@monoes/monograph 1.5.8 → 1.6.0

package/dist/src/pipeline/phases/orm.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/phases/parse.d.ts

@@ -1,5 +1,5 @@
+import type { MonographEdge, MonographNode } from '../../types.js';
 import type { PipelinePhase } from '../types.js';
-import type { MonographNode, MonographEdge } from '../../types.js';
 export interface ParseOutput {
     symbolNodes: MonographNode[];
     allEdges: MonographEdge[];

package/dist/src/pipeline/phases/parse.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"parse.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/parse.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAClE,OAAO,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAQnE,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,aAAa,EAAE,CAAC;IAC7B,QAAQ,EAAE,aAAa,EAAE,CAAC;IAC1B,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,YAAY,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAClC,UAAU,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;CAC9C;AAED,eAAO,MAAM,UAAU,EAAE,aAAa,CAAC,WAAW,CAmKjD,CAAC;AAEF,wBAAgB,uBAAuB,CACrC,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,WAAW,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,CAAC,CAU7E;AAED,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,OAAO,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,CAmB9E"}
+{"version":3,"file":"parse.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/parse.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AACnE,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAIjD,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,aAAa,EAAE,CAAC;IAC7B,QAAQ,EAAE,aAAa,EAAE,CAAC;IAC1B,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,YAAY,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAClC,UAAU,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;CAC9C;AAED,eAAO,MAAM,UAAU,EAAE,aAAa,CAAC,WAAW,CAoLjD,CAAC;AAEF,wBAAgB,uBAAuB,CACrC,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,WAAW,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,CAAC,CAU7E;AAED,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,OAAO,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,CAmB9E"}

