@monoes/monograph 1.5.5 → 1.5.7

package/src/storage/schema.ts

@@ -1,171 +0,0 @@
-export const CREATE_NODES = `
-CREATE TABLE IF NOT EXISTS nodes (
-  id TEXT PRIMARY KEY,
-  label TEXT NOT NULL,
-  name TEXT NOT NULL,
-  norm_label TEXT NOT NULL DEFAULT '',
-  file_path TEXT,
-  start_line INTEGER,
-  end_line INTEGER,
-  community_id INTEGER,
-  is_exported INTEGER NOT NULL DEFAULT 0,
-  language TEXT,
-  properties TEXT,
-  embedding TEXT
-)`;
-
-export const CREATE_EDGES = `
-CREATE TABLE IF NOT EXISTS edges (
-  id TEXT PRIMARY KEY,
-  source_id TEXT NOT NULL,
-  target_id TEXT NOT NULL,
-  relation TEXT NOT NULL,
-  confidence TEXT NOT NULL DEFAULT 'EXTRACTED',
-  confidence_score REAL NOT NULL DEFAULT 1.0,
-  weight REAL NOT NULL DEFAULT 1.0,
-  reason TEXT,
-  evidence TEXT,
-  FOREIGN KEY (source_id) REFERENCES nodes(id),
-  FOREIGN KEY (target_id) REFERENCES nodes(id)
-)`;
-
-export const CREATE_COMMUNITIES = `
-CREATE TABLE IF NOT EXISTS communities (
-  id INTEGER PRIMARY KEY,
-  label TEXT,
-  size INTEGER NOT NULL DEFAULT 0,
-  cohesion_score REAL NOT NULL DEFAULT 0.0
-)`;
-
-export const CREATE_INDEX_META = `
-CREATE TABLE IF NOT EXISTS index_meta (
-  key TEXT PRIMARY KEY,
-  value TEXT NOT NULL
-)`;
-
-export const CREATE_NODES_FTS = `
-CREATE VIRTUAL TABLE IF NOT EXISTS nodes_fts USING fts5(
-  id UNINDEXED,
-  name,
-  norm_label,
-  file_path,
-  label UNINDEXED,
-  content='nodes',
-  content_rowid='rowid',
-  tokenize='trigram'
-)`;
-
-export const CREATE_EMBEDDINGS = `
-CREATE TABLE IF NOT EXISTS embeddings (
-  node_id TEXT PRIMARY KEY,
-  vector BLOB NOT NULL
-)`;
-
-export const CREATE_WIKI_PAGES = `
-CREATE TABLE IF NOT EXISTS wiki_pages (
-  community_id TEXT PRIMARY KEY,
-  content TEXT NOT NULL,
-  generated_at TEXT NOT NULL
-)`;
-
-export const CREATE_INDEXES = [
-  `CREATE INDEX IF NOT EXISTS idx_nodes_file ON nodes(file_path)`,
-  `CREATE INDEX IF NOT EXISTS idx_nodes_label ON nodes(label)`,
-  `CREATE INDEX IF NOT EXISTS idx_nodes_norm ON nodes(norm_label)`,
-  `CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes(name)`,
-  `CREATE INDEX IF NOT EXISTS idx_nodes_name_nocase ON nodes(name COLLATE NOCASE)`,
-  `CREATE INDEX IF NOT EXISTS idx_nodes_name_label ON nodes(name, label) WHERE file_path IS NOT NULL`,
-  `CREATE INDEX IF NOT EXISTS idx_edges_source ON edges(source_id)`,
-  `CREATE INDEX IF NOT EXISTS idx_edges_target ON edges(target_id)`,
-  `CREATE INDEX IF NOT EXISTS idx_edges_relation ON edges(relation)`,
-  `CREATE INDEX IF NOT EXISTS idx_edges_confidence ON edges(confidence)`,
-  `CREATE INDEX IF NOT EXISTS idx_edges_calls_lookup ON edges(source_id, target_id, relation) WHERE relation = 'CALLS'`,
-];
-
-export const CREATE_NODE_PROPERTIES = `
-CREATE TABLE IF NOT EXISTS node_properties (
-  ident TEXT PRIMARY KEY,
-  type TEXT NOT NULL CHECK(type IN ('text','number','boolean','date','node-ref','closed')),
-  cardinality TEXT NOT NULL DEFAULT 'one' CHECK(cardinality IN ('one','many')),
