@monoes/monograph 2.25.1 → 2.25.6

package/LICENSE

@@ -0,0 +1,191 @@
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package/README.md

@@ -37,6 +37,9 @@ monomind monograph search -q "authentication flow"
 # Show graph statistics
 monomind monograph stats
 
+# Embed graph nodes for semantic search
+monomind monograph embed
+
 # Watch for changes and rebuild incrementally
 monomind monograph watch
 
@@ -63,15 +66,22 @@ const impact = getMonographImpact(db, { name: 'login', filePath: 'src/auth/login
 
 ## MCP tools
 
-When used via Monomind's MCP server, monograph exposes 19 tools by default (+27 advanced via `MONOGRAPH_MCP_ADVANCED=1`):
+When used via Monomind's MCP server, monograph exposes 20 tools by default (+27 advanced via `MONOGRAPH_MCP_ADVANCED=1`):
 
 | Tool | Purpose |
 |---|---|
+| `monograph_build` | Build or refresh the graph |
 | `monograph_suggest` | Start every task — ranked relevant files |
 | `monograph_query` | BM25 keyword search with PPR graph reranking |
+| `monograph_brief` | Task text to entry points, covering docs and blast radius |
 | `monograph_impact` | Blast radius analysis (upstream + downstream) |
 | `monograph_god_nodes` | High-centrality internal files |
 | `monograph_context` | 360° view of a file |
+| `monograph_neighbors` | Direct neighbors of a node |
+| `monograph_stats` | Graph size statistics |
+| `monograph_get_node` | Fetch one node by id |
+| `monograph_api_impact` | Impact analysis for API changes |
+| `monograph_doctor` | Index health diagnostics |
 | `monograph_augment` | Graph-RAG context retrieval |
 | `monograph_dead_code` | Dead exports, orphan files, stale dist |
 | `monograph_detect_changes` | Map git diff to affected graph nodes |
@@ -88,38 +98,39 @@ Monograph utilizes a dual-tier parsing strategy for extracting code structure an
 > **This section is the authoritative source for Monograph's language/grammar counts.**
 > Other docs in this repo should link here instead of restating the numbers.
 
-1. **Tree-sitter AST Parsers — 14 grammar modules, 25 supported extensions**:
-   - **Grammar modules** (one `LanguageConfig` + tree-sitter package each, [`src/parsers/`](packages/@monomind/monograph/src/parsers/)): `c`, `cpp`, `csharp`, `dart`, `go`, `java`, `kotlin`, `php`, `python`, `ruby`, `rust`, `swift`, `typescript`, `vue` — 14 total. (`typescript` also covers JavaScript; there is no separate JS grammar.)
+1. **Tree-sitter AST Parsers — 14 grammar modules, 25 supported extensions** (WASM, via `web-tree-sitter`; no native build):
+   - **Grammar modules** (one `LanguageConfig` each, [`src/parsers/`](src/parsers/)): `c`, `cpp`, `csharp`, `dart`, `go`, `java`, `kotlin`, `php`, `python`, `ruby`, `rust`, `swift`, `typescript`, `vue` — 14 total. (`typescript` also covers JavaScript; there is no separate JS grammar.) The compiled grammars ship in [`wasm/`](wasm/) and are copied into `dist/wasm/` at build time; set `MONOMIND_WASM_DIR` to load them from another directory.
    - **Extensions**: `.ts`, `.tsx`, `.js`, `.jsx`, `.mjs`, `.cjs`, `.py`, `.go`, `.rs`, `.java`, `.c`, `.h`, `.cpp`, `.cc`, `.cxx`, `.hpp`, `.hxx`, `.cs`, `.rb`, `.swift`, `.php`, `.vue`, `.kt`, `.kts`, `.dart` — 25 total, mapped onto the 14 grammar modules above.
-   - **Grammar Loader**: Dynamically loads and caches Tree-sitter grammars per extension via `getParser(ext)` ([`loader.ts:64-83`](packages/@monomind/monograph/src/parsers/loader.ts#L64-L83)). Supports `<script>` block isolation for `.vue` files ([`loader.ts:128-142`](packages/@monomind/monograph/src/parsers/loader.ts#L128-L142)).
-   - **Best-effort grammars**: `getParser()` validates every grammar by binding it to a scratch `Parser` before trusting it — a `require()` that succeeds can still return an ABI-incompatible `Language` object, only caught on use (MEM-2, [`loader.ts:91-108`](packages/@monomind/monograph/src/parsers/loader.ts#L91-L108)). `vue` has an explicit fallback to the TypeScript grammar when its own binding fails this check ([`vue.ts`](packages/@monomind/monograph/src/parsers/vue.ts)). `csharp` (loads a prebuilt native binding directly since `tree-sitter-c-sharp`'s ESM entry can't be `require()`d) and `dart` are currently **failing this validation** in this checkout/environment (`csharp grammar load failed (tree-sitter-c-sharp: Cannot read properties of undefined ...)`; `dart grammar load failed (tree-sitter-dart: Invalid language object)`) and fall through to no symbols (`csharp`, which has no regex fallback) or the regex extractor (`dart`). Whether they work depends on the native binding's ABI compatibility with the installed `tree-sitter` core on a given platform/Node version — treat `csharp` and `dart` as best-effort, not guaranteed-working; the other 12 grammar modules validated successfully as of this writing.
+   - **Grammar Loader**: Loads and caches grammars per extension via `getParser(ext)` ([`loader.ts`](src/parsers/loader.ts)). `.vue` files always take the `<script>`-block path: the block is extracted and parsed with the TypeScript grammar ([`vue.ts`](src/parsers/vue.ts)).
+   - **Validation**: `getParser()` binds each grammar to a fresh `Parser` before trusting it, and records why a grammar failed to load (MEM-2) so `parseFile()` can report a diagnostic instead of silently returning 0 nodes. A failing `dart` grammar falls back to the regex extractor; other languages have no fallback and yield no symbols.
 2. **Regex Fallback Parsers (5 languages, 6 including the `dart` fallback when its tree-sitter grammar fails validation)**:
-   - Lightweight regex-based symbol extractors used when a Tree-sitter grammar is uninstalled, unsupported, or fails MEM-2 validation: **Scala**, **Lua**, **Zig**, **PowerShell**, **Elixir**, and (fallback-only) **Dart** ([`language-parsers.ts:1-122`](packages/@monomind/monograph/src/parsers/language-parsers.ts#L1-L122)).
+   - Lightweight regex-based symbol extractors used when a language has no tree-sitter grammar or its grammar fails validation: **Scala**, **Lua**, **Zig**, **PowerShell**, **Elixir**, and (fallback-only) **Dart** ([`language-parsers.ts`](src/parsers/language-parsers.ts)).
 