package/dist/src/pipeline/phases/parse.js

@@ -1,10 +1,10 @@
-import { readFileSync, statSync } from 'fs';
-import { extname, join } from 'path';
+import { readFileSync, statSync } from 'node:fs';
+import { extname, join } from 'node:path';
+import { ExtractionCache } from '../../cache/extraction-cache.js';
 import { parseFile } from '../../parsers/loader.js';
-import { insertNodes, deleteNodesForFile } from '../../storage/node-store.js';
-import { insertEdges, deleteEdgesForFile } from '../../storage/edge-store.js';
+import { deleteEdgesForFile, insertEdges } from '../../storage/edge-store.js';
+import { deleteNodesForFile, insertNodes } from '../../storage/node-store.js';
 import { extractVariables, variableToNode } from './variables.js';
-import { ExtractionCache } from '../../cache/extraction-cache.js';
 export const parsePhase = {
     name: 'parse',
     deps: ['structure'],
@@ -83,7 +83,7 @@ export const parsePhase = {
                 }
                 if (['.ts', '.tsx', '.js', '.jsx'].includes(ext)) {
                     const varInfos = extractVariables(source, fileNode.filePath ?? '');
-                    fileSymbols.push(...varInfos.map(v => variableToNode(v)));
+                    fileSymbols.push(...varInfos.map((v) => variableToNode(v)));
                     const arrowFns = extractArrowFunctions(source, fileNode.filePath ?? '');
                     for (const fn of arrowFns) {
                         fileSymbols.push({
@@ -101,7 +101,9 @@ export const parsePhase = {
                     const fileHash = cache.hashContent(source);
                     cache.setDeferred(absPath, fileHash, fileSymbols, fileEdges);
                 }
-                catch { /* non-fatal */ }
+                catch {
+                    /* non-fatal */
+                }
                 const nodeStart = symbolNodes.length;
                 const edgeStart = allEdges.length;
                 symbolNodes.push(...fileSymbols);
@@ -117,7 +119,11 @@ export const parsePhase = {
             }
             processed++;
             if (processed % 50 === 0) {
-                ctx.onProgress?.({ phase: 'parse', filesProcessed: processed, totalFiles: fileNodes.length });
+                ctx.onProgress?.({
+                    phase: 'parse',
+                    filesProcessed: processed,
+                    totalFiles: fileNodes.length,
+                });
             }
         }
         cache.flush();
@@ -127,15 +133,11 @@ export const parsePhase = {
             // from the previous build (node IDs are deterministic from file_path + symbol).
             // On first build (no cache hits), freshNodes === symbolNodes, so the fresh
             // subset is never materialized — symbolNodes/allEdges are used directly.
-            const freshNodes = cacheHits > 0
-                ? freshNodeRanges.flatMap(([s, e]) => symbolNodes.slice(s, e))
-                : symbolNodes;
-            const freshEdges = cacheHits > 0
-                ? freshEdgeRanges.flatMap(([s, e]) => allEdges.slice(s, e))
-                : allEdges;
+            const freshNodes = cacheHits > 0 ? freshNodeRanges.flatMap(([s, e]) => symbolNodes.slice(s, e)) : symbolNodes;
+            const freshEdges = cacheHits > 0 ? freshEdgeRanges.flatMap(([s, e]) => allEdges.slice(s, e)) : allEdges;
             const nodesToInsert = freshNodes;
-            const knownIds = new Set(symbolNodes.map(n => n.id));
-            const edgesToInsert = freshEdges.filter(e => knownIds.has(e.targetId));
+            const knownIds = new Set(symbolNodes.map((n) => n.id));
+            const edgesToInsert = freshEdges.filter((e) => knownIds.has(e.targetId));
             // For every cache-miss file, purge its OLD node/edge set BEFORE inserting the
             // fresh parse results, inside the same transaction — otherwise a renamed or
             // removed symbol's old row would survive forever (INSERT OR REPLACE only
@@ -156,15 +158,25 @@ export const parsePhase = {
         }
         if (cacheHits > 0) {
             const freshNodeCount = freshNodeRanges.reduce((sum, [s, e]) => sum + (e - s), 0);
-            ctx.onProgress?.({ phase: 'parse', filesProcessed: processed, totalFiles: fileNodes.length,
-                message: `cache: ${cacheHits} hits, ${cacheMisses} misses (${freshNodeCount} nodes inserted)` });
+            ctx.onProgress?.({
+                phase: 'parse',
+                filesProcessed: processed,
+                totalFiles: fileNodes.length,
+                message: `cache: ${cacheHits} hits, ${cacheMisses} misses (${freshNodeCount} nodes inserted)`,
+            });
         }
-        return { symbolNodes, allEdges, parseErrors, fileContents, cacheStats: { hits: cacheHits, misses: cacheMisses } };
+        return {
+            symbolNodes,
+            allEdges,
+            parseErrors,
+            fileContents,
+            cacheStats: { hits: cacheHits, misses: cacheMisses },
+        };
     },
 };
 export function extractCsharpNamespaces(source, filePath) {
     const results = [];
-    const re = /^[ \t]*namespace\s+([\w.]+)\s*[\{;]/gm;
+    const re = /^[ \t]*namespace\s+([\w.]+)\s*[{;]/gm;
     let m;
     while ((m = re.exec(source)) !== null) {
         const charsBefore = source.slice(0, m.index);
@@ -184,7 +196,7 @@ export function extractArrowFunctions(source, filePath) {
         const lineNum = (charsBefore.match(/\n/g)?.length ?? 0) + 1;
         results.push({
             name: m[3],
-            isExported: !!(m[2]?.trim()),
+            isExported: !!m[2]?.trim(),
             line: lineNum,
             filePath,
         });

package/dist/src/pipeline/phases/parse.js.map

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package/dist/src/pipeline/phases/pdf-parse.d.ts