-  view_context TEXT NOT NULL DEFAULT 'all' CHECK(view_context IN ('all','graph','query','never')),
-  closed_values TEXT,
-  description TEXT,
-  queryable INTEGER NOT NULL DEFAULT 1
-)`;
-
-export const SEED_NODE_PROPERTIES = `
-INSERT OR IGNORE INTO node_properties (ident, type, cardinality, view_context, description, queryable) VALUES
-  ('ua_type',       'closed',  'one',  'query', 'Understand-Anything node type',        1),
-  ('summary',       'text',    'one',  'all',   'LLM-generated description',            1),
-  ('tags',          'text',    'many', 'all',   'Semantic tags from analysis',          1),
-  ('complexity',    'closed',  'one',  'query', 'Code complexity rating',               1),
-  ('layer',         'closed',  'one',  'graph', 'Architectural layer (community name)', 1),
-  ('community_id',  'number',  'one',  'query', 'Community cluster id',                 1),
-  ('language',      'text',    'one',  'query', 'Programming language',                 1),
-  ('is_exported',   'boolean', 'one',  'query', 'Whether symbol is exported',           1)`;
-
-export const CREATE_SUPPRESSIONS = `
-CREATE TABLE IF NOT EXISTS suppressions (
-  id TEXT PRIMARY KEY,
-  file_path TEXT NOT NULL,
-  line INTEGER NOT NULL DEFAULT 0,
-  rule TEXT NOT NULL,
-  added_at TEXT NOT NULL,
-  last_seen_at TEXT
-)`;
-
-export const CREATE_FILE_CACHE = `
-  CREATE TABLE IF NOT EXISTS file_cache (
-    file_path TEXT PRIMARY KEY,
-    content_hash TEXT NOT NULL,
-    last_parsed INTEGER NOT NULL,
-    node_count INTEGER NOT NULL DEFAULT 0,
-    edge_count INTEGER NOT NULL DEFAULT 0
-  )
-`;
-
-export const CREATE_AGENT_INTERACTIONS = `
-CREATE TABLE IF NOT EXISTS agent_interactions (
-  id TEXT PRIMARY KEY,
-  session_id TEXT NOT NULL,
-  org_name TEXT,
-  agent_type TEXT NOT NULL,
-  parent_agent TEXT,
-  prompt_summary TEXT,
-  result_summary TEXT,
-  tokens_in INTEGER NOT NULL DEFAULT 0,
-  tokens_out INTEGER NOT NULL DEFAULT 0,
-  cost_usd REAL NOT NULL DEFAULT 0,
-  success INTEGER NOT NULL DEFAULT 1,
-  duration_ms INTEGER NOT NULL DEFAULT 0,
-  timestamp INTEGER NOT NULL,
-  metadata TEXT
-)`;
-
-export const CREATE_AGENT_INTERACTIONS_IDX = `
-CREATE INDEX IF NOT EXISTS idx_agent_interactions_session ON agent_interactions(session_id)`;
-
-export const CREATE_AGENT_INTERACTIONS_ORG_IDX = `
-CREATE INDEX IF NOT EXISTS idx_agent_interactions_org ON agent_interactions(org_name)`;
-
-export const CREATE_AGENT_INTERACTIONS_TYPE_IDX = `
-CREATE INDEX IF NOT EXISTS idx_agent_interactions_type ON agent_interactions(agent_type)`;
-
-export const CREATE_AGENT_INTERACTIONS_TS_IDX = `
-CREATE INDEX IF NOT EXISTS idx_agent_interactions_ts ON agent_interactions(timestamp)`;
-
-export const FTS_SYNC_TRIGGERS = `
-CREATE TRIGGER IF NOT EXISTS nodes_fts_insert AFTER INSERT ON nodes BEGIN
-  INSERT INTO nodes_fts(rowid, id, name, norm_label, file_path, label)
-  VALUES (new.rowid, new.id, new.name, new.norm_label, new.file_path, new.label);
-END;
-CREATE TRIGGER IF NOT EXISTS nodes_fts_delete AFTER DELETE ON nodes BEGIN
