@monoes/monomindcli 1.15.4 → 1.15.6

package/dist/src/mcp-client.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"mcp-client.d.ts","sourceRoot":"","sources":["../../src/mcp-client.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,sBAAsB,CAAC;AA2GpD;;GAEG;AACH,qBAAa,cAAe,SAAQ,KAAK;IAG9B,QAAQ,EAAE,MAAM;IAChB,KAAK,CAAC,EAAE,KAAK;gBAFpB,OAAO,EAAE,MAAM,EACR,QAAQ,EAAE,MAAM,EAChB,KAAK,CAAC,EAAE,KAAK,YAAA;CAKvB;AAED;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAsB,WAAW,CAAC,CAAC,GAAG,OAAO,EAC3C,QAAQ,EAAE,MAAM,EAChB,KAAK,GAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAM,EACnC,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAChC,OAAO,CAAC,CAAC,CAAC,CAuBZ;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC,OAAO,EAAE,SAAS,CAAC,GAAG,SAAS,CAkBtF;AAED;;;;;GAKG;AACH,wBAAgB,YAAY,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,SAAS,CAAC,CAAC,CAiB/E;AAED;;;GAGG;AACH,wBAAgB,cAAc,IAAI,OAAO,EAAE,CAE1C;AAED;;;;;GAKG;AACH,wBAAgB,OAAO,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAEjD;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,IAAI,MAAM,EAAE,CAU5C;AAED;;;;;;GAMG;AACH,wBAAgB,iBAAiB,CAC/B,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAC7B;IAAE,KAAK,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,EAAE,CAAA;CAAE,CA0BvC;;;;;;;;;;AAED,wBAQE"}

package/dist/src/mcp-client.js

@@ -43,6 +43,9 @@ import { monographTools } from './mcp-tools/monograph-tools.js';
 import { coverageRouterTools } from './monovector/coverage-tools.js';
 // A2A Agent Card protocol (source: https://a2a-protocol.org)
 import { a2aTools } from './mcp-tools/a2a-tools.js';
+// Quality and Coherence core tools
+import { qualityTools } from './mcp-tools/quality-tools.js';
+import { coherenceTools } from './mcp-tools/coherence-tools.js';
 /**
  * MCP Tool Registry
  * Maps tool names to their handler functions
@@ -100,6 +103,10 @@ registerTools([
     ...coverageRouterTools,
     // A2A Agent Card protocol (source: https://a2a-protocol.org)
     ...a2aTools,
+    // Quality tools
+    ...qualityTools,
+    // Coherence tools
+    ...coherenceTools,
 ]);
 /**
  * MCP Client Error

package/dist/src/mcp-client.js.map

@@ -1 +1 @@
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package/dist/src/mcp-tools/coherence/causal-infer.d.ts

@@ -0,0 +1,15 @@
+/**
+ * Causal Inference Tool - pr_causal_infer
+ *
+ * Performs causal inference using do-calculus.
+ * Estimates causal effects, identifies confounders, and finds backdoor paths.
+ *
+ * Uses CausalEngine from prime-radiant-advanced-wasm
+ */
+import type { MCPTool } from './types.js';
+/**
+ * pr_causal_infer MCP Tool Definition
+ */
+export declare const causalInferTool: MCPTool;
+export default causalInferTool;
+//# sourceMappingURL=causal-infer.d.ts.map

package/dist/src/mcp-tools/coherence/causal-infer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"causal-infer.d.ts","sourceRoot":"","sources":["../../../../src/mcp-tools/coherence/causal-infer.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EACV,OAAO,EAKR,MAAM,YAAY,CAAC;AAiYpB;;GAEG;AACH,eAAO,MAAM,eAAe,EAAE,OA6C7B,CAAC;AAEF,eAAe,eAAe,CAAC"}

