@monoes/monograph 1.5.4 → 1.5.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (394) hide show
  1. package/dist/src/pipeline/phases/llm-extract.d.ts.map +1 -1
  2. package/dist/src/pipeline/phases/llm-extract.js +12 -0
  3. package/dist/src/pipeline/phases/llm-extract.js.map +1 -1
  4. package/dist/src/wiki/wiki-generator.d.ts.map +1 -1
  5. package/dist/src/wiki/wiki-generator.js +5 -1
  6. package/dist/src/wiki/wiki-generator.js.map +1 -1
  7. package/dist/tsconfig.tsbuildinfo +1 -1
  8. package/package.json +3 -1
  9. package/src/pipeline/phases/llm-extract.ts +14 -0
  10. package/src/wiki/wiki-generator.ts +7 -1
  11. package/dist/src/__tests__/analysis/benchmark.test.d.ts +0 -2
  12. package/dist/src/__tests__/analysis/benchmark.test.d.ts.map +0 -1
  13. package/dist/src/__tests__/analysis/benchmark.test.js +0 -54
  14. package/dist/src/__tests__/analysis/benchmark.test.js.map +0 -1
  15. package/dist/src/__tests__/analysis/cluster-quality.test.d.ts +0 -2
  16. package/dist/src/__tests__/analysis/cluster-quality.test.d.ts.map +0 -1
  17. package/dist/src/__tests__/analysis/cluster-quality.test.js +0 -99
  18. package/dist/src/__tests__/analysis/cluster-quality.test.js.map +0 -1
  19. package/dist/src/__tests__/analysis/corpus-health.test.d.ts +0 -2
  20. package/dist/src/__tests__/analysis/corpus-health.test.d.ts.map +0 -1
  21. package/dist/src/__tests__/analysis/corpus-health.test.js +0 -29
  22. package/dist/src/__tests__/analysis/corpus-health.test.js.map +0 -1
  23. package/dist/src/__tests__/analysis/dependency-health.test.d.ts +0 -2
  24. package/dist/src/__tests__/analysis/dependency-health.test.d.ts.map +0 -1
  25. package/dist/src/__tests__/analysis/dependency-health.test.js +0 -96
  26. package/dist/src/__tests__/analysis/dependency-health.test.js.map +0 -1
  27. package/dist/src/__tests__/analysis/file-classifier.test.d.ts +0 -2
  28. package/dist/src/__tests__/analysis/file-classifier.test.d.ts.map +0 -1
  29. package/dist/src/__tests__/analysis/file-classifier.test.js +0 -49
  30. package/dist/src/__tests__/analysis/file-classifier.test.js.map +0 -1
  31. package/dist/src/__tests__/analysis/node-similarity.test.d.ts +0 -2
  32. package/dist/src/__tests__/analysis/node-similarity.test.d.ts.map +0 -1
  33. package/dist/src/__tests__/analysis/node-similarity.test.js +0 -66
  34. package/dist/src/__tests__/analysis/node-similarity.test.js.map +0 -1
  35. package/dist/src/__tests__/cache/augment-cache.test.d.ts +0 -2
  36. package/dist/src/__tests__/cache/augment-cache.test.d.ts.map +0 -1
  37. package/dist/src/__tests__/cache/augment-cache.test.js +0 -47
  38. package/dist/src/__tests__/cache/augment-cache.test.js.map +0 -1
  39. package/dist/src/__tests__/cli/check-update.test.d.ts +0 -2
  40. package/dist/src/__tests__/cli/check-update.test.d.ts.map +0 -1
  41. package/dist/src/__tests__/cli/check-update.test.js +0 -38
  42. package/dist/src/__tests__/cli/check-update.test.js.map +0 -1
  43. package/dist/src/__tests__/cli/hooks-install.test.d.ts +0 -2
  44. package/dist/src/__tests__/cli/hooks-install.test.d.ts.map +0 -1
  45. package/dist/src/__tests__/cli/hooks-install.test.js +0 -48
  46. package/dist/src/__tests__/cli/hooks-install.test.js.map +0 -1
  47. package/dist/src/__tests__/cli/hooks-marker.test.d.ts +0 -2
  48. package/dist/src/__tests__/cli/hooks-marker.test.d.ts.map +0 -1
  49. package/dist/src/__tests__/cli/hooks-marker.test.js +0 -115
  50. package/dist/src/__tests__/cli/hooks-marker.test.js.map +0 -1
  51. package/dist/src/__tests__/cli/hooks-status.test.d.ts +0 -2
  52. package/dist/src/__tests__/cli/hooks-status.test.d.ts.map +0 -1
  53. package/dist/src/__tests__/cli/hooks-status.test.js +0 -36
  54. package/dist/src/__tests__/cli/hooks-status.test.js.map +0 -1
  55. package/dist/src/__tests__/export/adjacency-matrix.test.d.ts +0 -2
  56. package/dist/src/__tests__/export/adjacency-matrix.test.d.ts.map +0 -1
  57. package/dist/src/__tests__/export/adjacency-matrix.test.js +0 -103
  58. package/dist/src/__tests__/export/adjacency-matrix.test.js.map +0 -1
  59. package/dist/src/__tests__/export/csv.test.d.ts +0 -2
  60. package/dist/src/__tests__/export/csv.test.d.ts.map +0 -1
  61. package/dist/src/__tests__/export/csv.test.js +0 -34
  62. package/dist/src/__tests__/export/csv.test.js.map +0 -1
  63. package/dist/src/__tests__/export/dot.test.d.ts +0 -2
  64. package/dist/src/__tests__/export/dot.test.d.ts.map +0 -1
  65. package/dist/src/__tests__/export/dot.test.js +0 -73
  66. package/dist/src/__tests__/export/dot.test.js.map +0 -1
  67. package/dist/src/__tests__/export/gexf.test.d.ts +0 -2
  68. package/dist/src/__tests__/export/gexf.test.d.ts.map +0 -1