-  INSERT INTO nodes_fts(nodes_fts, rowid, id, name, norm_label, file_path, label)
-  VALUES ('delete', old.rowid, old.id, old.name, old.norm_label, old.file_path, old.label);
-END;
-CREATE TRIGGER IF NOT EXISTS nodes_fts_update AFTER UPDATE ON nodes BEGIN
-  INSERT INTO nodes_fts(nodes_fts, rowid, id, name, norm_label, file_path, label)
-  VALUES ('delete', old.rowid, old.id, old.name, old.norm_label, old.file_path, old.label);
-  INSERT INTO nodes_fts(rowid, id, name, norm_label, file_path, label)
-  VALUES (new.rowid, new.id, new.name, new.norm_label, new.file_path, new.label);
-END`;

package/src/storage/suppressions.ts

@@ -1,145 +0,0 @@
-import type Database from 'better-sqlite3';
-import { randomUUID } from 'crypto';
-
-export interface Suppression {
-  id: string;
-  filePath: string;
-  line: number;     // 0 = file-wide
-  rule: string;
-  addedAt: string;
-  lastSeenAt?: string;
-}
-
-export interface StaleSuppression extends Suppression {
-  reason: string;  // 'issue_resolved' | 'file_deleted'
-}
-
-// Add a suppression
-export function addSuppression(
-  db: Database.Database,
-  filePath: string,
-  line: number,
-  rule: string,
-): Suppression {
-  const id = randomUUID();
-  const addedAt = new Date().toISOString();
-
-  db.prepare(`
-    INSERT INTO suppressions (id, file_path, line, rule, added_at, last_seen_at)
-    VALUES (?, ?, ?, ?, ?, NULL)
-  `).run(id, filePath, line, rule, addedAt);
-
-  return { id, filePath, line, rule, addedAt };
-}
-
-// List all suppressions (optionally filter by rule or file)
-export function listSuppressions(
-  db: Database.Database,
-  filePath?: string,
-  rule?: string,
-): Suppression[] {
-  let sql = `SELECT id, file_path, line, rule, added_at, last_seen_at FROM suppressions WHERE 1=1`;
-  const params: unknown[] = [];
-
-  if (filePath) {
-    sql += ` AND file_path = ?`;
-    params.push(filePath);
-  }
-  if (rule) {
-    sql += ` AND rule = ?`;
-    params.push(rule);
-  }
-  sql += ` ORDER BY added_at DESC`;
-
-  const rows = db.prepare(sql).all(...params) as {
-    id: string;
-    file_path: string;
-    line: number;
-    rule: string;
-    added_at: string;
-    last_seen_at: string | null;
-  }[];
-
-  return rows.map(r => ({
-    id: r.id,
-    filePath: r.file_path,
-    line: r.line,
-    rule: r.rule,
-    addedAt: r.added_at,
-    ...(r.last_seen_at != null ? { lastSeenAt: r.last_seen_at } : {}),
-  }));
-}
-
-// Remove a suppression
-export function removeSuppression(db: Database.Database, id: string): void {
-  db.prepare(`DELETE FROM suppressions WHERE id = ?`).run(id);
-}
-
-// Check if a finding is suppressed
-// A suppression with line=0 is file-wide and matches any line for the same file+rule
-export function isSuppressed(
-  db: Database.Database,
-  filePath: string,
-  line: number,
-  rule: string,
-): Suppression | null {
-  const row = db.prepare(`
-    SELECT id, file_path, line, rule, added_at, last_seen_at
-    FROM suppressions
-    WHERE file_path = ? AND rule = ? AND (line = 0 OR line = ?)
