@monoes/monograph 1.5.8 → 1.6.1

package/dist/src/pipeline/phases/call-site-extractors.js

@@ -1,33 +1,176 @@
 // ── Call site extraction by language ──────────────────────────────────────────
 // ── Language keyword sets ────────────────────────────────────────────────────
 const JS_KEYWORDS = new Set([
-    'if', 'for', 'while', 'switch', 'return', 'function', 'class', 'new', 'typeof',
-    'await', 'catch', 'throw', 'delete', 'void', 'instanceof', 'in', 'of',
-    'import', 'export', 'yield', 'async', 'super', 'this', 'const', 'let', 'var',
-    'try', 'finally', 'break', 'continue', 'debugger', 'with', 'do',
+    'if',
+    'for',
+    'while',
+    'switch',
+    'return',
+    'function',
+    'class',
+    'new',
+    'typeof',
+    'await',
+    'catch',
+    'throw',
+    'delete',
+    'void',
+    'instanceof',
+    'in',
+    'of',
+    'import',
+    'export',
+    'yield',
+    'async',
+    'super',
+    'this',
+    'const',
+    'let',
+    'var',
+    'try',
+    'finally',
+    'break',
+    'continue',
+    'debugger',
+    'with',
+    'do',
 ]);
 const PY_KEYWORDS = new Set([
-    'if', 'for', 'while', 'with', 'return', 'def', 'class', 'import', 'from',
-    'raise', 'yield', 'lambda', 'await', 'async', 'del', 'pass', 'assert',
-    'except', 'elif', 'else', 'not', 'and', 'or', 'in', 'is', 'print',
+    'if',
+    'for',
+    'while',
+    'with',
+    'return',
+    'def',
+    'class',
+    'import',
+    'from',
+    'raise',
+    'yield',
+    'lambda',
+    'await',
+    'async',
+    'del',
+    'pass',
+    'assert',
+    'except',
+    'elif',
+    'else',
+    'not',
+    'and',
+    'or',
+    'in',
+    'is',
+    'print',
 ]);
 const GO_KEYWORDS = new Set([
-    'if', 'for', 'range', 'return', 'func', 'type', 'var', 'const', 'import', 'package',
-    'go', 'defer', 'select', 'case', 'default', 'break', 'continue', 'goto', 'fallthrough',
-    'chan', 'map', 'struct', 'interface', 'make', 'new', 'len', 'cap', 'append', 'delete',
-    'panic', 'recover', 'close', 'switch', 'else',
+    'if',
+    'for',
+    'range',
+    'return',
+    'func',
+    'type',
+    'var',
+    'const',
+    'import',
+    'package',
+    'go',
+    'defer',
+    'select',
+    'case',
+    'default',
+    'break',
+    'continue',
+    'goto',
+    'fallthrough',
+    'chan',
+    'map',
+    'struct',
+    'interface',
+    'make',
+    'new',
+    'len',
+    'cap',
+    'append',
+    'delete',
+    'panic',
+    'recover',
+    'close',
+    'switch',
+    'else',
 ]);
 const JAVA_KEYWORDS = new Set([
-    'if', 'for', 'while', 'do', 'switch', 'case', 'return', 'class', 'interface', 'enum',
-    'new', 'extends', 'implements', 'import', 'package', 'throw', 'throws', 'catch', 'try',
-    'finally', 'static', 'final', 'abstract', 'public', 'private', 'protected', 'void',
-    'break', 'continue', 'default', 'else', 'instanceof', 'this', 'super',
+    'if',
+    'for',
+    'while',
+    'do',
+    'switch',
+    'case',
+    'return',
+    'class',
+    'interface',
+    'enum',
+    'new',
+    'extends',
+    'implements',
+    'import',
+    'package',
+    'throw',
+    'throws',
+    'catch',
+    'try',
+    'finally',
+    'static',
+    'final',
+    'abstract',
+    'public',
+    'private',
+    'protected',
+    'void',
+    'break',
+    'continue',
+    'default',
+    'else',
+    'instanceof',
+    'this',
+    'super',
 ]);
 const RUST_KEYWORDS = new Set([
-    'if', 'let', 'for', 'while', 'loop', 'match', 'return', 'fn', 'struct', 'enum', 'trait',
-    'impl', 'use', 'mod', 'pub', 'super', 'self', 'type', 'where', 'in', 'as', 'mut',
-    'ref', 'move', 'async', 'await', 'dyn', 'extern', 'crate', 'static', 'const', 'unsafe',
-    'break', 'continue', 'else',
+    'if',
+    'let',
+    'for',
+    'while',
+    'loop',
+    'match',
+    'return',
+    'fn',
+    'struct',
+    'enum',
+    'trait',
+    'impl',
+    'use',
+    'mod',
+    'pub',
+    'super',
+    'self',
+    'type',
+    'where',
+    'in',
+    'as',
+    'mut',
+    'ref',
+    'move',
+    'async',
+    'await',
+    'dyn',
+    'extern',
+    'crate',
+    'static',
+    'const',
+    'unsafe',
+    'break',
+    'continue',
+    'else',
 ]);
 // ── Extension sets ───────────────────────────────────────────────────────────
 export const TS_JS_EXTS = new Set(['.ts', '.tsx', '.js', '.jsx']);
@@ -37,7 +180,12 @@ const GO_EXTS = new Set(['.go']);
 const JAVA_EXTS = new Set(['.java']);
 const RUST_EXTS = new Set(['.rs']);
 export function isSupportedExt(ext) {
-    return TS_JS_EXTS.has(ext) || CJS_MJS_EXTS.has(ext) || PY_EXTS.has(ext) || GO_EXTS.has(ext) || JAVA_EXTS.has(ext) || RUST_EXTS.has(ext);
+    return (TS_JS_EXTS.has(ext) ||
+        CJS_MJS_EXTS.has(ext) ||
+        PY_EXTS.has(ext) ||
+        GO_EXTS.has(ext) ||
+        JAVA_EXTS.has(ext) ||
+        RUST_EXTS.has(ext));
 }
 // ── Generic extractor for languages with method.call and direct() patterns ──
 function extractSimpleCallSites(source, filePath, fileNodeId, keywords, directCharClass = '[A-Za-z_][\\w]*') {
@@ -45,14 +193,28 @@ function extractSimpleCallSites(source, filePath, fileNodeId, keywords, directCh
     const methodPattern = /(\w+)\.(\w+)\s*\(/g;
     let m;
     while ((m = methodPattern.exec(source)) !== null) {
