@monoes/monograph 1.3.0 → 1.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (301) hide show
  1. package/.monomind/registry.json +6 -0
  2. package/__tests__/staleness/git-staleness.test.ts +3 -3
  3. package/dist/src/analysis/benchmark.js.map +1 -1
  4. package/dist/src/analysis/changed-files.d.ts.map +1 -1
  5. package/dist/src/analysis/changed-files.js +11 -2
  6. package/dist/src/analysis/changed-files.js.map +1 -1
  7. package/dist/src/analysis/changed-workspaces.d.ts.map +1 -1
  8. package/dist/src/analysis/changed-workspaces.js +11 -3
  9. package/dist/src/analysis/changed-workspaces.js.map +1 -1
  10. package/dist/src/analysis/churn.d.ts +1 -1
  11. package/dist/src/analysis/churn.d.ts.map +1 -1
  12. package/dist/src/analysis/churn.js +56 -10
  13. package/dist/src/analysis/churn.js.map +1 -1
  14. package/dist/src/analysis/cluster-quality.d.ts +4 -4
  15. package/dist/src/analysis/cluster-quality.d.ts.map +1 -1
  16. package/dist/src/analysis/cluster-quality.js +24 -27
  17. package/dist/src/analysis/cluster-quality.js.map +1 -1
  18. package/dist/src/analysis/combined.d.ts.map +1 -1
  19. package/dist/src/analysis/combined.js +2 -0
  20. package/dist/src/analysis/combined.js.map +1 -1
  21. package/dist/src/analysis/feature-flags.d.ts.map +1 -1
  22. package/dist/src/analysis/feature-flags.js +11 -5
  23. package/dist/src/analysis/feature-flags.js.map +1 -1
  24. package/dist/src/analysis/progress.d.ts.map +1 -1
  25. package/dist/src/analysis/project-state.d.ts.map +1 -1
  26. package/dist/src/analysis/shape-extractor.js.map +1 -1
  27. package/dist/src/analysis/suppression-context.d.ts.map +1 -1
  28. package/dist/src/analysis/surprise-scorer.js.map +1 -1
  29. package/dist/src/analysis/targets.d.ts.map +1 -1
  30. package/dist/src/analysis/targets.js +4 -5
  31. package/dist/src/analysis/targets.js.map +1 -1
  32. package/dist/src/analysis/worker-pool.d.ts.map +1 -1
  33. package/dist/src/analysis/worker-pool.js.map +1 -1
  34. package/dist/src/analyze/unused-deps.js.map +1 -1
  35. package/dist/src/analyze/unused-exports.js.map +1 -1
  36. package/dist/src/analyze/unused-files.js.map +1 -1
  37. package/dist/src/cache/augment-cache.js.map +1 -1
  38. package/dist/src/cache/extraction-cache.d.ts +21 -0
  39. package/dist/src/cache/extraction-cache.d.ts.map +1 -1
  40. package/dist/src/cache/extraction-cache.js +62 -6
  41. package/dist/src/cache/extraction-cache.js.map +1 -1
  42. package/dist/src/check/index.js.map +1 -1
  43. package/dist/src/cli/check-update.js.map +1 -1
  44. package/dist/src/cli/doctor.d.ts.map +1 -1
  45. package/dist/src/cli/doctor.js +6 -10
  46. package/dist/src/cli/doctor.js.map +1 -1
  47. package/dist/src/config/boundary-config.js.map +1 -1
  48. package/dist/src/config/config-parsing.d.ts +1 -1
  49. package/dist/src/config/config-parsing.d.ts.map +1 -1
  50. package/dist/src/config/migration-types.d.ts +2 -2
  51. package/dist/src/config/migration-types.d.ts.map +1 -1
  52. package/dist/src/config/migration-types.js.map +1 -1
  53. package/dist/src/config/used-class-members.js.map +1 -1
  54. package/dist/src/config/workspace.js.map +1 -1
  55. package/dist/src/coverage/upload-source-maps.js.map +1 -1
  56. package/dist/src/duplicates/detect/filtering.d.ts.map +1 -1
  57. package/dist/src/duplicates/shingle-filter.js.map +1 -1
  58. package/dist/src/error/fallow-error.d.ts.map +1 -1
  59. package/dist/src/error/fallow-error.js.map +1 -1
  60. package/dist/src/error.d.ts.map +1 -1
  61. package/dist/src/error.js.map +1 -1
  62. package/dist/src/export/analysis-json.js +1 -1
  63. package/dist/src/export/analysis-json.js.map +1 -1
  64. package/dist/src/export/badge.js.map +1 -1
  65. package/dist/src/export/dot.js.map +1 -1
  66. package/dist/src/export/sarif.d.ts.map +1 -1
  67. package/dist/src/export/sarif.js +13 -2
  68. package/dist/src/export/sarif.js.map +1 -1
  69. package/dist/src/fix/orchestrator.js.map +1 -1
