@monoes/graph 1.0.0

package/dist/src/extract/index.js

@@ -0,0 +1,158 @@
+import { readFileSync, mkdirSync } from 'fs';
+import { extname } from 'path';
+import { FileCache } from '../cache.js';
+import { typescriptExtractor } from './languages/typescript.js';
+import { pythonExtractor } from './languages/python.js';
+import { goExtractor } from './languages/go.js';
+import { rustExtractor } from './languages/rust.js';
+// ---- registry ----
+const EXTRACTORS = [
+    typescriptExtractor,
+    pythonExtractor,
+    goExtractor,
+    rustExtractor,
+];
+/** Build a lookup from file extension → extractor */
+const EXT_MAP = new Map(EXTRACTORS.flatMap((e) => e.extensions.map((ext) => [ext, e])));
+/** Build a lookup from language name → extractor */
+const LANG_MAP = new Map(EXTRACTORS.map((e) => [e.language, e]));
+function resolveExtractor(file) {
+    if (file.language) {
+        const byLang = LANG_MAP.get(file.language.toLowerCase());
+        if (byLang)
+            return byLang;
+    }
+    const ext = extname(file.path).toLowerCase();
+    return EXT_MAP.get(ext) ?? null;
+}
+// ---- result merging ----
+function mergeResults(results) {
+    const nodeMap = new Map();
+    const edgeSet = new Set();
+    const edges = [];
+    const errors = [];
+    let filesProcessed = 0;
+    let fromCache = 0;
+    for (const r of results) {
+        filesProcessed += r.filesProcessed;
+        fromCache += r.fromCache;
+        errors.push(...r.errors);
+        for (const node of r.nodes) {
+            // Deduplicate by id — keep the first occurrence
+            if (!nodeMap.has(node.id)) {
+                nodeMap.set(node.id, node);
+            }
+        }
+        for (const edge of r.edges) {
+            // Deduplicate edges by source+target+relation key
+            const key = `${edge.source}||${edge.target}||${edge.relation}`;
+            if (!edgeSet.has(key)) {
+                edgeSet.add(key);
+                edges.push(edge);
+            }
+        }
+    }
+    return {
+        nodes: Array.from(nodeMap.values()),
+        edges,
+        filesProcessed,
+        fromCache,
+        errors,
+    };
+}
+// ---- public API ----
+/**
+ * Extract graph nodes and edges from all classified files.
+ *
+ * Reads each file, checks the on-disk cache keyed by SHA-256 content hash,
+ * dispatches to the appropriate language extractor, and merges all results
+ * into a single ExtractionResult (nodes deduplicated by id, edges by source+target+relation).
+ *
+ * @param files      - Classified files to process (from the classify layer)
+ * @param outputDir  - Directory used for cache storage (.monobrain/graph by default)
+ * @param options    - Build options (languages filter, maxFileSizeBytes, etc.)
+ */
+export async function extractAll(files, outputDir, options) {
+    const maxSize = options?.maxFileSizeBytes ?? 500 * 1024; // 500 KB
+    const langFilter = options?.languages?.map((l) => l.toLowerCase());
+    mkdirSync(outputDir, { recursive: true });
+    const cache = new FileCache(outputDir);
+    const results = [];
+    for (const file of files) {
+        // Skip files that are too large
+        if (file.sizeBytes > maxSize) {
+            results.push({
+                nodes: [],
+                edges: [],
+                filesProcessed: 1,
+                fromCache: 0,
+                errors: [`Skipped ${file.path}: file size ${file.sizeBytes} exceeds limit ${maxSize}`],
+            });
+            continue;
+        }
+        // Apply language filter
+        if (langFilter && langFilter.length > 0) {
+            const extractor = resolveExtractor(file);
+            const fileLang = (file.language ?? '').toLowerCase();
+            const extractorLang = extractor?.language ?? '';
+            if (!langFilter.includes(fileLang) && !langFilter.includes(extractorLang)) {
+                continue;
+            }
+        }
+        const extractor = resolveExtractor(file);
+        if (!extractor) {
+            // No extractor for this file type — skip silently
+            continue;
+        }
+        // Read content
+        let content;
+        try {
+            content = readFileSync(file.path, 'utf8');
+        }
+        catch (err) {
+            results.push({
+                nodes: [],
+                edges: [],
+                filesProcessed: 1,
+                fromCache: 0,
+                errors: [`Failed to read ${file.path}: ${err instanceof Error ? err.message : String(err)}`],
+            });
+            continue;
+        }
+        // Check cache using FileCache (keyed on filePath + content hash)
+        const cacheKey = cache.key(file.path, content);
+        const cached = cache.get(cacheKey);
+        if (cached) {
+            results.push({
+                ...cached,
+                filesProcessed: 1,
+                fromCache: 1,
+            });
+            continue;
+        }
+        // Extract
+        let result;
+        try {
+            result = extractor.extract(file.path, content);
+        }
+        catch (err) {
+            result = {
+                nodes: [],
+                edges: [],
+                filesProcessed: 1,
+                fromCache: 0,
+                errors: [`Extractor error for ${file.path}: ${err instanceof Error ? err.message : String(err)}`],
+            };
+        }
+        // Store in cache
+        cache.set(cacheKey, result);
+        results.push(result);
+    }
+    return mergeResults(results);
+}
+export { typescriptExtractor } from './languages/typescript.js';
+export { pythonExtractor } from './languages/python.js';
+export { goExtractor } from './languages/go.js';
+export { rustExtractor } from './languages/rust.js';
+export { isTreeSitterAvailable, tryLoadParser, walk, parseFile, parseFileFromDisk } from './tree-sitter-runner.js';
+//# sourceMappingURL=index.js.map