 ## SQLite Database Schema
 
-The graph is stored in a WAL-mode SQLite database (`PRAGMA journal_mode = WAL`) managed in [`schema.ts`](packages/@monomind/monograph/src/storage/schema.ts) and [`db.ts`](packages/@monomind/monograph/src/storage/db.ts):
+The graph is stored in a WAL-mode SQLite database (`PRAGMA journal_mode = WAL`) managed in [`schema.ts`](src/storage/schema.ts) and [`db.ts`](src/storage/db.ts):
 
-- **`nodes`**: Code symbols and files (`id`, `label`, `name`, `norm_label`, `file_path`, `start_line`, `end_line`, `community_id`, `is_exported`, `language`, `properties`, `embedding`).
+- **`nodes`**: Code symbols and files (`id`, `label`, `name`, `norm_label`, `file_path`, `start_line`, `end_line`, `community_id`, `is_exported`, `language`, `properties`; embeddings live in the separate `node_embeddings` table).
 - **`edges`**: Directed relationships between nodes (`id`, `source_id`, `target_id`, `relation`, `confidence`, `confidence_score`, `weight`, `reason`, `evidence`).
 - **`communities`**: Hierarchical community clusters (`id`, `label`, `size`, `cohesion_score`).
 - **`file_cache`**: SHA-256 incremental parse cache (`file_path`, `content_hash`, `last_parsed`, `node_count`, `edge_count`).
 - **`nodes_fts`**: Trigram-tokenized FTS5 virtual table (`tokenize='trigram'`) indexing `name`, `norm_label`, and `file_path` with sync triggers for rapid symbol and fuzzy text queries.
 - **`index_meta`**: Key-value system index metadata (including `last_commit_hash`).
+- Further tables (`node_summaries_fts`, `node_embeddings`, `wiki_pages`, `node_properties`, `suppressions`, `agent_interactions`) support summaries, embeddings, wiki pages and agent history.
 