  70. package/dist/src/graph/baseline.d.ts.map +1 -1
  71. package/dist/src/graph/baseline.js +29 -20
  72. package/dist/src/graph/baseline.js.map +1 -1
  73. package/dist/src/graph/cycle-detection.js.map +1 -1
  74. package/dist/src/graph/dead-code.d.ts +7 -2
  75. package/dist/src/graph/dead-code.d.ts.map +1 -1
  76. package/dist/src/graph/dead-code.js +19 -16
  77. package/dist/src/graph/dead-code.js.map +1 -1
  78. package/dist/src/graph/dfs.js.map +1 -1
  79. package/dist/src/graph/edge-filter.js.map +1 -1
  80. package/dist/src/graph/health-score.d.ts.map +1 -1
  81. package/dist/src/graph/health-score.js +11 -14
  82. package/dist/src/graph/health-score.js.map +1 -1
  83. package/dist/src/graph/hotspots.d.ts.map +1 -1
  84. package/dist/src/graph/hotspots.js +8 -4
  85. package/dist/src/graph/hotspots.js.map +1 -1
  86. package/dist/src/graph/import-chain.js.map +1 -1
  87. package/dist/src/graph/merge.js.map +1 -1
  88. package/dist/src/graph/node-search.js.map +1 -1
  89. package/dist/src/graph/node-types.d.ts.map +1 -1
  90. package/dist/src/graph/pagerank.d.ts.map +1 -1
  91. package/dist/src/graph/pagerank.js +10 -1
  92. package/dist/src/graph/pagerank.js.map +1 -1
  93. package/dist/src/graph/regex-search.js.map +1 -1
  94. package/dist/src/graph/regression.d.ts.map +1 -1
  95. package/dist/src/graph/resolve/discover-types.js.map +1 -1
  96. package/dist/src/graph/resolve/types.d.ts +3 -3
  97. package/dist/src/graph/resolve/types.d.ts.map +1 -1
  98. package/dist/src/graph/statistics.d.ts +3 -2
  99. package/dist/src/graph/statistics.d.ts.map +1 -1
  100. package/dist/src/graph/statistics.js +18 -7
  101. package/dist/src/graph/statistics.js.map +1 -1
  102. package/dist/src/graph/stats.d.ts.map +1 -1
  103. package/dist/src/graph/stats.js +2 -1
  104. package/dist/src/graph/stats.js.map +1 -1
  105. package/dist/src/groups/group-search.d.ts.map +1 -1
  106. package/dist/src/groups/group-search.js +9 -18
  107. package/dist/src/groups/group-search.js.map +1 -1
  108. package/dist/src/health/complexity-findings.js.map +1 -1
  109. package/dist/src/health/grouping.js.map +1 -1
  110. package/dist/src/health/health-report-types.js.map +1 -1
  111. package/dist/src/health/health-report.js.map +1 -1
  112. package/dist/src/health/targets.js.map +1 -1
  113. package/dist/src/index.d.ts +3 -0
  114. package/dist/src/index.d.ts.map +1 -1
  115. package/dist/src/index.js +3 -0
  116. package/dist/src/index.js.map +1 -1
  117. package/dist/src/ingest/transcribe.js.map +1 -1
  118. package/dist/src/ingest/url-ingest.js.map +1 -1
  119. package/dist/src/license/manager.d.ts.map +1 -1
  120. package/dist/src/license/manager.js.map +1 -1
  121. package/dist/src/lsp/diagnostics-push.js.map +1 -1
  122. package/dist/src/mcp-tools/impact.d.ts.map +1 -1
  123. package/dist/src/mcp-tools/impact.js +7 -1
  124. package/dist/src/mcp-tools/impact.js.map +1 -1
  125. package/dist/src/mcp-tools/list-repos.d.ts +1 -1
  126. package/dist/src/mcp-tools/list-repos.d.ts.map +1 -1
  127. package/dist/src/mcp-tools/query.d.ts +1 -1
  128. package/dist/src/mcp-tools/query.d.ts.map +1 -1
  129. package/dist/src/parsers/c.js.map +1 -1
  130. package/dist/src/parsers/cpp.js.map +1 -1
  131. package/dist/src/parsers/csharp.js.map +1 -1
  132. package/dist/src/parsers/dart.js.map +1 -1
  133. package/dist/src/parsers/go.js.map +1 -1
  134. package/dist/src/parsers/java.js.map +1 -1
  135. package/dist/src/parsers/kotlin.js.map +1 -1
  136. package/dist/src/parsers/loader.js.map +1 -1
  137. package/dist/src/parsers/php.js.map +1 -1
  138. package/dist/src/parsers/python.js.map +1 -1
  139. package/dist/src/parsers/ruby.js.map +1 -1
  140. package/dist/src/parsers/rust.js.map +1 -1
  141. package/dist/src/parsers/swift.js.map +1 -1
  142. package/dist/src/parsers/typescript.js.map +1 -1
  143. package/dist/src/parsers/vue.js.map +1 -1
