@monoes/monograph 1.5.4 → 1.5.6

package/dist/src/pipeline/orchestrator.d.ts

@@ -7,4 +7,5 @@ export interface BuildOptions extends Partial<PipelineOptions> {
     incremental?: boolean;
 }
 export declare function buildAsync(repoPath: string, options?: BuildOptions): Promise<void>;
+export declare function buildIncrementalAsync(repoPath: string, changedAbsPaths: string[], options?: BuildOptions): Promise<void>;
 //# sourceMappingURL=orchestrator.d.ts.map

package/dist/src/pipeline/orchestrator.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"orchestrator.d.ts","sourceRoot":"","sources":["../../../src/pipeline/orchestrator.ts"],"names":[],"mappings":"AAyBA,OAAO,KAAK,EAAE,eAAe,EAAmB,MAAM,YAAY,CAAC;AAEnE,OAAO,KAAK,EAAE,gBAAgB,EAAqB,MAAM,aAAa,CAAC;AAavE,MAAM,WAAW,YAAa,SAAQ,OAAO,CAAC,eAAe,CAAC;IAC5D,UAAU,CAAC,EAAE,CAAC,CAAC,EAAE,gBAAgB,KAAK,IAAI,CAAC;IAC3C,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,oGAAoG;IACpG,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AA8BD,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CAe5F"}
+{"version":3,"file":"orchestrator.d.ts","sourceRoot":"","sources":["../../../src/pipeline/orchestrator.ts"],"names":[],"mappings":"AA0BA,OAAO,KAAK,EAAE,eAAe,EAAmB,MAAM,YAAY,CAAC;AAEnE,OAAO,KAAK,EAAgC,gBAAgB,EAAqB,MAAM,aAAa,CAAC;AAmBrG,MAAM,WAAW,YAAa,SAAQ,OAAO,CAAC,eAAe,CAAC;IAC5D,UAAU,CAAC,EAAE,CAAC,CAAC,EAAE,gBAAgB,KAAK,IAAI,CAAC;IAC3C,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,oGAAoG;IACpG,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AA8BD,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CAe5F;AA6KD,wBAAsB,qBAAqB,CACzC,QAAQ,EAAE,MAAM,EAChB,eAAe,EAAE,MAAM,EAAE,EACzB,OAAO,GAAE,YAAiB,GACzB,OAAO,CAAC,IAAI,CAAC,CAqBf"}

