@monoes/monomindcli 2.10.9 → 2.10.13

package/dist/src/mcp-tools/monograph/query-tools.js

@@ -1,22 +1,29 @@
 import { getProjectCwd } from '../types.js';
-import { _isValidDb, applyPprRerank, computeCommitsBehind, getDbPath, preferSymbolHits, STALENESS_THRESHOLD, text, triggerBackgroundBuildIfNeeded, } from './shared.js';
+import { _isValidDb, computeCommitsBehind, expandWithNeighbors, getDbPath, preferSymbolHits, STALENESS_THRESHOLD, text, triggerBackgroundBuildIfNeeded, } from './shared.js';
 // ── monograph_query ───────────────────────────────────────────────────────────
 export const monographQueryTool = {
     name: 'monograph_query',
-    description: 'BM25 keyword search across the code knowledge graph. When MONOGRAPH_EMBEDDINGS=true uses hybrid BM25+vector ranking (RRF). Returns nodes with file path and line number.',
+    description: 'Lexical keyword search across the code knowledge graph. mode=hybrid (default) ranks by ' +
+        'BM25 + LIKE fallback + subsequence fuzzy + node-type bonus; mode=bm25 is BM25 only. ' +
+        'Higher score = better match. Returns nodes with file path and line number.',
     inputSchema: {
         type: 'object',
         properties: {
             query: { type: 'string', description: 'Search terms' },
             limit: { type: 'number', description: 'Max results (default 20)' },
             label: { type: 'string', description: 'Filter by node type: Class, Function, Method, etc.' },
-            rerank: {
+            mode: {
+                type: 'string',
+                enum: ['bm25', 'hybrid'],
+                description: 'Retrieval mode (default: hybrid)',
+            },
+            expandNeighbors: {
                 type: 'boolean',
-                description: 'Apply HippoRAG-style PPR graph reranking to boost neighbors of top hits (default: true)',
+                description: 'Add one hop of outgoing graph neighbors as supporting context, listed separately from direct matches (default: true)',
             },
             damping: {
                 type: 'number',
-                description: 'PPR damping factor when rerank=true (0-1, default 0.5)',
+                description: 'Neighbor-boost factor when expandNeighbors=true — a neighbor inherits this fraction of the hit score (0-1, default 0.5)',
             },
             tokenBudget: {
                 type: 'number',
@@ -29,18 +36,17 @@ export const monographQueryTool = {
         const dbPath = getDbPath();
         if (!_isValidDb(dbPath))
             return text('Monograph index not built yet. Run monograph_build first.');
-        const { openDb, closeDb, ftsSearch } = await import('@monoes/monograph');
-        const { bm25Query } = await import('@monoes/monograph');
+        const { openDb, closeDb, searchGraph } = await import('@monoes/monograph');
         const db = openDb(dbPath);
         try {
-            // Cap limit: passed directly to SQLite queries and bm25Query; an
+            // Cap limit: passed directly to SQLite queries and searchGraph; an
             // unlimited value saturates memory with rows.
             const MAX_QUERY_LIMIT = 1_000;
             const rawLimit = input.limit ?? 20;
             const limit = Number.isFinite(rawLimit) && rawLimit > 0
                 ? Math.min(Math.floor(rawLimit), MAX_QUERY_LIMIT)
                 : 20;
-            // Cap query: passed to FTS5 and bm25Query; very long queries waste
+            // Cap query: passed to FTS5 via searchGraph; very long queries waste
             // parse time and can stress the FTS tokenizer.
             const MAX_MONOGRAPH_QUERY_LEN = 16 * 1024;
             const rawQuery = input.query;
@@ -48,47 +54,68 @@ export const monographQueryTool = {
                 ? rawQuery.slice(0, MAX_MONOGRAPH_QUERY_LEN)
                 : rawQuery;
             const label = input.label;
-            const rerank = input.rerank ?? true;
-            const damping = input.damping ?? 0.5;
+            const mode = input.mode === 'bm25' ? 'bm25' : 'hybrid';
+            const expandNeighbors = input.expandNeighbors ?? true;
+            const damping = input.damping;
             const tokenBudget = input.tokenBudget;
-            // P2-9/P2-10: Post-processing for token budget and reason annotations.