-        sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: `${m[1]}.${m[2]}`, form: 'method', receiverName: m[1], methodName: m[2] });
+        sites.push({
+            offset: m.index,
+            callerFileNodeId: fileNodeId,
+            callerFilePath: filePath,
+            calleeRaw: `${m[1]}.${m[2]}`,
+            form: 'method',
+            receiverName: m[1],
+            methodName: m[2],
+        });
     }
     const directPattern = new RegExp(`(?<![.[\\w])(${directCharClass})\\s*\\(`, 'g');
     while ((m = directPattern.exec(source)) !== null) {
         const name = m[1];
         if (keywords.has(name))
             continue;
-        sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: name, form: 'direct' });
+        sites.push({
+            offset: m.index,
+            callerFileNodeId: fileNodeId,
+            callerFilePath: filePath,
+            calleeRaw: name,
+            form: 'direct',
+        });
     }
     return sites;
 }
@@ -78,43 +240,93 @@ export function extractCallSites(source, filePath, fileNodeId, ext) {
         const methodPattern = /(\w+)\.(\w+)\s*(?:<[^>]*>\s*)?\(/g;
         let m;
         while ((m = methodPattern.exec(source)) !== null) {
-            sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: `${m[1]}.${m[2]}`, form: 'method', receiverName: m[1], methodName: m[2] });
+            sites.push({
+                offset: m.index,
+                callerFileNodeId: fileNodeId,
+                callerFilePath: filePath,
+                calleeRaw: `${m[1]}.${m[2]}`,
+                form: 'method',
+                receiverName: m[1],
+                methodName: m[2],
+            });
         }
         const chainedPattern = /[)\]]\s*\.(\w+)\s*(?:<[^>]*>\s*)?\(/g;
         while ((m = chainedPattern.exec(source)) !== null) {
             const name = m[1];
             if (JS_KEYWORDS.has(name))
                 continue;
-            sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: `?.${name}`, form: 'method', methodName: name });
+            sites.push({
+                offset: m.index,
+                callerFileNodeId: fileNodeId,
+                callerFilePath: filePath,
+                calleeRaw: `?.${name}`,
+                form: 'method',
+                methodName: name,
+            });
         }
         const directPattern = /(?<![.[\w])([A-Za-z_$][\w$]*)\s*(?:<[^>]*>\s*)?\(/g;
         while ((m = directPattern.exec(source)) !== null) {
             const name = m[1];
             if (JS_KEYWORDS.has(name))
                 continue;
-            sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: name, form: 'direct', methodName: name });
+            sites.push({
+                offset: m.index,
+                callerFileNodeId: fileNodeId,
+                callerFilePath: filePath,
+                calleeRaw: name,
+                form: 'direct',
+                methodName: name,
+            });
         }
         const newPattern = /\bnew\s+([A-Z][\w$]*)\s*(?:<[^>]*>\s*)?\(/g;
         while ((m = newPattern.exec(source)) !== null) {
-            sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: `new ${m[1]}`, form: 'direct', methodName: m[1] });
+            sites.push({
+                offset: m.index,
+                callerFileNodeId: fileNodeId,
+                callerFilePath: filePath,
+                calleeRaw: `new ${m[1]}`,
+                form: 'direct',
+                methodName: m[1],
+            });
         }
         const dynamicPattern = /\w+\s*\[[\w'"` ]+\]\s*\(/g;
         while ((m = dynamicPattern.exec(source)) !== null) {
-            sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: m[0], form: 'dynamic' });
+            sites.push({
+                offset: m.index,
+                callerFileNodeId: fileNodeId,
+                callerFilePath: filePath,
+                calleeRaw: m[0],
+                form: 'dynamic',
+            });
         }
     }
     else if (PY_EXTS.has(ext)) {
         const methodPattern = /(\w+)\.(\w+)\s*\(/g;
         let m;
         while ((m = methodPattern.exec(source)) !== null) {
-            sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: `${m[1]}.${m[2]}`, form: 'method', receiverName: m[1], methodName: m[2] });
+            sites.push({
+                offset: m.index,
+                callerFileNodeId: fileNodeId,
+                callerFilePath: filePath,
+                calleeRaw: `${m[1]}.${m[2]}`,
+                form: 'method',
+                receiverName: m[1],
+                methodName: m[2],
+            });
         }
         const directPattern = /(?<![.[\w])([A-Za-z_][\w]*)\s*\(/g;
         while ((m = directPattern.exec(source)) !== null) {
             const name = m[1];
             if (PY_KEYWORDS.has(name))
                 continue;
-            sites.push({ offset: m.index, callerFileNodeId: fileNodeId, callerFilePath: filePath, calleeRaw: name, form: 'direct', methodName: name });
+            sites.push({
+                offset: m.index,
+                callerFileNodeId: fileNodeId,
+                callerFilePath: filePath,
+                calleeRaw: name,
+                form: 'direct',
+                methodName: name,
+            });
         }
     }
     return sites;

