@monoes/monograph 1.0.0 → 1.2.0

package/dist/src/graph/clone-detector.js

@@ -0,0 +1,146 @@
+import { insertEdge } from '../storage/edge-store.js';
+import { makeId } from '../types.js';
+/** Tokenize a file path into lowercase alphanumeric tokens. */
+function tokenizePath(filePath) {
+    return filePath
+        .toLowerCase()
+        .split(/[^a-z0-9]+/)
+        .filter(t => t.length > 0);
+}
+/** Extract the base filename (without directory) from a path. */
+function baseName(filePath) {
+    return filePath.replace(/^.*[\\/]/, '');
+}
+/** Compute Jaccard similarity between two multisets (represented as token arrays). */
+function jaccardSimilarity(a, b) {
+    const countA = new Map();
+    const countB = new Map();
+    for (const t of a)
+        countA.set(t, (countA.get(t) ?? 0) + 1);
+    for (const t of b)
+        countB.set(t, (countB.get(t) ?? 0) + 1);
+    let intersection = 0;
+    for (const [token, ca] of countA) {
+        const cb = countB.get(token) ?? 0;
+        intersection += Math.min(ca, cb);
+    }
+    const union = a.length + b.length - intersection;
+    return union === 0 ? 1 : intersection / union;
+}
+/** Count tokens shared between two multisets. */
+function sharedTokenCount(a, b) {
+    const countA = new Map();
+    for (const t of a)
+        countA.set(t, (countA.get(t) ?? 0) + 1);
+    let shared = 0;
+    const seen = new Map();
+    for (const t of b) {
+        const limit = countA.get(t) ?? 0;
+        const used = seen.get(t) ?? 0;
+        if (used < limit) {
+            shared++;
+            seen.set(t, used + 1);
+        }
+    }
+    return shared;
+}
+export function detectClones(db, minSimilarity = 0.8, minTokens = 2) {
+    // Query all File nodes with file_path
+    const rows = db
+        .prepare(`SELECT id, file_path FROM nodes WHERE label = 'File' AND file_path IS NOT NULL`)
+        .all();
+    const totalFiles = rows.length;
+    const pairs = [];
+    const involvedFiles = new Set();
+    // Pre-compute tokens for each file
+    const tokenMap = new Map();
+    for (const row of rows) {
+        tokenMap.set(row.file_path, tokenizePath(row.file_path));
+    }
+    // Compare all pairs
+    for (let i = 0; i < rows.length; i++) {
+        for (let j = i + 1; j < rows.length; j++) {
+            const pathA = rows[i].file_path;
+            const pathB = rows[j].file_path;
+            const tokensA = tokenMap.get(pathA);
+            const tokensB = tokenMap.get(pathB);
+            const sim = jaccardSimilarity(tokensA, tokensB);
+            const shared = sharedTokenCount(tokensA, tokensB);
+            if (sim < minSimilarity || shared < minTokens) {
+                // Also check near-duplicate file names (same name, different dir)
+                const nameA = baseName(pathA);
+                const nameB = baseName(pathB);
+                const nameTokensA = tokenizePath(nameA);
+                const nameTokensB = tokenizePath(nameB);
+                const nameSim = jaccardSimilarity(nameTokensA, nameTokensB);
+                const nameShared = sharedTokenCount(nameTokensA, nameTokensB);
+                if (nameSim >= minSimilarity && nameShared >= Math.min(minTokens, nameTokensA.length)) {
+                    // Same-name files in different directories → structural similarity
+                    const pair = {
+                        fileA: pathA,
+                        fileB: pathB,
+                        similarity: nameSim,
+                        cloneType: 'structural',
+                        tokenCount: nameShared,
+                    };
+                    pairs.push(pair);
+                    involvedFiles.add(pathA);
+                    involvedFiles.add(pathB);
+                    // Emit edge
+                    const edgeId = makeId('structurally_similar', rows[i].id, rows[j].id);
+                    try {
+                        insertEdge(db, {
+                            id: edgeId,
+                            sourceId: rows[i].id,
+                            targetId: rows[j].id,
+                            relation: 'STRUCTURALLY_SIMILAR',
+                            confidence: 'INFERRED',
+                            confidenceScore: nameSim,
+                            weight: nameSim,
+                        });
+                    }
+                    catch { /* ignore duplicate edge errors */ }
+                }
+                continue;
+            }
+            // Determine clone type
+            let cloneType;
+            if (sim >= 0.99) {
+                cloneType = 'exact';
+            }
+            else if (baseName(pathA) === baseName(pathB)) {
+                cloneType = 'renamed';
+            }
+            else {
+                cloneType = 'structural';
+            }
+            const pair = {
+                fileA: pathA,
+                fileB: pathB,
+                similarity: sim,
+                cloneType,
+                tokenCount: shared,
+            };
+            pairs.push(pair);
+            involvedFiles.add(pathA);
+            involvedFiles.add(pathB);
+            // Emit STRUCTURALLY_SIMILAR edge into the edges table
+            const edgeId = makeId('structurally_similar', rows[i].id, rows[j].id);
+            try {
+                insertEdge(db, {
+                    id: edgeId,
+                    sourceId: rows[i].id,
+                    targetId: rows[j].id,
+                    relation: 'STRUCTURALLY_SIMILAR',
+                    confidence: 'INFERRED',
+                    confidenceScore: sim,
+                    weight: sim,
+                });
+            }
+            catch { /* ignore duplicate edge errors */ }
+        }
+    }
+    const cloneRatio = totalFiles === 0 ? 0 : involvedFiles.size / totalFiles;
+    return { pairs, totalFiles, cloneRatio };
+}
+//# sourceMappingURL=clone-detector.js.map