@@ -1,5 +1,5 @@
-import type { PipelinePhase } from '../types.js';
 import type { MonographNode } from '../../types.js';
+import type { PipelinePhase } from '../types.js';
 export interface PdfParseOutput {
     sectionNodes: MonographNode[];
     pdfFiles: number;

package/dist/src/pipeline/phases/pdf-parse.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pdf-parse.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/pdf-parse.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAClE,OAAO,KAAK,EAAE,aAAa,EAAiB,MAAM,gBAAgB,CAAC;AAWnE,MAAM,WAAW,cAAc;IAC7B,YAAY,EAAE,aAAa,EAAE,CAAC;IAC9B,QAAQ,EAAE,MAAM,CAAC;CAClB;AAqBD,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,cAAc,CA6FvD,CAAC"}
+{"version":3,"file":"pdf-parse.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/pdf-parse.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAiB,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAEnE,OAAO,KAAK,EAAmB,aAAa,EAAE,MAAM,aAAa,CAAC;AAgBlE,MAAM,WAAW,cAAc;IAC7B,YAAY,EAAE,aAAa,EAAE,CAAC;IAC9B,QAAQ,EAAE,MAAM,CAAC;CAClB;AAgCD,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,cAAc,CA8GvD,CAAC"}

package/dist/src/pipeline/phases/pdf-parse.js

@@ -1,14 +1,22 @@
-import { readFileSync, statSync, readdirSync } from 'fs';
-import { extname, basename, join, relative } from 'path';
-import { makeId, toNormLabel, CONFIDENCE_SCORE } from '../../types.js';
-import { insertNodes } from '../../storage/node-store.js';
+import { readdirSync, readFileSync, statSync } from 'node:fs';
+import { basename, extname, join, relative } from 'node:path';
 import { insertEdges } from '../../storage/edge-store.js';
+import { insertNodes } from '../../storage/node-store.js';
+import { CONFIDENCE_SCORE, makeId, toNormLabel } from '../../types.js';
 const IGNORE_DIRS = new Set([
-    'node_modules', '.git', 'dist', 'build', '__pycache__',
-    '.cache', 'coverage', '.monomind', 'vendor', 'target',
+    'node_modules',
+    '.git',
+    'dist',
+    'build',
+    '__pycache__',
+    '.cache',
+    'coverage',
+    '.monomind',
+    'vendor',
+    'target',
     '.worktrees',
 ]);
-function walkPdfs(dir, repoPath, ignore) {
+function walkPdfs(dir, _repoPath, ignore) {
     const extraIgnore = new Set(ignore);
     const results = [];
     function walk(d) {
@@ -95,17 +103,24 @@ export const pdfParsePhase = {
                 const title = `${docTitle} §${i + 1}`;
                 const sectionId = makeId('section', fileId, String(i));
                 const node = {
-                    id: sectionId, label: 'Section',
-                    name: title, normLabel: toNormLabel(title),
-                    filePath: rel, startLine: startChar, endLine: startChar + content.length,
+                    id: sectionId,
+                    label: 'Section',
+                    name: title,
+                    normLabel: toNormLabel(title),
+                    filePath: rel,
+                    startLine: startChar,
+                    endLine: startChar + content.length,
                     isExported: false,
                     properties: { level: 1, content: content.slice(0, 2000), source: 'pdf', chunk: i },
                 };
                 sectionNodes.push(node);
                 allEdges.push({
                     id: makeId(fileId, sectionId, 'defines'),
-                    sourceId: fileId, targetId: sectionId,
-                    relation: 'DEFINES', confidence: 'EXTRACTED', confidenceScore: CONFIDENCE_SCORE.EXTRACTED,
+                    sourceId: fileId,
+                    targetId: sectionId,
+                    relation: 'DEFINES',
+                    confidence: 'EXTRACTED',
+                    confidenceScore: CONFIDENCE_SCORE.EXTRACTED,
                 });
             }
         }
@@ -115,18 +130,24 @@ export const pdfParsePhase = {
             for (const edge of allEdges) {
                 if (!seenFileIds.has(edge.sourceId)) {
                     seenFileIds.add(edge.sourceId);
-                    const relPath = sectionNodes.find(n => n.id === edge.targetId)?.filePath ?? '';
+                    const relPath = sectionNodes.find((n) => n.id === edge.targetId)?.filePath ?? '';
                     fileNodes.push({
-                        id: edge.sourceId, label: 'File',
-                        name: basename(relPath), normLabel: toNormLabel(basename(relPath)),
-                        filePath: relPath, isExported: false,
+                        id: edge.sourceId,
+                        label: 'File',
+                        name: basename(relPath),
+                        normLabel: toNormLabel(basename(relPath)),
+                        filePath: relPath,
+                        isExported: false,
                     });
                 }
             }
             insertNodes(ctx.db, [...fileNodes, ...sectionNodes]);
             insertEdges(ctx.db, allEdges);
         }
-        ctx.onProgress?.({ phase: 'pdf-parse', message: `Parsed ${pdfPaths.length} PDF files → ${sectionNodes.length} chunks` });
+        ctx.onProgress?.({
+            phase: 'pdf-parse',
+            message: `Parsed ${pdfPaths.length} PDF files → ${sectionNodes.length} chunks`,
+        });
         return { sectionNodes, pdfFiles: pdfPaths.length };
     },
 };