package/dist/src/extract/index.js.map

@@ -0,0 +1 @@
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package/dist/src/extract/languages/go.d.ts

@@ -0,0 +1,3 @@
+import type { LanguageExtractor } from '../types.js';
+export declare const goExtractor: LanguageExtractor;
+//# sourceMappingURL=go.d.ts.map

package/dist/src/extract/languages/go.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/extract/languages/go.js

@@ -0,0 +1,181 @@
+import { basename } from 'path';
+import { tryLoadParser, walk, } from '../tree-sitter-runner.js';
+// ---- helpers ----
+function nodeName(node) {
+    const nameNode = node.childForFieldName('name');
+    return nameNode?.text ?? '';
+}
+function loc(node) {
+    return `L${node.startPosition.row + 1}`;
+}
+// ---- tree-sitter extraction ----
+function extractWithTreeSitter(filePath, content) {
+    const nodes = [];
+    const edges = [];
+    const errors = [];
+    const parser = tryLoadParser('go');
+    if (!parser) {
+        return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
+    }
+    let tree;
+    try {
+        tree = parser.parse(content);
+    }
+    catch (err) {
+        errors.push(`tree-sitter parse error in ${filePath}: ${String(err)}`);
+        return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
+    }
+    walk(tree.rootNode, (n) => {
+        // ---- function declarations ----
+        if (n.type === 'function_declaration' || n.type === 'method_declaration') {
+            const name = nodeName(n);
+            if (name) {
+                // For methods, qualify with receiver type
+                let qualifiedName = name;
+                if (n.type === 'method_declaration') {
+                    const receiver = n.childForFieldName('receiver');
+                    if (receiver) {
+                        // receiver text looks like "(r *MyType)" — extract type name
+                        const receiverType = receiver.text.replace(/^\(|\)$/g, '').trim().replace(/^\w+\s+\*?/, '');
+                        if (receiverType)
+                            qualifiedName = `${receiverType}.${name}`;
+                    }
+                }
+                nodes.push({
+                    id: qualifiedName,
+                    label: qualifiedName,
+                    fileType: 'code',
+                    sourceFile: filePath,
+                    sourceLocation: loc(n),
+                });
+            }
+            return;
+        }
+        // ---- type declarations (struct, interface) ----
+        if (n.type === 'type_declaration') {
+            for (const child of n.children) {
+                if (child.type === 'type_spec') {
+                    const nameNode = child.childForFieldName('name');
+                    const typeNode = child.childForFieldName('type');
+                    const typeName = nameNode?.text ?? '';
+                    if (!typeName)
+                        continue;
+                    const typeKind = typeNode?.type === 'struct_type' ? 'struct'
+                        : typeNode?.type === 'interface_type' ? 'interface'
+                            : 'type';
+                    nodes.push({
+                        id: typeName,
+                        label: typeName,
+                        fileType: 'code',
+                        sourceFile: filePath,
+                        sourceLocation: loc(child),
+                        nodeKind: typeKind,
+                    });
+                }
+            }
+            return;
+        }
+        // ---- import declarations ----
+        if (n.type === 'import_declaration') {
+            for (const child of n.children) {
+                if (child.type === 'import_spec_list') {
+                    for (const spec of child.children) {
+                        if (spec.type === 'import_spec') {
+                            const pathNode = spec.childForFieldName('path');
+                            if (pathNode) {
+                                const importPath = pathNode.text.replace(/^"|"$/g, '');
+                                edges.push({
+                                    source: basename(filePath),
+                                    target: importPath,
