@monoes/monomindcli 1.19.0 → 2.0.1

package/dist/src/commands/neural-optimize.js

@@ -11,8 +11,8 @@ export const optimizeCommand = {
         { name: 'verbose', short: 'v', type: 'boolean', description: 'Show detailed metrics' },
     ],
     examples: [
-        { command: 'monomind neural optimize --method quantize', description: 'Quantize patterns to Int8' },
-        { command: 'monomind neural optimize --method analyze -v', description: 'Analyze memory usage' },
+        { command: 'monomind hooks intelligence optimize --method quantize', description: 'Quantize patterns to Int8' },
+        { command: 'monomind hooks intelligence optimize --method analyze -v', description: 'Analyze memory usage' },
     ],
     action: async (ctx) => {
         const method = ctx.flags.method || 'quantize';
@@ -54,9 +54,8 @@ export const optimizeCommand = {
                     return { ...p, embedding: int8Embedding, _quantized: true, _scale: scale };
                 });
                 const patternFile = path.join(patternDir, 'patterns.json');
-                const tmpFile = `${patternFile}.${process.pid}.tmp`;
-                fs.writeFileSync(tmpFile, JSON.stringify(quantizedPatterns, null, 2), 'utf-8');
-                fs.renameSync(tmpFile, patternFile);
+                const { writeJsonFileAtomic } = await import('../utils/json-file.js');
+                writeJsonFileAtomic(patternFile, quantizedPatterns);
                 spinner.succeed(`Quantized ${quantized} patterns`);
                 output.writeln();
                 output.printTable({
@@ -148,8 +147,8 @@ export const exportCommand = {
         { name: 'name', short: 'n', type: 'string', description: 'Custom name for exported model' },
     ],
     examples: [
-        { command: 'monomind neural export -m security-patterns --ipfs', description: 'Export and pin to IPFS' },
-        { command: 'monomind neural export -m code-review -o ./export.json', description: 'Export to file' },
+        { command: 'monomind hooks intelligence export -m security-patterns --ipfs', description: 'Export and pin to IPFS' },
+        { command: 'monomind hooks intelligence export -m code-review -o ./export.json', description: 'Export to file' },
     ],
     action: async (ctx) => {
         const modelId = ctx.flags.model || 'all';
@@ -267,9 +266,8 @@ export const exportCommand = {
                     spinner.fail(`--output path escapes project directory: ${outputFile}`);
                     return { success: false, exitCode: 1 };
                 }
-                const tmpOutput = outputFile + '.tmp';
-                fs.writeFileSync(tmpOutput, JSON.stringify(exportPackage, null, 2));
-                fs.renameSync(tmpOutput, outputFile);
+                const { writeJsonFileAtomic } = await import('../utils/json-file.js');
+                writeJsonFileAtomic(resolvedOut, exportPackage);
                 spinner.succeed(`Exported to: ${outputFile}`);
             }
             if (pinToIpfs) {
@@ -314,7 +312,7 @@ export const exportCommand = {
                 });
                 output.writeln();
                 output.writeln(output.success('Share this CID for others to import your trained patterns'));
-                output.writeln(output.dim(`Import command: monomind neural import --cid ${result.IpfsHash}`));
+                output.writeln(output.dim(`Import command: monomind hooks intelligence import --cid ${result.IpfsHash}`));
             }
             if (!outputFile && !pinToIpfs) {
                 spinner.succeed('Export prepared');

package/dist/src/commands/neural-optimize.js.map

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package/dist/src/commands/neural-registry.js