package/dist/src/graph/clone-detector.js.map

@@ -0,0 +1 @@
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package/dist/src/graph/clone-families.d.ts

@@ -0,0 +1,32 @@
+export type RefactoringKind = 'ExtractFunction' | 'ExtractModule' | 'MergeDirectories';
+export declare const MODULE_EXTRACTION_THRESHOLD_LINES = 50;
+export interface RefactoringSuggestion {
+    kind: RefactoringKind;
+    description: string;
+    estimatedLines: number;
+    files: string[];
+}
+export interface CloneInstance {
+    filePath: string;
+    startLine: number;
+    endLine: number;
+    tokenCount?: number;
+}
+export interface CloneGroup {
+    id: number;
+    instances: CloneInstance[];
+    duplicatedLines: number;
+}
+export interface CloneFamily {
+    files: string[];
+    groups: CloneGroup[];
+    totalDuplicatedLines: number;
+    suggestions: RefactoringSuggestion[];
+}
+export declare function groupIntoFamilies(groups: CloneGroup[]): CloneFamily[];
+export declare function cloneFamilySummary(families: CloneFamily[]): {
+    totalFamilies: number;
+    totalDuplicatedLines: number;
+    byKind: Record<RefactoringKind, number>;
+};
+//# sourceMappingURL=clone-families.d.ts.map

package/dist/src/graph/clone-families.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/graph/clone-families.js

@@ -0,0 +1,72 @@
+export const MODULE_EXTRACTION_THRESHOLD_LINES = 50;
+function fileSetKey(files) {
+    return [...files].sort().join('|');
+}
+function generateSuggestions(family) {
+    const suggestions = [];
+    const lines = family.totalDuplicatedLines;
+    if (lines < MODULE_EXTRACTION_THRESHOLD_LINES) {
+        suggestions.push({
+            kind: 'ExtractFunction',
+            description: `Extract ${lines} duplicated lines into a shared function`,
+            estimatedLines: lines,
+            files: family.files,
+        });
+    }
+    else {
+        // Check if all files are in the same directory → MergeDirectories
+        const dirs = [...new Set(family.files.map(f => {
+                const parts = f.replace(/\\/g, '/').split('/');
+                return parts.slice(0, -1).join('/');
+            }))];
+        if (dirs.length > 1 && family.files.length >= 3) {
+            suggestions.push({
+                kind: 'MergeDirectories',
+                description: `Consider merging ${dirs.length} directories with ${lines} shared lines`,
+                estimatedLines: lines,
+                files: family.files,
+            });
+        }
+        else {
+            suggestions.push({
+                kind: 'ExtractModule',
+                description: `Extract ${lines} duplicated lines into a shared module`,
+                estimatedLines: lines,
+                files: family.files,
+            });
+        }
+    }
+    return suggestions;
+}
+export function groupIntoFamilies(groups) {
+    const familyMap = new Map();
+    for (const group of groups) {
+        const files = group.instances.map(i => i.filePath);
+        const key = fileSetKey(files);
+        if (!familyMap.has(key)) {
+            familyMap.set(key, { files: new Set(files), groups: [] });
+        }
+        familyMap.get(key).groups.push(group);
+    }
+    return [...familyMap.values()].map(({ files, groups }) => {
+        const fileList = [...files].sort();
+        const totalDuplicatedLines = groups.reduce((s, g) => s + g.duplicatedLines, 0);
+        const base = { files: fileList, groups, totalDuplicatedLines };
+        return { ...base, suggestions: generateSuggestions(base) };
+    }).sort((a, b) => b.totalDuplicatedLines - a.totalDuplicatedLines);
+}
+export function cloneFamilySummary(families) {
+    const byKind = {
+        ExtractFunction: 0, ExtractModule: 0, MergeDirectories: 0,
+    };
+    for (const f of families) {
+        for (const s of f.suggestions)
+            byKind[s.kind]++;
+    }
+    return {
+        totalFamilies: families.length,
+        totalDuplicatedLines: families.reduce((s, f) => s + f.totalDuplicatedLines, 0),
+        byKind,
+    };
+}
+//# sourceMappingURL=clone-families.js.map

package/dist/src/graph/clone-families.js.map

@@ -0,0 +1 @@
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package/dist/src/graph/codeowners-extended.d.ts