-    LIMIT 1
-  `).get(filePath, rule, line) as {
-    id: string;
-    file_path: string;
-    line: number;
-    rule: string;
-    added_at: string;
-    last_seen_at: string | null;
-  } | undefined;
-
-  if (!row) return null;
-
-  return {
-    id: row.id,
-    filePath: row.file_path,
-    line: row.line,
-    rule: row.rule,
-    addedAt: row.added_at,
-    ...(row.last_seen_at != null ? { lastSeenAt: row.last_seen_at } : {}),
-  };
-}
-
-// Find stale suppressions
-// A suppression is stale if:
-//   - the file no longer exists in the graph (reason: 'file_deleted')
-//   - the file exists but no active finding matches file+rule (reason: 'issue_resolved')
-export function findStaleSuppressions(
-  db: Database.Database,
-  activeFindings: Array<{ filePath: string; rule: string }>,
-): StaleSuppression[] {
-  const suppressions = listSuppressions(db);
-  if (suppressions.length === 0) return [];
-
-  // Build a set of all file paths in the graph
-  const graphFiles = new Set<string>(
-    (db.prepare(`SELECT DISTINCT file_path FROM nodes WHERE file_path IS NOT NULL`).all() as { file_path: string }[])
-      .map(r => r.file_path),
-  );
-
-  // Build a set of active finding keys: "filePath::rule"
-  const activeFindingKeys = new Set<string>(
-    activeFindings.map(f => `${f.filePath}::${f.rule}`),
-  );
-
-  const stale: StaleSuppression[] = [];
-
-  for (const s of suppressions) {
-    if (!graphFiles.has(s.filePath)) {
-      stale.push({ ...s, reason: 'file_deleted' });
-    } else if (!activeFindingKeys.has(`${s.filePath}::${s.rule}`)) {
-      stale.push({ ...s, reason: 'issue_resolved' });
-    }
-  }
-
-  return stale;
-}

package/src/storage/unlinked-refs.ts

@@ -1,117 +0,0 @@
-import type Database from 'better-sqlite3';
-
-export interface UnlinkedReference {
-  sourceId: string;
-  sourceName: string;
-  sourceFilePath: string | null;
-  sourceLabel: string;
-  targetName: string;   // the symbol that was mentioned
-  mentionContext: string | null; // snippet of where it was mentioned (from properties.summary)
-  confidence: 'high' | 'medium' | 'low';
-}
-
-/**
- * Find nodes that mention a target symbol by name in their metadata
- * (summary, file_path, norm_label) but have no explicit edge to any node
- * with that name. These are "mentioned but not linked" — latent coupling.
- *
- * @param db - open monograph database
- * @param targetName - symbol name to search for (e.g. "UserService")
- * @param options.limit - max results (default 50)
- * @param options.excludeSourceId - skip this node id (avoid self-match)
- */
-export function findUnlinkedReferences(
-  db: Database.Database,
-  targetName: string,
-  options: { limit?: number; excludeSourceId?: string } = {},
-): UnlinkedReference[] {
-  const limit = options.limit ?? 50;
-  const excludeSourceId = options.excludeSourceId ?? '';
-  const pattern = `%${targetName}%`;
-
-  // Step 1: Find all node IDs that already have an explicit edge to any node
-  // whose name matches targetName — these are "already linked" and excluded.
-  const linkedRows = db.prepare(`
-    SELECT DISTINCT e.source_id FROM edges e
-    JOIN nodes n ON n.id = e.target_id
-    WHERE n.name = ?
-  `).all(targetName) as { source_id: string }[];
-
-  const linkedIds = new Set(linkedRows.map(r => r.source_id));
-
-  // Step 2: Find nodes that mention targetName in name, norm_label, or
-  // properties JSON — but are NOT in the linked set and not self.
-  const rows = db.prepare(`
-    SELECT n.id, n.name, n.file_path, n.label, n.properties
-    FROM nodes n
-    WHERE (
-      n.name LIKE ? OR
-      n.norm_label LIKE ? OR
-      (n.properties IS NOT NULL AND n.properties LIKE ?)
-    )
-    AND n.name != ?
-    LIMIT ?