  144. package/dist/src/pipeline/effort.js.map +1 -1
  145. package/dist/src/pipeline/orchestrator.d.ts.map +1 -1
  146. package/dist/src/pipeline/orchestrator.js +85 -24
  147. package/dist/src/pipeline/orchestrator.js.map +1 -1
  148. package/dist/src/pipeline/phases/bridge-adapters/electron-ipc.d.ts +11 -0
  149. package/dist/src/pipeline/phases/bridge-adapters/electron-ipc.d.ts.map +1 -0
  150. package/dist/src/pipeline/phases/bridge-adapters/electron-ipc.js +96 -0
  151. package/dist/src/pipeline/phases/bridge-adapters/electron-ipc.js.map +1 -0
  152. package/dist/src/pipeline/phases/bridge-adapters/registry.d.ts +3 -0
  153. package/dist/src/pipeline/phases/bridge-adapters/registry.d.ts.map +1 -0
  154. package/dist/src/pipeline/phases/bridge-adapters/registry.js +13 -0
  155. package/dist/src/pipeline/phases/bridge-adapters/registry.js.map +1 -0
  156. package/dist/src/pipeline/phases/bridge-adapters/tauri.d.ts +10 -0
  157. package/dist/src/pipeline/phases/bridge-adapters/tauri.d.ts.map +1 -0
  158. package/dist/src/pipeline/phases/bridge-adapters/tauri.js +104 -0
  159. package/dist/src/pipeline/phases/bridge-adapters/tauri.js.map +1 -0
  160. package/dist/src/pipeline/phases/bridge-adapters/types.d.ts +30 -0
  161. package/dist/src/pipeline/phases/bridge-adapters/types.d.ts.map +1 -0
  162. package/dist/src/pipeline/phases/bridge-adapters/types.js +2 -0
  163. package/dist/src/pipeline/phases/bridge-adapters/types.js.map +1 -0
  164. package/dist/src/pipeline/phases/bridge-adapters/wails.d.ts +10 -0
  165. package/dist/src/pipeline/phases/bridge-adapters/wails.d.ts.map +1 -0
  166. package/dist/src/pipeline/phases/bridge-adapters/wails.js +27 -0
  167. package/dist/src/pipeline/phases/bridge-adapters/wails.js.map +1 -0
  168. package/dist/src/pipeline/phases/bridge-resolver.d.ts +23 -0
  169. package/dist/src/pipeline/phases/bridge-resolver.d.ts.map +1 -0
  170. package/dist/src/pipeline/phases/bridge-resolver.js +70 -0
  171. package/dist/src/pipeline/phases/bridge-resolver.js.map +1 -0
  172. package/dist/src/pipeline/phases/cross-file.d.ts.map +1 -1
  173. package/dist/src/pipeline/phases/cross-file.js +70 -27
  174. package/dist/src/pipeline/phases/cross-file.js.map +1 -1
  175. package/dist/src/pipeline/phases/leiden.js.map +1 -1
  176. package/dist/src/pipeline/phases/parse.d.ts.map +1 -1
  177. package/dist/src/pipeline/phases/parse.js +58 -17
  178. package/dist/src/pipeline/phases/parse.js.map +1 -1
  179. package/dist/src/pipeline/phases/scan.d.ts.map +1 -1
  180. package/dist/src/pipeline/phases/scan.js +12 -5
  181. package/dist/src/pipeline/phases/scan.js.map +1 -1
  182. package/dist/src/pipeline/phases/scope-resolution.d.ts +13 -0
  183. package/dist/src/pipeline/phases/scope-resolution.d.ts.map +1 -1
  184. package/dist/src/pipeline/phases/scope-resolution.js +18 -4
  185. package/dist/src/pipeline/phases/scope-resolution.js.map +1 -1
  186. package/dist/src/pipeline/progress.d.ts.map +1 -1
  187. package/dist/src/pipeline/runner.d.ts.map +1 -1
  188. package/dist/src/pipeline/runner.js.map +1 -1
  189. package/dist/src/pipeline/types.d.ts +2 -0
  190. package/dist/src/pipeline/types.d.ts.map +1 -1
  191. package/dist/src/pipeline/types.js +1 -0
  192. package/dist/src/pipeline/types.js.map +1 -1
  193. package/dist/src/regression/baseline.js.map +1 -1
  194. package/dist/src/regression/outcome.js.map +1 -1
  195. package/dist/src/report/badge-svg.js.map +1 -1
  196. package/dist/src/report/duplication-grouping.js.map +1 -1
  197. package/dist/src/report/human-check.js.map +1 -1
  198. package/dist/src/report/human-dupes.js.map +1 -1
  199. package/dist/src/report/human-health.js.map +1 -1
  200. package/dist/src/report/json-builders.js.map +1 -1
  201. package/dist/src/report/number-format.js.map +1 -1
  202. package/dist/src/reporting/graph-report.d.ts.map +1 -1
  203. package/dist/src/reporting/graph-report.js +8 -9