@@ -0,0 +1,25 @@
+export interface CodeOwnerRuleMatch {
+    ownerCount: number;
+    owners: string[];
+    sectionName: string | null;
+    matchedRule: string;
+}
+export interface SectionMatch {
+    sectionName: string | null;
+    sectionOwners: string[];
+    matchedRule: string;
+}
+export interface CodeOwnersLike {
+    ownerAndRuleOf?: (path: string) => CodeOwnerRuleMatch | null;
+    sectionAndOwnersOf?: (path: string) => SectionMatch | null;
+    hasSections?: boolean;
+    ownersOf: (path: string) => string[] | null;
+}
+export declare const UNOWNED_LABEL = "(unowned)";
+export declare const NO_SECTION_LABEL = "(no section)";
+export declare function ownerCountOf(co: CodeOwnersLike, relativePath: string): number | null;
+export declare function sectionOf(co: CodeOwnersLike, relativePath: string): string | null | undefined;
+export declare function sectionAndOwnersOf(co: CodeOwnersLike, relativePath: string): SectionMatch | null;
+export declare function hasGitLabSections(co: CodeOwnersLike): boolean;
+export declare function ownerLabel(co: CodeOwnersLike, relativePath: string): string;
+//# sourceMappingURL=codeowners-extended.d.ts.map

package/dist/src/graph/codeowners-extended.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/graph/codeowners-extended.js

@@ -0,0 +1,43 @@
+export const UNOWNED_LABEL = '(unowned)';
+export const NO_SECTION_LABEL = '(no section)';
+export function ownerCountOf(co, relativePath) {
+    if (co.ownerAndRuleOf) {
+        const match = co.ownerAndRuleOf(relativePath);
+        if (!match)
+            return null;
+        return match.ownerCount;
+    }
+    const owners = co.ownersOf(relativePath);
+    if (owners === null)
+        return null;
+    return owners.length;
+}
+export function sectionOf(co, relativePath) {
+    if (!co.sectionAndOwnersOf)
+        return undefined;
+    const match = co.sectionAndOwnersOf(relativePath);
+    if (!match)
+        return undefined;
+    return match.sectionName;
+}
+export function sectionAndOwnersOf(co, relativePath) {
+    if (!co.sectionAndOwnersOf)
+        return null;
+    return co.sectionAndOwnersOf(relativePath) ?? null;
+}
+export function hasGitLabSections(co) {
+    return co.hasSections ?? false;
+}
+export function ownerLabel(co, relativePath) {
+    const owners = co.ownersOf(relativePath);
+    if (owners === null)
+        return UNOWNED_LABEL;
+    if (owners.length === 0) {
+        const section = sectionOf(co, relativePath);
+        if (section === null)
+            return NO_SECTION_LABEL;
+        return UNOWNED_LABEL;
+    }
+    return owners[0];
+}
+//# sourceMappingURL=codeowners-extended.js.map

package/dist/src/graph/codeowners-extended.js.map

@@ -0,0 +1 @@
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package/dist/src/graph/codeowners-gitlab.d.ts

@@ -0,0 +1,29 @@
+export declare const UNOWNED_LABEL = "UNOWNED";
+export declare const NO_SECTION_LABEL = "(no section)";
+export declare const CODEOWNERS_PROBE_PATHS: string[];
+export interface SectionHeader {
+    name: string;
+    optional: boolean;
+    minApprovals?: number;
+    defaultOwners: string[];
+}
+export declare function parseSectionHeader(line: string): SectionHeader | null;
+export interface CodeownersEntry {
+    pattern: string;
+    owners: string[];
+    section?: string;
+    negated: boolean;
+}
+export declare function parseCodeownersWithSections(content: string): CodeownersEntry[];
+export declare function matchOwners(entries: CodeownersEntry[], filePath: string): {
+    owners: string[];
+    section?: string;
+};
+export declare function ownerCountOf(entries: CodeownersEntry[], filePath: string): number;
+export declare function sectionOf(entries: CodeownersEntry[], filePath: string): string;
+export declare function sectionAndOwnersOf(entries: CodeownersEntry[], filePath: string): {
+    section: string;
+    owners: string[];
+};
+export declare function hasSections(entries: CodeownersEntry[]): boolean;
+//# sourceMappingURL=codeowners-gitlab.d.ts.map

package/dist/src/graph/codeowners-gitlab.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/graph/codeowners-gitlab.js

