealthCheck>;
+export declare function checkMonoesMemory(): Promise<HealthCheck>;
+//# sourceMappingURL=doctor-monograph-checks.d.ts.map

package/dist/src/commands/doctor-monograph-checks.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor-monograph-checks.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor-monograph-checks.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAWH,OAAO,EACL,KAAK,WAAW,EAGjB,MAAM,wBAAwB,CAAC;AAwChC,wBAAsB,cAAc,IAAI,OAAO,CAAC,WAAW,CAAC,CAe3D;AAmDD,wBAAsB,uBAAuB,IAAI,OAAO,CAAC,WAAW,CAAC,CA4LpE;AAED,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,WAAW,CAAC,CAkB9D"}

package/dist/src/commands/doctor-monograph-checks.js

@@ -0,0 +1,331 @@
+/**
+ * Doctor — monograph checks: installed monograph/memory packages and graph
+ * freshness. Extracted from doctor-project-checks.ts.
+ */
+import { execSync } from 'node:child_process';
+import { existsSync, readdirSync, readFileSync, statSync } from 'node:fs';
+import { createRequire } from 'node:module';
+import { dirname, join } from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { classifyNativeModuleError, extractNativeModulePackageName, } from '../utils/native-error.js';
+import { MAX_DOCTOR_BUILD_LOG_SCAN_BYTES, MAX_DOCTOR_PKG_BYTES, } from './doctor-env-checks.js';
+// Resolve an installed package's package.json through Node's real ESM
+// resolution algorithm instead of guessing relative node_modules layouts.
+// The old candidate-path approach assumed a nested install shape that never
+// matches how npm actually hoists dependencies (flat local installs, npx's
+// isolated cache dir, and global installs all put @monoes/* packages as
+// siblings, not nested under this package's dist/ output) — so it always
+// reported "not found" even when the package was present and importable.
+// import.meta.resolve() is used (rather than createRequire().resolve()())
+// because @monoes/monograph and @monoes/memory are ESM-only (no "require"
+// export condition), so a CJS require.resolve() fails outright even when the
+// package is installed. Their exports maps also don't expose a "./package.json"
+// subpath, so the entry file is resolved first and package.json is found by
+// walking up from it.
+function _findInstalledPackageJson(specifier) {
+    try {
+        const entryUrl = import.meta.resolve(specifier);
+        let dir = dirname(fileURLToPath(entryUrl));
+        for (;;) {
+            const candidate = join(dir, 'package.json');
+            if (existsSync(candidate) && statSync(candidate).size <= MAX_DOCTOR_PKG_BYTES) {
+                try {
+                    const pkg = JSON.parse(readFileSync(candidate, 'utf-8'));
+                    if (pkg.name === specifier)
+                        return { path: candidate, pkg };
+                }
+                catch {
+                    /* keep walking */
+                }
+            }
+            const parent = dirname(dir);
+            if (parent === dir)
+                return null;
+            dir = parent;
+        }
+    }
+    catch {
+        return null;
+    }
+}
+export async function checkMonograph() {
+    const found = _findInstalledPackageJson('@monoes/monograph');
+    if (found) {
+        return {
+            name: 'Monograph',
+            status: 'pass',
+            message: `v${found.pkg.version || '?'} available (knowledge graph engine)`,
+        };
+    }
+    return {
+        name: 'Monograph',
+        status: 'warn',
+        message: 'Package not found (knowledge graph disabled)',
+        fix: 'npm install -g monomind@latest',
+    };
+}
+function formatAge(ms) {
+    // Filesystem mtime can round to whole seconds and land a hair ahead of
+    // Date.now() for a file written moments ago — clamp so that never reads
+    // as a negative, nonsensical age.
+    const minutes = Math.floor(Math.max(0, ms) / 60000);
+    return minutes < 60 ? `${minutes}m` : `${Math.floor(minutes / 60)}h`;
+}
+/**
+ * Best-effort "when was this package's own install last touched" probe,
+ * used only to soften a build.log-based failure (see #244) — never to
+ * harden one, so a wrong or missing answer here is always safe. Resolves
+ * `pkgName` from `cwd` (works through pnpm's symlinked store too, since
+ * `require.resolve` follows symlinks to the real file) and returns the
+ * latest mtime among its package.json and any `build/`/`prebuilds/` binary
+ * output, or null if the package can't be resolved at all — the caller
+ * treats null as "no evidence either way," not as "confirmed still broken."