 ## Relationship Types
 
-Monograph defines typed edges ([`types.ts:20-29`](packages/@monomind/monograph/src/types.ts#L20-L29)) categorized into structural, static analysis, and semantic relationships:
+Monograph defines typed edges ([`types.ts`](src/types.ts), `EdgeRelation`) categorized into structural, static analysis, and semantic relationships:
 
 - **`CONTAINS`**: Parent container to child element (e.g. File contains Class/Function, Class contains Method).
 - **`IMPORTS`**: File/Module import dependency (`import { x } from './y'`).
 - **`CALLS`**: Function/Method invocation between symbols.
 - **`ENTRY_POINT_OF`**: Entry point symbol associated with an agent process or application workflow.
-- Additional relations include `RE_EXPORTS`, `EXTENDS`, `IMPLEMENTS`, `HAS_METHOD`, `HAS_PROPERTY`, `ACCESSES`, `HANDLES_ROUTE`, `FETCHES`, `HANDLES_TOOL`, `WRAPS`, `QUERIES`, `REFERENCES`, `CO_OCCURS`, and LLM-inferred semantic relations (`DESCRIBES`, `CAUSES`, `CONTRASTS_WITH`, `PART_OF`, `RELATED_TO`, `USES`, `STRUCTURALLY_SIMILAR`).
+- Additional relations include `DEFINES`, `METHOD_OVERRIDES`, `METHOD_IMPLEMENTS`, `MEMBER_OF`, `STEP_IN_PROCESS`, `PARENT_SECTION`, `TAGGED_AS`, `TESTS`, `HAS_FIELD`, `RE_EXPORTS`, `EXTENDS`, `IMPLEMENTS`, `HAS_METHOD`, `HAS_PROPERTY`, `ACCESSES`, `HANDLES_ROUTE`, `FETCHES`, `HANDLES_TOOL`, `WRAPS`, `QUERIES`, `REFERENCES`, `CO_OCCURS`, and LLM-inferred semantic relations (`DESCRIBES`, `CAUSES`, `CONTRASTS_WITH`, `PART_OF`, `RELATED_TO`, `USES`, `STRUCTURALLY_SIMILAR`).
 
 ## Blast Radius Calculation (`rippleImpact`)
 
-Monograph calculates downstream cascade impact using the multi-hop `rippleImpact` BFS algorithm ([`ripple-impact.ts:51-84`](packages/@monomind/monograph/src/graph/ripple-impact.ts#L51-L84)):
+Monograph calculates downstream cascade impact using the multi-hop `rippleImpact` BFS algorithm ([`ripple-impact.ts`](src/graph/ripple-impact.ts)):
 
 - **Algorithm**: Breadth-First Search propagating through outgoing directed edge adjacency maps.
 - **Scoring Formula**:
@@ -129,7 +140,7 @@ Monograph calculates downstream cascade impact using the multi-hop `rippleImpact
 
 ## Graph Freshness & Git Staleness Tracking
 
-Monograph maintains graph synchronization with git repository state without full re-indexes ([`git-staleness.ts:13-66`](packages/@monomind/monograph/src/staleness/git-staleness.ts#L13-L66)):
+Monograph maintains graph synchronization with git repository state without full re-indexes ([`git-staleness.ts`](src/staleness/git-staleness.ts)):
 
 - **Commit Verification**: Compares stored `last_commit_hash` in `index_meta` against `git rev-parse HEAD`.
 - **Change Diffing**: If hashes diverge, executes `git diff --name-only <indexedCommit>..HEAD` to populate `changedSince` files.
@@ -138,10 +149,11 @@ Monograph maintains graph synchronization with git repository state without full
 
 ### Incremental Watch Mode
 
-`monomind monograph watch` (and the `monograph_watch` MCP tool) debounces file changes by 3s ([`watcher.ts:108-110`](packages/@monomind/monograph/src/watch/watcher.ts#L108-L110)), then updates the graph per changed file — delete existing nodes/edges for that file, re-parse, re-insert ([`orchestrator.ts:312-365`](packages/@monomind/monograph/src/pipeline/orchestrator.ts#L312-L365)):
+`monomind monograph watch` (and the `monograph_watch` MCP tool) debounces file changes by 3s ([`watcher.ts`](src/watch/watcher.ts)), then runs a rebuild for the changed batch via `buildIncrementalAsync` ([`orchestrator.ts`](src/pipeline/orchestrator.ts)):
 
-- **Incremental Threshold**: If a batch exceeds `INCREMENTAL_THRESHOLD` (20 changed files), it falls back to a full rebuild instead of per-file updates ([`orchestrator.ts:269-279`](packages/@monomind/monograph/src/pipeline/orchestrator.ts#L269-L279)).
-- **Deferred Full Rebuild**: After `FULL_REBUILD_IDLE_MS` (60s) with no further incremental activity, watch mode runs one full rebuild to refresh aggregate phases (communities, god-nodes, surprises, churn, report) that incremental updates don't recompute ([`watcher.ts:40-59`](packages/@monomind/monograph/src/watch/watcher.ts#L40-L59)).
+- **Rebuild, not patch**: `buildIncrementalAsync` runs a full `buildAsync` so cross-file relationships and derived analyses (communities, god-nodes) stay correct; the `file_cache` content hashes let unchanged files skip re-parsing.
+- **Deferred Full Rebuild**: After `FULL_REBUILD_IDLE_MS` (60s) with no further activity, watch mode runs one more full rebuild to refresh aggregate phases (communities, god-nodes, surprises, churn, report).
+- **Idle stop**: The watcher stops itself after 30 minutes with no changes (`idleTimeoutMs`).
 
