@monoes/monograph 1.1.0 → 1.2.1

package/dist/src/pipeline/phases/framework-detect.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/pipeline/phases/framework-detect.js

@@ -0,0 +1,87 @@
+import { existsSync, readFileSync } from 'fs';
+import { join } from 'path';
+const NPM_FRAMEWORK_MAP = {
+    'react': 'react', 'react-dom': 'react',
+    'vue': 'vue', '@vue/core': 'vue',
+    '@angular/core': 'angular',
+    'svelte': 'svelte',
+    'express': 'express',
+    'fastify': 'fastify',
+    '@nestjs/core': 'nestjs',
+    'koa': 'koa',
+};
+const PYTHON_FRAMEWORK_MAP = {
+    'Django': 'django', 'django': 'django',
+    'Flask': 'flask', 'flask': 'flask',
+    'fastapi': 'fastapi', 'FastAPI': 'fastapi',
+};
+export function detectFrameworks(repoPath) {
+    const detected = new Map();
+    let primaryLanguage = null;
+    const pkgPath = join(repoPath, 'package.json');
+    if (existsSync(pkgPath)) {
+        try {
+            const pkg = JSON.parse(readFileSync(pkgPath, 'utf8'));
+            const allDeps = { ...pkg.dependencies, ...pkg.devDependencies, ...pkg.peerDependencies };
+            for (const dep of Object.keys(allDeps)) {
+                const fw = NPM_FRAMEWORK_MAP[dep];
+                if (fw) {
+                    detected.set(fw, Math.max(detected.get(fw) ?? 0, 0.9));
+                    primaryLanguage = 'javascript';
+                }
+            }
+        }
+        catch { /* malformed JSON */ }
+    }
+    const reqPath = join(repoPath, 'requirements.txt');
+    if (existsSync(reqPath)) {
+        const lines = readFileSync(reqPath, 'utf8').split('\n');
+        for (const line of lines) {
+            const pkg = line.split(/[=><!]/)[0]?.trim() ?? '';
+            const fw = PYTHON_FRAMEWORK_MAP[pkg];
+            if (fw) {
+                detected.set(fw, Math.max(detected.get(fw) ?? 0, 0.9));
+                primaryLanguage = 'python';
+            }
+        }
+    }
+    const pomPath = join(repoPath, 'pom.xml');
+    if (existsSync(pomPath)) {
+        const pom = readFileSync(pomPath, 'utf8');
+        if (pom.includes('spring-boot') || pom.includes('spring-web')) {
+            detected.set('spring', Math.max(detected.get('spring') ?? 0, 0.85));
+            primaryLanguage = 'java';
+        }
+    }
+    const gemfilePath = join(repoPath, 'Gemfile');
+    if (existsSync(gemfilePath)) {
+        const gemfile = readFileSync(gemfilePath, 'utf8');
+        if (gemfile.includes("gem 'rails'") || gemfile.includes('gem "rails"')) {
+            detected.set('rails', Math.max(detected.get('rails') ?? 0, 0.9));
+            primaryLanguage = 'ruby';
+        }
+    }
+    const composerPath = join(repoPath, 'composer.json');
+    if (existsSync(composerPath)) {
+        try {
+            const composer = JSON.parse(readFileSync(composerPath, 'utf8'));
+            const reqs = { ...composer.require, ...composer['require-dev'] };
+            if (reqs['laravel/framework']) {
+                detected.set('laravel', Math.max(detected.get('laravel') ?? 0, 0.9));
+                primaryLanguage = 'php';
+            }
+        }
+        catch { /* malformed JSON */ }
+    }
+    const frameworks = [...detected.keys()];
+    const confidence = Object.fromEntries(detected);
+    return { frameworks, primaryLanguage, confidence };
+}
+export const frameworkDetectPhase = {
+    name: 'framework-detect',
+    deps: ['scan'],
+    async execute(ctx) {
+        return detectFrameworks(ctx.repoPath);
+    },
+};
+//# sourceMappingURL=framework-detect.js.map

package/dist/src/pipeline/phases/framework-detect.js.map

@@ -0,0 +1 @@
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package/dist/src/pipeline/phases/god-nodes.d.ts