package/dist/src/mcp-tools/coherence/causal-infer.js

@@ -0,0 +1,347 @@
+/**
+ * Causal Inference Tool - pr_causal_infer
+ *
+ * Performs causal inference using do-calculus.
+ * Estimates causal effects, identifies confounders, and finds backdoor paths.
+ *
+ * Uses CausalEngine from prime-radiant-advanced-wasm
+ */
+import { CausalInputSchema, successResult, errorResult, } from './types.js';
+// Default logger
+const defaultLogger = {
+    debug: (msg, meta) => console.debug(`[pr_causal_infer] ${msg}`, meta),
+    info: (msg, meta) => console.info(`[pr_causal_infer] ${msg}`, meta),
+    warn: (msg, meta) => console.warn(`[pr_causal_infer] ${msg}`, meta),
+    error: (msg, meta) => console.error(`[pr_causal_infer] ${msg}`, meta),
+};
+function buildGraphStructure(graph) {
+    const nodes = new Map();
+    // Initialize nodes
+    for (const nodeId of graph.nodes) {
+        nodes.set(nodeId, {
+            id: nodeId,
+            parents: new Set(),
+            children: new Set(),
+        });
+    }
+    // Add edges
+    for (const [from, to] of graph.edges) {
+        const fromNode = nodes.get(from);
+        const toNode = nodes.get(to);
+        if (fromNode && toNode) {
+            fromNode.children.add(to);
+            toNode.parents.add(from);
+        }
+    }
+    return nodes;
+}
+/**
+ * Find all ancestors of a node (including the node itself)
+ */
+function findAncestors(nodeId, graph) {
+    const ancestors = new Set();
+    const queue = [nodeId];
+    while (queue.length > 0) {
+        const current = queue.shift();
+        if (ancestors.has(current))
+            continue;
+        ancestors.add(current);
+        const node = graph.get(current);
+        if (node) {
+            for (const parent of node.parents) {
+                queue.push(parent);
+            }
+        }
+    }
+    return ancestors;
+}
+/**
+ * Find all descendants of a node (including the node itself)
+ */
+function findDescendants(nodeId, graph) {
+    const descendants = new Set();
+    const queue = [nodeId];
+    while (queue.length > 0) {
+        const current = queue.shift();
+        if (descendants.has(current))
+            continue;
+        descendants.add(current);
+        const node = graph.get(current);
+        if (node) {
+            for (const child of node.children) {
+                queue.push(child);
+            }
+        }
+    }
+    return descendants;
+}
+/**
+ * Identify confounders (common causes of treatment and outcome)
+ */
+function identifyConfounders(treatment, outcome, graph) {
+    const treatmentAncestors = findAncestors(treatment, graph);
+    const outcomeAncestors = findAncestors(outcome, graph);
+    // Confounders are ancestors of both treatment and outcome
+    // that are not the treatment itself
+    const confounders = [];
+    for (const ancestor of treatmentAncestors) {
+        if (ancestor !== treatment && ancestor !== outcome && outcomeAncestors.has(ancestor)) {
+            confounders.push(ancestor);
+        }
+    }
+    return confounders;
+}
+/**
+ * Find backdoor paths from treatment to outcome
+ * A backdoor path is a path that goes into the treatment node
+ */
+function findBackdoorPaths(treatment, outcome, graph, maxPaths = 10) {
+    const backdoorPaths = [];
+    const treatmentNode = graph.get(treatment);
+    if (!treatmentNode)
+        return [];
+    // Start from each parent of treatment (backdoor)
+    for (const parent of treatmentNode.parents) {
+        const paths = findAllPaths(parent, outcome, graph, new Set([treatment]), maxPaths - backdoorPaths.length);
+        for (const path of paths) {
+            backdoorPaths.push([treatment, ...path]);
+            if (backdoorPaths.length >= maxPaths)
+                break;
+        }
+        if (backdoorPaths.length >= maxPaths)
+            break;
+    }
+    return backdoorPaths;
+}
+/**
+ * Find all paths from source to target (BFS with path tracking)
+ */
+function findAllPaths(source, target, graph, exclude, maxPaths) {
+    const paths = [];
+    const queue = [{ node: source, path: [source] }];
+    while (queue.length > 0 && paths.length < maxPaths) {
+        const { node, path } = queue.shift();
+        if (node === target) {
+            paths.push(path);
+            continue;
+        }
+        const currentNode = graph.get(node);
+        if (!currentNode)
+            continue;
+        // Consider both parents and children for undirected path finding
+        const neighbors = new Set([...currentNode.parents, ...currentNode.children]);
+        for (const neighbor of neighbors) {
+            if (!path.includes(neighbor) && !exclude.has(neighbor)) {
+                queue.push({
+                    node: neighbor,
+                    path: [...path, neighbor],
+                });
+            }
+        }
+    }
+    return paths;
+}
+/**
+ * Check if intervention is valid (treatment must exist and have outgoing edges)