 ## Links
 
@@ -151,5 +163,5 @@ Monograph maintains graph synchronization with git repository state without full
 
 ## License
 
-MIT
+Apache-2.0
 

package/dist/src/embeddings/transformers-embedder.d.ts.map

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+{"version":3,"file":"transformers-embedder.d.ts","sourceRoot":"","sources":["../../../src/embeddings/transformers-embedder.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAE3C;;;GAGG;AACH,eAAO,MAAM,eAAe,wCAAwC,CAAC;AAMrE,4FAA4F;AAC5F,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,GAAG,OAAO,CAEnE;AAED;;;;;;;;GAQG;AACH,wBAAsB,0BAA0B,CAC9C,IAAI,EAAE,MAAM,OAAO,CAAC,OAAO,CAAC,GAC3B,OAAO,CAAC,QAAQ,GAAG,IAAI,CAAC,CAyB1B"}

package/dist/src/embeddings/transformers-embedder.js.map

@@ -1 +1 @@
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package/dist/src/index.d.ts

@@ -91,6 +91,7 @@ export * from './search/ast-chunker.js';
 export * from './search/diacritic.js';
 export * from './search/fused-search.js';
 export * from './search/hybrid-query.js';
+export * from './search/relevance.js';
 export * from './search/rrf.js';
 export * from './security/safe-fetch.js';
 export * from './security/sensitive-files.js';

package/dist/src/index.d.ts.map

@@ -1 +1 @@
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package/dist/src/index.js

@@ -92,6 +92,7 @@ export * from './search/ast-chunker.js';
 export * from './search/diacritic.js';
 export * from './search/fused-search.js';
 export * from './search/hybrid-query.js';
+export * from './search/relevance.js';
 export * from './search/rrf.js';
 export * from './security/safe-fetch.js';
 export * from './security/sensitive-files.js';