-            // Applied after all search paths below via a shared helper.
-            function annotateAndPrune(results) {
-                const lines = results.map((r) => {
+            // P2-9/P2-10: render results, prune to the token budget, and separate
+            // direct matches from graph-derived supporting context. A node whose
+            // displayed score was raised by a neighbor is never labelled a plain
+            // lexical match — that overstated how well it matched the query.
+            function render(results) {
+                const rendered = results.map((r) => {
                     const loc = r.filePath
                         ? r.startLine != null
                             ? `${r.filePath}:${r.startLine}`
                             : r.filePath
                         : '';
-                    const tag = r.boostedByNeighbors ? ' [PPR-boosted]' : '';
                     // P2-10: Agentic reason field — deterministic template, no LLM call.
-                    const reasonParts = [];
-                    reasonParts.push(`score: ${r.score.toFixed(3)}`);
-                    if (r.boostedByNeighbors)
-                        reasonParts.push('boosted by graph neighbors');
-                    else
-                        reasonParts.push('direct BM25 match');
-                    const reason = `reason: ${reasonParts.join(', ')}`;
-                    return `[${r.label}] ${r.name}  ${loc}  (${reason})${tag}`;
+                    const why = r.isSupportingContext
+                        ? 'reached via graph neighbor'
+                        : r.scoreRaisedByNeighbors
+                            ? `direct ${mode} match, score raised by graph neighbors`
+                            : `direct ${mode} match`;
+                    return {
+                        node: r,
+                        line: `[${r.label}] ${r.name}  ${loc}  (score: ${r.score.toFixed(3)}, ${why})`,
+                    };
                 });
-                // P2-9: Token-budget pruning — ~4 chars per token heuristic.
+                // P2-9: Token-budget pruning — ~4 chars per token heuristic. Prune in
+                // score order (lowest dropped first) before grouping into sections.
+                let kept = rendered;
+                let prunedCount = 0;
                 if (tokenBudget && tokenBudget > 0) {
                     let totalChars = 0;
-                    const pruned = [];
-                    for (const line of lines) {
-                        // already sorted by score desc
-                        const lineChars = line.length + 1; // +1 for newline
+                    const fit = [];
+                    for (const entry of rendered) {
+                        const lineChars = entry.line.length + 1; // +1 for newline
                         if (totalChars + lineChars > tokenBudget * 4)
                             break;
                         totalChars += lineChars;
-                        pruned.push(line);
-                    }
-                    if (pruned.length < lines.length) {
-                        pruned.push(`(${lines.length - pruned.length} more results pruned to fit token budget of ${tokenBudget})`);
+                        fit.push(entry);
                     }
-                    return pruned;
+                    prunedCount = rendered.length - fit.length;
+                    kept = fit;
+                }
+                const direct = kept.filter((e) => !e.node.isSupportingContext);
+                const supporting = kept.filter((e) => e.node.isSupportingContext);
+                const out = [];
+                if (direct.length > 0) {
+                    out.push(`Direct matches (${direct.length}):`);
+                    for (const e of direct)
+                        out.push(`  ${e.line}`);
+                }
+                if (supporting.length > 0) {
+                    if (out.length > 0)
+                        out.push('');
+                    out.push(`Supporting context — graph neighbors, not query matches (${supporting.length}):`);
+                    for (const e of supporting)
+                        out.push(`  ${e.line}`);
                 }
-                return lines;
+                if (prunedCount > 0) {
+                    out.push(`(${prunedCount} more results pruned to fit token budget of ${tokenBudget})`);
+                }
+                return out;
             }
             const zeroResultHint = /\s/.test(query) && !/[A-Z]/.test(query.replace(/\s+/g, '').slice(1))
                 ? ' Hint: monograph indexes identifiers and filenames — try camelCase/PascalCase (e.g. "AgentSpawn") or a filename instead of a phrase.'