  204. package/dist/src/reporting/graph-report.js.map +1 -1
  205. package/dist/src/scope-resolution/evidence-weights.d.ts.map +1 -1
  206. package/dist/src/search/hybrid-query.js.map +1 -1
  207. package/dist/src/security/safe-fetch.js.map +1 -1
  208. package/dist/src/staleness/git-staleness.d.ts.map +1 -1
  209. package/dist/src/staleness/git-staleness.js +5 -2
  210. package/dist/src/staleness/git-staleness.js.map +1 -1
  211. package/dist/src/storage/db.d.ts +13 -1
  212. package/dist/src/storage/db.d.ts.map +1 -1
  213. package/dist/src/storage/db.js +23 -2
  214. package/dist/src/storage/db.js.map +1 -1
  215. package/dist/src/storage/edge-store.d.ts +6 -0
  216. package/dist/src/storage/edge-store.d.ts.map +1 -1
  217. package/dist/src/storage/edge-store.js +8 -1
  218. package/dist/src/storage/edge-store.js.map +1 -1
  219. package/dist/src/storage/fts-store.d.ts.map +1 -1
  220. package/dist/src/storage/fts-store.js +31 -9
  221. package/dist/src/storage/fts-store.js.map +1 -1
  222. package/dist/src/storage/node-store.js.map +1 -1
  223. package/dist/src/storage/schema.d.ts +5 -0
  224. package/dist/src/storage/schema.d.ts.map +1 -1
  225. package/dist/src/storage/schema.js +25 -0
  226. package/dist/src/storage/schema.js.map +1 -1
  227. package/dist/src/storage/unlinked-refs.js.map +1 -1
  228. package/dist/src/types.d.ts +2 -2
  229. package/dist/src/types.d.ts.map +1 -1
  230. package/dist/src/types.js.map +1 -1
  231. package/dist/src/watch/watcher.d.ts.map +1 -1
  232. package/dist/src/watch/watcher.js +12 -2
  233. package/dist/src/watch/watcher.js.map +1 -1
  234. package/dist/src/web/analyze-api.d.ts.map +1 -1
  235. package/dist/src/web/analyze-api.js +3 -1
  236. package/dist/src/web/analyze-api.js.map +1 -1
  237. package/dist/src/web/api.d.ts +3 -0
  238. package/dist/src/web/api.d.ts.map +1 -1
  239. package/dist/src/web/api.js +59 -20
  240. package/dist/src/web/api.js.map +1 -1
  241. package/dist/src/web/async-jobs.d.ts.map +1 -1
  242. package/dist/src/web/async-jobs.js +15 -0
  243. package/dist/src/web/async-jobs.js.map +1 -1
  244. package/dist/src/web/react-ui.js +2 -2
  245. package/dist/src/wiki/providers.js.map +1 -1
  246. package/dist/src/wiki/wiki-generator.d.ts.map +1 -1
  247. package/dist/src/wiki/wiki-generator.js +9 -6
  248. package/dist/src/wiki/wiki-generator.js.map +1 -1
  249. package/dist/tsconfig.tsbuildinfo +1 -1
  250. package/package.json +5 -2
  251. package/src/__tests__/graph/dead-code.test.ts +27 -7
  252. package/src/__tests__/pipeline/phases/bridge-adapters/electron-ipc.test.ts +87 -0
  253. package/src/__tests__/pipeline/phases/bridge-adapters/tauri.test.ts +116 -0
  254. package/src/__tests__/pipeline/phases/bridge-adapters/wails.test.ts +81 -0
  255. package/src/__tests__/pipeline/phases/bridge-resolver.test.ts +110 -0
  256. package/src/analysis/changed-files.ts +14 -2
  257. package/src/analysis/changed-workspaces.ts +13 -4
  258. package/src/analysis/churn.ts +57 -10
  259. package/src/analysis/cluster-quality.ts +25 -26
  260. package/src/analysis/combined.ts +2 -0
  261. package/src/analysis/feature-flags.ts +10 -5
  262. package/src/analysis/targets.ts +4 -5
  263. package/src/cache/extraction-cache.ts +59 -6
  264. package/src/cli/doctor.ts +6 -10
  265. package/src/export/analysis-json.ts +1 -1
  266. package/src/export/sarif.ts +11 -2
  267. package/src/graph/baseline.ts +29 -20
  268. package/src/graph/dead-code.ts +19 -16
  269. package/src/graph/health-score.ts +13 -16
  270. package/src/graph/hotspots.ts +8 -4
  271. package/src/graph/pagerank.ts +10 -1
  272. package/src/graph/statistics.ts +19 -7
  273. package/src/graph/stats.ts +2 -1
  274. package/src/groups/group-search.ts +9 -27
  275. package/src/index.ts +3 -0
  276. package/src/mcp-tools/impact.ts +7 -1
  277. package/src/pipeline/orchestrator.ts +87 -26
  278. package/src/pipeline/phases/bridge-adapters/electron-ipc.ts +91 -0