+                                    relation: 'imports',
+                                    confidence: 'EXTRACTED',
+                                    sourceFile: filePath,
+                                    sourceLocation: loc(spec),
+                                });
+                            }
+                        }
+                    }
+                }
+                if (child.type === 'import_spec') {
+                    const pathNode = child.childForFieldName('path');
+                    if (pathNode) {
+                        const importPath = pathNode.text.replace(/^"|"$/g, '');
+                        edges.push({
+                            source: basename(filePath),
+                            target: importPath,
+                            relation: 'imports',
+                            confidence: 'EXTRACTED',
+                            sourceFile: filePath,
+                            sourceLocation: loc(child),
+                        });
+                    }
+                }
+            }
+        }
+    });
+    return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
+}
+// ---- regex fallback ----
+function extractWithRegex(filePath, content) {
+    const nodes = [];
+    const edges = [];
+    const lines = content.split('\n');
+    let inImportBlock = false;
+    lines.forEach((line, idx) => {
+        const location = `L${idx + 1}`;
+        const trimmed = line.trim();
+        // Detect import blocks
+        if (trimmed === 'import (') {
+            inImportBlock = true;
+            return;
+        }
+        if (inImportBlock && trimmed === ')') {
+            inImportBlock = false;
+            return;
+        }
+        if (inImportBlock) {
+            const importPathMatch = trimmed.match(/"([^"]+)"/);
+            if (importPathMatch) {
+                edges.push({ source: basename(filePath), target: importPathMatch[1], relation: 'imports', confidence: 'EXTRACTED', sourceFile: filePath, sourceLocation: location });
+            }
+            return;
+        }
+        // Single-line import: import "pkg"
+        const singleImportMatch = trimmed.match(/^import\s+"([^"]+)"/);
+        if (singleImportMatch) {
+            edges.push({ source: basename(filePath), target: singleImportMatch[1], relation: 'imports', confidence: 'EXTRACTED', sourceFile: filePath, sourceLocation: location });
+        }
+        // Function: func (r *Recv) MethodName(...) or func FuncName(...)
+        const funcMatch = trimmed.match(/^func\s+(?:\(\w+\s+\*?(\w+)\)\s+)?(\w+)/);
+        if (funcMatch) {
+            const receiver = funcMatch[1];
+            const name = funcMatch[2];
+            const qualifiedName = receiver ? `${receiver}.${name}` : name;
+            nodes.push({ id: qualifiedName, label: qualifiedName, fileType: 'code', sourceFile: filePath, sourceLocation: location });
+        }
+        // Struct: type Name struct
+        const structMatch = trimmed.match(/^type\s+(\w+)\s+struct/);
+        if (structMatch) {
+            nodes.push({ id: structMatch[1], label: structMatch[1], fileType: 'code', sourceFile: filePath, sourceLocation: location, nodeKind: 'struct' });
+        }
+        // Interface: type Name interface
+        const ifaceMatch = trimmed.match(/^type\s+(\w+)\s+interface/);
+        if (ifaceMatch) {
+            nodes.push({ id: ifaceMatch[1], label: ifaceMatch[1], fileType: 'code', sourceFile: filePath, sourceLocation: location, nodeKind: 'interface' });
+        }
+    });
+    return { nodes, edges, filesProcessed: 1, fromCache: 0, errors: [] };
+}
+// ---- extractor implementation ----
+export const goExtractor = {
+    language: 'go',
+    extensions: ['.go'],
+    extract(filePath, content) {
+        const tsResult = extractWithTreeSitter(filePath, content);
+        if (tsResult.nodes.length > 0 || tsResult.edges.length > 0 || tsResult.errors.length > 0) {
+            return tsResult;
+        }
+        return extractWithRegex(filePath, content);
+    },
+};
+//# sourceMappingURL=go.js.map

package/dist/src/extract/languages/go.js.map

@@ -0,0 +1 @@
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package/dist/src/extract/languages/python.d.ts