@@ -102,59 +129,30 @@ export const monographQueryTool = {
                 const triggered = triggerBackgroundBuildIfNeeded(repoPath, staleness.commitsBehind);
                 stalenessNote = `\n⚠ Index is ${staleness.commitsBehind} commit(s) behind HEAD${triggered ? ' — rebuild triggered' : ''}.`;
             }
-            if (process.env.MONOGRAPH_EMBEDDINGS === 'true') {
-                const results = await bm25Query(db, query, { limit: rerank ? limit * 2 : limit, label });
-                if (results.length === 0)
-                    return text(`No results found.${zeroResultHint}${stalenessNote}`);
-                if (rerank) {
-                    const seeds = results.map((r) => ({
-                        id: r.id,
-                        name: r.name ?? r.id,
-                        label: r.label ?? '?',
-                        filePath: r.filePath ?? '',
-                        startLine: r.startLine ?? null,
-                        score: r.score,
-                    }));
-                    const reranked = applyPprRerank(db, seeds, damping, limit);
-                    const lines = annotateAndPrune(reranked);
-                    return text(lines.join('\n') + stalenessNote);
-                }
-                const lines = annotateAndPrune(results.map((r) => ({
-                    id: r.id,
-                    label: r.label ?? '?',
-                    name: r.name ?? r.id,
-                    filePath: r.filePath ?? '',
-                    startLine: r.startLine ?? null,
-                    score: r.score,
-                    boostedByNeighbors: false,
-                })));
-                return text(lines.join('\n') + stalenessNote);
-            }
-            const results = ftsSearch(db, query, rerank ? limit * 2 : limit, label);
+            // One retrieval path, shared with the package-level monograph_query tool.
+            // searchGraph returns monograph's single score convention (higher is
+            // better, never negative), so nothing here has to know about FTS5 rank.
+            const results = searchGraph(db, query, {
+                limit: expandNeighbors ? limit * 2 : limit,
+                label,
+                mode,
+            });
             if (results.length === 0)
                 return text(`No results found.${zeroResultHint}${stalenessNote}`);
-            if (rerank) {
-                const seeds = results.map((r) => ({
-                    id: r.id,
-                    name: r.name,
-                    label: r.label,
-                    filePath: r.filePath ?? '',
-                    startLine: r.startLine ?? null,
-                    score: Math.abs(r.rank),
-                }));
-                const reranked = applyPprRerank(db, seeds, damping, limit);
-                const lines = annotateAndPrune(reranked);
-                return text(lines.join('\n') + stalenessNote);
-            }
-            const lines = annotateAndPrune(results.map((r) => ({
-                label: r.label,
-                name: r.name,
+            const seeds = results.map((r) => ({
+                id: r.id,
+                name: r.name ?? r.id,
+                label: r.label ?? '?',
                 filePath: r.filePath ?? '',
                 startLine: r.startLine ?? null,
-                score: Math.abs(r.rank),
-                boostedByNeighbors: false,
-            })));
-            return text(lines.join('\n') + stalenessNote);
+                score: r.relevance,
+            }));
+            const ranked = expandNeighbors
+                ? expandWithNeighbors(db, seeds, damping ?? 0.5, limit, { label })
+                : seeds
+                    .slice(0, limit)
+                    .map((s) => ({ ...s, isSupportingContext: false, scoreRaisedByNeighbors: false }));
+            return text(render(ranked).join('\n') + stalenessNote);
         }
         finally {
             closeDb(db);
@@ -197,12 +195,11 @@ export const monographSuggestTool = {
         const dbPath = getDbPath();
         if (!_isValidDb(dbPath))
             return text(`Monograph index not built yet. Run monograph_build first.${stalenessAnnotation}`);
-        const { openDb, closeDb } = await import('@monoes/monograph');
-        const { bm25Query } = await import('@monoes/monograph');
+        const { openDb, closeDb, searchGraph } = await import('@monoes/monograph');
         const db = openDb(dbPath);
         try {
             // Cap limit and task: limit is passed directly to SQL LIMIT clause;
-            // task is forwarded to bm25Query (embedding path) or FTS.