package/dist/src/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,yBAAyB,CAAC;AACxC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,6BAA6B,CAAC;AAC5C,cAAc,iCAAiC,CAAC;AAChD,cAAc,+BAA+B,CAAC;AAC9C,cAAc,uBAAuB,CAAC;AACtC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,0BAA0B,CAAC;AACzC,cAAc,6BAA6B,CAAC;AAC5C,cAAc,qBAAqB,CAAC;AACpC,cAAc,kBAAkB,CAAC;AACjC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,sBAAsB,CAAC;AACrC,cAAc,wBAAwB,CAAC;AACvC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,uBAAuB,CAAC;AACtC,cAAc,uCAAuC,CAAC;AACtD,cAAc,8BAA8B,CAAC;AAC7C,cAAc,oBAAoB,CAAC;AACnC,cAAc,iBAAiB,CAAC;AAChC,cAAc,oBAAoB,CAAC;AACnC,cAAc,qBAAqB,CAAC;AACpC,cAAc,kBAAkB,CAAC;AACjC,cAAc,kBAAkB,CAAC;AACjC,cAAc,qBAAqB,CAAC;AACpC,cAAc,sBAAsB,CAAC;AACrC,cAAc,mBAAmB,CAAC;AAClC,cAAc,iBAAiB,CAAC;AAChC,cAAc,qBAAqB,CAAC;AACpC,cAAc,mBAAmB,CAAC;AAClC,cAAc,sBAAsB,CAAC;AACrC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,iBAAiB,CAAC;AAChC,cAAc,wBAAwB,CAAC;AACvC,cAAc,yBAAyB,CAAC;AACxC,cAAc,mBAAmB,CAAC;AAClC,cAAc,kBAAkB,CAAC;AACjC,cAAc,wBAAwB,CAAC;AACvC,cAAc,yBAAyB,CAAC;AACxC,cAAc,qBAAqB,CAAC;AACpC,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AACzC,cAAc,sBAAsB,CAAC;AACrC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,6BAA6B,CAAC;AAC5C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,0BAA0B,CAAC;AACzC,cAAc,0BAA0B,CAAC;AACzC,cAAc,wBAAwB,CAAC;AACvC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,8BAA8B,CAAC;AAC7C,cAAc,6BAA6B,CAAC;AAC5C,cAAc,uBAAuB,CAAC;AACtC,cAAc,0BAA0B,CAAC;AACzC,cAAc,wBAAwB,CAAC;AACvC,cAAc,wBAAwB,CAAC;AACvC,cAAc,0BAA0B,CAAC;AACzC,4FAA4F;AAC5F,cAAc,wBAAwB,CAAC;AACvC,cAAc,2BAA2B,CAAC;AAC1C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,2BAA2B,CAAC;AAC1C,cAAc,sBAAsB,CAAC;AACrC,cAAc,2BAA2B,CAAC;AAC1C,cAAc,0BAA0B,CAAC;AACzC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,6BAA6B,CAAC;AAC5C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,wBAAwB,CAAC;AACvC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,+BAA+B,CAAC;AAC9C,cAAc,mCAAmC,CAAC;AAClD,cAAc,uCAAuC,CAAC;AACtD,cAAc,sCAAsC,CAAC;AACrD,cAAc,gCAAgC,CAAC;AAC/C,cAAc,sCAAsC,CAAC;AACrD,cAAc,qCAAqC,CAAC;AACpD,cAAc,yCAAyC,CAAC;AACxD,cAAc,sBAAsB,CAAC;AACrC,cAAc,qBAAqB,CAAC;AACpC,cAAc,6BAA6B,CAAC;AAC5C,cAAc,6BAA6B,CAAC;AAC5C,cAAc,wCAAwC,CAAC;AACvD,cAAc,yBAAyB,CAAC;AACxC,cAAc,uBAAuB,CAAC;AACtC,cAAc,0BAA0B,CAAC;AACzC,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,0BAA0B,CAAC;AACzC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,6BAA6B,CAAC;AAC5C,cAAc,8BAA8B,CAAC;AAC7C,cAAc,iBAAiB,CAAC;AAChC,cAAc,yBAAyB,CAAC;AACxC,cAAc,wBAAwB,CAAC;AACvC,cAAc,yBAAyB,CAAC;AACxC,cAAc,YAAY,CAAC;AAC3B,cAAc,sCAAsC,CAAC;AACrD,cAAc,0BAA0B,CAAC;AACzC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,cAAc,CAAC;AAC7B,cAAc,qBAAqB,CAAC;AACpC,cAAc,mBAAmB,CAAC;AAClC,cAAc,mBAAmB,CAAC;AAClC,cAAc,iBAAiB,CAAC;AAChC,cAAc,0BAA0B,CAAC;AACzC,6GAA6G;AAC7G,cAAc,0BAA0B,CAAC;AACzC,cAAc,qBAAqB,CAAC;AACpC,cAAc,0BAA0B,CAAC"}

package/dist/src/mcp-tools/brief.d.ts

@@ -12,6 +12,8 @@ export interface BriefSymbol {
 }
 export interface MonographBrief {
     task: string;
+    /** False when nothing in the graph is about the task — the lists below are then empty. */
+    relevant: boolean;
     /** Best-matching code symbols/files, each with its immediate surroundings. */
     entryPoints: BriefSymbol[];
     /** Documentation sections about the task. */

package/dist/src/mcp-tools/brief.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"brief.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/brief.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAGvD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AACjD,OAAO,EAAmB,KAAK,SAAS,EAAE,MAAM,aAAa,CAAC;AAE9D,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,aAAa,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,aAAa,EAAE,CAAC;IACzB,OAAO,EAAE,aAAa,EAAE,CAAC;IACzB,4DAA4D;IAC5D,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,8EAA8E;IAC9E,WAAW,EAAE,WAAW,EAAE,CAAC;IAC3B,6CAA6C;IAC7C,IAAI,EAAE,aAAa,EAAE,CAAC;IACtB,mDAAmD;IACnD,MAAM,EAAE;QACN,MAAM,EAAE,MAAM,CAAC;QACf,IAAI,EAAE,MAAM,CAAC;QACb,SAAS,EAAE,SAAS,CAAC;QACrB,SAAS,EAAE,MAAM,CAAC;QAClB,aAAa,EAAE,MAAM,EAAE,CAAC;QACxB,aAAa,EAAE,MAAM,EAAE,CAAC;KACzB,GAAG,IAAI,CAAC;CACV;AA6BD;;;;;GAKG;AACH,wBAAsB,iBAAiB,CACrC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,IAAI,EAAE,MAAM,EACZ,OAAO,GAAE;IAAE,WAAW,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,QAAQ,GAAG,IAAI,CAAA;CAAO,GAChF,OAAO,CAAC,cAAc,CAAC,CA4CzB"}
+{"version":3,"file":"brief.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/brief.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAIvD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AACjD,OAAO,EAAmB,KAAK,SAAS,EAAE,MAAM,aAAa,CAAC;AAE9D,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,aAAa,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,aAAa,EAAE,CAAC;IACzB,OAAO,EAAE,aAAa,EAAE,CAAC;IACzB,4DAA4D;IAC5D,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,0FAA0F;IAC1F,QAAQ,EAAE,OAAO,CAAC;IAClB,8EAA8E;IAC9E,WAAW,EAAE,WAAW,EAAE,CAAC;IAC3B,6CAA6C;IAC7C,IAAI,EAAE,aAAa,EAAE,CAAC;IACtB,mDAAmD;IACnD,MAAM,EAAE;QACN,MAAM,EAAE,MAAM,CAAC;QACf,IAAI,EAAE,MAAM,CAAC;QACb,SAAS,EAAE,SAAS,CAAC;QACrB,SAAS,EAAE,MAAM,CAAC;QAClB,aAAa,EAAE,MAAM,EAAE,CAAC;QACxB,aAAa,EAAE,MAAM,EAAE,CAAC;KACzB,GAAG,IAAI,CAAC;CACV;AA6BD;;;;;GAKG;AACH,wBAAsB,iBAAiB,CACrC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,IAAI,EAAE,MAAM,EACZ,OAAO,GAAE;IAAE,WAAW,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,QAAQ,GAAG,IAAI,CAAA;CAAO,GAChF,OAAO,CAAC,cAAc,CAAC,CA8CzB"}