package/dist/src/pipeline/phases/pdf-parse.js.map

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package/dist/src/pipeline/phases/processes.d.ts.map

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+{"version":3,"file":"processes.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/processes.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAIjD,MAAM,WAAW,UAAU;IACzB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,eAAe;IAC9B,aAAa,EAAE;QACb,SAAS,EAAE,UAAU,EAAE,CAAC;QACxB,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACjC,KAAK,EAAE;YAAE,cAAc,EAAE,MAAM,CAAC;YAAC,UAAU,EAAE,MAAM,CAAA;SAAE,CAAC;KACvD,CAAC;CACH;AAyHD,eAAO,MAAM,cAAc,EAAE,aAAa,CAAC,eAAe,CA4GzD,CAAC"}

package/dist/src/pipeline/phases/processes.js

@@ -1,7 +1,7 @@
-import { basename, extname } from 'path';
-import { makeId, toNormLabel } from '../../types.js';
-import { insertNodes } from '../../storage/node-store.js';
+import { basename, extname } from 'node:path';
 import { insertEdges } from '../../storage/edge-store.js';
+import { insertNodes } from '../../storage/node-store.js';
+import { makeId, toNormLabel } from '../../types.js';
 // ── Entry-point file names that boost score ───────────────────────────────────
 const ENTRY_FILENAMES = new Set(['index', 'main', 'cli', 'server', 'app', 'cmd']);
 // ── BFS call-chain traversal ──────────────────────────────────────────────────

package/dist/src/pipeline/phases/processes.js.map

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package/dist/src/pipeline/phases/re-export-propagation.d.ts

@@ -1,5 +1,5 @@
-import type { PipelinePhase } from '../types.js';
 import type Database from 'better-sqlite3';
+import type { PipelinePhase } from '../types.js';
 export interface ReExportPropagationOutput {
     propagated: number;
 }

package/dist/src/pipeline/phases/re-export-propagation.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"re-export-propagation.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/re-export-propagation.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAE3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAEjD,MAAM,WAAW,yBAAyB;IACxC,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,kBAAkB,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,yBAAyB,CA4InF;AAED,eAAO,MAAM,wBAAwB,EAAE,aAAa,CAAC,yBAAyB,CAY7E,CAAC"}