  69. package/dist/src/__tests__/export/gexf.test.js +0 -66
  70. package/dist/src/__tests__/export/gexf.test.js.map +0 -1
  71. package/dist/src/__tests__/export/graphml.test.d.ts +0 -2
  72. package/dist/src/__tests__/export/graphml.test.d.ts.map +0 -1
  73. package/dist/src/__tests__/export/graphml.test.js +0 -51
  74. package/dist/src/__tests__/export/graphml.test.js.map +0 -1
  75. package/dist/src/__tests__/export/mermaid.test.d.ts +0 -2
  76. package/dist/src/__tests__/export/mermaid.test.d.ts.map +0 -1
  77. package/dist/src/__tests__/export/mermaid.test.js +0 -78
  78. package/dist/src/__tests__/export/mermaid.test.js.map +0 -1
  79. package/dist/src/__tests__/graph/betweenness.test.d.ts +0 -2
  80. package/dist/src/__tests__/graph/betweenness.test.d.ts.map +0 -1
  81. package/dist/src/__tests__/graph/betweenness.test.js +0 -77
  82. package/dist/src/__tests__/graph/betweenness.test.js.map +0 -1
  83. package/dist/src/__tests__/graph/cycles.test.d.ts +0 -2
  84. package/dist/src/__tests__/graph/cycles.test.d.ts.map +0 -1
  85. package/dist/src/__tests__/graph/cycles.test.js +0 -119
  86. package/dist/src/__tests__/graph/cycles.test.js.map +0 -1
  87. package/dist/src/__tests__/graph/dead-code.test.d.ts +0 -2
  88. package/dist/src/__tests__/graph/dead-code.test.d.ts.map +0 -1
  89. package/dist/src/__tests__/graph/dead-code.test.js +0 -89
  90. package/dist/src/__tests__/graph/dead-code.test.js.map +0 -1
  91. package/dist/src/__tests__/graph/dfs.test.d.ts +0 -2
  92. package/dist/src/__tests__/graph/dfs.test.d.ts.map +0 -1
  93. package/dist/src/__tests__/graph/dfs.test.js +0 -56
  94. package/dist/src/__tests__/graph/dfs.test.js.map +0 -1
  95. package/dist/src/__tests__/graph/diff-summary.test.d.ts +0 -2
  96. package/dist/src/__tests__/graph/diff-summary.test.d.ts.map +0 -1
  97. package/dist/src/__tests__/graph/diff-summary.test.js +0 -74
  98. package/dist/src/__tests__/graph/diff-summary.test.js.map +0 -1
  99. package/dist/src/__tests__/graph/edge-filter.test.d.ts +0 -2
  100. package/dist/src/__tests__/graph/edge-filter.test.d.ts.map +0 -1
  101. package/dist/src/__tests__/graph/edge-filter.test.js +0 -117
  102. package/dist/src/__tests__/graph/edge-filter.test.js.map +0 -1
  103. package/dist/src/__tests__/graph/import-chain.test.d.ts +0 -2
  104. package/dist/src/__tests__/graph/import-chain.test.d.ts.map +0 -1
  105. package/dist/src/__tests__/graph/import-chain.test.js +0 -101
  106. package/dist/src/__tests__/graph/import-chain.test.js.map +0 -1
  107. package/dist/src/__tests__/graph/merge.test.d.ts +0 -2
  108. package/dist/src/__tests__/graph/merge.test.d.ts.map +0 -1
  109. package/dist/src/__tests__/graph/merge.test.js +0 -132
  110. package/dist/src/__tests__/graph/merge.test.js.map +0 -1
  111. package/dist/src/__tests__/graph/node-search.test.d.ts +0 -2
  112. package/dist/src/__tests__/graph/node-search.test.d.ts.map +0 -1
  113. package/dist/src/__tests__/graph/node-search.test.js +0 -127
  114. package/dist/src/__tests__/graph/node-search.test.js.map +0 -1
  115. package/dist/src/__tests__/graph/normalize-id.test.d.ts +0 -2
  116. package/dist/src/__tests__/graph/normalize-id.test.d.ts.map +0 -1
  117. package/dist/src/__tests__/graph/normalize-id.test.js +0 -88
  118. package/dist/src/__tests__/graph/normalize-id.test.js.map +0 -1
  119. package/dist/src/__tests__/graph/pagerank.test.d.ts +0 -2
  120. package/dist/src/__tests__/graph/pagerank.test.d.ts.map +0 -1
  121. package/dist/src/__tests__/graph/pagerank.test.js +0 -87
  122. package/dist/src/__tests__/graph/pagerank.test.js.map +0 -1
  123. package/dist/src/__tests__/graph/prune.test.d.ts +0 -2
  124. package/dist/src/__tests__/graph/prune.test.d.ts.map +0 -1
  125. package/dist/src/__tests__/graph/prune.test.js +0 -98
  126. package/dist/src/__tests__/graph/prune.test.js.map +0 -1
  127. package/dist/src/__tests__/graph/regex-search.test.d.ts +0 -2
  128. package/dist/src/__tests__/graph/regex-search.test.d.ts.map +0 -1
  129. package/dist/src/__tests__/graph/regex-search.test.js +0 -128
  130. package/dist/src/__tests__/graph/regex-search.test.js.map +0 -1
  131. package/dist/src/__tests__/graph/ripple-impact.test.d.ts +0 -2
  132. package/dist/src/__tests__/graph/ripple-impact.test.d.ts.map +0 -1
  133. package/dist/src/__tests__/graph/ripple-impact.test.js +0 -64
  134. package/dist/src/__tests__/graph/ripple-impact.test.js.map +0 -1
  135. package/dist/src/__tests__/graph/scc.test.d.ts +0 -2
  136. package/dist/src/__tests__/graph/scc.test.d.ts.map +0 -1
  137. package/dist/src/__tests__/graph/scc.test.js +0 -77
  138. package/dist/src/__tests__/graph/scc.test.js.map +0 -1