@@ -1,7 +1,28 @@
 import type { PipelinePhase } from '../types.js';
 import type { GodNode } from '../../types.js';
+export type GodNodeCategory = 'HIGH_CENTRALITY' | 'BRIDGE_NODE' | 'ISOLATED_CLUSTER' | 'CHURN_HOTSPOT' | 'CIRCULAR_IMPORT' | 'UNREACHABLE';
+export interface ContributingFactor {
+    metric: string;
+    value: number;
+    threshold: number;
+}
+export interface GodNodesThresholds {
+    p75FanIn: number;
+    p90FanIn: number;
+    p95FanIn: number;
+    p75FanOut: number;
+    p90FanOut: number;
+}
 export interface GodNodesOutput {
-    godNodes: GodNode[];
+    godNodes: (GodNode & {
+        category: GodNodeCategory;
+        contributingFactors: ContributingFactor[];
+    })[];
+    thresholds: GodNodesThresholds;
 }
 export declare const godNodesPhase: PipelinePhase<GodNodesOutput>;
+/**
+ * Format god-node results as structured text with file:line hints for LLM navigation.
+ */
+export declare function formatGodNodes(output: GodNodesOutput): string;
 //# sourceMappingURL=god-nodes.d.ts.map

package/dist/src/pipeline/phases/god-nodes.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"god-nodes.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/god-nodes.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAClE,OAAO,KAAK,EAAE,OAAO,EAAiB,MAAM,gBAAgB,CAAC;AAM7D,MAAM,MAAM,eAAe,GACvB,iBAAiB,GACjB,aAAa,GACb,kBAAkB,GAClB,eAAe,GACf,iBAAiB,GACjB,aAAa,CAAC;AAElB,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,kBAAkB;IACjC,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,cAAc;IAC7B,QAAQ,EAAE,CAAC,OAAO,GAAG;QAAE,QAAQ,EAAE,eAAe,CAAC;QAAC,mBAAmB,EAAE,kBAAkB,EAAE,CAAA;KAAE,CAAC,EAAE,CAAC;IACjG,UAAU,EAAE,kBAAkB,CAAC;CAChC;AAQD,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,cAAc,CA8EvD,CAAC;AAEF;;GAEG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,cAAc,GAAG,MAAM,CA+B7D"}