+ */
+function validateIntervention(treatment, outcome, graph) {
+    const treatmentNode = graph.get(treatment);
+    const outcomeNode = graph.get(outcome);
+    if (!treatmentNode || !outcomeNode) {
+        return false;
+    }
+    // Check if there's any path from treatment to outcome
+    const descendants = findDescendants(treatment, graph);
+    return descendants.has(outcome);
+}
+/**
+ * Estimate causal effect using backdoor adjustment
+ * This is a simplified estimation - real estimation requires data
+ */
+function estimateCausalEffect(treatment, outcome, confounders, backdoorPaths, graph) {
+    // Effect estimation heuristic based on graph structure
+    // In practice, this requires observational data
+    // Base effect: based on direct path existence
+    const treatmentNode = graph.get(treatment);
+    let baseEffect = treatmentNode?.children.has(outcome) ? 0.5 : 0.3;
+    // Adjust for confounders (more confounders = less identifiable effect)
+    const confounderPenalty = Math.min(confounders.length * 0.1, 0.3);
+    // Adjust for backdoor paths (more unblocked paths = less reliable)
+    const pathPenalty = Math.min(backdoorPaths.length * 0.05, 0.2);
+    const effect = Math.max(0, baseEffect - confounderPenalty - pathPenalty);
+    // Confidence decreases with confounders and backdoor paths
+    const confidence = Math.max(0.1, 1 - confounderPenalty - pathPenalty);
+    return { effect, confidence };
+}
+/**
+ * Get interpretation of causal analysis results
+ */
+function getInterpretation(interventionValid, confounders, backdoorPaths, confidence) {
+    if (!interventionValid) {
+        return 'Intervention is not valid - no causal path exists from treatment to outcome';
+    }
+    if (confounders.length === 0 && backdoorPaths.length === 0) {
+        return 'Clean causal identification - no confounding detected';
+    }
+    if (confidence > 0.8) {
+        return 'Strong causal identification - confounders can be adjusted for';
+    }
+    if (confidence > 0.5) {
+        return `Moderate causal identification - ${confounders.length} confounder(s) require adjustment`;
+    }
+    return `Weak causal identification - multiple confounders (${confounders.length}) and backdoor paths (${backdoorPaths.length}) detected`;
+}
+/**
+ * Handler for pr_causal_infer tool
+ */
+async function handler(input, context) {
+    const logger = context?.logger ?? defaultLogger;
+    const startTime = performance.now();
+    try {
+        // Validate input
+        const validationResult = CausalInputSchema.safeParse(input);
+        if (!validationResult.success) {
+            logger.error('Input validation failed', { error: validationResult.error.message });
+            return errorResult(`Invalid input: ${validationResult.error.message}`);
+        }
+        const { graph, intervention, outcome } = validationResult.data;
+        logger.debug('Processing causal inference', {
+            nodes: graph.nodes.length,
+            edges: graph.edges.length,
+            intervention,
+            outcome,
+        });
+        // Validate nodes exist
+        if (!graph.nodes.includes(intervention)) {
+            return errorResult(`Intervention variable "${intervention}" not found in graph nodes`);
+        }
+        if (!graph.nodes.includes(outcome)) {
+            return errorResult(`Outcome variable "${outcome}" not found in graph nodes`);
+        }
+        const maxBackdoorPaths = context?.config?.causal?.maxBackdoorPaths ?? 10;
+        // Note: confidenceThreshold can be used for filtering in future enhancements
+        void (context?.config?.causal?.confidenceThreshold ?? 0.8);
+        let effect;
+        let confidence;
+        let confounders;
+        let backdoorPaths;
+        let interventionValid;
+        // Try to use WASM bridge if available
+        if (context?.bridge?.initialized) {
+            try {
+                logger.debug('Using WASM bridge for causal inference');
+                const result = await context.bridge.inferCausal(graph, intervention, outcome);
+                effect = result.effect;
+                confidence = result.confidence;
+                confounders = result.confounders;
+                backdoorPaths = result.backdoorPaths;
+                interventionValid = result.interventionValid;
+            }
+            catch (wasmError) {
+                logger.warn('WASM bridge failed, falling back to JS implementation', {
+                    error: wasmError instanceof Error ? wasmError.message : String(wasmError),
+                });
+                // Use JavaScript implementation
+                const graphStructure = buildGraphStructure(graph);
+                interventionValid = validateIntervention(intervention, outcome, graphStructure);
+                confounders = identifyConfounders(intervention, outcome, graphStructure);