-  `).all(pattern, pattern, pattern, targetName, limit * 4) as Array<{
-    id: string;
-    name: string;
-    file_path: string | null;
-    label: string;
-    properties: string | null;
-  }>;
-
-  const results: UnlinkedReference[] = [];
-
-  for (const row of rows) {
-    // Skip nodes that already have an explicit edge to the target
-    if (linkedIds.has(row.id)) continue;
-    // Skip the excluded node (e.g. the target node itself)
-    if (excludeSourceId && row.id === excludeSourceId) continue;
-
-    // Determine confidence and extract mention context
-    let confidence: 'high' | 'medium' | 'low';
-    let mentionContext: string | null = null;
-
-    if (row.name.includes(targetName)) {
-      // Target name appears in the symbol's own name
-      confidence = 'high';
-    } else if (row.file_path !== null && row.file_path.includes(targetName)) {
-      // Appears in the file path
-      confidence = 'medium';
-    } else {
-      // Only in properties.summary
-      confidence = 'low';
-    }
-
-    // Extract a 100-char context window from properties.summary if available
-    if (row.properties !== null) {
-      try {
-        const props = JSON.parse(row.properties) as Record<string, unknown>;
-        const summary = typeof props['summary'] === 'string' ? props['summary'] : null;
-        if (summary !== null && summary.includes(targetName)) {
-          const idx = summary.indexOf(targetName);
-          const start = Math.max(0, idx - 50);
-          const end = Math.min(summary.length, idx + targetName.length + 50);
-          mentionContext = summary.slice(start, end);
-          // Refine confidence: if we previously set 'low' due to no name/path match,
-          // and properties match confirms it, keep 'low'. Otherwise stay as-is.
-        }
-      } catch {
-        // Malformed JSON — skip
-      }
-    }
-
-    results.push({
-      sourceId: row.id,
-      sourceName: row.name,
-      sourceFilePath: row.file_path,
-      sourceLabel: row.label,
-      targetName,
-      mentionContext,
-      confidence,
-    });
-
-    if (results.length >= limit) break;
-  }
-
-  return results;
-}

package/src/types.ts

@@ -1,197 +0,0 @@
-// ── Node labels ───────────────────────────────────────────────────────────────
-
-export type NodeLabel =
-  | 'File' | 'Folder' | 'Function' | 'Class' | 'Method' | 'Interface'
-  | 'Variable' | 'Struct' | 'Enum' | 'Macro' | 'Typedef' | 'Union'
-  | 'Namespace' | 'Trait' | 'Impl' | 'TypeAlias' | 'Const' | 'Static'
-  | 'Property' | 'Record' | 'Delegate' | 'Annotation' | 'Constructor'
-  | 'Template' | 'Module' | 'Process' | 'Route' | 'Community' | 'Concept'
-  | 'Section' | 'Document' | 'Tool' | 'Entity' | 'Field';
-
-export const SYMBOL_NODE_LABELS = new Set<NodeLabel>([
-  'Function', 'Class', 'Method', 'Interface', 'Variable', 'Struct', 'Enum',
-  'Macro', 'Typedef', 'Union', 'Namespace', 'Trait', 'Impl', 'TypeAlias',
-  'Const', 'Static', 'Property', 'Record', 'Delegate', 'Annotation',
-  'Constructor', 'Template', 'Module',
-]);
-
-// ── Edge relations ────────────────────────────────────────────────────────────
-
-export type EdgeRelation =
-  | 'CONTAINS' | 'DEFINES' | 'CALLS' | 'IMPORTS' | 'RE_EXPORTS' | 'EXTENDS' | 'IMPLEMENTS'
-  | 'HAS_METHOD' | 'HAS_PROPERTY' | 'ACCESSES' | 'METHOD_OVERRIDES'
-  | 'METHOD_IMPLEMENTS' | 'MEMBER_OF' | 'STEP_IN_PROCESS' | 'HANDLES_ROUTE'
-  | 'FETCHES' | 'HANDLES_TOOL' | 'ENTRY_POINT_OF' | 'WRAPS' | 'QUERIES'
-  | 'REFERENCES' | 'PARENT_SECTION' | 'TAGGED_AS' | 'HAS_FIELD'
-  // Doc KG — contextual proximity
-  | 'CO_OCCURS'