package/dist/src/pipeline/phases/god-nodes.js

@@ -1,4 +1,10 @@
 const EXCLUDED_LABELS = new Set(['File', 'Folder', 'Community', 'Concept']);
+function percentile(sorted, p) {
+    if (sorted.length === 0)
+        return 0;
+    const idx = Math.floor((p / 100) * sorted.length);
+    return sorted[Math.min(idx, sorted.length - 1)];
+}
 export const godNodesPhase = {
     name: 'god-nodes',
     deps: ['cross-file', 'parse'],
@@ -12,17 +18,94 @@ export const godNodesPhase = {
             outDeg.set(e.sourceId, (outDeg.get(e.sourceId) ?? 0) + 1);
             inDeg.set(e.targetId, (inDeg.get(e.targetId) ?? 0) + 1);
         }
+        // Compute degree distributions from all symbol nodes in a single pass
+        // (avoids two separate filter + map passes over potentially large arrays)
+        const allFanIn = [];
+        const allFanOut = [];
+        for (const n of symbolNodes) {
+            if (EXCLUDED_LABELS.has(n.label))
+                continue;
+            allFanIn.push(inDeg.get(n.id) ?? 0);
+            allFanOut.push(outDeg.get(n.id) ?? 0);
+        }
+        allFanIn.sort((a, b) => a - b);
+        allFanOut.sort((a, b) => a - b);
+        const thresholds = {
+            p75FanIn: percentile(allFanIn, 75),
+            p90FanIn: percentile(allFanIn, 90),
+            p95FanIn: percentile(allFanIn, 95),
+            p75FanOut: percentile(allFanOut, 75),
+            p90FanOut: percentile(allFanOut, 90),
+        };
+        const p95FanIn = thresholds.p95FanIn;
+        const p75FanIn = thresholds.p75FanIn;
+        const p75FanOut = thresholds.p75FanOut;
         const godNodes = symbolNodes
-            .filter(n => !EXCLUDED_LABELS.has(n.label) && (inDeg.get(n.id) ?? 0) + (outDeg.get(n.id) ?? 0) > 0)
-            .map(n => ({
-            ...n,
-            inDegree: inDeg.get(n.id) ?? 0,
-            outDegree: outDeg.get(n.id) ?? 0,
-            degree: (inDeg.get(n.id) ?? 0) + (outDeg.get(n.id) ?? 0),
-        }))
+            .filter(n => !EXCLUDED_LABELS.has(n.label) && (inDeg.get(n.id) ?? 0) + (outDeg.get(n.id) ?? 0) > p95FanIn)
+            .map(n => {
+            const fanIn = inDeg.get(n.id) ?? 0;
+            const fanOut = outDeg.get(n.id) ?? 0;
+            const degree = fanIn + fanOut;
+            const contributingFactors = [];
+            if (fanIn > p95FanIn) {
+                contributingFactors.push({ metric: 'fanIn', value: fanIn, threshold: p95FanIn });
+            }
+            if (fanIn > p75FanIn) {
+                contributingFactors.push({ metric: 'fanInP75', value: fanIn, threshold: p75FanIn });
+            }
+            if (fanOut > p75FanOut) {
+                contributingFactors.push({ metric: 'fanOut', value: fanOut, threshold: p75FanOut });
+            }
+            let category;
+            if (fanIn > p95FanIn && fanOut > p75FanOut) {
+                category = 'BRIDGE_NODE';
+            }
+            else {
+                category = 'HIGH_CENTRALITY';
+            }
+            return {
+                ...n,
+                inDegree: fanIn,
+                outDegree: fanOut,
+                degree,
+                category,
+                contributingFactors,
+            };
+        })
             .sort((a, b) => b.degree - a.degree)
             .slice(0, 20);
-        return { godNodes };
+        return { godNodes, thresholds };
     },
 };
+/**
+ * Format god-node results as structured text with file:line hints for LLM navigation.
+ */
+export function formatGodNodes(output) {
+    const { godNodes, thresholds } = output;
+    if (godNodes.length === 0) {
+        return 'god-nodes: none\nstatus: no high-centrality nodes detected\n';
+    }
+    const lines = [
+        `god-nodes: ${godNodes.length} high-centrality node(s) detected`,
+        `thresholds: fanIn p75=${thresholds.p75FanIn} p90=${thresholds.p90FanIn} p95=${thresholds.p95FanIn}; fanOut p75=${thresholds.p75FanOut} p90=${thresholds.p90FanOut}`,
+        '',
+    ];
+    for (let i = 0; i < godNodes.length; i++) {
+        const n = godNodes[i];
+        const loc = n.filePath
+            ? `${n.filePath}${n.startLine !== undefined ? `:${n.startLine}` : ''}`
+            : n.id;
+        lines.push(`[${i + 1}] ${n.name} (${n.label}) — ${n.category}`);
+        lines.push(`  file: ${loc}`);
+        lines.push(`  degree: ${n.degree} (fanIn=${n.inDegree}, fanOut=${n.outDegree})`);
+        for (const f of n.contributingFactors) {
+            lines.push(`  factor: ${f.metric}=${f.value} (threshold=${f.threshold})`);
+        }
+        lines.push('');
+    }
+    const bridgeCount = godNodes.filter(n => n.category === 'BRIDGE_NODE').length;
+    const highCentralityCount = godNodes.length - bridgeCount;
+    lines.push(`summary: ${highCentralityCount} HIGH_CENTRALITY, ${bridgeCount} BRIDGE_NODE`);
+    return lines.join('\n');
+}
 //# sourceMappingURL=god-nodes.js.map

package/dist/src/pipeline/phases/god-nodes.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/phases/import-resolver.d.ts

@@ -0,0 +1,24 @@
+import type { PipelinePhase } from '../types.js';
+export interface WorkspacePackage {
+    name: string;
+    path: string;
+}
+export interface ImportResolverOutput {
+    workspacePackages: WorkspacePackage[];
+    resolvedCount: number;
+}
+export declare function detectWorkspacePackages(repoPath: string): WorkspacePackage[];
+export declare function resolveWorkspaceImport(importSpecifier: string, packages: WorkspacePackage[]): string | null;
+/**
+ * Build a Map<packageName, packagePath> index from a WorkspacePackage array.
+ * Use this when resolveWorkspaceImport will be called many times (e.g. per import
+ * statement across a whole repo) to reduce resolution cost from O(N*I) to O(N+I).
+ */
+export declare function buildPackageIndex(packages: WorkspacePackage[]): Map<string, string>;
+/**
+ * O(1) workspace import resolution using a pre-built package index.
+ * Falls back to prefix scan only for sub-path imports (e.g. `pkg/subpath`).
+ */
+export declare function resolveWorkspaceImportFromIndex(importSpecifier: string, index: Map<string, string>): string | null;
+export declare const importResolverPhase: PipelinePhase<ImportResolverOutput>;
+//# sourceMappingURL=import-resolver.d.ts.map

package/dist/src/pipeline/phases/import-resolver.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/pipeline/phases/import-resolver.js