  279. package/src/pipeline/phases/bridge-adapters/registry.ts +14 -0
  280. package/src/pipeline/phases/bridge-adapters/tauri.ts +103 -0
  281. package/src/pipeline/phases/bridge-adapters/types.ts +31 -0
  282. package/src/pipeline/phases/bridge-adapters/wails.ts +33 -0
  283. package/src/pipeline/phases/bridge-resolver.ts +77 -0
  284. package/src/pipeline/phases/cross-file.ts +75 -27
  285. package/src/pipeline/phases/parse.ts +60 -17
  286. package/src/pipeline/phases/scan.ts +11 -5
  287. package/src/pipeline/phases/scope-resolution.ts +19 -4
  288. package/src/pipeline/types.ts +3 -0
  289. package/src/reporting/graph-report.ts +8 -9
  290. package/src/staleness/git-staleness.ts +5 -2
  291. package/src/storage/db.ts +35 -1
  292. package/src/storage/edge-store.ts +8 -1
  293. package/src/storage/fts-store.ts +31 -9
  294. package/src/storage/schema.ts +30 -0
  295. package/src/watch/watcher.ts +11 -2
  296. package/src/web/analyze-api.ts +3 -1
  297. package/src/web/api.ts +62 -22
  298. package/src/web/async-jobs.ts +15 -0
  299. package/src/web/react-ui.ts +2 -2
  300. package/src/wiki/wiki-generator.ts +9 -6
  301. package/tsconfig.json +2 -1
package/dist/src/index.js CHANGED
@@ -16,6 +16,9 @@ export * from './export/html.js';
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  export * from './export/cypher.js';
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  export * from './export/graphml.js';
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  export * from './export/svg.js';
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+ export * from './export/obsidian.js';
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+ export * from './export/canvas.js';
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+ export * from './export/mermaid.js';
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  export * from './mcp-tools/index.js';
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  export * from './staleness/git-staleness.js';
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  export * from './search/rrf.js';
package/dist/src/index.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/src/mcp-tools/impact.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"impact.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/impact.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAsBjD,MAAM,MAAM,SAAS,GAAG,KAAK,GAAG,QAAQ,GAAG,MAAM,GAAG,UAAU,CAAC;AAE/D,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,SAAS,CAK7D;AAID,MAAM,WAAW,aAAa;IAC5B,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAID,MAAM,WAAW,qBAAqB;IACpC,IAAI,EAAE,aAAa,GAAG,IAAI,CAAC;IAC3B,aAAa,EAAE,aAAa,EAAE,CAAC;IAC/B,iBAAiB,EAAE,KAAK,CAAC;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,aAAa,EAAE,CAAA;KAAE,CAAC,CAAC;IACpE,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,SAAS,CAAC;CACtB;AAkDD,wBAAgB,kBAAkB,CAChC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,KAAK,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,GACzD,qBAAqB,CAyBvB;AAwDD,wBAAsB,eAAe,CACnC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,qBAAqB,CAAC,CAchC"}
package/dist/src/mcp-tools/impact.js CHANGED
@@ -27,7 +27,13 @@ export function computeRiskLevel(riskScore) {
27
27
  function reverseBfs(startNodeId, db, maxDepth, options = {}) {
28
28
  const visited = new Map([[startNodeId, 0]]);
29
29
  const queue = [{ id: startNodeId, depth: 0 }];
30
- const relations = options.relationTypes ?? ['CALLS'];
30
+ // Default to a broad set of relation types, not just CALLS — a class extended
31
+ // in 20 files, or a function only ever referenced via import/re-export (never
32
+ // directly called), should still show up in the blast radius. A narrow default
33
+ // reports "0 symbols affected, risk LOW" for changes that are anything but low
34
+ // risk. Callers that need the old narrow/fast behavior can still pass
35
+ // relationTypes: ['CALLS'] explicitly.