  139. package/dist/src/__tests__/graph/statistics.test.d.ts +0 -2
  140. package/dist/src/__tests__/graph/statistics.test.d.ts.map +0 -1
  141. package/dist/src/__tests__/graph/statistics.test.js +0 -197
  142. package/dist/src/__tests__/graph/statistics.test.js.map +0 -1
  143. package/dist/src/__tests__/graph/subgraph.test.d.ts +0 -2
  144. package/dist/src/__tests__/graph/subgraph.test.d.ts.map +0 -1
  145. package/dist/src/__tests__/graph/subgraph.test.js +0 -116
  146. package/dist/src/__tests__/graph/subgraph.test.js.map +0 -1
  147. package/dist/src/__tests__/graph/topo-sort.test.d.ts +0 -2
  148. package/dist/src/__tests__/graph/topo-sort.test.d.ts.map +0 -1
  149. package/dist/src/__tests__/graph/topo-sort.test.js +0 -101
  150. package/dist/src/__tests__/graph/topo-sort.test.js.map +0 -1
  151. package/dist/src/__tests__/graph/wcc.test.d.ts +0 -2
  152. package/dist/src/__tests__/graph/wcc.test.d.ts.map +0 -1
  153. package/dist/src/__tests__/graph/wcc.test.js +0 -91
  154. package/dist/src/__tests__/graph/wcc.test.js.map +0 -1
  155. package/dist/src/__tests__/groups/grpc-extractor.test.d.ts +0 -2
  156. package/dist/src/__tests__/groups/grpc-extractor.test.d.ts.map +0 -1
  157. package/dist/src/__tests__/groups/grpc-extractor.test.js +0 -42
  158. package/dist/src/__tests__/groups/grpc-extractor.test.js.map +0 -1
  159. package/dist/src/__tests__/groups/service-boundary.test.d.ts +0 -2
  160. package/dist/src/__tests__/groups/service-boundary.test.d.ts.map +0 -1
  161. package/dist/src/__tests__/groups/service-boundary.test.js +0 -75
  162. package/dist/src/__tests__/groups/service-boundary.test.js.map +0 -1
  163. package/dist/src/__tests__/groups/topic-extractor.test.d.ts +0 -2
  164. package/dist/src/__tests__/groups/topic-extractor.test.d.ts.map +0 -1
  165. package/dist/src/__tests__/groups/topic-extractor.test.js +0 -37
  166. package/dist/src/__tests__/groups/topic-extractor.test.js.map +0 -1
  167. package/dist/src/__tests__/ingest/git-clone.test.d.ts +0 -2
  168. package/dist/src/__tests__/ingest/git-clone.test.d.ts.map +0 -1
  169. package/dist/src/__tests__/ingest/git-clone.test.js +0 -100
  170. package/dist/src/__tests__/ingest/git-clone.test.js.map +0 -1
  171. package/dist/src/__tests__/ingest/query-memory.test.d.ts +0 -2
  172. package/dist/src/__tests__/ingest/query-memory.test.d.ts.map +0 -1
  173. package/dist/src/__tests__/ingest/query-memory.test.js +0 -116
  174. package/dist/src/__tests__/ingest/query-memory.test.js.map +0 -1
  175. package/dist/src/__tests__/ingest/transcribe.test.d.ts +0 -2
  176. package/dist/src/__tests__/ingest/transcribe.test.d.ts.map +0 -1
  177. package/dist/src/__tests__/ingest/transcribe.test.js +0 -50
  178. package/dist/src/__tests__/ingest/transcribe.test.js.map +0 -1
  179. package/dist/src/__tests__/ingest/url-ingest.test.d.ts +0 -2
  180. package/dist/src/__tests__/ingest/url-ingest.test.d.ts.map +0 -1
  181. package/dist/src/__tests__/ingest/url-ingest.test.js +0 -43
  182. package/dist/src/__tests__/ingest/url-ingest.test.js.map +0 -1
  183. package/dist/src/__tests__/mcp-resources/repo-context-resource.test.d.ts +0 -2
  184. package/dist/src/__tests__/mcp-resources/repo-context-resource.test.d.ts.map +0 -1
  185. package/dist/src/__tests__/mcp-resources/repo-context-resource.test.js +0 -34
  186. package/dist/src/__tests__/mcp-resources/repo-context-resource.test.js.map +0 -1
  187. package/dist/src/__tests__/mcp-resources/repos-resource.test.d.ts +0 -2
  188. package/dist/src/__tests__/mcp-resources/repos-resource.test.d.ts.map +0 -1
  189. package/dist/src/__tests__/mcp-resources/repos-resource.test.js +0 -63
  190. package/dist/src/__tests__/mcp-resources/repos-resource.test.js.map +0 -1
  191. package/dist/src/__tests__/mcp-resources/wiki-resource.test.d.ts +0 -2
  192. package/dist/src/__tests__/mcp-resources/wiki-resource.test.d.ts.map +0 -1
  193. package/dist/src/__tests__/mcp-resources/wiki-resource.test.js +0 -47
  194. package/dist/src/__tests__/mcp-resources/wiki-resource.test.js.map +0 -1
  195. package/dist/src/__tests__/mcp-tools/explain.test.d.ts +0 -2
  196. package/dist/src/__tests__/mcp-tools/explain.test.d.ts.map +0 -1
  197. package/dist/src/__tests__/mcp-tools/explain.test.js +0 -42
  198. package/dist/src/__tests__/mcp-tools/explain.test.js.map +0 -1
  199. package/dist/src/__tests__/mcp-tools/graph-query.test.d.ts +0 -2
  200. package/dist/src/__tests__/mcp-tools/graph-query.test.d.ts.map +0 -1
  201. package/dist/src/__tests__/mcp-tools/graph-query.test.js +0 -41
  202. package/dist/src/__tests__/mcp-tools/graph-query.test.js.map +0 -1
  203. package/dist/src/__tests__/mcp-tools/group-sync.test.d.ts +0 -2