+ */
+function findNativeModuleLastModifiedMs(pkgName, cwd) {
+    try {
+        const require = createRequire(join(cwd, 'noop.js'));
+        const entry = require.resolve(pkgName, { paths: [cwd] });
+        let pkgDir = dirname(entry);
+        for (let i = 0; i < 12 && !existsSync(join(pkgDir, 'package.json')); i++) {
+            const parent = dirname(pkgDir);
+            if (parent === pkgDir)
+                return null;
+            pkgDir = parent;
+        }
+        let latestMs = statSync(join(pkgDir, 'package.json')).mtimeMs;
+        for (const sub of ['build', 'prebuilds']) {
+            const subDir = join(pkgDir, sub);
+            if (!existsSync(subDir))
+                continue;
+            const stack = [subDir];
+            while (stack.length > 0) {
+                const current = stack.pop();
+                for (const entryName of readdirSync(current)) {
+                    const full = join(current, entryName);
+                    const st = statSync(full);
+                    if (st.isDirectory())
+                        stack.push(full);
+                    else if (st.mtimeMs > latestMs)
+                        latestMs = st.mtimeMs;
+                }
+            }
+        }
+        return latestMs;
+    }
+    catch {
+        return null;
+    }
+}
+export async function checkMonographFreshness() {
+    try {
+        const cwd = process.cwd();
+        const dbPath = join(cwd, '.monomind', 'monograph.db');
+        const lockPath = join(cwd, '.monomind', 'graph', 'build.lock');
+        const statsPath = join(cwd, '.monomind', 'graph', 'stats.json');
+        const logPath = join(cwd, '.monomind', 'graph', 'build.log');
+        const hasDb = existsSync(dbPath);
+        if (!hasDb && !existsSync(statsPath)) {
+            // No graph yet — but that's one of three very different situations: a
+            // build is genuinely still running, one already ran and crashed (e.g.
+            // executor.ts's initKnowledgeGraph or monograph-freshen.cjs's detached
+            // spawn hit a native-module ABI mismatch), or nothing was ever
+            // attempted. Both spawners share this same build.lock/build.log pair,
+            // so this one check covers either origin.
+            //
+            // Lock existence (not freshness) is the right signal here: both
+            // spawners write build.lock with their OWN pid (the short-lived parent
+            // that immediately exits after spawning a detached child — not the
+            // child actually doing the build, so checking that pid's liveness
+            // would be checking the wrong process) and unlink it in a `finally`
+            // that runs on both success and a thrown/rejected build — so it's only
+            // ever left behind while the child is still actually running, or in
+            // the rare case of a hard OS-level kill that bypassed the `finally`.
+            // A large monorepo's first index can legitimately run well past any
+            // fixed "freshness" window, so age must not turn a live build into a
+            // false failure report. Neither spawner passes buildAsync an
+            // onProgress callback, so a clean run writes nothing to build.log
+            // until it's done — there's no heartbeat to check the log against, so
+            // this is worded to cover both "still running" and "was killed
+            // without cleaning up" rather than asserting liveness that can't
+            // actually be confirmed from disk.
+            if (existsSync(lockPath)) {
+                const ageMs = (() => {
+                    try {
+                        return Date.now() - statSync(lockPath).mtimeMs;
+                    }
+                    catch {
+                        return 0;
+                    }
+                })();
+                return {
+                    name: 'Graph freshness',
+                    status: 'warn',
+                    message: `Monograph build in progress, or was interrupted — started ${formatAge(ageMs)} ago`,
+                };
+            }
+            if (existsSync(logPath)) {
+                let logTail = '';
+                try {
+                    const raw = readFileSync(logPath, 'utf8');
+                    // Bound the scan to the last MAX_BUILD_LOG_SCAN_BYTES, not the last
+                    // 4000 — that window was cutting the actual "Error:"/"Exception:"
+                    // text out of real Node uncaught-exception dumps. A native-module
+                    // load failure (e.g. `bindings` walking a dozen candidate .node
+                    // paths before giving up) prints its message and stack FIRST, then
+                    // a long list of tried paths — a single such dump easily runs
+                    // 7-8KB, so a 4000-char tail can land entirely inside the path
+                    // list and see no error keyword at all, even though the log is
+                    // nothing but a crash report. 64KB comfortably fits many realistic
+                    // crash dumps (including chained causes) while still bounding this
+                    // append-only, never-truncated file for a long-lived project that
+                    // has failed and retried many times.
