@momentiq/dark-factory-cli 2.1.0 → 2.2.1

package/dist/mcp/tools/onboard.js

@@ -0,0 +1,115 @@
+// packages/cli/src/mcp/tools/onboard.ts
+//
+// Cycle 15 Phase C — `df_onboard {target, mode}` MCP tool.
+//
+// Delegates EVERYTHING beyond analysis-only to `cmdOnboard()` from
+// `src/commands/onboard.ts` (Task 4.5) so the MCP path returns the SAME
+// merged plan as the CLI path. The MCP tool MUST NOT re-assemble a plan
+// from seeders alone — that would skip Phase B's LLM-emitted CLAUDE.md
+// and break Task 5 metric 1 through the MCP path.
+//
+// Per-mode `destructiveHint` annotation is set on the response (NOT on
+// the tool registration) because it varies per call:
+//   - analysis-only / dry-run → false (read-only / in-memory)
+//   - apply / pr             → true  (writes to working tree / opens PR)
+//
+// Tool-registration `openWorldHint: true` applies to ALL modes —
+// analysis reads the filesystem; pr reaches GitHub via gh.
+import { z } from "zod";
+import { analyze } from "../../onboard/analyze.js";
+import { cmdOnboard } from "../../commands/onboard.js";
+function isDestructive(mode) {
+    return mode === "apply" || mode === "pr";
+}
+function renderMarkdownSummary(input) {
+    if ("analysis" in input.sc) {
+        const a = input.sc.analysis;
+        return [
+            `**df_onboard** (mode=analysis-only)`,
+            `- canonicalName: ${a.canonicalName || "(unknown)"}`,
+            `- stacks: ${a.stacks.map((s) => s.language).join(", ") || "(none)"}`,
+            `- services: ${a.services.length}`,
+            `- decisions: ${a.decisions.length}`,
+            `- analyzerErrors: ${a.analyzerErrors.length}`,
+        ].join("\n");
+    }
+    const p = input.sc;
+    return [
+        `**df_onboard** (mode=${input.mode}, dryRun=${p.dryRun}, applied=${p.applied})`,
+        `- files in plan: ${p.plan.files.length}`,
+        p.branchName ? `- branch: ${p.branchName}` : null,
+    ]
+        .filter((line) => Boolean(line))
+        .join("\n");
+}
+export function registerOnboardTool(server, _opts = {}) {
+    server.registerTool("df_onboard", {
+        title: "Dark Factory onboard",
+        description: "Run `df onboard` on a target repo. Modes: analysis-only (Phase A — emit RepoAnalysis only), " +
+            "dry-run (Phase B+C — emit merged ScaffoldPlan without writing), apply (Phase B+C — write files " +
+            "to working tree), pr (Phase B+C — branch + commit + open a PR via gh). 'apply' and 'pr' mutate " +
+            "the working tree; their per-call response carries `annotations.destructiveHint: true`.",
+        inputSchema: {
+            target: z
+                .string()
+                .describe("Absolute path to the target repo's working tree."),
+            mode: z
+                .enum(["analysis-only", "dry-run", "apply", "pr"])
+                .describe("Operation mode. 'analysis-only' is read-only; 'dry-run' computes a plan but writes nothing; " +
+                "'apply' writes files in place; 'pr' writes to a fresh branch and opens a PR."),
+        },
+        outputSchema: {
+            analysis: z
+                .unknown()
+                .optional()
+                .describe("Present when mode='analysis-only' — the RepoAnalysis JSON."),
+            plan: z
+                .unknown()
+                .optional()
+                .describe("Present when mode != 'analysis-only' — the merged ScaffoldPlan."),
+            dryRun: z.boolean().optional(),
+            applied: z.boolean().optional(),
+            branchName: z.string().nullable().optional(),
+        },
+        annotations: {
+            // openWorldHint applies to ALL modes — analysis reads the
+            // filesystem; pr reaches GitHub via gh. destructiveHint is NOT
+            // set at registration because it varies per-mode (set per-call
+            // on the response below).
+            openWorldHint: true,
+        },
+    }, async (args) => {
+        const target = args.target;
+        const mode = args.mode;
+        const destructiveHint = isDestructive(mode);
+        if (mode === "analysis-only") {
+            const analysis = await analyze(target);
+            const result = { analysis };
+            return {
+                structuredContent: result,
+                content: [{ type: "text", text: renderMarkdownSummary({ mode, sc: result }) }],
+                // Per-call destructive flag — analysis-only is read-only.
+                annotations: { destructiveHint },
+            };
+        }
+        // dry-run / apply / pr — delegate to cmdOnboard. `json: true` is
+        // structurally irrelevant in the orchestrator's contract today
+        // (the orchestrator always returns the structured plan; the CLI
+        // shim handles rendered diff output), but pass it explicitly so
+        // the intent ("MCP wants the structured plan, not a rendered
+        // ANSI diff") is documented at the call site.
+        const out = (await cmdOnboard({ target, mode }));
+        const result = {
+            plan: out.plan,
+            dryRun: mode === "dry-run",
+            applied: out.applied,
+            branchName: out.branchName,
+        };
+        return {
+            structuredContent: result,
+            content: [{ type: "text", text: renderMarkdownSummary({ mode, sc: result }) }],
+            annotations: { destructiveHint },
+        };
+    });
+}
+//# sourceMappingURL=onboard.js.map