package/dist/src/mcp-tools/brief.js

@@ -1,4 +1,5 @@
 import { searchGraphFused } from '../search/fused-search.js';
+import { assessRelevance } from '../search/relevance.js';
 import { rowToNode } from '../storage/node-store.js';
 import { monographImpact } from './impact.js';
 function related(db, nodeId, inbound, limit) {
@@ -27,8 +28,10 @@ export async function getMonographBrief(db, task, options = {}) {
     const nEntry = options.entryPoints ?? 5;
     const nDocs = options.docs ?? 3;
     const { embedder } = options;
-    const code = await searchGraphFused(db, task, { limit: nEntry, scope: 'code', embedder });
-    const docHits = await searchGraphFused(db, task, { limit: nDocs, scope: 'docs', embedder });
+    const rawCode = await searchGraphFused(db, task, { limit: nEntry, scope: 'code', embedder });
+    const rawDocs = await searchGraphFused(db, task, { limit: nDocs, scope: 'docs', embedder });
+    const code = assessRelevance(db, task, rawCode).relevant ? rawCode : [];
+    const docHits = assessRelevance(db, task, rawDocs).relevant ? rawDocs : [];
     const entryPoints = [];
     for (const hit of code) {
         const row = db.prepare('SELECT * FROM nodes WHERE id = ?').get(hit.id);
@@ -60,6 +63,6 @@ export async function getMonographBrief(db, task, options = {}) {
             affectedTests: result.affectedTests,
         };
     }
-    return { task, entryPoints, docs, impact };
+    return { task, relevant: entryPoints.length + docs.length > 0, entryPoints, docs, impact };
 }
 //# sourceMappingURL=brief.js.map

package/dist/src/mcp-tools/brief.js.map

@@ -1 +1 @@
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package/dist/src/parsers/extractor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"extractor.d.ts","sourceRoot":"","sources":["../../../src/parsers/extractor.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,MAAM,iBAAiB,CAAC;AAI1C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AAC3D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE/C,wBAAgB,cAAc,CAC5B,IAAI,EAAE,MAAM,CAAC,IAAI,EACjB,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,cAAc,EACtB,GAAG,EAAE,MAAM,GACV,WAAW,CA0Nb"}

package/dist/src/parsers/extractor.js

@@ -1,3 +1,4 @@
+import { isAnonymousClosure } from '../storage/anonymous-closure.js';
 import { CONFIDENCE_SCORE, fileId, makeId, symbolId, toNormLabel } from '../types.js';
 export function extractSymbols(tree, source, repoPath, config, ext) {
     const nodes = [];
@@ -95,7 +96,22 @@ export function extractSymbols(tree, source, repoPath, config, ext) {
         if (isClass || isStruct || isEnum || isFunction || isMethod || isInterface || isConstructor) {
             const nameNode = node.childForFieldName(config.nameField);
             const rawName = nameNode?.text ?? node.text.split('\n')[0].slice(0, 40);
-            const name = config.nameRefiner ? config.nameRefiner(node, rawName) : rawName;
+            let name = config.nameRefiner ? config.nameRefiner(node, rawName) : rawName;
+            if (!nameNode &&
+                (isFunction || isMethod) &&
+                isAnonymousClosure({ label: 'Function', name })) {
+                // An anonymous closure is not a symbol: its calls fold into the enclosing named
+                // callable (the scope-resolution index only holds nodes that exist). A closure bound
+                // to a file-level const is the one exception — it is that const's function.
+                const binding = node.parent?.type === 'variable_declarator' ? node.parent : null;
+                const bound = binding?.childForFieldName('name');
+                if (scope.length > 0 || bound?.type !== 'identifier') {
+                    for (let i = 0; i < node.childCount; i++)
+                        walk(node.child(i), parentId, scope);
+                    return;
+                }
+                name = bound.text;
+            }
             // When a node type is in BOTH functionNodeTypes and methodNodeTypes (e.g. Python
             // `function_definition`), check parent chain to disambiguate: a function_definition
             // whose grandparent is a class_definition is a method, otherwise it's a function.