@@ -12,9 +12,9 @@ export const listCommand = {
         { name: 'cid', type: 'string', description: 'Custom registry CID (default: official registry)' },
     ],
     examples: [
-        { command: 'monomind neural list', description: 'List all available models' },
-        { command: 'monomind neural list --category security', description: 'List only security models' },
-        { command: 'monomind neural list -f json', description: 'Output as JSON' },
+        { command: 'monomind hooks intelligence list', description: 'List all available models' },
+        { command: 'monomind hooks intelligence list --category security', description: 'List only security models' },
+        { command: 'monomind hooks intelligence list -f json', description: 'Output as JSON' },
     ],
     action: async (ctx) => {
         const category = ctx.flags.category;
@@ -96,12 +96,12 @@ export const listCommand = {
                 output.writeln(output.dim('Registry CID: ' + registryCid));
                 output.writeln();
                 output.writeln(output.bold('Import Commands:'));
-                output.writeln(output.dim('  All models:      ') + `monomind neural import --cid ${registryCid}`);
+                output.writeln(output.dim('  All models:      ') + `monomind hooks intelligence import --cid ${registryCid}`);
                 if (category) {
-                    output.writeln(output.dim(`  ${category} only: `) + `monomind neural import --cid ${registryCid} --category ${category}`);
+                    output.writeln(output.dim(`  ${category} only: `) + `monomind hooks intelligence import --cid ${registryCid} --category ${category}`);
                 }
                 else {
-                    output.writeln(output.dim('  By category:     ') + `monomind neural import --cid ${registryCid} --category <category>`);
+                    output.writeln(output.dim('  By category:     ') + `monomind hooks intelligence import --cid ${registryCid} --category <category>`);
                 }
             }
             return { success: true };
@@ -124,9 +124,9 @@ export const importCommand = {
         { name: 'category', type: 'string', description: 'Only import patterns from specific category' },
     ],
     examples: [
-        { command: 'monomind neural import --cid QmXxx...', description: 'Import from IPFS' },
-        { command: 'monomind neural import -f ./patterns.json --verify', description: 'Import from file' },
-        { command: 'monomind neural import --cid QmNr1yYMK... --category security', description: 'Import only security patterns' },
+        { command: 'monomind hooks intelligence import --cid QmXxx...', description: 'Import from IPFS' },
+        { command: 'monomind hooks intelligence import -f ./patterns.json --verify', description: 'Import from file' },
+        { command: 'monomind hooks intelligence import --cid QmNr1yYMK... --category security', description: 'Import only security patterns' },
     ],
     action: async (ctx) => {
         const cid = ctx.flags.cid;
@@ -278,7 +278,7 @@ export const importCommand = {
             });
             output.writeln();
             output.writeln(output.success('Patterns imported and ready to use'));
-            output.writeln(output.dim('Run "monomind neural patterns --action list" to see imported patterns'));
+            output.writeln(output.dim('Run "monomind hooks intelligence patterns --action list" to see imported patterns'));
             return { success: true };
         }
         catch (error) {

package/dist/src/commands/neural-registry.js.map

@@ -1 +1 @@
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package/dist/src/commands/providers.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"providers.d.ts","sourceRoot":"","sources":["../../../src/commands/providers.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AA0P1E,eAAO,MAAM,gBAAgB,EAAE,OAsB9B,CAAC;AAEF,eAAe,gBAAgB,CAAC"}
+{"version":3,"file":"providers.d.ts","sourceRoot":"","sources":["../../../src/commands/providers.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAwV1E,eAAO,MAAM,gBAAgB,EAAE,OA0B9B,CAAC;AAEF,eAAe,gBAAgB,CAAC"}