package/dist/src/pipeline/phases/re-export-propagation.js

@@ -1,4 +1,4 @@
-import { makeId, CONFIDENCE_SCORE } from '../../types.js';
+import { CONFIDENCE_SCORE, makeId } from '../../types.js';
 /**
  * Fixed-point re-export chain propagation.
  *
@@ -14,7 +14,9 @@ import { makeId, CONFIDENCE_SCORE } from '../../types.js';
  */
 export function propagateReExports(db) {
     // Collect all RE_EXPORTS edges (barrel file → re-exported file), keyed by File node IDs
-    const reExportEdges = db.prepare(`SELECT source_id, target_id FROM edges WHERE relation = 'RE_EXPORTS'`).all();
+    const reExportEdges = db
+        .prepare(`SELECT source_id, target_id FROM edges WHERE relation = 'RE_EXPORTS'`)
+        .all();
     if (reExportEdges.length === 0)
         return { propagated: 0 };
     // Build map: barrelFileId → Set<reExportedFileId>
@@ -22,20 +24,24 @@ export function propagateReExports(db) {
     for (const e of reExportEdges) {
         if (!barrelExports.has(e.source_id))
             barrelExports.set(e.source_id, new Set());
-        barrelExports.get(e.source_id).add(e.target_id);
+        barrelExports.get(e.source_id)?.add(e.target_id);
     }
     // Determine which File nodes are "reached" — either directly imported (via their File node ID)
     // or their symbols are imported (join through nodes.file_path).
     // We build a set of reached file paths to handle both IMPORTS→symbol and IMPORTS→File cases.
-    const reachedFilePaths = new Set(db.prepare(`
+    const reachedFilePaths = new Set(db
+        .prepare(`
       SELECT DISTINCT n.file_path
       FROM edges e
       JOIN nodes n ON n.id = e.target_id
       WHERE e.relation = 'IMPORTS'
         AND n.file_path IS NOT NULL
-    `).all().map(r => r.file_path));
+    `)
+        .all().map((r) => r.file_path));
     // Also map File node ID → file_path for barrel lookup
-    const fileIdToPath = new Map(db.prepare(`SELECT id, file_path FROM nodes WHERE label = 'File' AND file_path IS NOT NULL`).all().map(r => [r.id, r.file_path]));
+    const fileIdToPath = new Map(db
+        .prepare(`SELECT id, file_path FROM nodes WHERE label = 'File' AND file_path IS NOT NULL`)
+        .all().map((r) => [r.id, r.file_path]));
     // Map file_path → File node ID for inserting synthetic IMPORTS edges
     const filePathToId = new Map();
     for (const [id, path] of fileIdToPath)
@@ -54,17 +60,18 @@ export function propagateReExports(db) {
     });
     // ── Preload: avoid per-iteration DB queries inside the BFS while-loop ─────────
     // nodeId → file_path for all nodes (used to resolve importer file paths)
-    const nodeIdToFilePath = new Map(db.prepare(`SELECT id, file_path FROM nodes WHERE file_path IS NOT NULL`)
-        .all().map(r => [r.id, r.file_path]));
+    const nodeIdToFilePath = new Map(db.prepare(`SELECT id, file_path FROM nodes WHERE file_path IS NOT NULL`).all().map((r) => [r.id, r.file_path]));
     // barrelFilePath → Set<importerNodeId>: who IMPORTS any node from each barrel file
     // Load all IMPORTS edges once and group by target file_path
-    const allImportEdges = db.prepare(`
+    const allImportEdges = db
+        .prepare(`
     SELECT e.source_id, n.file_path AS target_file_path
     FROM edges e
     JOIN nodes n ON n.id = e.target_id
     WHERE e.relation = 'IMPORTS'
       AND n.file_path IS NOT NULL
-  `).all();
+  `)
+        .all();
     const barrelImporters = new Map();
     for (const row of allImportEdges) {
         let s = barrelImporters.get(row.target_file_path);
@@ -121,7 +128,10 @@ export const reExportPropagationPhase = {
         if (!ctx.db)
             return { propagated: 0 };
         const result = propagateReExports(ctx.db);
-        ctx.onProgress?.({ phase: 're-export-propagation', message: `Propagated ${result.propagated} re-export edges` });
+        ctx.onProgress?.({
+            phase: 're-export-propagation',
+            message: `Propagated ${result.propagated} re-export edges`,
+        });
         return result;
     },
 };

package/dist/src/pipeline/phases/re-export-propagation.js.map

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package/dist/src/pipeline/phases/reachability.d.ts.map

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