36
+ const relations = options.relationTypes ?? ['CALLS', 'IMPORTS', 'REFERENCES', 'EXTENDS', 'RE_EXPORTS'];
31
37
  const placeholders = relations.map(() => '?').join(',');
32
38
  const baseQuery = `SELECT source_id FROM edges WHERE target_id = ? AND relation IN (${placeholders})`;
33
39
  const query = options.minConfidenceScore !== undefined
package/dist/src/mcp-tools/impact.js.map CHANGED
@@ -1 +1 @@
1
- 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1
+ 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package/dist/src/mcp-tools/list-repos.d.ts CHANGED
@@ -11,7 +11,7 @@ export declare const listReposTool: {
11
11
  name: string;
12
12
  description: string;
13
13
  inputSchema: {
14
- type: "object";
14
+ type: 'object';
15
15
  properties: {};
16
16
  required: string[];
17
17
  };
package/dist/src/mcp-tools/list-repos.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"list-repos.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/list-repos.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,KAAK,CAAC;QACX,IAAI,EAAE,MAAM,CAAC;QACb,IAAI,EAAE,MAAM,CAAC;QACb,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,OAAO,CAAC;QAChB,SAAS,CAAC,EAAE,MAAM,CAAC;KACpB,CAAC,CAAC;CACJ;AAED,eAAO,MAAM,aAAa;;;;;;kBAMN,MAAM,EAAE;;mBAEL,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,OAAO,CAAC,eAAe,CAAC;CAexE,CAAC"}
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+ {"version":3,"file":"list-repos.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/list-repos.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,KAAK,CAAC;QACX,IAAI,EAAE,MAAM,CAAC;QACb,IAAI,EAAE,MAAM,CAAC;QACb,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,OAAO,CAAC;QAChB,SAAS,CAAC,EAAE,MAAM,CAAC;KACpB,CAAC,CAAC;CACJ;AAED,eAAO,MAAM,aAAa;IACxB,IAAI;IACJ,WAAW;IACX,WAAW;QACT,IAAI,EAAE,QAAQ;QACd,UAAU;QACV,QAAQ,EAAQ,MAAM,EAAE;;IAEpB,OAAO,QAAQ,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,OAAO,CAAC,eAAe,CAAC;CAexE,CAAC"}
package/dist/src/mcp-tools/query.d.ts CHANGED
@@ -19,7 +19,7 @@ export declare const monographQueryTool: {
19
19
  name: string;
20
20
  description: string;
21
21
  inputSchema: {
22
- type: "object";
22
+ type: 'object';
23
23
  properties: {
24
24
  query: {
25
25
  type: string;
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package/dist/src/parsers/php.js.map CHANGED
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+ {"version":3,"file":"effort.js","sourceRoot":"","sources":["../../../src/pipeline/effort.ts"],"names":[],"mappings":"AAYA,MAAM,eAAe,GAA0C;IAC7D,GAAG,EAAE;QACH,QAAQ,EAAE,KAAK;QACf,YAAY,EAAE,KAAK;QACnB,WAAW,EAAE,KAAK;QAClB,aAAa,EAAE,IAAI;QACnB,cAAc,EAAE,KAAK;QACrB,iBAAiB,EAAE,KAAK;QACxB,4BAA4B,EAAE,GAAG;KAClC;IACD,MAAM,EAAE;QACN,QAAQ,EAAE,IAAI;QACd,YAAY,EAAE,KAAK;QACnB,WAAW,EAAE,IAAI;QACjB,aAAa,EAAE,IAAI;QACnB,cAAc,EAAE,KAAK;QACrB,iBAAiB,EAAE,IAAI;QACvB,4BAA4B,EAAE,GAAG;KAClC;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,IAAI;QACd,YAAY,EAAE,IAAI;QAClB,WAAW,EAAE,IAAI;QACjB,aAAa,EAAE,IAAI;QACnB,cAAc,EAAE,IAAI;QACpB,iBAAiB,EAAE,IAAI;QACvB,4BAA4B,EAAE,QAAQ;KACvC;CACF,CAAC;AAEF,MAAM,UAAU,gBAAgB,CAAC,MAAM,GAAmB,QAAQ;IAChE,OAAO,eAAe,CAAC,MAAM,CAAC,CAAC;AACjC,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,CAAS;IACnC,IAAI,CAAC,KAAK,KAAK,IAAI,CAAC,KAAK,QAAQ,IAAI,CAAC,KAAK,MAAM;QAAE,OAAO,CAAC,CAAC;IAC5D,OAAO,QAAQ,CAAC;AAClB,CAAC"}
package/dist/src/pipeline/orchestrator.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"orchestrator.d.ts","sourceRoot":"","sources":["../../../src/pipeline/orchestrator.ts"],"names":[],"mappings":"AAwBA,OAAO,KAAK,EAAE,eAAe,EAAmB,MAAM,YAAY,CAAC;AAEnE,OAAO,KAAK,EAAE,gBAAgB,EAAqB,MAAM,aAAa,CAAC;AAWvE,MAAM,WAAW,YAAa,SAAQ,OAAO,CAAC,eAAe,CAAC;IAC5D,UAAU,CAAC,EAAE,CAAC,CAAC,EAAE,gBAAgB,KAAK,IAAI,CAAC;IAC3C,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,oGAAoG;IACpG,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AA8BD,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CAc5F"}
1
+ {"version":3,"file":"orchestrator.d.ts","sourceRoot":"","sources":["../../../src/pipeline/orchestrator.ts"],"names":[],"mappings":"AAyBA,OAAO,KAAK,EAAE,eAAe,EAAmB,MAAM,YAAY,CAAC;AAEnE,OAAO,KAAK,EAAE,gBAAgB,EAAqB,MAAM,aAAa,CAAC;AAavE,MAAM,WAAW,YAAa,SAAQ,OAAO,CAAC,eAAe,CAAC;IAC5D,UAAU,CAAC,EAAE,CAAC,CAAC,EAAE,gBAAgB,KAAK,IAAI,CAAC;IAC3C,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,oGAAoG;IACpG,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AA8BD,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CAe5F"}