+                backdoorPaths = findBackdoorPaths(intervention, outcome, graphStructure, maxBackdoorPaths);
+                const estimation = estimateCausalEffect(intervention, outcome, confounders, backdoorPaths, graphStructure);
+                effect = estimation.effect;
+                confidence = estimation.confidence;
+            }
+        }
+        else {
+            // Pure JavaScript fallback
+            logger.debug('Using JavaScript fallback for causal inference');
+            const graphStructure = buildGraphStructure(graph);
+            interventionValid = validateIntervention(intervention, outcome, graphStructure);
+            confounders = identifyConfounders(intervention, outcome, graphStructure);
+            backdoorPaths = findBackdoorPaths(intervention, outcome, graphStructure, maxBackdoorPaths);
+            const estimation = estimateCausalEffect(intervention, outcome, confounders, backdoorPaths, graphStructure);
+            effect = estimation.effect;
+            confidence = estimation.confidence;
+        }
+        const output = {
+            effect,
+            confidence,
+            backdoorPaths: backdoorPaths.map(p => p.join(' -> ')),
+            details: {
+                confounders,
+                interventionValid,
+                interpretation: getInterpretation(interventionValid, confounders, backdoorPaths, confidence),
+                nodeCount: graph.nodes.length,
+                edgeCount: graph.edges.length,
+            },
+        };
+        const duration = performance.now() - startTime;
+        logger.info('Causal inference completed', {
+            effect: effect.toFixed(4),
+            confidence: confidence.toFixed(4),
+            confounders: confounders.length,
+            backdoorPaths: backdoorPaths.length,
+            interventionValid,
+            durationMs: duration.toFixed(2),
+        });
+        return successResult(output);
+    }
+    catch (error) {
+        const duration = performance.now() - startTime;
+        logger.error('Causal inference failed', {
+            error: error instanceof Error ? error.message : String(error),
+            durationMs: duration.toFixed(2),
+        });
+        return errorResult(error instanceof Error ? error : new Error(String(error)));
+    }
+}
+/**
+ * pr_causal_infer MCP Tool Definition
+ */
+export const causalInferTool = {
+    name: 'pr_causal_infer',
+    description: 'Perform causal inference using do-calculus. Estimates causal effects, identifies confounders, and finds backdoor paths. Uses CausalEngine for mathematical causal analysis.',
+    category: 'causal',
+    version: '0.1.3',
+    tags: ['causal', 'do-calculus', 'confounders', 'backdoor-paths', 'ai-interpretability'],
+    cacheable: true,
+    cacheTTL: 60000,
+    inputSchema: {
+        type: 'object',
+        properties: {
+            graph: {
+                type: 'object',
+                properties: {
+                    nodes: {
+                        type: 'array',
+                        items: { type: 'string' },
+                        description: 'List of variable names',
+                    },
+                    edges: {
+                        type: 'array',
+                        items: {
+                            type: 'array',
+                            items: { type: 'string' },
+                            minItems: 2,
+                            maxItems: 2,
+                        },
+                        description: 'Directed edges as [from, to] pairs',
+                    },
+                },
+                required: ['nodes', 'edges'],
+                description: 'Causal graph with nodes and directed edges',
+            },
+            intervention: {
+                type: 'string',
+                description: 'Treatment/intervention variable',
+            },
+            outcome: {
+                type: 'string',
+                description: 'Outcome variable to measure effect on',
+            },
+        },
+        required: ['graph', 'intervention', 'outcome'],
+    },
+    handler,
+};
+export default causalInferTool;
+//# sourceMappingURL=causal-infer.js.map

package/dist/src/mcp-tools/coherence/causal-infer.js.map

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package/dist/src/mcp-tools/coherence/coherence-check.d.ts

@@ -0,0 +1,15 @@
+/**
+ * Coherence Check Tool - pr_coherence_check
+ *
+ * Checks coherence of vectors using Sheaf Laplacian energy.
+ * Energy 0 = fully coherent, Energy 1 = contradictory
+ *
+ * Uses CohomologyEngine from prime-radiant-advanced-wasm
+ */
+import type { MCPTool } from './types.js';
+/**
+ * pr_coherence_check MCP Tool Definition
+ */
+export declare const coherenceCheckTool: MCPTool;
+export default coherenceCheckTool;
+//# sourceMappingURL=coherence-check.d.ts.map

package/dist/src/mcp-tools/coherence/coherence-check.d.ts.map

@@ -0,0 +1 @@
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