package/dist/src/parsers/extractor.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/index-scope.d.ts

@@ -12,6 +12,9 @@ export type IndexScope = 'code' | 'all';
 export declare function scopeForOptions(codeOnly: boolean): IndexScope;
 /** The scope the stored graph was last built with, or null if never recorded. */
 export declare function readIndexScope(db: MonographDb): IndexScope | null;
+/** Whether the project opted in to indexing tool-managed assets, or null if never recorded. */
+export declare function readToolAssets(db: MonographDb): boolean | null;
+export declare function writeToolAssets(db: MonographDb, on: boolean): void;
 export declare function writeIndexScope(db: MonographDb, scope: IndexScope): void;
 /**
  * Whether `filePath` belongs to the source domain a build at `scope` actually

package/dist/src/pipeline/index-scope.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index-scope.d.ts","sourceRoot":"","sources":["../../../src/pipeline/index-scope.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD;;;;;;;;GAQG;AACH,MAAM,MAAM,UAAU,GAAG,MAAM,GAAG,KAAK,CAAC;AAIxC,wBAAgB,eAAe,CAAC,QAAQ,EAAE,OAAO,GAAG,UAAU,CAE7D;AAED,iFAAiF;AACjF,wBAAgB,cAAc,CAAC,EAAE,EAAE,WAAW,GAAG,UAAU,GAAG,IAAI,CAUjE;AAED,wBAAgB,eAAe,CAAC,EAAE,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,IAAI,CAExE;AAED;;;;;GAKG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,GAAG,OAAO,CAG1E"}
+{"version":3,"file":"index-scope.d.ts","sourceRoot":"","sources":["../../../src/pipeline/index-scope.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD;;;;;;;;GAQG;AACH,MAAM,MAAM,UAAU,GAAG,MAAM,GAAG,KAAK,CAAC;AAIxC,wBAAgB,eAAe,CAAC,QAAQ,EAAE,OAAO,GAAG,UAAU,CAE7D;AAED,iFAAiF;AACjF,wBAAgB,cAAc,CAAC,EAAE,EAAE,WAAW,GAAG,UAAU,GAAG,IAAI,CAUjE;AAID,+FAA+F;AAC/F,wBAAgB,cAAc,CAAC,EAAE,EAAE,WAAW,GAAG,OAAO,GAAG,IAAI,CAS9D;AAED,wBAAgB,eAAe,CAAC,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,OAAO,GAAG,IAAI,CAKlE;AAED,wBAAgB,eAAe,CAAC,EAAE,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,IAAI,CAExE;AAED;;;;;GAKG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,GAAG,OAAO,CAG1E"}

package/dist/src/pipeline/index-scope.js

@@ -16,6 +16,20 @@ export function readIndexScope(db) {
         return null;
     }
 }
+const TOOL_ASSETS_KEY = 'tool_assets';
+/** Whether the project opted in to indexing tool-managed assets, or null if never recorded. */
+export function readToolAssets(db) {
+    try {
+        const row = db.prepare('SELECT value FROM index_meta WHERE key = ?').get(TOOL_ASSETS_KEY);
+        return row ? row.value === '1' : null;
+    }
+    catch {
+        return null;
+    }
+}
+export function writeToolAssets(db, on) {
+    db.prepare('INSERT OR REPLACE INTO index_meta VALUES (?, ?)').run(TOOL_ASSETS_KEY, on ? '1' : '0');
+}
 export function writeIndexScope(db, scope) {
     db.prepare('INSERT OR REPLACE INTO index_meta VALUES (?, ?)').run(INDEX_SCOPE_KEY, scope);
 }