package/dist/src/pipeline/orchestrator.js CHANGED
@@ -11,7 +11,7 @@ import { routesPhase } from './phases/routes.js';
11
11
  import { toolsPhase } from './phases/tools.js';
12
12
  import { ormPhase } from './phases/orm.js';
13
13
  import { crossFilePhase } from './phases/cross-file.js';
14
- import { scopeResolutionPhase } from './phases/scope-resolution.js';
14
+ import { scopeResolutionPhase, clearWorkspacePackageMapCache } from './phases/scope-resolution.js';
15
15
  import { mroPhase } from './phases/mro.js';
16
16
  import { communitiesPhase } from './phases/communities.js';
17
17
  import { processesPhase } from './phases/processes.js';
@@ -22,8 +22,11 @@ import { variablesPhase } from './phases/variables-phase.js';
22
22
  import { wildcardSynthesisPhase } from './phases/wildcard-phase.js';
23
23
  import { frameworkDetectPhase } from './phases/framework-detect.js';
24
24
  import { importResolverPhase } from './phases/import-resolver.js';
25
+ import { bridgeResolverPhase } from './phases/bridge-resolver.js';
25
26
  import { DEFAULT_OPTIONS } from './types.js';
26
27
  import { generateGraphReport } from '../reporting/graph-report.js';
28
+ import { analyzeChurn } from '../analysis/churn.js';
29
+ import { ExtractionCache } from '../cache/extraction-cache.js';
27
30
  function getCurrentCommitHash(repoPath) {
28
31
  try {
29
32
  return execSync('git rev-parse HEAD', { cwd: repoPath, encoding: 'utf8' }).trim();
@@ -84,6 +87,7 @@ async function acquireBuildLock(dbPath) {
84
87
  export async function buildAsync(repoPath, options = {}) {
85
88
  const dbPath = resolve(join(repoPath, '.monomind', 'monograph.db'));
86
89
  const fullOptions = { ...DEFAULT_OPTIONS, ...options };
90
+ clearWorkspacePackageMapCache(repoPath);
87
91
  const releaseLock = await acquireBuildLock(dbPath);
88
92
  if (!releaseLock) {
89
93
  options.onProgress?.({ phase: 'skip', message: 'Another build is in progress — skipping' });
@@ -116,6 +120,20 @@ async function buildAsyncLocked(repoPath, dbPath, fullOptions, options) {
116
120
  }
117
121
  }
118
122
  }
123
+ // Parse-cache eviction — runs once at the start of a full (non-incremental)
124
+ // build. The cache only ever grows via writes (parse.ts's ExtractionCache);
125
+ // nothing else prunes entries for files that were deleted/renamed or
126
+ // haven't been touched in a long time, so it accumulates forever otherwise.
127
+ if (!options.incremental) {
128
+ try {
129
+ const parseCache = new ExtractionCache(resolve(join(repoPath, '.monomind', 'parse-cache')));
130
+ const removed = parseCache.prune();
131
+ if (removed > 0) {
132
+ options.onProgress?.({ phase: 'prune', message: `Parse cache: pruned ${removed} stale entries` });
133
+ }
134
+ }
135
+ catch { /* non-fatal — cache pruning must never block a build */ }
136
+ }
119
137
  const db = openDb(dbPath);
120
138
  try {
121
139
  const graph = new Graph({ multi: true, type: 'directed' });
@@ -129,41 +147,84 @@ async function buildAsyncLocked(repoPath, dbPath, fullOptions, options) {
129
147
  scanPhase, frameworkDetectPhase, structurePhase, parsePhase, variablesPhase,
130
148
  markdownPhase, routesPhase, toolsPhase, ormPhase,
131
149
  crossFilePhase, wildcardSynthesisPhase, importResolverPhase, scopeResolutionPhase,
150
+ bridgeResolverPhase,
132
151
  mroPhase, communitiesPhase, processesPhase, godNodesPhase, surprisesPhase, suggestPhase,
133
152
  ]);
134
153
  const outputs = await runner.run(ctx);
135
- // Skip post-pipeline work when all files were cached (nothing changed)
136
- if (!ctx.allFilesCached) {
137
- // Sweep orphaned rows for files that were renamed/deleted since the last build.
138
- const scanOut = outputs.get('scan');
139
- if (scanOut) {
140
- const liveFiles = new Set(scanOut.filePaths.map((f) => resolve(f)));
141
- const staleFiles = db.prepare('SELECT DISTINCT file_path FROM nodes WHERE file_path IS NOT NULL').all()
142
- .map((r) => r.file_path)
143
- .filter((f) => !liveFiles.has(resolve(ctx.repoPath, f)));
144
- if (staleFiles.length > 0) {
145
- const deleteStale = db.transaction((files) => {
146
- const deleteEdges = db.prepare(`
147
- DELETE FROM edges WHERE source_id IN (SELECT id FROM nodes WHERE file_path = ?)