package/dist/mcp/tools/onboard.js.map

@@ -0,0 +1 @@
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package/dist/onboard/analyzers/ci.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ci.d.ts","sourceRoot":"","sources":["../../../src/onboard/analyzers/ci.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAc/C,eAAO,MAAM,UAAU,EAAE,QA8CxB,CAAC"}
+{"version":3,"file":"ci.d.ts","sourceRoot":"","sources":["../../../src/onboard/analyzers/ci.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAc/C,eAAO,MAAM,UAAU,EAAE,QAoDxB,CAAC"}

package/dist/onboard/analyzers/ci.js

@@ -49,6 +49,12 @@ export const ciAnalyzer = {
                 triggers,
                 jobs,
                 matrixDimensions,
+                // First TRUE single-line `run:` command in this workflow's raw YAML.
+                // Multi-line `run: |` blocks return null (the validator's metric-4
+                // regex matches the single-line form, so embedding a multi-line
+                // block's inner line in a runbook would not be a candidate).
+                // Consumed by the runbook seeder's donor fallback (issue #138).
+                firstRunCommand: extractFirstSingleLineRunFromText(raw),
             });
             if (!deployStory) {
                 deployStory = findDeployCommand(p, `.github/workflows/${name}`);
@@ -109,4 +115,30 @@ function findDeployCommand(parsed, workflowPath) {
     }
     return null;
 }
+// Extracts the first TRUE single-line `run:` command from raw YAML text
+// (`run: <cmd>`), not the first line of a multi-line `run: |` block. The
+// raw-text path is intentional: this value is consumed by the runbook
+// seeder, and the metric 4 validator's candidate-line extractor uses the
+// same `^\s*-?\s*run:\s*(.+)$` shape — extracting via the YAML AST would
+// silently lose the single-vs-multiline distinction (after parsing, both
+// forms yield the same `run` string).
+//
+// Returns null when every `run:` is a block scalar (`run: |`, `run: >`,
+// `run: |-`, etc.) or the workflow has no `run:` steps at all.
+function extractFirstSingleLineRunFromText(rawYaml) {
+    for (const line of rawYaml.split(/\r?\n/)) {
+        const m = /^\s*-\s*run:\s+(\S.*)$/.exec(line) ?? /^\s*run:\s+(\S.*)$/.exec(line);
+        if (!m)
+            continue;
+        const cmd = m[1]?.trim();
+        if (!cmd)
+            continue;
+        if (cmd === "|" || cmd === "|-" || cmd === ">" || cmd === ">-")
+            continue;
+        if (cmd.length <= 10)
+            continue;
+        return cmd;
+    }
+    return null;
+}
 //# sourceMappingURL=ci.js.map

package/dist/onboard/analyzers/ci.js.map

@@ -1 +1 @@
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package/dist/onboard/analyzers/lockfile.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lockfile.d.ts","sourceRoot":"","sources":["../../../src/onboard/analyzers/lockfile.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AA2P/C,eAAO,MAAM,gBAAgB,EAAE,QAyB9B,CAAC"}
+{"version":3,"file":"lockfile.d.ts","sourceRoot":"","sources":["../../../src/onboard/analyzers/lockfile.ts"],"names":[],"mappings":"AAgCA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AA8T/C,eAAO,MAAM,gBAAgB,EAAE,QAkE9B,CAAC"}