+                    logTail =
+                        raw.length > MAX_DOCTOR_BUILD_LOG_SCAN_BYTES
+                            ? raw.slice(-MAX_DOCTOR_BUILD_LOG_SCAN_BYTES)
+                            : raw;
+                }
+                catch {
+                    /* unreadable log — treat as no evidence, fall through below */
+                }
+                // build.log only proves a build ran at some point — a *successful*
+                // build also writes into it before producing monograph.db, so its
+                // mere existence isn't evidence of failure (e.g. monograph.db was
+                // deleted afterward, leaving a clean run's log behind). Only treat
+                // this as a failure when the tail actually looks error-shaped;
+                // otherwise this isn't distinguishable from "never built" and
+                // should read that way rather than as an unsupported "fail".
+                const classified = logTail ? classifyNativeModuleError(logTail) : null;
+                const looksLikeFailure = classified !== null || /error|exception|traceback/i.test(logTail);
+                if (looksLikeFailure) {
+                    let logMtimeMs = 0;
+                    let logAgeStr = '';
+                    try {
+                        logMtimeMs = statSync(logPath).mtimeMs;
+                        logAgeStr = ` (${formatAge(Date.now() - logMtimeMs)} ago)`;
+                    }
+                    catch {
+                        /* ignore */
+                    }
+                    if (classified) {
+                        // build.log is append-only (see the comment above), so this
+                        // failure might be historical — already fixed by a `npm
+                        // rebuild` that ran after this log entry, just not yet
+                        // confirmed by a fresh `monograph build`. When the implicated
+                        // module's own files are demonstrably newer than the log entry,
+                        // that's concrete on-disk evidence it was touched since, so
+                        // soften to a warning instead of asserting it's still broken.
+                        // No evidence either way (can't resolve the module, or its
+                        // files are no newer) falls through to the unchanged 'fail'.
+                        const pkgName = extractNativeModulePackageName(logTail);
+                        const moduleMs = pkgName ? findNativeModuleLastModifiedMs(pkgName, cwd) : null;
+                        if (pkgName && moduleMs !== null && moduleMs > logMtimeMs) {
+                            return {
+                                name: 'Graph freshness',
+                                status: 'warn',
+                                message: `${classified}${logAgeStr} — but \`${pkgName}\` was modified more recently ` +
+                                    `(${formatAge(Date.now() - moduleMs)} ago) than this log entry, so it may ` +
+                                    'already be fixed. Run monograph build to confirm.',
+                                fix: 'mcp__monomind__monograph_build codeOnly:true',
+                            };
+                        }
+                    }
+                    return classified
+                        ? { name: 'Graph freshness', status: 'fail', message: `${classified}${logAgeStr}` }
+                        : {
+                            name: 'Graph freshness',
+                            status: 'fail',
+                            message: `Monograph build failed${logAgeStr} — see .monomind/graph/build.log for details`,
+                            fix: 'cat .monomind/graph/build.log',
+                        };
+                }
+            }
+            return {
+                name: 'Graph freshness',
+                status: 'warn',
+                message: 'No monograph graph built yet',
+                fix: 'mcp__monomind__monograph_build codeOnly:true',
+            };
+        }
+        // Deliberately NOT folding build.lock's mtime into this — a lock only
+        // means "a build started," not "the graph was built at this time," and
+        // counting it here would report a stale graph as freshly-built the
+        // moment a rebuild kicks off, before it's actually produced anything.