+            // task is forwarded to searchGraph.
             const MAX_SUGGEST_LIMIT = 1_000;
             const MAX_SUGGEST_TASK_LEN = 16 * 1024;
             const rawSuggestLimit = input.limit ?? 10;
@@ -229,15 +226,14 @@ export const monographSuggestTool = {
                 const locHint = srcLoc ? `  [${srcLoc}${tgtLoc ? ` → ${tgtLoc}` : ''}]` : '';
                 return `Why does ${r.src} ${r.relation.toLowerCase()} ${r.tgt}? (${r.confidence})${locHint}`;
             };
-            // When a task is provided, use BM25/FTS5 (via bm25Query) to find
+            // When a task is provided, use the shared retrieval service to find
             // relevant nodes and restrict the edge-level questions to them. This
-            // used to be gated behind MONOGRAPH_EMBEDDINGS=true, but bm25Query
-            // is BM25-only now (the embeddings table stayed empty in practice —
-            // see hybrid-query.ts) so the env var gated nothing and just left this
+            // used to be gated behind MONOGRAPH_EMBEDDINGS=true, which gated
+            // nothing once vector retrieval was removed and just left this
             // better-ranked path off unless a caller happened to know about it.
             let hitIds = [];
             if (task) {
-                const hits = await bm25Query(db, task, { limit: 20 });
+                const hits = searchGraph(db, task, { limit: 20 });
                 const { SYMBOL_NODE_LABELS } = await import('@monoes/monograph');
                 const relevantHits = preferSymbolHits(hits, SYMBOL_NODE_LABELS);
                 hitIds = [...new Set(relevantHits.map((h) => h.id))];
@@ -348,18 +344,26 @@ export const monographContextTool = {
 // ── monograph_neighbors ───────────────────────────────────────────────────────
 export const monographNeighborsTool = {
     name: 'monograph_neighbors',
-    description: 'Show all directly connected nodes for a given symbol — outbound and optionally inbound edges, with relation types.',
+    description: 'Show all directly connected nodes for a given symbol — outbound and optionally inbound edges, with relation types. When a name matches several definitions the candidates are listed instead of one being picked; re-query with nodeId or filePath. Reports the true neighbor total whenever the result is truncated.',
     inputSchema: {
         type: 'object',
         properties: {
             name: { type: 'string', description: 'Symbol name to look up' },
+            nodeId: {
+                type: 'string',
+                description: 'Canonical node id — unambiguous, preferred when known',
+            },
+            filePath: {
+                type: 'string',
+                description: 'Disambiguate a name by file path (exact, or a trailing fragment)',
+            },
             relationFilter: {
                 type: 'string',
                 description: 'Filter by relation type, e.g. IMPORTS, CALLS',
             },
             includeInbound: { type: 'boolean', description: 'Include inbound edges (default: false)' },
+            limit: { type: 'number', description: 'Max neighbors per direction (default 50, max 500)' },
         },
-        required: ['name'],
     },
     handler: async (input) => {
         const { openDb, closeDb, getMonographNeighbors } = await import('@monoes/monograph');
@@ -367,11 +371,22 @@ export const monographNeighborsTool = {
         try {
             const result = getMonographNeighbors(db, {
                 name: input.name,
+                nodeId: input.nodeId,
+                filePath: input.filePath,
                 relationFilter: input.relationFilter,
                 includeInbound: input.includeInbound ?? false,
+                limit: input.limit,
             });
+            const target = (input.nodeId ?? input.name ?? '(no name or nodeId given)');
+            if (result.ambiguous) {
+                // Answering confidently about the wrong definition is worse than asking.