package/dist/src/pipeline/index-scope.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index-scope.js","sourceRoot":"","sources":["../../../src/pipeline/index-scope.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,oBAAoB,EAAE,MAAM,sBAAsB,CAAC;AAc5D,MAAM,eAAe,GAAG,cAAc,CAAC;AAEvC,MAAM,UAAU,eAAe,CAAC,QAAiB;IAC/C,OAAO,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC;AACnC,CAAC;AAED,iFAAiF;AACjF,MAAM,UAAU,cAAc,CAAC,EAAe;IAC5C,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,EAAE,CAAC,OAAO,CAAC,4CAA4C,CAAC,CAAC,GAAG,CAAC,eAAe,CAE3E,CAAC;QACd,IAAI,GAAG,EAAE,KAAK,KAAK,MAAM,IAAI,GAAG,EAAE,KAAK,KAAK,KAAK;YAAE,OAAO,GAAG,CAAC,KAAK,CAAC;QACpE,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,eAAe,GAAG,aAAa,CAAC;AAEtC,+FAA+F;AAC/F,MAAM,UAAU,cAAc,CAAC,EAAe;IAC5C,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,EAAE,CAAC,OAAO,CAAC,4CAA4C,CAAC,CAAC,GAAG,CAAC,eAAe,CAE3E,CAAC;QACd,OAAO,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,KAAK,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC;IACxC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,EAAe,EAAE,EAAW;IAC1D,EAAE,CAAC,OAAO,CAAC,iDAAiD,CAAC,CAAC,GAAG,CAC/D,eAAe,EACf,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CACf,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,EAAe,EAAE,KAAiB;IAChE,EAAE,CAAC,OAAO,CAAC,iDAAiD,CAAC,CAAC,GAAG,CAAC,eAAe,EAAE,KAAK,CAAC,CAAC;AAC5F,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,aAAa,CAAC,QAAgB,EAAE,KAAiB;IAC/D,IAAI,KAAK,KAAK,KAAK;QAAE,OAAO,IAAI,CAAC;IACjC,OAAO,oBAAoB,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC;AAC/D,CAAC"}

package/dist/src/pipeline/manifest.d.ts

@@ -10,6 +10,8 @@ export interface IndexManifest {
     builtAt: string;
     durationMs: number;
     scope: IndexScope;
+    /** Whether tool-managed assets (.pi/, .claude agents and skills) were indexed. */
+    toolAssets?: boolean;
     commit: string | null;
     /** Version of the symbol-id scheme; ids from different versions are not comparable. */
     identityVersion: number;
@@ -27,6 +29,7 @@ export declare function readManifest(db: MonographDb): IndexManifest | null;
 export declare function writeManifest(db: MonographDb, input: {
     startedAt: number;
     scope: IndexScope;
+    toolAssets: boolean;
     commit: string | null;
     summarized: number;
     parseErrors: string[];

package/dist/src/pipeline/manifest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/pipeline/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAKnD;;;GAGG;AACH,MAAM,WAAW,aAAa;IAC5B,iFAAiF;IACjF,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,UAAU,CAAC;IAClB,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,uFAAuF;IACvF,eAAe,EAAE,MAAM,CAAC;IACxB,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,sEAAsE;IACtE,UAAU,EAAE,MAAM,CAAC;IACnB,4EAA4E;IAC5E,aAAa,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC;CACpD;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,WAAW,GAAG,aAAa,GAAG,IAAI,CASlE;AAaD,wBAAgB,aAAa,CAC3B,EAAE,EAAE,WAAW,EACf,KAAK,EAAE;IACL,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,UAAU,CAAC;IAClB,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,EAAE,CAAC;CACvB,GACA,aAAa,CAqBf"}
+{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/pipeline/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAKnD;;;GAGG;AACH,MAAM,WAAW,aAAa;IAC5B,iFAAiF;IACjF,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,UAAU,CAAC;IAClB,kFAAkF;IAClF,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,uFAAuF;IACvF,eAAe,EAAE,MAAM,CAAC;IACxB,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,sEAAsE;IACtE,UAAU,EAAE,MAAM,CAAC;IACnB,4EAA4E;IAC5E,aAAa,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC;CACpD;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,WAAW,GAAG,aAAa,GAAG,IAAI,CASlE;AAaD,wBAAgB,aAAa,CAC3B,EAAE,EAAE,WAAW,EACf,KAAK,EAAE;IACL,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,UAAU,CAAC;IAClB,UAAU,EAAE,OAAO,CAAC;IACpB,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,EAAE,CAAC;CACvB,GACA,aAAa,CAsBf"}

package/dist/src/pipeline/manifest.js

@@ -22,6 +22,7 @@ export function writeManifest(db, input) {
         builtAt: new Date().toISOString(),
         durationMs: Date.now() - input.startedAt,
         scope: input.scope,
+        toolAssets: input.toolAssets,
         commit: input.commit,
         identityVersion: SYMBOL_ID_VERSION,
         nodes: countBy(db, 'nodes', 'label'),