package/dist/src/commands/providers.js

@@ -234,13 +234,100 @@ const testCommand = {
         }
     },
 };
+// List subcommand
+const listCommand = {
+    name: 'list',
+    description: 'List configured providers',
+    options: [
+        { name: 'json', short: 'j', type: 'boolean', description: 'Output as JSON' },
+    ],
+    examples: [
+        { command: 'monomind providers list', description: 'List all configured providers' },
+    ],
+    action: async (ctx) => {
+        try {
+            const cwd = process.cwd();
+            const config = configManager.getConfig(cwd);
+            const agents = (config.agents ?? {});
+            const providers = (agents.providers ?? []);
+            if (ctx.flags.json) {
+                const redacted = providers.map((p) => ({
+                    ...p,
+                    apiKey: p.apiKey ? '***configured***' : undefined,
+                }));
+                output.printJson(redacted);
+                return { success: true, data: redacted };
+            }
+            output.writeln();
+            output.writeln(output.bold('Configured Providers'));
+            output.writeln(output.dim('─'.repeat(40)));
+            if (providers.length === 0) {
+                output.writeln(output.dim('  No providers configured. Use "providers configure -p <name>" to add one.'));
+            }
+            else {
+                for (const p of providers) {
+                    const name = String(p.name ?? 'unknown');
+                    const hasKey = p.apiKey ? 'key set' : 'no key';
+                    const model = p.model ? `, model: ${p.model}` : '';
+                    output.writeln(`  ${output.highlight(name)} — ${hasKey}${model}`);
+                }
+            }
+            output.writeln();
+            return { success: true, data: providers };
+        }
+        catch (error) {
+            const msg = error instanceof Error ? error.message : String(error);
+            output.printError(`Failed to list providers: ${msg}`);
+            return { success: false, exitCode: 1 };
+        }
+    },
+};
+// Remove subcommand
+const removeCommand = {
+    name: 'remove',
+    description: 'Remove a configured provider',
+    options: [
+        { name: 'provider', short: 'p', type: 'string', description: 'Provider name', required: true },
+    ],
+    examples: [
+        { command: 'monomind providers remove -p openai', description: 'Remove OpenAI provider config' },
+    ],
+    action: async (ctx) => {
+        try {
+            const provider = (ctx.flags.provider || (ctx.args && ctx.args[0]) || '').slice(0, 64);
+            if (!provider) {
+                output.printError('Provider name is required. Use -p <name> or pass as first argument.');
+                return { success: false, exitCode: 1 };
+            }
+            const cwd = process.cwd();
+            const config = configManager.getConfig(cwd);
+            const agents = (config.agents ?? {});
+            const providers = (agents.providers ?? []);
+            const filtered = providers.filter((p) => !(typeof p.name === 'string' && p.name.toLowerCase() === provider.toLowerCase()));
+            if (filtered.length === providers.length) {
+                output.printWarning(`Provider "${provider}" was not configured.`);
+                return { success: true };
+            }
+            configManager.set(cwd, 'agents.providers', filtered);
+            output.writeln(output.success(`Provider "${provider}" removed.`));
+            return { success: true };
+        }
+        catch (error) {
+            const msg = error instanceof Error ? error.message : String(error);
+            output.printError(`Failed to remove provider: ${msg}`);
+            return { success: false, exitCode: 1 };
+        }
+    },
+};
 // Main providers command
 export const providersCommand = {
     name: 'providers',
     description: 'Manage AI providers, models, and configurations',
-    subcommands: [configureCommand, testCommand],
+    subcommands: [listCommand, configureCommand, removeCommand, testCommand],
     examples: [
+        { command: 'monomind providers list', description: 'List configured providers' },
         { command: 'monomind providers configure -p openai -k sk-...', description: 'Configure OpenAI' },
+        { command: 'monomind providers remove -p openai', description: 'Remove OpenAI config' },
         { command: 'monomind providers test --all', description: 'Test all providers' },
     ],
     action: async () => {
@@ -250,7 +337,9 @@ export const providersCommand = {
         output.writeln();
         output.writeln('Subcommands:');
         output.printList([
+            'list      - List configured providers',
             'configure - Configure provider settings and API keys',
+            'remove    - Remove a configured provider',
             'test      - Test provider connectivity',
         ]);
         output.writeln();

package/dist/src/commands/providers.js.map

@@ -1 +1 @@
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package/dist/src/commands/search-universal.d.ts