  204. package/dist/src/__tests__/mcp-tools/group-sync.test.d.ts.map +0 -1
  205. package/dist/src/__tests__/mcp-tools/group-sync.test.js +0 -8
  206. package/dist/src/__tests__/mcp-tools/group-sync.test.js.map +0 -1
  207. package/dist/src/__tests__/mcp-tools/impact-filtering.test.d.ts +0 -2
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  211. package/dist/src/__tests__/mcp-tools/impact.risk.test.d.ts +0 -2
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  214. package/dist/src/__tests__/mcp-tools/impact.risk.test.js.map +0 -1
  215. package/dist/src/__tests__/mcp-tools/list-repos.test.d.ts +0 -2
  216. package/dist/src/__tests__/mcp-tools/list-repos.test.d.ts.map +0 -1
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  219. package/dist/src/__tests__/mcp-tools/neighbors.test.d.ts +0 -2
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  223. package/dist/src/__tests__/mcp-tools/query.test.d.ts +0 -2
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  227. package/dist/src/__tests__/parsers/language-parsers.test.d.ts +0 -2
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  235. package/dist/src/__tests__/pipeline/cluster-only.test.d.ts +0 -2
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  243. package/dist/src/__tests__/pipeline/phases/communities.cohesion.test.d.ts +0 -2
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  247. package/dist/src/__tests__/pipeline/phases/community-split.test.d.ts +0 -2
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  251. package/dist/src/__tests__/pipeline/phases/framework-detect.test.d.ts +0 -2
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  255. package/dist/src/__tests__/pipeline/phases/import-resolver.test.d.ts +0 -2
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  259. package/dist/src/__tests__/pipeline/phases/parse-arrow.test.d.ts +0 -2
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@@ -1,64 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { rippleImpact } from '../../graph/ripple-impact.js';
3
- const edges = [
4
- { sourceId: 'a', targetId: 'b' },
5
- { sourceId: 'b', targetId: 'c' },
6
- { sourceId: 'c', targetId: 'd' },
7
- { sourceId: 'd', targetId: 'e' },
8
- ];
9
- describe('rippleImpact', () => {
10
- it('returns only direct neighbors at depth 1', () => {
11
- const result = rippleImpact('a', edges, 1);
12
- expect(result.byDepth[1]).toContain('b');
13
- expect(result.byDepth[2]).toBeUndefined();
14
- });
15
- it('returns nodes at each depth level', () => {
16
- const result = rippleImpact('a', edges, 3);
17
- expect(result.byDepth[1]).toContain('b');
18
- expect(result.byDepth[2]).toContain('c');
19
- expect(result.byDepth[3]).toContain('d');
20
- });
21
- it('does not repeat nodes across depths', () => {
22
- const loopyEdges = [
23
- { sourceId: 'a', targetId: 'b' },
24
- { sourceId: 'b', targetId: 'c' },
25
- { sourceId: 'c', targetId: 'a' }, // cycle
26
- ];
27
- const result = rippleImpact('a', loopyEdges, 5);
28
- const allNodes = Object.values(result.byDepth).flat();
29
- const unique = new Set(allNodes);
30
- expect(unique.size).toBe(allNodes.length);
31
- });
32
- it('totalScore is positive and decreases with depth-only paths', () => {
33
- const result = rippleImpact('a', edges, 4);
34
- expect(result.totalScore).toBeGreaterThan(0);
35
- });
36
- it('score at depth 2 is less than score at depth 1 (decay)', () => {
37
- const result = rippleImpact('a', edges, 2);
38
- expect(result.byDepth[1]?.length ?? 0).toBeGreaterThan(0);
39
- // total score should reflect decay weighting
40
- const result1 = rippleImpact('a', edges, 1);
41
- expect(result.totalScore).toBeGreaterThan(result1.totalScore);
42
- });
43
- it('returns empty result for unknown node', () => {
44
- const result = rippleImpact('unknown', edges, 3);
45
- expect(Object.keys(result.byDepth)).toHaveLength(0);
46
- expect(result.totalScore).toBe(0);
47
- });
48
- it('respects maxDepth boundary', () => {
49
- const result = rippleImpact('a', edges, 2);
50
- expect(result.byDepth[3]).toBeUndefined();
51
- });
52
- it('works on directed edges (not traversing backwards)', () => {
53
- // directed: a→b→c only; starting from 'c' should yield nothing
54
- const result = rippleImpact('c', edges, 3);
55
- // 'd' is downstream of c
56
- expect(result.byDepth[1]).toContain('d');
57
- });
58
- it('returns totalScore 0 when node has no outgoing edges', () => {
59
- const result = rippleImpact('e', edges, 3);
60
- expect(result.totalScore).toBe(0);
61
- expect(Object.keys(result.byDepth)).toHaveLength(0);
62
- });
63
- });
64
- //# sourceMappingURL=ripple-impact.test.js.map
@@ -1 +0,0 @@
1
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@@ -1,2 +0,0 @@