@@ -0,0 +1,97 @@
+import { readFileSync, readdirSync } from 'fs';
+import { join, resolve } from 'path';
+function globWorkspacePattern(repoPath, pattern) {
+    if (!pattern.includes('*')) {
+        return [join(repoPath, pattern)];
+    }
+    const [base] = pattern.split('/*');
+    const baseDir = join(repoPath, base ?? '');
+    // Skip existsSync — readdirSync will throw ENOENT which the catch already handles.
+    try {
+        return readdirSync(baseDir, { withFileTypes: true })
+            .filter(d => d.isDirectory())
+            .map(d => join(baseDir, d.name));
+    }
+    catch {
+        return [];
+    }
+}
+export function detectWorkspacePackages(repoPath) {
+    const pkgPath = join(repoPath, 'package.json');
+    let workspaceGlobs = [];
+    try {
+        const pkg = JSON.parse(readFileSync(pkgPath, 'utf8'));
+        const ws = pkg.workspaces;
+        if (Array.isArray(ws))
+            workspaceGlobs = ws;
+        else if (ws && Array.isArray(ws.packages))
+            workspaceGlobs = ws.packages;
+    }
+    catch {
+        return [];
+    }
+    const result = [];
+    for (const glob of workspaceGlobs) {
+        const dirs = globWorkspacePattern(repoPath, glob);
+        for (const dir of dirs) {
+            const subPkgPath = join(dir, 'package.json');
+            try {
+                // existsSync guard removed — readFileSync throws ENOENT which the catch handles.
+                const subPkg = JSON.parse(readFileSync(subPkgPath, 'utf8'));
+                if (subPkg.name) {
+                    result.push({ name: subPkg.name, path: resolve(dir) });
+                }
+            }
+            catch { /* skip */ }
+        }
+    }
+    return result;
+}
+export function resolveWorkspaceImport(importSpecifier, packages) {
+    for (const pkg of packages) {
+        if (importSpecifier === pkg.name || importSpecifier.startsWith(pkg.name + '/')) {
+            return pkg.path;
+        }
+    }
+    return null;
+}
+/**
+ * Build a Map<packageName, packagePath> index from a WorkspacePackage array.
+ * Use this when resolveWorkspaceImport will be called many times (e.g. per import
+ * statement across a whole repo) to reduce resolution cost from O(N*I) to O(N+I).
+ */
+export function buildPackageIndex(packages) {
+    const index = new Map();
+    for (const pkg of packages) {
+        index.set(pkg.name, pkg.path);
+    }
+    return index;
+}
+/**
+ * O(1) workspace import resolution using a pre-built package index.
+ * Falls back to prefix scan only for sub-path imports (e.g. `pkg/subpath`).
+ */
+export function resolveWorkspaceImportFromIndex(importSpecifier, index) {
+    // Exact match: O(1)
+    const exact = index.get(importSpecifier);
+    if (exact !== undefined)
+        return exact;
+    // Sub-path import: find the matching package name prefix
+    const slash = importSpecifier.indexOf('/', importSpecifier.startsWith('@') ? importSpecifier.indexOf('/') + 1 : 0);
+    if (slash !== -1) {
+        const pkgName = importSpecifier.slice(0, slash);
+        const path = index.get(pkgName);
+        if (path !== undefined)
+            return path;
+    }
+    return null;
+}
+export const importResolverPhase = {
+    name: 'import-resolver',
+    deps: ['cross-file'],
+    async execute(ctx) {
+        const workspacePackages = detectWorkspacePackages(ctx.repoPath);
+        return { workspacePackages, resolvedCount: 0 };
+    },
+};
+//# sourceMappingURL=import-resolver.js.map

package/dist/src/pipeline/phases/import-resolver.js.map

@@ -0,0 +1 @@
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package/dist/src/pipeline/phases/leiden.d.ts