@@ -5,9 +5,15 @@
  * renders merged, score-ranked results grouped by content type.
  */
 import type { Command } from '../types.js';
-import type { SearchResult, CapabilityName } from '../capabilities/types.js';
+import type { SearchResult, CapabilityName, DirectoryScan } from '../capabilities/types.js';
 export declare function groupByType(results: SearchResult[]): Partial<Record<CapabilityName, SearchResult[]>>;
 export declare function formatSearchResults(results: SearchResult[]): string;
+/**
+ * Scan the working directory for content-type capabilities and persist an
+ * updated fingerprint to .monomind/. Shared by `search scan` and the
+ * auto-rescan path in `search` (formerly the standalone `scan` command).
+ */
+export declare function runCapabilityScan(cwd: string): Promise<DirectoryScan>;
 export declare const searchUniversalCommand: Command;
 export default searchUniversalCommand;
 //# sourceMappingURL=search-universal.d.ts.map

package/dist/src/commands/search-universal.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"search-universal.d.ts","sourceRoot":"","sources":["../../../src/commands/search-universal.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAC1E,OAAO,KAAK,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AA6B7E,wBAAgB,WAAW,CAAC,OAAO,EAAE,YAAY,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,cAAc,EAAE,YAAY,EAAE,CAAC,CAAC,CAOpG;AAED,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,YAAY,EAAE,GAAG,MAAM,CAgBnE;AAED,eAAO,MAAM,sBAAsB,EAAE,OAqDpC,CAAC;AAEF,eAAe,sBAAsB,CAAC"}
+{"version":3,"file":"search-universal.d.ts","sourceRoot":"","sources":["../../../src/commands/search-universal.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAC1E,OAAO,KAAK,EAAE,YAAY,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,0BAA0B,CAAC;AA6B5F,wBAAgB,WAAW,CAAC,OAAO,EAAE,YAAY,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,cAAc,EAAE,YAAY,EAAE,CAAC,CAAC,CAOpG;AAED,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,YAAY,EAAE,GAAG,MAAM,CAgBnE;AAKD;;;;GAIG;AACH,wBAAsB,iBAAiB,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,aAAa,CAAC,CAK3E;AAoCD,eAAO,MAAM,sBAAsB,EAAE,OAgEpC,CAAC;AAEF,eAAe,sBAAsB,CAAC"}

package/dist/src/commands/search-universal.js

@@ -1,5 +1,5 @@
 import { CapabilityManager } from '../capabilities/manager.js';
-import { loadFingerprint, listFiles } from '../capabilities/scanner.js';
+import { loadFingerprint, listFiles, scanDirectory, saveFingerprint } from '../capabilities/scanner.js';
 import { codeCapability } from '../capabilities/cap-code.js';
 import { documentsCapability } from '../capabilities/cap-documents.js';
 import { mediaCapability } from '../capabilities/cap-media.js';
@@ -47,23 +47,77 @@ export function formatSearchResults(results) {
     }
     return lines.join('\n');
 }
+/** Fingerprints older than this are considered stale and trigger a rescan. */
+const FINGERPRINT_MAX_AGE_MS = 24 * 60 * 60 * 1000;
+/**
+ * Scan the working directory for content-type capabilities and persist an
+ * updated fingerprint to .monomind/. Shared by `search scan` and the
+ * auto-rescan path in `search` (formerly the standalone `scan` command).
+ */
+export async function runCapabilityScan(cwd) {
+    const scan = await scanDirectory(cwd);
+    const monomindDir = path.join(cwd, '.monomind');
+    await saveFingerprint(scan, monomindDir);
+    return scan;
+}
+function isFingerprintStale(scannedAt) {
+    const ts = new Date(scannedAt).getTime();
+    return isNaN(ts) || Date.now() - ts > FINGERPRINT_MAX_AGE_MS;
+}
+const scanSubcommand = {
+    name: 'scan',
+    description: 'Scan directory and update capability fingerprint',
+    action: async (ctx) => {
+        try {
+            const scan = await runCapabilityScan(ctx.cwd);
+            console.log(`\nScanned ${scan.totalFiles} files in ${scan.root}`);
+            console.log(`Git: ${scan.git ? 'yes' : 'no'}`);
+            console.log(`\nCapabilities detected:`);
+            for (const [name, score] of Object.entries(scan.capabilities)) {
+                if (score.confidence > 0.1) {
+                    console.log(`  ✓ ${name} (${(score.confidence * 100).toFixed(0)}% confidence, ${score.files} files)`);
+                }
+            }
+            const inactive = Object.entries(scan.capabilities).filter(([, s]) => s.confidence <= 0.1);
+            if (inactive.length > 0) {
+                console.log(`\nNot detected: ${inactive.map(([n]) => n).join(', ')}`);
+            }
+            return { success: true };
+        }
+        catch (error) {
+            return { success: false, message: error instanceof Error ? error.message : String(error) };
+        }
+    },
+};
 export const searchUniversalCommand = {
     name: 'search',
     description: 'Search across all content types',
+    subcommands: [scanSubcommand],
     options: [
         { name: 'limit', description: 'Max results', type: 'number' },
         { name: 'type', description: 'Filter by type (documents, media, data, code)', type: 'string' },
     ],
+    examples: [
+        { command: 'monomind search "auth middleware"', description: 'Search all content types' },
+        { command: 'monomind search scan', description: 'Rescan directory and update capability fingerprint' },
+    ],
     action: async (ctx) => {
         const query = ctx.args.join(' ');
         if (!query) {
             return { success: false, message: 'Usage: monomind search <query>' };
         }
         const monomindDir = path.join(ctx.cwd, '.monomind');
-        const fingerprint = await loadFingerprint(monomindDir);
-        if (!fingerprint) {
-            console.log('No directory scan found. Run `monomind init` or `monomind scan` first.');
-            return { success: true };
+        let fingerprint = await loadFingerprint(monomindDir);
+        // Auto-scan when the fingerprint is missing or stale instead of bailing out
+        if (!fingerprint || isFingerprintStale(fingerprint.scannedAt)) {
+            console.log(fingerprint ? 'Capability fingerprint is stale — rescanning...' : 'No directory scan found — scanning...');
+            try {
+                const scan = await runCapabilityScan(ctx.cwd);
+                fingerprint = { version: 1, ...scan };
+            }
+            catch (err) {
+                return { success: false, message: `Scan failed: ${err instanceof Error ? err.message : String(err)}` };
+            }
         }
         const mgr = new CapabilityManager();
         mgr.register(codeCapability);