+        let buildMs = 0;
+        if (hasDb) {
+            try {
+                buildMs = Math.max(buildMs, statSync(dbPath).mtimeMs);
+            }
+            catch {
+                /* ignore */
+            }
+        }
+        try {
+            buildMs = Math.max(buildMs, statSync(statsPath).mtimeMs);
+        }
+        catch {
+            /* ignore */
+        }
+        if (buildMs === 0)
+            return {
+                name: 'Graph freshness',
+                status: 'warn',
+                message: 'Graph exists but build time unknown',
+            };
+        const buildIso = new Date(buildMs).toISOString();
+        let commitsBehind = 0;
+        try {
+            const out = execSync(`git rev-list --count --since='${buildIso}' HEAD 2>/dev/null`, {
+                encoding: 'utf8',
+                timeout: 2000,
+                cwd,
+            }).trim();
+            commitsBehind = parseInt(out, 10) || 0;
+        }
+        catch {
+            /* git unavailable */
+        }
+        const ageStr = `${formatAge(Date.now() - buildMs)} ago`;
+        if (commitsBehind === 0)
+            return {
+                name: 'Graph freshness',
+                status: 'pass',
+                message: `FRESH — built ${ageStr}, 0 commits behind`,
+            };
+        if (commitsBehind <= 5)
+            return {
+                name: 'Graph freshness',
+                status: 'warn',
+                message: `${commitsBehind} commit(s) behind — built ${ageStr}`,
+                fix: 'mcp__monomind__monograph_build codeOnly:true',
+            };
+        return {
+            name: 'Graph freshness',
+            status: 'fail',
+            message: `STALE — ${commitsBehind} commits behind (built ${ageStr})`,
+            fix: 'mcp__monomind__monograph_build codeOnly:true',
+        };
+    }
+    catch {
+        return { name: 'Graph freshness', status: 'warn', message: 'Could not check graph freshness' };
+    }
+}
+export async function checkMonoesMemory() {
+    // See _findInstalledPackageJson() above checkMonograph(): resolve through
+    // Node's ESM module resolution instead of guessing a node_modules layout
+    // that doesn't match how npm actually hoists dependencies.
+    const found = _findInstalledPackageJson('@monoes/memory');
+    if (found) {
+        return {
+            name: 'Vector Memory',
+            status: 'pass',
+            message: `@monoes/memory v${found.pkg.version || '?'} (HNSW search enabled)`,
+        };
+    }
+    return {
+        name: 'Vector Memory',
+        status: 'warn',
+        message: '@monoes/memory not installed (vector search disabled)',
+        fix: 'npm install @monoes/memory',
+    };
+}
+//# sourceMappingURL=doctor-monograph-checks.js.map

package/dist/src/commands/doctor-monograph-checks.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/doctor-project-checks.d.ts

@@ -2,38 +2,15 @@
  * Doctor — project/monomind health checks
  * Config, memory, API keys, MCP, monograph, helpers, routing, gates, gitignore, worker metrics
  */
-import type { HealthCheck } from './doctor-env-checks.js';
+import { type HealthCheck } from './doctor-env-checks.js';
+export { checkGitignoreCoverage, fixGitignoreCoverage } from './doctor-gitignore-checks.js';
+export { checkGuidanceGates, checkHelpersFresh, fixStaleHelpers } from './doctor-helpers-checks.js';
+export { checkDocumentExtractors, checkMemoryDatabase, checkMemoryKnowledgeGraph, checkMemoryProficiency, checkProjectRoot, checkSecondBrainModel, } from './doctor-memory-checks.js';
+export { checkMonoesMemory, checkMonograph, checkMonographFreshness, } from './doctor-monograph-checks.js';
+export { checkAgentRegistry, checkMonoesIntegration } from './doctor-routing-checks.js';
+export { checkMetricsFreshness, checkSecurityAuditFindings } from './doctor-worker-checks.js';
 export type { HealthCheck };
 export declare function checkConfigFile(): Promise<HealthCheck>;
-/** o-16 (AC-6): the marker walk that resolves "this project" for the Memory
- *  & Knowledge store can silently adopt a wrong ancestor — the incident that
- *  motivated this check was a shared scratch parent's bare `.monomind`
- *  capturing an unrelated fixture, with no visible symptom until a search
- *  came back empty. Disclose the resolved root and why it was chosen, so a
- *  user can see which directory their brain is keyed to without reading code
- *  or debug logs. Always 'info': the resolution itself is never a health
- *  problem, only the failure to see it was.