+                return text([
+                    `"${target}" matches ${result.candidates.length} nodes — re-run with nodeId (or filePath) to pick one:`,
+                    ...result.candidates.map((c) => `  nodeId=${c.id}  [${c.label}] ${c.name}  ${c.filePath ?? '(no path)'}${c.startLine != null ? `:${c.startLine}` : ''}`),
+                ].join('\n'));
+            }
             if (!result.node)
-                return text(`No node found with name: ${input.name}`);
+                return text(`No node found with name: ${target}`);
             const nodeFilePath = result.node.filePath ?? '';
             const nodeStartLine = result.node.startLine ?? result.node.start_line;
             const nodeLoc = nodeFilePath
@@ -381,7 +396,9 @@ export const monographNeighborsTool = {
                 : '';
             const lines = [
                 `[${result.node.label}] ${result.node.name}  ${nodeLoc}`,
-                `Neighbors: ${result.neighbors.length}`,
+                result.truncated
+                    ? `Neighbors: ${result.neighbors.length} of ${result.totalNeighbors} (truncated at limit ${result.limit} — raise limit or filter by relation to see the rest)`
+                    : `Neighbors: ${result.neighbors.length} (complete)`,
                 '',
                 ...result.neighbors.map((n) => {
                     const fp = n.node.filePath ?? n.node.file_path ?? '';

package/dist/src/mcp-tools/monograph/query-tools.js.map

@@ -1 +1 @@
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package/dist/src/mcp-tools/monograph/shared.d.ts

@@ -14,7 +14,8 @@ export declare function text(t: string): {
         text: string;
     }[];
 };
-export type PprScoredNode = {
+/** A direct search hit used to seed the expansion. */
+export type SeedNode = {
     id: string;
     name: string;
     label: string;
@@ -22,9 +23,41 @@ export type PprScoredNode = {
     startLine: number | null;
     score: number;
 };
-export declare function applyPprRerank(db: any, seedNodes: PprScoredNode[], damping: number, maxResults: number): Array<PprScoredNode & {
-    boostedByNeighbors: boolean;
-}>;
+/** @deprecated Use {@link SeedNode}. */
+export type PprScoredNode = SeedNode;
+export type ExpandedNode = SeedNode & {
+    /**
+     * True when the node was NOT a direct search hit — it is in the result set
+     * only because a direct hit points at it. Supporting context, not a match.
+     */
+    isSupportingContext: boolean;
+    /**
+     * True when the displayed score is higher than the node's own direct-match
+     * score because a neighbor raised it. A node with this set must not be
+     * reported as a plain lexical match — its rank is not purely its own.
+     */
+    scoreRaisedByNeighbors: boolean;
+};
+/** Hard caps so expansion stays bounded regardless of graph shape. */
+export declare const MAX_EXPANSION_EDGES = 5000;
+export declare const MAX_SUPPORTING_NODES = 200;
+export declare const DEFAULT_EXPANSION_DAMPING = 0.5;
+/**
+ * Coerce a caller-supplied damping factor into [0, 1].
+ * Non-finite input (NaN, Infinity, a non-number from an MCP client) falls back
+ * to the default rather than silently poisoning every propagated score.
+ */
+export declare function normalizeExpansionDamping(damping: unknown): number;
+/**
+ * Expand one outgoing hop from `seedNodes` and merge the neighbors in as
+ * supporting context.
+ *
+ * `options.label`, when set, is reapplied AFTER expansion: a filtered query
+ * must not return an off-label node just because an on-label hit points at it.
+ */
+export declare function expandWithNeighbors(db: any, seedNodes: SeedNode[], damping: number, maxResults: number, options?: {
+    label?: string;
+}): ExpandedNode[];
 /**
  * Compute how many commits the index is behind HEAD.
  * Returns { commitsBehind, lastCommit } — or null if the index has never been

package/dist/src/mcp-tools/monograph/shared.d.ts.map

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