package/dist/src/commands/search-universal.js.map

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package/dist/src/commands/security-cve.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"security-cve.d.ts","sourceRoot":"","sources":["../../../src/commands/security-cve.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAyD1E,eAAO,MAAM,UAAU,EAAE,OA0RxB,CAAC"}
+{"version":3,"file":"security-cve.d.ts","sourceRoot":"","sources":["../../../src/commands/security-cve.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAuD1E,eAAO,MAAM,UAAU,EAAE,OA0RxB,CAAC"}

package/dist/src/commands/security-cve.js

@@ -2,11 +2,12 @@
  * Security CVE command — NVD/OSV lookups and npm audit vulnerability listing
  */
 import { output } from '../output.js';
-import { statSync, readFileSync, mkdirSync, writeFileSync, renameSync } from 'fs';
+import { statSync, readFileSync } from 'fs';
 import { join } from 'path';
 import { execFile } from 'child_process';
 import { promisify } from 'util';
 import * as https from 'https';
+import { writeJsonFileAtomic } from '../utils/json-file.js';
 // ─── CVE helpers ─────────────────────────────────────────────────────────────
 const CACHE_TTL_MS = 24 * 60 * 60 * 1000;
 function getCveCache(cveId, cacheDir) {
@@ -25,11 +26,8 @@ const CVE_ID_RE = /^CVE-\d{4}-\d{4,}$/i;
 function saveCveCache(cveId, cacheDir, data) {
     if (!CVE_ID_RE.test(cveId))
         throw new Error('Invalid CVE ID');
-    mkdirSync(cacheDir, { recursive: true });
     const dest = join(cacheDir, `${cveId.toUpperCase()}.json`);
-    const tmp = dest + '.tmp';
-    writeFileSync(tmp, JSON.stringify(data));
-    renameSync(tmp, dest);
+    writeJsonFileAtomic(dest, data, false);
 }
 function httpsGet(url, timeoutMs = 10_000) {
     return new Promise((resolve, reject) => {