@@ -0,0 +1,89 @@
+export const UNOWNED_LABEL = 'UNOWNED';
+export const NO_SECTION_LABEL = '(no section)';
+export const CODEOWNERS_PROBE_PATHS = [
+    'CODEOWNERS',
+    'docs/CODEOWNERS',
+    '.github/CODEOWNERS',
+    '.gitlab/CODEOWNERS',
+];
+const SECTION_HEADER_RE = /^(\^)?\[([^\]]+)\](?:\[(\d+)\])?\s*(.*)?$/;
+export function parseSectionHeader(line) {
+    const trimmed = line.trim();
+    if (!trimmed.startsWith('[') && !trimmed.startsWith('^['))
+        return null;
+    const m = trimmed.match(SECTION_HEADER_RE);
+    if (!m)
+        return null;
+    const optional = m[1] === '^';
+    const name = m[2].trim();
+    const minApprovals = m[3] ? parseInt(m[3], 10) : undefined;
+    const defaultOwners = (m[4] ?? '').trim().split(/\s+/).filter(Boolean);
+    return { name, optional, minApprovals, defaultOwners };
+}
+export function parseCodeownersWithSections(content) {
+    const entries = [];
+    let currentSection;
+    let sectionDefaults = [];
+    for (const raw of content.split('\n')) {
+        const line = raw.trim();
+        if (!line || line.startsWith('#'))
+            continue;
+        const sectionHeader = parseSectionHeader(line);
+        if (sectionHeader) {
+            currentSection = sectionHeader.name;
+            sectionDefaults = sectionHeader.defaultOwners;
+            if (sectionDefaults.length > 0) {
+                entries.push({ pattern: '**/*', owners: sectionDefaults, section: currentSection, negated: false });
+            }
+            continue;
+        }
+        const negated = line.startsWith('!');
+        const rest = negated ? line.slice(1).trim() : line;
+        const parts = rest.split(/\s+/);
+        const pattern = parts[0];
+        if (!pattern)
+            continue;
+        const owners = negated ? [] : parts.slice(1);
+        entries.push({ pattern, owners, section: currentSection, negated });
+    }
+    return entries;
+}
+export function matchOwners(entries, filePath) {
+    // Import minimatch dynamically to avoid circular deps — use simple suffix matching as fallback
+    for (let i = entries.length - 1; i >= 0; i--) {
+        const entry = entries[i];
+        if (pathMatchesPattern(filePath, entry.pattern)) {
+            if (entry.negated)
+                return { owners: [], section: entry.section };
+            return { owners: entry.owners, section: entry.section };
+        }
+    }
+    return { owners: [], section: undefined };
+}
+function pathMatchesPattern(filePath, pattern) {
+    const norm = filePath.replace(/\\/g, '/');
+    const pat = pattern.replace(/\\/g, '/');
+    if (pat === '**/*')
+        return true;
+    if (pat.startsWith('**'))
+        return norm.endsWith(pat.slice(2));
+    if (pat.startsWith('/'))
+        return norm === pat.slice(1) || norm.startsWith(pat.slice(1) + '/');
+    if (pat.endsWith('/'))
+        return norm.startsWith(pat);
+    return norm === pat || norm.endsWith('/' + pat) || norm.startsWith(pat + '/');
+}
+export function ownerCountOf(entries, filePath) {
+    return matchOwners(entries, filePath).owners.length;
+}
+export function sectionOf(entries, filePath) {
+    return matchOwners(entries, filePath).section ?? NO_SECTION_LABEL;
+}
+export function sectionAndOwnersOf(entries, filePath) {
+    const { owners, section } = matchOwners(entries, filePath);
+    return { section: section ?? NO_SECTION_LABEL, owners };
+}
+export function hasSections(entries) {
+    return entries.some(e => e.section !== undefined);
+}
+//# sourceMappingURL=codeowners-gitlab.js.map

package/dist/src/graph/codeowners-gitlab.js.map

@@ -0,0 +1 @@
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package/dist/src/graph/codeowners.d.ts

@@ -0,0 +1,20 @@
+import type Database from 'better-sqlite3';
+export interface CodeownersEntry {
+    pattern: string;
+    owners: string[];
+}
+export interface OwnershipResult {
+    filePath: string;
+    declaredOwners: string[];
+    unowned: boolean;
+}
+export declare function parseCodeowners(repoRoot: string): CodeownersEntry[];
+export declare function resolveOwner(entries: CodeownersEntry[], filePath: string): string[];
+export declare function annotateOwnership(db: Database.Database, repoRoot: string): {
+    annotated: number;
+    unowned: number;
+};
+export declare function groupByOwner<T extends {
+    filePath?: string | null;
+}>(findings: T[], entries: CodeownersEntry[]): Map<string, T[]>;
+//# sourceMappingURL=codeowners.d.ts.map

package/dist/src/graph/codeowners.d.ts.map

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