1
- export {};
2
- //# sourceMappingURL=scc.test.d.ts.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"scc.test.d.ts","sourceRoot":"","sources":["../../../../src/__tests__/graph/scc.test.ts"],"names":[],"mappings":""}
@@ -1,77 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { findStronglyConnectedComponents } from '../../graph/cycles.js';
3
- import { openDb } from '../../storage/db.js';
4
- import { join } from 'path';
5
- import { mkdtempSync } from 'fs';
6
- import { tmpdir } from 'os';
7
- function makeTempDb() {
8
- const dir = mkdtempSync(join(tmpdir(), 'monograph-scc-test-'));
9
- return openDb(join(dir, 'test.db'));
10
- }
11
- function insertNode(db, id) {
12
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
13
- .run(id, id, id.toLowerCase());
14
- }
15
- function insertEdge(db, src, tgt) {
16
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
17
- .run(`${src}_${tgt}`, src, tgt);
18
- }
19
- describe('findStronglyConnectedComponents', () => {
20
- it('returns empty array for empty graph', () => {
21
- const db = makeTempDb();
22
- expect(findStronglyConnectedComponents(db)).toEqual([]);
23
- db.close();
24
- });
25
- it('returns each single node as its own SCC in a DAG', () => {
26
- const db = makeTempDb();
27
- insertNode(db, 'a');
28
- insertNode(db, 'b');
29
- insertNode(db, 'c');
30
- insertEdge(db, 'a', 'b');
31
- insertEdge(db, 'b', 'c');
32
- const result = findStronglyConnectedComponents(db);
33
- // In a DAG, every node is its own SCC
34
- expect(result.length).toBe(3);
35
- expect(result.every(comp => comp.length === 1)).toBe(true);
36
- db.close();
37
- });
38
- it('returns single SCC containing both nodes for a->b->a cycle', () => {
39
- const db = makeTempDb();
40
- insertNode(db, 'a');
41
- insertNode(db, 'b');
42
- insertEdge(db, 'a', 'b');
43
- insertEdge(db, 'b', 'a');
44
- const result = findStronglyConnectedComponents(db);
45
- const cycleScc = result.find(comp => comp.length === 2);
46
- expect(cycleScc).toBeDefined();
47
- expect(cycleScc.sort()).toEqual(['a', 'b']);
48
- db.close();
49
- });
50
- it('covers all nodes across all SCCs', () => {
51
- const db = makeTempDb();
52
- insertNode(db, 'a');
53
- insertNode(db, 'b');
54
- insertNode(db, 'c');
55
- insertNode(db, 'd');
56
- insertEdge(db, 'a', 'b');
57
- insertEdge(db, 'b', 'a'); // cycle: {a, b}
58
- insertEdge(db, 'c', 'd'); // DAG tail: {c}, {d}
59
- const result = findStronglyConnectedComponents(db);
60
- const allNodes = result.flat().sort();
61
- expect(allNodes).toEqual(['a', 'b', 'c', 'd'].sort());
62
- db.close();
63
- });
64
- it('returns each node in exactly one SCC', () => {
65
- const db = makeTempDb();
66
- ['a', 'b', 'c'].forEach(n => insertNode(db, n));
67
- insertEdge(db, 'a', 'b');
68
- insertEdge(db, 'b', 'c');
69
- insertEdge(db, 'c', 'a');
70
- const result = findStronglyConnectedComponents(db);
71
- const allNodes = result.flat();
72
- const unique = new Set(allNodes);
73
- expect(unique.size).toBe(allNodes.length); // no duplicates
74
- db.close();
75
- });
76
- });
77
- //# sourceMappingURL=scc.test.js.map
@@ -1 +0,0 @@
1
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@@ -1,2 +0,0 @@
1
- export {};
2
- //# sourceMappingURL=statistics.test.d.ts.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"statistics.test.d.ts","sourceRoot":"","sources":["../../../../src/__tests__/graph/statistics.test.ts"],"names":[],"mappings":""}
@@ -1,197 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { graphDensity, clusteringCoefficient, averagePathLength, graphDiameter } from '../../graph/statistics.js';
3
- import { openDb } from '../../storage/db.js';
4
- import { join } from 'path';
5
- import { mkdtempSync } from 'fs';
6
- import { tmpdir } from 'os';
7
- function makeTempDb() {
8
- const dir = mkdtempSync(join(tmpdir(), 'monograph-stats-test-'));
9
- return openDb(join(dir, 'test.db'));
10
- }
11
- function insertNode(db, id) {
12
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
13
- .run(id, id, id.toLowerCase());
14
- }
15
- function insertEdge(db, src, tgt) {
16
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
17
- .run(`${src}_${tgt}`, src, tgt);
18
- }
19
- describe('graphDensity', () => {
20
- it('returns 0 for empty graph', () => {
21
- const db = makeTempDb();
22
- expect(graphDensity(db)).toBe(0);
23
- db.close();
24
- });
25
- it('returns 0 for graph with only nodes and no edges', () => {
26
- const db = makeTempDb();
27
- insertNode(db, 'a');
28
- insertNode(db, 'b');
29
- expect(graphDensity(db)).toBe(0);
30
- db.close();
31
- });
32
- it('returns 1 for complete directed graph of 3 nodes (6 edges)', () => {
33
- const db = makeTempDb();