148
- OR target_id IN (SELECT id FROM nodes WHERE file_path = ?)
149
- `);
150
- const deleteNodesStmt = db.prepare('DELETE FROM nodes WHERE file_path = ?');
151
- for (const f of files) {
152
- deleteEdges.run(f, f);
153
- deleteNodesStmt.run(f);
154
- }
155
- });
156
- deleteStale(staleFiles);
157
- }
154
+ // Sweep orphaned rows for files that were renamed/deleted since the last build.
155
+ // This MUST run unconditionally — even when every remaining file cache-hit
156
+ // (ctx.allFilesCached === true), a file may have been deleted from disk between
157
+ // builds, which produces zero cache misses but still leaves ghost rows in the DB
158
+ // unless we compare the DB's known file set against the current on-disk set.
159
+ const scanOut = outputs.get('scan');
160
+ if (scanOut) {
161
+ const liveFiles = new Set(scanOut.filePaths.map((f) => resolve(f)));
162
+ const staleFiles = db.prepare('SELECT DISTINCT file_path FROM nodes WHERE file_path IS NOT NULL').all()
163
+ .map((r) => r.file_path)
164
+ .filter((f) => !liveFiles.has(resolve(ctx.repoPath, f)));
165
+ if (staleFiles.length > 0) {
166
+ const deleteStale = db.transaction((files) => {
167
+ const deleteEdges = db.prepare(`
168
+ DELETE FROM edges WHERE source_id IN (SELECT id FROM nodes WHERE file_path = ?)
169
+ OR target_id IN (SELECT id FROM nodes WHERE file_path = ?)
170
+ `);
171
+ const deleteNodesStmt = db.prepare('DELETE FROM nodes WHERE file_path = ?');
172
+ for (const f of files) {
173
+ deleteEdges.run(f, f);
174
+ deleteNodesStmt.run(f);
175
+ }
176
+ });
177
+ deleteStale(staleFiles);
158
178
  }
179
+ }
180
+ // Skip expensive report regeneration when all files were cached (nothing changed) —
181
+ // this is purely a performance optimization, not correctness-critical, so it stays
182
+ // gated behind allFilesCached.
183
+ if (!ctx.allFilesCached) {
159
184
  const suggestOut = outputs.get('suggest');
160
185
  const questions = suggestOut?.questions ?? [];
161
186
  await generateGraphReport(resolve(repoPath), undefined, dbPath, questions);
162
187
  }
188
+ // Populate churnScore on File nodes from git history (6-month window)
189
+ try {
190
+ const churnResult = await analyzeChurn(ctx.repoPath, '6m');
191
+ if (churnResult.files.length > 0) {
192
+ // Only consider files that exist as graph nodes for normalization —
193
+ // build artifacts and config files inflate the denominator otherwise
194
+ const graphFiles = new Set(db.prepare("SELECT file_path FROM nodes WHERE label = 'File' AND file_path IS NOT NULL").all()
195
+ .map(r => r.file_path));
196
+ const graphChurn = churnResult.files.filter(f => graphFiles.has(f.path));
197
+ const maxWeighted = graphChurn.reduce((m, f) => f.weightedCommits > m ? f.weightedCommits : m, 0);
198
+ if (maxWeighted > 0) {
199
+ const updateProps = db.prepare(`
200
+ UPDATE nodes SET properties = json_set(COALESCE(properties, '{}'), '$.churnScore', ?)
201
+ WHERE file_path = ? AND label = 'File'
202
+ `);
203
+ db.transaction(() => {
204
+ for (const f of graphChurn) {
205
+ updateProps.run(f.weightedCommits / maxWeighted, f.path);
206
+ }
207
+ })();
208
+ }
209
+ }
210
+ }
211
+ catch {
212
+ // churn analysis is non-fatal (e.g. no git history)
213
+ }
163
214
  const hash = getCurrentCommitHash(resolve(repoPath));
164
215
  if (hash) {
165
216
  db.prepare("INSERT OR REPLACE INTO index_meta VALUES ('last_commit_hash', ?)").run(hash);
166
217
  }
218
+ else {
219
+ const msg = 'Could not determine git HEAD — staleness tracking will be unavailable';
220
+ if (options.onProgress) {
221
+ options.onProgress({ phase: 'warning', message: msg });
222
+ }
223
+ else {
224
+ process.stderr.write(`[monograph] ${msg}\n`);
225
+ }
226
+ }
227
+ db.prepare("INSERT OR REPLACE INTO index_meta VALUES ('indexed_at', ?)").run(new Date().toISOString());
167
228
  }
168
229
  finally {
169
230
  closeDb(db);