-  // Doc KG — LLM-inferred semantic relations
-  | 'DESCRIBES' | 'CAUSES' | 'CONTRASTS_WITH' | 'PART_OF' | 'RELATED_TO' | 'USES' | 'STRUCTURALLY_SIMILAR';
-
-// ── Confidence ────────────────────────────────────────────────────────────────
-
-export type EdgeConfidence = 'EXTRACTED' | 'INFERRED' | 'AMBIGUOUS';
-
-export const CONFIDENCE_SCORE: Record<EdgeConfidence, number> = {
-  EXTRACTED: 1.0,
-  INFERRED: 0.5,
-  AMBIGUOUS: 0.2,
-};
-
-// ── Nodes ─────────────────────────────────────────────────────────────────────
-
-export interface MonographNode {
-  id: string;
-  label: NodeLabel;
-  name: string;
-  normLabel: string;
-  filePath?: string;
-  startLine?: number;
-  endLine?: number;
-  communityId?: number;
-  isExported: boolean;
-  language?: string;
-  reachabilityRole?: 'runtime' | 'test' | 'support' | 'unreachable';
-  properties?: Record<string, unknown>;
-}
-
-// ── Evidence ──────────────────────────────────────────────────────────────────
-
-export interface EvidenceEntry {
-  kind: string;      // e.g., 'import', 'call', 'heuristic', 'inferred'
-  weight: number;    // 0-1
-  note?: string;     // human-readable explanation
-}
-
-// ── Edges ─────────────────────────────────────────────────────────────────────
-
-export interface MonographEdge {
-  id: string;
-  sourceId: string;
-  targetId: string;
-  relation: EdgeRelation;
-  confidence: EdgeConfidence;
-  confidenceScore: number;
-  weight?: number;
-  reason?: string;
-  evidence?: EvidenceEntry[];
-}
-
-// ── Communities ───────────────────────────────────────────────────────────────
-
-export interface MonographCommunity {
-  id: number;
-  label?: string;
-  size: number;
-  cohesionScore: number;
-}
-
-// ── God nodes ─────────────────────────────────────────────────────────────────
-
-export interface GodNode extends MonographNode {
-  degree: number;
-  inDegree: number;
-  outDegree: number;
-}
-
-// ── Complexity metrics ────────────────────────────────────────────────────────
-
-export interface ComplexityMetrics {
-  cyclomaticComplexity: number;
-  cognitiveComplexity: number;
-  linesOfCode: number;
-  paramCount: number;
-}
-
-export interface CrapScore {
-  cc: number;
-  coverage: number;   // 0-1
-  score: number;      // CC² × (1-coverage)³ + CC
-  risk: 'low' | 'medium' | 'high' | 'critical';
-}
-
-// ── Surprising connections ────────────────────────────────────────────────────
-
-export interface SurprisingConnection {
-  edge: MonographEdge;
-  score: number;
-  reasons: string[];
-}
-
-// ── Suggested questions ───────────────────────────────────────────────────────
-
-export type SuggestedQuestion =
-  | { type: 'ambiguous_edge'; edge: MonographEdge; reason: string }
-  | { type: 'bridge_node'; node: MonographNode; commA: number; commB: number }
-  | { type: 'verify_inferred'; edge: MonographEdge; inferredFrom: string }
-  | { type: 'isolated_nodes'; nodes: MonographNode[]; reason: string }
-  | { type: 'low_cohesion'; community: MonographCommunity }
-  | { type: 'no_signal'; edge: MonographEdge; reason: string }
-  | { type: 'thin_community'; communityId: number; memberCount: number; reason: string };
-
-// ── Finding actions (structured remediation steps) ────────────────────────────
-
-export type FindingActionType =
-  | 'investigate'     // read/understand the file
-  | 'refactor'        // reduce complexity or coupling
-  | 'delete'          // safe to remove
-  | 'add-test'        // add test coverage
-  | 'add-import'      // add missing import edge
-  | 'extract'         // extract to separate module