package/dist/src/pipeline/orchestrator.js

@@ -1,5 +1,6 @@
-import { resolve, join } from 'path';
+import { resolve, join, extname } from 'path';
 import { execSync } from 'child_process';
+import { existsSync, readFileSync, statSync } from 'fs';
 import Graph from 'graphology';
 import { openDb, closeDb } from '../storage/db.js';
 import { PipelineRunner } from './runner.js';
@@ -27,6 +28,12 @@ import { DEFAULT_OPTIONS } from './types.js';
 import { generateGraphReport } from '../reporting/graph-report.js';
 import { analyzeChurn } from '../analysis/churn.js';
 import { ExtractionCache } from '../cache/extraction-cache.js';
+import { insertNodes, deleteNodesForFile } from '../storage/node-store.js';
+import { insertEdges, deleteEdgesForFile } from '../storage/edge-store.js';
+import { parseFile } from '../parsers/loader.js';
+import { isSupportedExtension } from '../parsers/loader.js';
+import { extractVariables, variableToNode } from './phases/variables.js';
+import { extractArrowFunctions, extractCsharpNamespaces } from './phases/parse.js';
 function getCurrentCommitHash(repoPath) {
     try {
         return execSync('git rev-parse HEAD', { cwd: repoPath, encoding: 'utf8' }).trim();
@@ -188,14 +195,6 @@ async function buildAsyncLocked(repoPath, dbPath, fullOptions, options) {
                 deleteStale(staleFiles);
             }
         }
-        // Skip expensive report regeneration when all files were cached (nothing changed) —
-        // this is purely a performance optimization, not correctness-critical, so it stays
-        // gated behind allFilesCached.
-        if (!ctx.allFilesCached) {
-            const suggestOut = outputs.get('suggest');
-            const questions = suggestOut?.questions ?? [];
-            await generateGraphReport(resolve(repoPath), undefined, dbPath, questions);
-        }
         // Populate churnScore on File nodes from git history (6-month window)
         try {
             const churnResult = await analyzeChurn(ctx.repoPath, '6m');
@@ -237,6 +236,22 @@ async function buildAsyncLocked(repoPath, dbPath, fullOptions, options) {
         }
         db.prepare("INSERT OR REPLACE INTO index_meta VALUES ('indexed_at', ?)").run(new Date().toISOString());
         db.exec('COMMIT');
+        // Skip expensive report regeneration when all files were cached (nothing changed) —
+        // this is purely a performance optimization, not correctness-critical, so it stays
+        // gated behind allFilesCached. This MUST run after COMMIT (issue #91): the async
+        // generateGraphReport overload opens its own DB connection, which in WAL mode only
+        // sees the last committed snapshot — run inside the open transaction, it would render
+        // the report from the previous build (or an empty DB on the first build).
+        if (!ctx.allFilesCached) {
+            try {
+                const suggestOut = outputs.get('suggest');
+                const questions = suggestOut?.questions ?? [];
+                await generateGraphReport(resolve(repoPath), undefined, dbPath, questions);
+            }
+            catch {
+                // Report generation is non-fatal — the build itself already committed.
+            }
+        }
     }
     catch (err) {
         // Best-effort: if the connection is already broken (e.g. the failure was
@@ -252,4 +267,108 @@ async function buildAsyncLocked(repoPath, dbPath, fullOptions, options) {
         closeDb(db);
     }
 }
+const INCREMENTAL_THRESHOLD = 20;
+export async function buildIncrementalAsync(repoPath, changedAbsPaths, options = {}) {
+    if (changedAbsPaths.length === 0)
+        return;
+    if (changedAbsPaths.length > INCREMENTAL_THRESHOLD) {
+        return buildAsync(repoPath, options);
+    }
+    const dbPath = resolve(join(repoPath, '.monomind', 'monograph.db'));
+    if (!existsSync(dbPath)) {
+        return buildAsync(repoPath, options);
+    }
+    const releaseLock = await acquireBuildLock(dbPath);
+    if (!releaseLock) {
+        options.onProgress?.({ phase: 'skip', message: 'Another build is in progress — skipping incremental' });
+        return;
+    }
+    try {
+        await buildIncrementalLocked(resolve(repoPath), dbPath, changedAbsPaths, options);
+    }
+    finally {
+        releaseLock();
+    }
+}
+async function buildIncrementalLocked(resolvedRepo, dbPath, changedAbsPaths, options) {
+    const db = openDb(dbPath);
+    const maxSize = options.maxFileSizeBytes ?? DEFAULT_OPTIONS.maxFileSizeBytes;
+    db.exec('BEGIN');
+    try {
+        let parsed = 0;
+        let deleted = 0;
+        for (const absPath of changedAbsPaths) {
+            const ext = extname(absPath).toLowerCase();
+            if (!isSupportedExtension(ext))
+                continue;
+            if (ext === '.md' || ext === '.markdown')
+                continue;
+            const relPath = absPath.startsWith(resolvedRepo)
+                ? absPath.slice(resolvedRepo.length + 1)
+                : absPath;
+            deleteEdgesForFile(db, relPath);
+            deleteNodesForFile(db, relPath);
+            if (!existsSync(absPath)) {
+                deleted++;
+                continue;
+            }
+            let source;
+            try {
+                const stat = statSync(absPath);
+                if (stat.size > maxSize)
+                    continue;
+                source = readFileSync(absPath, 'utf-8');
+            }
+            catch {
+                continue;
+            }
+            const result = await parseFile(absPath, source, relPath);
+            const nodes = [...result.nodes];
+            const edges = [...result.edges];
+            if (ext === '.cs') {
+                for (const ns of extractCsharpNamespaces(source, relPath)) {
+                    nodes.push({
+                        id: `${ns.filePath}::namespace::${ns.name}`,
+                        name: ns.name, label: 'Namespace', normLabel: 'namespace',
+                        filePath: ns.filePath, line: ns.line, isExported: true,
+                    });
+                }
+            }
+            if (['.ts', '.tsx', '.js', '.jsx'].includes(ext)) {
+                const varInfos = extractVariables(source, relPath);
+                nodes.push(...varInfos.map(v => variableToNode(v)));
+                for (const fn of extractArrowFunctions(source, relPath)) {
+                    nodes.push({
+                        id: `${fn.filePath}::fn::${fn.name}`,
+                        name: fn.name, label: 'Function', normLabel: 'function',
+                        filePath: fn.filePath, line: fn.line, isExported: fn.isExported,
+                    });
+                }
+            }
+            insertNodes(db, nodes);
+            insertEdges(db, edges);
+            parsed++;
+        }
+        const hash = getCurrentCommitHash(resolvedRepo);
+        if (hash) {
+            db.prepare("INSERT OR REPLACE INTO index_meta VALUES ('last_commit_hash', ?)").run(hash);
+        }
+        db.prepare("INSERT OR REPLACE INTO index_meta VALUES ('indexed_at', ?)").run(new Date().toISOString());
+        db.exec('COMMIT');
+        options.onProgress?.({
+            phase: 'incremental',
+            message: `Incremental: ${parsed} re-parsed, ${deleted} removed`,
+        });
+    }
+    catch (err) {
+        try {
+            db.exec('ROLLBACK');
+        }
+        catch { /* ignore */ }
+        throw err;
+    }
+    finally {
+        closeDb(db);
+    }
+}
 //# sourceMappingURL=orchestrator.js.map