@@ -0,0 +1,3 @@
+import type { LanguageExtractor } from '../types.js';
+export declare const pythonExtractor: LanguageExtractor;
+//# sourceMappingURL=python.d.ts.map

package/dist/src/extract/languages/python.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"python.d.ts","sourceRoot":"","sources":["../../../../src/extract/languages/python.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AAgQrD,eAAO,MAAM,eAAe,EAAE,iBAW7B,CAAC"}

package/dist/src/extract/languages/python.js

@@ -0,0 +1,230 @@
+import { basename } from 'path';
+import { tryLoadParser, walk, } from '../tree-sitter-runner.js';
+// ---- helpers ----
+function nodeName(node) {
+    const nameNode = node.childForFieldName('name');
+    return nameNode?.text ?? '';
+}
+function loc(node) {
+    return `L${node.startPosition.row + 1}`;
+}
+// ---- tree-sitter extraction ----
+function extractWithTreeSitter(filePath, content) {
+    const nodes = [];
+    const edges = [];
+    const errors = [];
+    const parser = tryLoadParser('python');
+    if (!parser) {
+        return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
+    }
+    let tree;
+    try {
+        tree = parser.parse(content);
+    }
+    catch (err) {
+        errors.push(`tree-sitter parse error in ${filePath}: ${String(err)}`);
+        return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
+    }
+    // Track method context for call attribution
+    const functionStack = [];
+    const classStack = [];
+    walk(tree.rootNode, (n) => {
+        // ---- class definitions ----
+        if (n.type === 'class_definition') {
+            const name = nodeName(n);
+            if (name) {
+                nodes.push({
+                    id: name,
+                    label: name,
+                    fileType: 'code',
+                    sourceFile: filePath,
+                    sourceLocation: loc(n),
+                });
+                classStack.push(name);
+                // Inheritance: class A(B, C):
+                const argList = n.childForFieldName('superclasses');
+                if (argList) {
+                    for (const child of argList.children) {
+                        if (child.type === 'identifier' || child.type === 'attribute') {
+                            edges.push({
+                                source: name,
+                                target: child.text,
+                                relation: 'extends',
+                                confidence: 'EXTRACTED',
+                                sourceFile: filePath,
+                                sourceLocation: loc(argList),
+                            });
+                        }
+                    }
+                }
+            }
+            return;
+        }
+        // ---- function / async function definitions ----
+        if (n.type === 'function_definition' || n.type === 'decorated_definition') {
+            // For decorated_definition, descend to find the inner function_definition
+            const funcNode = n.type === 'decorated_definition'
+                ? (n.children.find((c) => c.type === 'function_definition') ?? n)
+                : n;
+            const name = nodeName(funcNode);
+            if (name) {
+                const qualifiedName = classStack.length > 0
+                    ? `${classStack[classStack.length - 1]}.${name}`
+                    : name;
+                nodes.push({
+                    id: qualifiedName,
+                    label: qualifiedName,
+                    fileType: 'code',
+                    sourceFile: filePath,
+                    sourceLocation: loc(funcNode),
+                });
+                functionStack.push(qualifiedName);
+            }
+            return;
+        }
+        // ---- import statements ----
+        if (n.type === 'import_statement') {
+            // import X, import X as Y
+            for (const child of n.children) {
+                if (child.type === 'dotted_name' || child.type === 'aliased_import') {
+                    const importedName = child.type === 'aliased_import'
+                        ? child.childForFieldName('name')?.text ?? child.text
+                        : child.text;
+                    if (importedName) {
+                        edges.push({
+                            source: basename(filePath),
+                            target: importedName,
+                            relation: 'imports',
+                            confidence: 'EXTRACTED',
+                            sourceFile: filePath,
+                            sourceLocation: loc(n),
+                        });
+                    }
+                }
+            }
+            return;
+        }
+        // ---- from X import Y ----
+        if (n.type === 'import_from_statement') {
+            const moduleNode = n.childForFieldName('module_name');
+            const moduleName = moduleNode?.text ?? '';
+            if (moduleName) {
+                edges.push({
+                    source: basename(filePath),
+                    target: moduleName,
+                    relation: 'imports',
+                    confidence: 'EXTRACTED',
+                    sourceFile: filePath,
+                    sourceLocation: loc(n),