34
- insertNode(db, 'a');
35
- insertNode(db, 'b');
36
- insertNode(db, 'c');
37
- insertEdge(db, 'a', 'b');
38
- insertEdge(db, 'a', 'c');
39
- insertEdge(db, 'b', 'a');
40
- insertEdge(db, 'b', 'c');
41
- insertEdge(db, 'c', 'a');
42
- insertEdge(db, 'c', 'b');
43
- expect(graphDensity(db)).toBeCloseTo(1, 5);
44
- db.close();
45
- });
46
- it('returns value between 0 and 1 for partial graph', () => {
47
- const db = makeTempDb();
48
- insertNode(db, 'a');
49
- insertNode(db, 'b');
50
- insertNode(db, 'c');
51
- insertEdge(db, 'a', 'b');
52
- insertEdge(db, 'b', 'c');
53
- const d = graphDensity(db);
54
- expect(d).toBeGreaterThan(0);
55
- expect(d).toBeLessThan(1);
56
- db.close();
57
- });
58
- it('returns a number', () => {
59
- const db = makeTempDb();
60
- insertNode(db, 'x');
61
- expect(typeof graphDensity(db)).toBe('number');
62
- db.close();
63
- });
64
- });
65
- describe('clusteringCoefficient', () => {
66
- it('returns 0 for empty graph', () => {
67
- const db = makeTempDb();
68
- expect(clusteringCoefficient(db)).toBe(0);
69
- db.close();
70
- });
71
- it('returns 0 for a chain graph (no triangles)', () => {
72
- const db = makeTempDb();
73
- insertNode(db, 'a');
74
- insertNode(db, 'b');
75
- insertNode(db, 'c');
76
- insertEdge(db, 'a', 'b');
77
- insertEdge(db, 'b', 'c');
78
- const cc = clusteringCoefficient(db);
79
- expect(cc).toBeGreaterThanOrEqual(0);
80
- expect(cc).toBeLessThanOrEqual(1);
81
- db.close();
82
- });
83
- it('returns 1 for fully connected triangle', () => {
84
- const db = makeTempDb();
85
- insertNode(db, 'a');
86
- insertNode(db, 'b');
87
- insertNode(db, 'c');
88
- // bidirectional triangle
89
- insertEdge(db, 'a', 'b');
90
- insertEdge(db, 'b', 'a');
91
- insertEdge(db, 'b', 'c');
92
- insertEdge(db, 'c', 'b');
93
- insertEdge(db, 'a', 'c');
94
- insertEdge(db, 'c', 'a');
95
- const cc = clusteringCoefficient(db);
96
- expect(cc).toBeGreaterThanOrEqual(0);
97
- expect(cc).toBeLessThanOrEqual(1);
98
- db.close();
99
- });
100
- it('returns a number between 0 and 1', () => {
101
- const db = makeTempDb();
102
- insertNode(db, 'x');
103
- insertNode(db, 'y');
104
- insertEdge(db, 'x', 'y');
105
- const cc = clusteringCoefficient(db);
106
- expect(typeof cc).toBe('number');
107
- expect(cc).toBeGreaterThanOrEqual(0);
108
- expect(cc).toBeLessThanOrEqual(1);
109
- db.close();
110
- });
111
- });
112
- describe('averagePathLength', () => {
113
- it('returns 0 for empty graph', () => {
114
- const db = makeTempDb();
115
- expect(averagePathLength(db)).toBe(0);
116
- db.close();
117
- });
118
- it('returns 0 for single node', () => {
119
- const db = makeTempDb();
120
- insertNode(db, 'a');
121
- expect(averagePathLength(db)).toBe(0);
122
- db.close();
123
- });
124
- it('returns 1 for two directly connected nodes', () => {
125
- const db = makeTempDb();
126
- insertNode(db, 'a');
127
- insertNode(db, 'b');
128
- insertEdge(db, 'a', 'b');
129
- // a->b has path length 1; b->a unreachable
130
- expect(averagePathLength(db)).toBeCloseTo(1, 5);
131
- db.close();
132
- });
133
- it('returns 4/3 for a->b->c chain (a->b=1, a->c=2, b->c=1)', () => {
134
- const db = makeTempDb();
135
- insertNode(db, 'a');
136
- insertNode(db, 'b');
137
- insertNode(db, 'c');
138
- insertEdge(db, 'a', 'b');
139
- insertEdge(db, 'b', 'c');
140
- // reachable pairs: (a,b)=1, (a,c)=2, (b,c)=1 => total 4 / 3 pairs
141
- const apl = averagePathLength(db);
142
- expect(apl).toBeCloseTo(4 / 3, 5);
143
- db.close();
144
- });
145
- it('returns a non-negative number', () => {
146
- const db = makeTempDb();
147
- insertNode(db, 'x');
148
- insertNode(db, 'y');
149
- insertEdge(db, 'x', 'y');
150
- expect(averagePathLength(db)).toBeGreaterThanOrEqual(0);
151
- db.close();
152
- });
153
- });
154
- describe('graphDiameter', () => {
155
- it('returns 0 for empty graph', () => {
156
- const db = makeTempDb();
157
- expect(graphDiameter(db)).toBe(0);
158
- db.close();
159
- });
160
- it('returns 0 for single node', () => {
161
- const db = makeTempDb();
162
- insertNode(db, 'a');
163
- expect(graphDiameter(db)).toBe(0);
164
- db.close();
165
- });
166
- it('returns 1 for two directly connected nodes', () => {
167
- const db = makeTempDb();
168
- insertNode(db, 'a');
169
- insertNode(db, 'b');
170
- insertEdge(db, 'a', 'b');
171
- expect(graphDiameter(db)).toBe(1);
172
- db.close();
173
- });
174
- it('returns 2 for a->b->c chain', () => {
175
- const db = makeTempDb();
176
- insertNode(db, 'a');
177
- insertNode(db, 'b');
178
- insertNode(db, 'c');
179
- insertEdge(db, 'a', 'b');
180
- insertEdge(db, 'b', 'c');
181
- expect(graphDiameter(db)).toBe(2);
182
- db.close();
183
- });
184