package/dist/onboard/analyzers/lockfile.js

@@ -1,20 +1,5 @@
-// Lockfile analyzer — cycle 15 Phase A.
-//
-// Reads ONE lockfile per repo (precedence: package-lock.json > yarn.lock >
-// poetry.lock > go.sum) and populates two RepoAnalysis fields:
-//
-//   1. `dependencies[]` — top 20 DIRECT deps with PINNED versions
-//      (schema cap = 20). The deterministic name+version table Phase B's
-//      LLM cites verbatim in ADR seeds (cycle 15 D2 lines 132–134).
-//
-//   2. `decisions[]` — heuristic markers (test-framework / deploy-target /
-//      stack / auth-model) derived from dep names. Schema cap = 10 globally.
-//
-// `package.json` alone (no lockfile) returns null: only a real lockfile has
-// PINNED versions — package.json deps are ranges. Stack DETECTION is the
-// manifest analyzer's job (Task 3); pinned versions are this analyzer's.
-import { readFile } from "node:fs/promises";
-import { join } from "node:path";
+import { readFile, readdir } from "node:fs/promises";
+import { join, relative, sep } from "node:path";
 import TOML from "@iarna/toml";
 // @yarnpkg/lockfile is CJS; ESM only sees the default export.
 // Pull `parse` off the default to keep ESM consumers + Node ESM-loader happy.
@@ -22,6 +7,31 @@ import yarnpkgLockfile from "@yarnpkg/lockfile";
 const { parse: parseYarnLock } = yarnpkgLockfile;
 const MAX_DEPS = 20;
 const MAX_DECISIONS = 10;
+// Walk depth: 0 = root, 1 = direct child (e.g. `web/`), 2 = grandchild
+// (e.g. `tools/df-flow-assessor/`), 3 = great-grandchild. Covers every
+// sage3c lockfile (deepest is depth-2). Mirrors tree.ts's depth budget.
+const MAX_LOCKFILE_DEPTH = 3;
+// Skip the same set tree.ts skips — kept local on purpose so this analyzer's
+// diff doesn't collide with any sibling refactor of tree.ts. Hidden entries
+// (starting with `.`) are also skipped to keep .git/.github/.venv etc. out
+// of the walk.
+const SKIP_DIR_NAMES = new Set([
+    "node_modules",
+    "dist",
+    "build",
+    "target",
+    ".next",
+    ".venv",
+    "__pycache__",
+    ".gradle",
+]);
+function shouldSkipDir(name) {
+    if (name.startsWith("."))
+        return true;
+    if (SKIP_DIR_NAMES.has(name))
+        return true;
+    return false;
+}
 // Decision-surface heuristics. Each entry matches a single dep name (exact
 // match, post-lowercase) and emits ONE decision with evidence: [lockfilePath].
 // Title strings follow the spec's example phrasing — Phase B's LLM polishes
@@ -71,17 +81,62 @@ async function readIfExists(path) {
         throw e;
     }
 }
-async function chooseLockfile(rootDir) {
-    for (const name of LOCKFILE_PRECEDENCE) {
-        const contents = await readIfExists(join(rootDir, name));
-        if (contents !== null)
-            return { name, contents };
+const LOCKFILE_SET = new Set(LOCKFILE_PRECEDENCE);
+// Walk the repo (bounded by MAX_LOCKFILE_DEPTH + SKIP_DIR_NAMES) for every
+// known lockfile filename. Results are sorted by relPath for deterministic
+// output across readdir order.
+async function discoverLockfiles(rootDir) {
+    const found = [];
+    async function walk(absDir, depth) {
+        if (depth > MAX_LOCKFILE_DEPTH)
+            return;
+        let entries;
+        try {
+            entries = await readdir(absDir, { withFileTypes: true });
+        }
+        catch {
+            // Permission denied / transient — treat as empty so one unreadable
+            // subtree can't bomb the whole analyzer.
+            return;
+        }
+        // Read files in this dir before descending so each level's lockfile
+        // joins `found` before its descendants'.
+        for (const entry of entries) {
+            if (!entry.isFile())
+                continue;
+            if (!LOCKFILE_SET.has(entry.name))
+                continue;
+            const absPath = join(absDir, entry.name);
+            const contents = await readIfExists(absPath);
+            if (contents === null)
+                continue;
+            const rel = relative(rootDir, absPath).split(sep).join("/");
+            found.push({
+                name: entry.name,
+                relPath: rel,
+                absDir,
+                contents,
+            });
+        }
+        for (const entry of entries) {
+            if (!entry.isDirectory())
+                continue;
+            if (shouldSkipDir(entry.name))
+                continue;
+            await walk(join(absDir, entry.name), depth + 1);
+        }
     }
-    return null;
+    await walk(rootDir, 0);
+    found.sort((a, b) => (a.relPath < b.relPath ? -1 : a.relPath > b.relPath ? 1 : 0));
+    return found;
 }
 // package-lock.json — handles both lockfileVersion 1 (root-level dependencies
 // with the version values being the pins) and 2/3 (packages[""].dependencies
 // for direct-dep names; packages["node_modules/<name>"].version for the pin).
+//
+// Returns EVERY direct dep (no internal cap). The aggregate cap is enforced