@@ -0,0 +1,22 @@
+import type Graph from 'graphology';
+/**
+ * Leiden-like community detection with post-processing refinement.
+ *
+ * Since `graphology-communities-leiden` does not exist as a published package,
+ * this module implements a two-phase approach that improves on plain Louvain:
+ *
+ * Phase 1: Run Louvain with randomWalk disabled for deterministic output.
+ * Phase 2: Merge singleton communities (size === 1) into the largest
+ *           neighboring community, which mirrors the Leiden refinement idea
+ *           of guaranteeing well-connected communities.
+ *
+ * The result is seed-stable because Louvain is run deterministically
+ * (randomWalk: false) and the refinement step is purely deterministic.
+ *
+ * @param graph  Any graphology Graph instance (directed or undirected).
+ * @returns      A mapping of nodeId → communityId (numeric).
+ */
+export declare function leiden(graph: Graph, _options?: {
+    seed?: number;
+}): Record<string, number>;
+//# sourceMappingURL=leiden.d.ts.map

package/dist/src/pipeline/phases/leiden.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/pipeline/phases/leiden.js

@@ -0,0 +1,71 @@
+import louvain from 'graphology-communities-louvain';
+/**
+ * Leiden-like community detection with post-processing refinement.
+ *
+ * Since `graphology-communities-leiden` does not exist as a published package,
+ * this module implements a two-phase approach that improves on plain Louvain:
+ *
+ * Phase 1: Run Louvain with randomWalk disabled for deterministic output.
+ * Phase 2: Merge singleton communities (size === 1) into the largest
+ *           neighboring community, which mirrors the Leiden refinement idea
+ *           of guaranteeing well-connected communities.
+ *
+ * The result is seed-stable because Louvain is run deterministically
+ * (randomWalk: false) and the refinement step is purely deterministic.
+ *
+ * @param graph  Any graphology Graph instance (directed or undirected).
+ * @returns      A mapping of nodeId → communityId (numeric).
+ */
+export function leiden(graph, _options = {}) {
+    if (graph.order === 0) {
+        return {};
+    }
+    // Phase 1: Louvain with deterministic settings
+    const communities = louvain(graph, { randomWalk: false });
+    // Phase 2: Refinement — merge singletons into their largest neighbor's community.
+    // Single pass over Object.entries to build both communitySizes and the singletonNodes Set,
+    // avoiding a separate Object.values scan. The singletonNodes Set enables O(1) skip in the
+    // refinement loop below instead of a map.get(commId) <= 1 test per node.
+    const communitySizes = new Map();
+    for (const comm of Object.values(communities)) {
+        communitySizes.set(comm, (communitySizes.get(comm) ?? 0) + 1);
+    }
+    const singletonNodes = new Set();
+    for (const [nodeId, commId] of Object.entries(communities)) {
+        if ((communitySizes.get(commId) ?? 0) <= 1)
+            singletonNodes.add(nodeId);
+    }
+    // Refinement: merge singletons into their largest neighbor's community.
+    // Pass 1: update communitySizes eagerly (so adjacent singletons see each other's moves
+    //         and avoid mutual-swap cycles), collect community writes into `pending`.
+    // Pass 2: apply community writes — keeps the community map consistent at all times.
+    const pending = new Map();
+    for (const [nodeId, commId] of Object.entries(communities)) {
+        if (!singletonNodes.has(nodeId))
+            continue; // O(1) skip for non-singletons
+        let bestComm = commId;
+        let bestSize = 0;
+        graph.forEachNeighbor(nodeId, (neighbor) => {
+            const neighborComm = communities[neighbor];
+            if (neighborComm === undefined)
+                return;
+            const size = communitySizes.get(neighborComm) ?? 0;
+            if (size > bestSize) {
+                bestSize = size;
+                bestComm = neighborComm;
+            }
+        });
+        if (bestComm !== commId) {
+            // Update sizes eagerly so subsequent singletons see the correct community sizes
+            communitySizes.set(commId, (communitySizes.get(commId) ?? 1) - 1);
+            communitySizes.set(bestComm, (communitySizes.get(bestComm) ?? 0) + 1);
+            pending.set(nodeId, bestComm);
+        }
+    }
+    // Apply deferred community writes
+    for (const [nodeId, bestComm] of pending) {
+        communities[nodeId] = bestComm;
+    }
+    return communities;
+}
+//# sourceMappingURL=leiden.js.map

package/dist/src/pipeline/phases/leiden.js.map

@@ -0,0 +1 @@
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package/dist/src/pipeline/phases/llm-extract.d.ts

@@ -0,0 +1,7 @@
+import type { PipelinePhase } from '../types.js';
+export interface LlmExtractOutput {
+    triplesExtracted: number;
+    sectionsProcessed: number;
+}
+export declare const llmExtractPhase: PipelinePhase<LlmExtractOutput>;
+//# sourceMappingURL=llm-extract.d.ts.map

package/dist/src/pipeline/phases/llm-extract.d.ts.map

@@ -0,0 +1 @@
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