- it('returns 3 for a->b->c->d chain', () => {
185
- const db = makeTempDb();
186
- insertNode(db, 'a');
187
- insertNode(db, 'b');
188
- insertNode(db, 'c');
189
- insertNode(db, 'd');
190
- insertEdge(db, 'a', 'b');
191
- insertEdge(db, 'b', 'c');
192
- insertEdge(db, 'c', 'd');
193
- expect(graphDiameter(db)).toBe(3);
194
- db.close();
195
- });
196
- });
197
- //# sourceMappingURL=statistics.test.js.map
@@ -1 +0,0 @@
1
- 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@@ -1,2 +0,0 @@
1
- export {};
2
- //# sourceMappingURL=subgraph.test.d.ts.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"subgraph.test.d.ts","sourceRoot":"","sources":["../../../../src/__tests__/graph/subgraph.test.ts"],"names":[],"mappings":""}
@@ -1,116 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { extractInducedSubgraph } from '../../graph/subgraph.js';
3
- import { openDb } from '../../storage/db.js';
4
- import { join } from 'path';
5
- import { mkdtempSync } from 'fs';
6
- import { tmpdir } from 'os';
7
- function makeTempDb() {
8
- const dir = mkdtempSync(join(tmpdir(), 'monograph-subgraph-test-'));
9
- return openDb(join(dir, 'test.db'));
10
- }
11
- function insertNode(db, id, name = id) {
12
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
13
- .run(id, name, name.toLowerCase());
14
- }
15
- function insertEdge(db, src, tgt, relation = 'CALLS') {
16
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, ?, 'EXTRACTED', 1.0)`)
17
- .run(`${src}_${tgt}`, src, tgt, relation);
18
- }
19
- describe('extractInducedSubgraph', () => {
20
- it('returns empty nodes and edges for empty node set', () => {
21
- const db = makeTempDb();
22
- insertNode(db, 'a');
23
- insertNode(db, 'b');
24
- insertEdge(db, 'a', 'b');
25
- const result = extractInducedSubgraph(db, []);
26
- expect(result.nodes).toHaveLength(0);
27
- expect(result.edges).toHaveLength(0);
28
- db.close();
29
- });
30
- it('returns only specified nodes', () => {
31
- const db = makeTempDb();
32
- insertNode(db, 'a');
33
- insertNode(db, 'b');
34
- insertNode(db, 'c');
35
- insertEdge(db, 'a', 'b');
36
- insertEdge(db, 'b', 'c');
37
- const result = extractInducedSubgraph(db, ['a', 'b']);
38
- expect(result.nodes).toHaveLength(2);
39
- expect(result.nodes.map(n => n.id).sort()).toEqual(['a', 'b']);
40
- db.close();
41
- });
42
- it('returns only edges where both source and target are in the node set', () => {
43
- const db = makeTempDb();
44
- insertNode(db, 'a');
45
- insertNode(db, 'b');
46
- insertNode(db, 'c');
47
- insertEdge(db, 'a', 'b');
48
- insertEdge(db, 'b', 'c');
49
- const result = extractInducedSubgraph(db, ['a', 'b']);
50
- // a->b is in subgraph; b->c is NOT (c excluded)
51
- expect(result.edges).toHaveLength(1);
52
- expect(result.edges[0].sourceId).toBe('a');
53
- expect(result.edges[0].targetId).toBe('b');
54
- db.close();
55
- });
56
- it('excludes edges crossing the subgraph boundary', () => {
57
- const db = makeTempDb();
58
- insertNode(db, 'a');
59
- insertNode(db, 'b');
60
- insertNode(db, 'c');
61
- insertEdge(db, 'a', 'b');
62
- insertEdge(db, 'a', 'c');
63
- const result = extractInducedSubgraph(db, ['a', 'b']);
64
- expect(result.edges).toHaveLength(1);
65
- db.close();
66
- });
67
- it('handles a single node with no edges', () => {
68
- const db = makeTempDb();
69
- insertNode(db, 'solo');
70
- const result = extractInducedSubgraph(db, ['solo']);
71
- expect(result.nodes).toHaveLength(1);
72
- expect(result.edges).toHaveLength(0);
73
- db.close();
74
- });
75
- it('ignores node ids not in the database', () => {
76
- const db = makeTempDb();
77
- insertNode(db, 'a');
78
- const result = extractInducedSubgraph(db, ['a', 'ghost']);
79
- expect(result.nodes).toHaveLength(1);
80
- expect(result.nodes[0].id).toBe('a');
81
- db.close();
82
- });
83
- it('returns all edges within the full node set', () => {
84
- const db = makeTempDb();
85
- insertNode(db, 'x');
86
- insertNode(db, 'y');
87
- insertNode(db, 'z');
88
- insertEdge(db, 'x', 'y');
89
- insertEdge(db, 'y', 'z');
90
- insertEdge(db, 'x', 'z');
91
- const result = extractInducedSubgraph(db, ['x', 'y', 'z']);
92
- expect(result.nodes).toHaveLength(3);
93
- expect(result.edges).toHaveLength(3);
94
- db.close();
95
- });
96
- it('returns MonographNode and MonographEdge shaped objects', () => {
97
- const db = makeTempDb();
98
- insertNode(db, 'a');
99
- insertNode(db, 'b');
100
- insertEdge(db, 'a', 'b', 'IMPORTS');
101
- const result = extractInducedSubgraph(db, ['a', 'b']);
102
- const node = result.nodes[0];
103
- expect(node).toHaveProperty('id');
104
- expect(node).toHaveProperty('label');
105
- expect(node).toHaveProperty('name');
106
- expect(node).toHaveProperty('isExported');