package/dist/src/pipeline/phases/call-site-extractors.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/phases/communities.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"communities.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/communities.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAKjD,MAAM,WAAW,iBAAiB;IAChC,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,eAAe,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACrC,cAAc,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACrC;AAED,wBAAgB,eAAe,CAC7B,WAAW,EAAE,MAAM,EACnB,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,EAChC,KAAK,EAAE,KAAK,CAAC;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,GACnD,MAAM,CAsBR;AAED;;;;;;;;;GASG;AACH,wBAAgB,wBAAwB,CACtC,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,EAChC,KAAK,EAAE,KAAK,CAAC;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,GACnD,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAgDrB;AAED,eAAO,MAAM,gBAAgB,EAAE,aAAa,CAAC,iBAAiB,CAsE7D,CAAC;AAEF;;;GAGG;AACH,wBAAgB,uBAAuB,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,YAAY,EAAE,MAAM,GAAG,MAAM,EAAE,EAAE,CAO7F"}

package/dist/src/pipeline/phases/communities.js

@@ -1,6 +1,6 @@
 import louvain from 'graphology-communities-louvain';
-import { leiden } from './leiden.js';
 import { loadGraphFromEdges } from '../../graph/loader.js';
+import { leiden } from './leiden.js';
 export function computeCohesion(communityId, memberships, edges) {
     const members = [...memberships.entries()].filter(([, c]) => c === communityId).map(([id]) => id);
     const n = members.length;
@@ -58,9 +58,7 @@ export function computeAllCohesionScores(memberships, edges) {
             seen = new Set();
             seenEdgeKeys.set(commSrc, seen);
         }
-        const key = e.sourceId < e.targetId
-            ? `${e.sourceId}\0${e.targetId}`
-            : `${e.targetId}\0${e.sourceId}`;
+        const key = e.sourceId < e.targetId ? `${e.sourceId}\0${e.targetId}` : `${e.targetId}\0${e.sourceId}`;
         if (!seen.has(key)) {
             seen.add(key);
             internalEdgeCounts.set(commSrc, (internalEdgeCounts.get(commSrc) ?? 0) + 1);
@@ -111,7 +109,7 @@ export const communitiesPhase = {
             if (!communityDegrees.has(commId))
                 communityDegrees.set(commId, new Map());
             const deg = graph.degree(nodeId) ?? 0;
-            communityDegrees.get(commId).set(nodeId, deg);
+            communityDegrees.get(commId)?.set(nodeId, deg);
         }
         for (const [commId, nodeDegs] of communityDegrees) {
             const topNode = [...nodeDegs.entries()].sort((a, b) => b[1] - a[1])[0]?.[0] ?? '';