+                });
+            }
+            // Also emit edges for individual imported names
+            for (const child of n.children) {
+                if (child.type === 'dotted_name' || child.type === 'identifier') {
+                    // Skip the module_name we already handled
+                    if (child === moduleNode)
+                        continue;
+                    edges.push({
+                        source: filePath,
+                        target: child.text,
+                        relation: 'imports',
+                        confidence: 'EXTRACTED',
+                        sourceFile: filePath,
+                        sourceLocation: loc(n),
+                    });
+                }
+                if (child.type === 'aliased_import') {
+                    const importedName = child.childForFieldName('name')?.text ?? child.text;
+                    if (importedName) {
+                        edges.push({
+                            source: filePath,
+                            target: importedName,
+                            relation: 'imports',
+                            confidence: 'EXTRACTED',
+                            sourceFile: filePath,
+                            sourceLocation: loc(n),
+                        });
+                    }
+                }
+            }
+            return;
+        }
+        // ---- call expressions ----
+        if (n.type === 'call') {
+            const fnNode = n.childForFieldName('function');
+            if (!fnNode)
+                return;
+            const calleeName = fnNode.text;
+            const caller = functionStack[functionStack.length - 1] ??
+                classStack[classStack.length - 1] ??
+                basename(filePath);
+            if (calleeName && caller && calleeName !== caller) {
+                edges.push({
+                    source: caller,
+                    target: calleeName,
+                    relation: 'calls',
+                    confidence: 'INFERRED',
+                    confidenceScore: 0.7,
+                    sourceFile: filePath,
+                    sourceLocation: loc(n),
+                });
+            }
+        }
+    });
+    return { nodes, edges, filesProcessed: 1, fromCache: 0, errors };
+}
+// ---- regex fallback ----
+function extractWithRegex(filePath, content) {
+    const nodes = [];
+    const edges = [];
+    const lines = content.split('\n');
+    lines.forEach((line, idx) => {
+        const location = `L${idx + 1}`;
+        // class
+        const classMatch = line.match(/^class\s+(\w+)/);
+        if (classMatch) {
+            const name = classMatch[1];
+            nodes.push({ id: name, label: name, fileType: 'code', sourceFile: filePath, sourceLocation: location });
+            // inheritance: class A(B, C):
+            const inheritMatch = line.match(/^class\s+\w+\(([^)]+)\)/);
+            if (inheritMatch) {
+                for (const base of inheritMatch[1].split(',')) {
+                    const baseName = base.trim();
+                    if (baseName && baseName !== 'object') {
+                        edges.push({ source: name, target: baseName, relation: 'extends', confidence: 'EXTRACTED', sourceFile: filePath, sourceLocation: location });
+                    }
+                }
+            }
+        }
+        // function
+        const funcMatch = line.match(/^(?:async\s+)?def\s+(\w+)/);
+        if (funcMatch) {
+            const name = funcMatch[1];
+            nodes.push({ id: name, label: name, fileType: 'code', sourceFile: filePath, sourceLocation: location });
+        }
+        // import
+        const importMatch = line.match(/^import\s+(\S+)/);
+        if (importMatch) {
+            edges.push({ source: basename(filePath), target: importMatch[1], relation: 'imports', confidence: 'EXTRACTED', sourceFile: filePath, sourceLocation: location });
+        }
+        // from X import Y
+        const fromImportMatch = line.match(/^from\s+(\S+)\s+import/);
+        if (fromImportMatch) {
+            edges.push({ source: basename(filePath), target: fromImportMatch[1], relation: 'imports', confidence: 'EXTRACTED', sourceFile: filePath, sourceLocation: location });
+        }
+    });
+    return { nodes, edges, filesProcessed: 1, fromCache: 0, errors: [] };
+}
+// ---- extractor implementation ----
+export const pythonExtractor = {
+    language: 'python',
+    extensions: ['.py', '.pyw'],
+    extract(filePath, content) {
+        const tsResult = extractWithTreeSitter(filePath, content);
+        if (tsResult.nodes.length > 0 || tsResult.edges.length > 0 || tsResult.errors.length > 0) {
+            return tsResult;
+        }
+        return extractWithRegex(filePath, content);
+    },
+};
+//# sourceMappingURL=python.js.map

package/dist/src/extract/languages/python.js.map

@@ -0,0 +1 @@
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package/dist/src/extract/languages/rust.d.ts

@@ -0,0 +1,3 @@
+import type { LanguageExtractor } from '../types.js';
+export declare const rustExtractor: LanguageExtractor;
+//# sourceMappingURL=rust.d.ts.map

package/dist/src/extract/languages/rust.d.ts.map

@@ -0,0 +1 @@
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