- *
- *  Named/scoped to "Memory Project Root", not a bare "Project Root" (o-16
- *  revision 1, reviewer MAJOR 2): `MONOMIND_PROJECT_ROOT` has a SECOND,
- *  independent consumer — `mcp-tools/guidance-tools.ts:findProjectRoot()`,
- *  which uses a different marker (`.claude`) and can legitimately resolve a
- *  different directory (see the divergence explained at
- *  `memory-bridge.ts`'s `getProjectRoot()` doc comment). A generic "Project
- *  Root" label would claim there is one true answer when this commit is
- *  what creates a state where two resolvers can disagree — this check must
- *  not be the thing that misleads about that. */
-export declare function checkProjectRoot(): Promise<HealthCheck>;
-export declare function checkMemoryDatabase(): Promise<HealthCheck>;
-/** Memory knowledge graph (cognee port): entities/relations/rules distilled
- * from sessions and org runs. Informational — an empty graph on a fresh
- * project is normal, so it never fails. */
-export declare function checkMemoryKnowledgeGraph(): Promise<HealthCheck>;
-/** Second Brain: when there is any indexed knowledge — ingested docs in this
- * project, the personal global brain, or the monograph god-node chunk —
- * semantic search needs the local embedding model. Its absence is silent
- * (search degrades to keyword matching), so surface it here instead. */
-export declare function checkSecondBrainModel(): Promise<HealthCheck>;
 export declare function checkApiKeys(): Promise<HealthCheck>;
 export interface McpCheckOptions {
     /**
@@ -47,35 +24,6 @@ export interface McpCheckOptions {
     timeoutMs?: number;
 }
 export declare function checkMcpServers(options?: McpCheckOptions): Promise<HealthCheck>;
-export declare function checkMonograph(): Promise<HealthCheck>;
-export declare function checkMonographFreshness(): Promise<HealthCheck>;
-export declare function checkMonoesMemory(): Promise<HealthCheck>;
-export declare function fixStaleHelpers(): Promise<boolean>;
-export declare function checkHelpersFresh(): Promise<HealthCheck>;
-export declare function checkMonoesIntegration(): Promise<HealthCheck>;
-export declare function checkGitignoreCoverage(root?: string): Promise<HealthCheck>;
-/** Creates or appends the missing gitignore entries. Returns true if it wrote.
- *  Append-only and idempotent: never rewrites lines the user already has. */
-export declare function fixGitignoreCoverage(root?: string): Promise<boolean>;
-export declare function checkAgentRegistry(opts?: {
-    readOnly?: boolean;
-}): Promise<HealthCheck>;
-export declare function checkGuidanceGates(): Promise<HealthCheck>;
-/**
- * Worker metrics freshness — reports the age of the @monoes/hooks worker
- * output files (written at session start with a 6h staleness gate, or on
- * demand via `monomind hooks worker run <name>`), so missing/stale worker
- * output is visible without digging through .monomind/metrics.
- */
-export declare function checkMetricsFreshness(): Promise<HealthCheck>;
-/**
- * Surfaces critical findings from the security-audit worker output.
- */
-export declare function checkSecurityAuditFindings(): Promise<HealthCheck>;
-/**
- * AutoMem proficiency check — reports memory learning health
- */
-export declare function checkMemoryProficiency(): Promise<HealthCheck>;
 /** AppleDouble sidecars (`._name`) under `.claude/`.
  *
  * macOS writes these whenever a file carrying extended attributes is copied to
@@ -97,11 +45,4 @@ export declare function checkAppleDoubleSidecars(): Promise<HealthCheck>;
 export declare function findAppleDoubleSidecars(cwd: string): string[];
 /** Delete every AppleDouble sidecar found. Returns how many were removed. */
 export declare function fixAppleDoubleSidecars(cwd: string): number;
-/** Per-extractor health for Second Brain document ingestion (MEM-8/MEM-9):
- * one check per format family (PDF, DOCX, XLSX/XLS/ODS, PPTX/ODT/ODP/EPUB,
- * legacy DOC/PPT/Pages) instead of a single blanket "documents" check, so
- * `doctor` can report exactly which formats are functional vs broken.
- * No-op (empty array) when the documents capability isn't active — nothing
- * to report if this project doesn't ingest documents. */
-export declare function checkDocumentExtractors(): Promise<HealthCheck[]>;
 //# sourceMappingURL=doctor-project-checks.d.ts.map

package/dist/src/commands/doctor-project-checks.d.ts.map

@@ -1 +1 @@
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