107
- const edge = result.edges[0];
108
- expect(edge).toHaveProperty('id');
109
- expect(edge).toHaveProperty('sourceId');
110
- expect(edge).toHaveProperty('targetId');
111
- expect(edge).toHaveProperty('relation');
112
- expect(edge.relation).toBe('IMPORTS');
113
- db.close();
114
- });
115
- });
116
- //# sourceMappingURL=subgraph.test.js.map
@@ -1 +0,0 @@
1
- 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@@ -1,2 +0,0 @@
1
- export {};
2
- //# sourceMappingURL=topo-sort.test.d.ts.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"topo-sort.test.d.ts","sourceRoot":"","sources":["../../../../src/__tests__/graph/topo-sort.test.ts"],"names":[],"mappings":""}
@@ -1,101 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { topologicalLevelSort } from '../../graph/topo-sort.js';
3
- import { openDb } from '../../storage/db.js';
4
- import { join } from 'path';
5
- import { mkdtempSync } from 'fs';
6
- import { tmpdir } from 'os';
7
- function makeTempDb() {
8
- const dir = mkdtempSync(join(tmpdir(), 'monograph-topo-test-'));
9
- return openDb(join(dir, 'test.db'));
10
- }
11
- function insertNode(db, id) {
12
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'File', ?, ?, 0)`)
13
- .run(id, id, id.toLowerCase());
14
- }
15
- function insertEdge(db, src, tgt) {
16
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'IMPORTS', 'EXTRACTED', 1.0)`)
17
- .run(`${src}_${tgt}`, src, tgt);
18
- }
19
- describe('topologicalLevelSort', () => {
20
- it('returns empty levels and 0 cycleCount for empty graph', () => {
21
- const db = makeTempDb();
22
- const result = topologicalLevelSort(db);
23
- expect(result.levels).toEqual([]);
24
- expect(result.cycleCount).toBe(0);
25
- db.close();
26
- });
27
- it('returns single level for single node with no edges', () => {
28
- const db = makeTempDb();
29
- insertNode(db, 'a');
30
- const result = topologicalLevelSort(db);
31
- expect(result.levels.length).toBe(1);
32
- expect(result.levels[0]).toContain('a');
33
- expect(result.cycleCount).toBe(0);
34
- db.close();
35
- });
36
- it('orders a linear chain leaf-first: a->b->c => [c, b, a]', () => {
37
- const db = makeTempDb();
38
- insertNode(db, 'a');
39
- insertNode(db, 'b');
40
- insertNode(db, 'c');
41
- insertEdge(db, 'a', 'b');
42
- insertEdge(db, 'b', 'c');
43
- const result = topologicalLevelSort(db);
44
- // c has no outgoing IMPORTS => level 0, then b, then a
45
- expect(result.cycleCount).toBe(0);
46
- expect(result.levels.length).toBeGreaterThanOrEqual(2);
47
- const allNodes = result.levels.flat();
48
- expect(allNodes).toContain('a');
49
- expect(allNodes).toContain('b');
50
- expect(allNodes).toContain('c');
51
- // leaf (c) must appear before root (a)
52
- const levelC = result.levels.findIndex(l => l.includes('c'));
53
- const levelA = result.levels.findIndex(l => l.includes('a'));
54
- expect(levelC).toBeLessThan(levelA);
55
- db.close();
56
- });
57
- it('puts independent nodes in level 0', () => {
58
- const db = makeTempDb();
59
- insertNode(db, 'x');
60
- insertNode(db, 'y');
61
- // no edges
62
- const result = topologicalLevelSort(db);
63
- expect(result.levels.length).toBe(1);
64
- expect(result.levels[0]).toContain('x');
65
- expect(result.levels[0]).toContain('y');
66
- expect(result.cycleCount).toBe(0);
67
- db.close();
68
- });
69
- it('detects a cycle and appends cycle nodes at end', () => {
70
- const db = makeTempDb();
71
- insertNode(db, 'a');
72
- insertNode(db, 'b');
73
- insertEdge(db, 'a', 'b');
74
- insertEdge(db, 'b', 'a');
75
- const result = topologicalLevelSort(db);
76
- expect(result.cycleCount).toBeGreaterThan(0);
77
- // cycle nodes must still appear somewhere in levels
78
- const allNodes = result.levels.flat();
79
- expect(allNodes).toContain('a');
80
- expect(allNodes).toContain('b');
81
- db.close();
82
- });
83
- it('handles diamond dependency: a->b, a->c, b->d, c->d', () => {
84
- const db = makeTempDb();
85
- ['a', 'b', 'c', 'd'].forEach(n => insertNode(db, n));
86
- insertEdge(db, 'a', 'b');
87
- insertEdge(db, 'a', 'c');
88
- insertEdge(db, 'b', 'd');
89
- insertEdge(db, 'c', 'd');
90
- const result = topologicalLevelSort(db);
91
- expect(result.cycleCount).toBe(0);
92
- const allNodes = result.levels.flat();
93
- expect(allNodes.sort()).toEqual(['a', 'b', 'c', 'd'].sort());
94
- // d must appear in earlier level than a
95
- const levelD = result.levels.findIndex(l => l.includes('d'));
96
- const levelA = result.levels.findIndex(l => l.includes('a'));
97
- expect(levelD).toBeLessThan(levelA);
98
- db.close();
99
- });
100
- });
101
- //# sourceMappingURL=topo-sort.test.js.map
@@ -1 +0,0 @@
1
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