-  | 'review'          // human review required
-  | 'add-edge';       // add explicit graph relationship
-
-export interface FindingAction {
-  type: FindingActionType;
-  file?: string;       // target file path
-  symbol?: string;     // specific symbol/export name
-  description: string; // human-readable instruction
-  confidence: 'high' | 'medium' | 'low';
-}
-
-export interface AnnotatedFinding {
-  title: string;
-  severity: 'error' | 'warning' | 'info';
-  nodeId?: string;
-  nodeName?: string;
-  filePath?: string | null;
-  introduced?: boolean;
-  actions: FindingAction[];
-}
-
-// ── ID generation ─────────────────────────────────────────────────────────────
-
-export function makeId(...parts: string[]): string {
-  return parts
-    .join('_')
-    .replace(/[^a-z0-9_]/gi, '_')
-    .replace(/^_+|_+$/g, '')
-    .toLowerCase();
-}
-
-// ── Norm label ────────────────────────────────────────────────────────────────
-
-export function toNormLabel(name: string): string {
-  return name
-    .normalize('NFD')
-    .replace(/[̀-ͯ]/g, '')
-    .toLowerCase();
-}
-
-// ── Pipeline progress ─────────────────────────────────────────────────────────
-
-export interface PipelineProgress {
-  phase: string;
-  filesProcessed?: number;
-  totalFiles?: number;
-  message?: string;
-}
-
-// ── Errors ────────────────────────────────────────────────────────────────────
-
-export class MonographError extends Error {
-  constructor(message: string, public readonly cause?: unknown) {
-    super(message);
-    this.name = 'MonographError';
-  }
-}

package/src/validation/extraction-validator.ts

@@ -1,54 +0,0 @@
-import type { MonographNode, MonographEdge, EdgeConfidence, NodeLabel } from '../types.js';
-
-export interface ValidationResult {
-  valid: boolean;
-  errors: string[];
-}
-
-const VALID_LABELS = new Set<NodeLabel>([
-  'File', 'Folder', 'Function', 'Class', 'Method', 'Interface',
-  'Variable', 'Struct', 'Enum', 'Macro', 'Typedef', 'Union',
-  'Namespace', 'Trait', 'Impl', 'TypeAlias', 'Const', 'Static',
-  'Property', 'Record', 'Delegate', 'Annotation', 'Constructor',
-  'Template', 'Module', 'Process', 'Route', 'Community', 'Concept',
-  'Document', 'Tool', 'Entity', 'Field',
-]);
-
-const VALID_CONFIDENCES = new Set<EdgeConfidence>(['EXTRACTED', 'INFERRED', 'AMBIGUOUS']);
-
-export function validateExtraction(
-  nodes: MonographNode[],
-  edges: MonographEdge[],
-): ValidationResult {
-  const errors: string[] = [];
-  const nodeIds = new Set(nodes.map(n => n.id));
-
-  for (const n of nodes) {
-    if (!n.id) errors.push(`Node missing id: ${JSON.stringify(n.name)}`);
-    if (!n.name) errors.push(`Node ${n.id} missing name`);
-    if (!VALID_LABELS.has(n.label as NodeLabel)) {
-      errors.push(`Node ${n.id} has invalid label: ${n.label}`);
-    }
-    if (typeof n.isExported !== 'boolean') {
-      errors.push(`Node ${n.id}: isExported must be boolean`);
-    }
-  }
-
-  for (const e of edges) {
-    if (!e.id) errors.push(`Edge missing id`);
-    if (!nodeIds.has(e.sourceId)) {
-      errors.push(`Edge ${e.id}: sourceId '${e.sourceId}' references unknown node`);
-    }
-    if (!nodeIds.has(e.targetId)) {
-      errors.push(`Edge ${e.id}: targetId '${e.targetId}' references unknown node`);
-    }
-    if (!VALID_CONFIDENCES.has(e.confidence)) {
-      errors.push(`Edge ${e.id}: invalid confidence '${e.confidence}'`);
-    }
-    if (typeof e.confidenceScore !== 'number') {
-      errors.push(`Edge ${e.id}: confidenceScore must be number`);
-    }
-  }
-
-  return { valid: errors.length === 0, errors };
-}