package/dist/src/pipeline/orchestrator.js.map

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package/dist/src/pipeline/phases/llm-extract.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"llm-extract.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/llm-extract.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAOlE,MAAM,WAAW,gBAAgB;IAC/B,gBAAgB,EAAE,MAAM,CAAC;IACzB,iBAAiB,EAAE,MAAM,CAAC;CAC3B;AAyCD,eAAO,MAAM,eAAe,EAAE,aAAa,CAAC,gBAAgB,CAgH3D,CAAC"}
+{"version":3,"file":"llm-extract.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/llm-extract.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAOlE,MAAM,WAAW,gBAAgB;IAC/B,gBAAgB,EAAE,MAAM,CAAC;IACzB,iBAAiB,EAAE,MAAM,CAAC;CAC3B;AAyCD,eAAO,MAAM,eAAe,EAAE,aAAa,CAAC,gBAAgB,CA8H3D,CAAC"}

package/dist/src/pipeline/phases/llm-extract.js

@@ -41,6 +41,18 @@ export const llmExtractPhase = {
         }
         const { isClaudeCliAvailable } = await import('../../claude-cli.js');
         if (!isClaudeCliAvailable()) {
+            // Say so. Returning 0 silently is indistinguishable from "your docs had
+            // nothing to infer", so `--llm` looked like it ran and found nothing —
+            // reported as "silently produces 0 inferred edges" (#43), with the
+            // reasonable but wrong conclusion that an API key was missing.
+            //
+            // No API key is involved: LLM work goes through `claude --print`, which
+            // reuses Claude Code's own auth. The only requirement is that `claude` is
+            // on PATH — which is why this can fail *inside* a Claude Code session,
+            // where users least expect it.
+            console.warn('[monograph] --llm skipped: the `claude` CLI was not found on PATH.\n' +
+                '  Semantic extraction runs through `claude --print` and needs no ANTHROPIC_API_KEY.\n' +
+                '  Install it with: npm install -g @anthropic-ai/claude-code');
             return { triplesExtracted: 0, sectionsProcessed: 0 };
         }
         // Fetch Section nodes with non-trivial content

package/dist/src/pipeline/phases/llm-extract.js.map

@@ -1 +1 @@
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