package/dist/src/pipeline/phases/communities.js.map

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package/dist/src/pipeline/phases/contextual-proximity.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"contextual-proximity.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/contextual-proximity.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAKlE,MAAM,WAAW,yBAAyB;IACxC,aAAa,EAAE,MAAM,CAAC;IACtB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED,eAAO,MAAM,wBAAwB,EAAE,aAAa,CAAC,yBAAyB,CA6E7E,CAAC"}
+{"version":3,"file":"contextual-proximity.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/contextual-proximity.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAmB,aAAa,EAAE,MAAM,aAAa,CAAC;AAElE,MAAM,WAAW,yBAAyB;IACxC,aAAa,EAAE,MAAM,CAAC;IACtB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED,eAAO,MAAM,wBAAwB,EAAE,aAAa,CAAC,yBAAyB,CAqF7E,CAAC"}

package/dist/src/pipeline/phases/contextual-proximity.js

@@ -1,5 +1,5 @@
-import { makeId, CONFIDENCE_SCORE } from '../../types.js';
 import { insertEdges } from '../../storage/edge-store.js';
+import { CONFIDENCE_SCORE, makeId } from '../../types.js';
 export const contextualProximityPhase = {
     name: 'contextual-proximity',
     deps: ['docs-parse', 'pdf-parse'],
@@ -72,7 +72,10 @@ export const contextualProximityPhase = {
         }
         if (edges.length > 0)
             insertEdges(ctx.db, edges);
-        ctx.onProgress?.({ phase: 'contextual-proximity', message: `${edges.length} CO_OCCURS edges, ${conceptDegree.size} concepts scored` });
+        ctx.onProgress?.({
+            phase: 'contextual-proximity',
+            message: `${edges.length} CO_OCCURS edges, ${conceptDegree.size} concepts scored`,
+        });
         return { coOccursEdges: edges.length, conceptsScored: conceptDegree.size };
     },
 };

package/dist/src/pipeline/phases/contextual-proximity.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/phases/cross-file.d.ts

@@ -1,5 +1,5 @@
-import type { PipelinePhase } from '../types.js';
 import type { MonographEdge } from '../../types.js';
+import type { PipelinePhase } from '../types.js';
 export interface CrossFileOutput {
     resolvedEdges: MonographEdge[];
 }

package/dist/src/pipeline/phases/cross-file.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cross-file.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/cross-file.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAEpD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAKjD,MAAM,WAAW,eAAe;IAC9B,aAAa,EAAE,aAAa,EAAE,CAAC;CAChC;AAWD,eAAO,MAAM,cAAc,EAAE,aAAa,CAAC,eAAe,CA4FzD,CAAC"}

package/dist/src/pipeline/phases/cross-file.js

@@ -1,8 +1,8 @@
-import { readFileSync } from 'fs';
-import { join } from 'path';
-import { makeId, CONFIDENCE_SCORE } from '../../types.js';
+import { readFileSync } from 'node:fs';
+import { join } from 'node:path';
 import { insertEdges } from '../../storage/edge-store.js';
-import { resolveModuleSpecifier, buildWorkspacePackageMap } from './scope-resolution.js';
+import { CONFIDENCE_SCORE, makeId } from '../../types.js';
+import { buildWorkspacePackageMap, resolveModuleSpecifier } from './scope-resolution.js';
 // Mirrors parsers/extractor.ts's re-export detection regex — used here to recover
 // the ORIGINAL specifier string behind a RE_EXPORTS edge's mangled placeholder id
 // (makeId('import', specifier) is lossy: '/' and '.' are collapsed to '_', so the

package/dist/src/pipeline/phases/cross-file.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/phases/docs-parse.d.ts

@@ -1,5 +1,5 @@
-import type { PipelinePhase } from '../types.js';
 import type { MonographNode } from '../../types.js';
+import type { PipelinePhase } from '../types.js';
 export interface DocsParseOutput {
     sectionNodes: MonographNode[];
     docFiles: number;

package/dist/src/pipeline/phases/docs-parse.d.ts.map

@@ -1 +1 @@
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