+// in `detect()` so the decision-marker scan can find matches anywhere in the
+// lockfile, not just within the first 20 alphabetical entries.
 function parsePackageLock(contents, lockfilePath) {
     let parsed;
     try {
@@ -116,8 +171,6 @@ function parsePackageLock(contents, lockfilePath) {
                 : requestedRange;
             out.push({ name, version: pinnedVersion, manifestPath: lockfilePath });
             seen.add(name);
-            if (out.length >= MAX_DEPS)
-                return out;
         }
     }
     // v1 fallback (and a belt+braces top-up if v2/v3 produced nothing): root
@@ -136,17 +189,16 @@ function parsePackageLock(contents, lockfilePath) {
                 continue;
             out.push({ name, version, manifestPath: lockfilePath });
             seen.add(name);
-            if (out.length >= MAX_DEPS)
-                return out;
         }
     }
     return out;
 }
-// yarn.lock — cross-reference top-level package.json keys with parsed lockfile
-// entries; lockfile keys take the form "<name>@<range>", so we look up each
-// direct dep by its requested range.
-async function parseYarn(contents, lockfilePath, rootDir) {
-    const pkgJsonRaw = await readIfExists(join(rootDir, "package.json"));
+// yarn.lock — cross-reference the SIBLING package.json's deps (NOT the repo
+// root's — yarn workspaces put a lockfile next to a per-package manifest)
+// with parsed lockfile entries; lockfile keys take the form "<name>@<range>",
+// so we look up each direct dep by its requested range.
+async function parseYarn(contents, lockfilePath, lockfileDir) {
+    const pkgJsonRaw = await readIfExists(join(lockfileDir, "package.json"));
     if (pkgJsonRaw === null)
         return [];
     let pkg;
@@ -167,19 +219,19 @@ async function parseYarn(contents, lockfilePath, rootDir) {
     if (parsed.type === "conflict")
         return [];
     const entries = parsed.object;
+    // Returns every direct dep (no internal cap — aggregate cap is in detect()).
     const out = [];
     for (const [name, range] of Object.entries(directDeps)) {
         const key = `${name}@${range}`;
         const entry = entries[key];
         const version = entry && typeof entry.version === "string" ? entry.version : range;
         out.push({ name, version, manifestPath: lockfilePath });
-        if (out.length >= MAX_DEPS)
-            return out;
     }
     return out;
 }
 // poetry.lock — iterate [[package]] blocks. Older formats use category="main";
-// newer formats omit category — accept either.
+// newer formats omit category — accept either. Returns every package (no
+// internal cap — aggregate cap is in detect()).
 function parsePoetry(contents, lockfilePath) {
     let parsed;
     try {
@@ -206,14 +258,13 @@ function parsePoetry(contents, lockfilePath) {
         if (typeof name !== "string" || typeof version !== "string")
             continue;
         out.push({ name, version, manifestPath: lockfilePath });
-        if (out.length >= MAX_DEPS)
-            return out;
     }
     return out;
 }
 // go.sum — `<module> <version>/go.mod <hash>` lines. The /go.mod-suffix is
 // the canonical pin (the bare `<module> <version>` lines hash the module zip;
-// many lines per dep exist — first-match-per-module wins).
+// many lines per dep exist — first-match-per-module wins). Returns every
+// module (no internal cap — aggregate cap is in detect()).
 function parseGoSum(contents, lockfilePath) {
     const out = [];
     const seen = new Set();
@@ -233,52 +284,81 @@ function parseGoSum(contents, lockfilePath) {
             continue;
         seen.add(name);
         out.push({ name, version, manifestPath: lockfilePath });
-        if (out.length >= MAX_DEPS)
-            return out;
     }
     return out;
 }
-function deriveDecisions(dependencies, lockfilePath) {
-    const out = [];
-    for (const dep of dependencies) {
-        const lower = dep.name.toLowerCase();
-        for (const marker of DECISION_MARKERS) {
-            if (lower === marker.match) {
-                out.push({
-                    title: marker.title,
-                    surface: marker.surface,
-                    evidence: [lockfilePath],
-                });
-                if (out.length >= MAX_DECISIONS)
-                    return out;
-                break;
-            }
-        }
+async function parseOne(lf) {
+    switch (lf.name) {
+        case "package-lock.json":
+            return parsePackageLock(lf.contents, lf.relPath);
+        case "yarn.lock":
+            return parseYarn(lf.contents, lf.relPath, lf.absDir);
+        case "poetry.lock":
+            return parsePoetry(lf.contents, lf.relPath);
+        case "go.sum":
+            return parseGoSum(lf.contents, lf.relPath);
     }
-    return out;
 }
 export const lockfileAnalyzer = {
     name: "lockfile",
     async detect(rootDir) {
-        const chosen = await chooseLockfile(rootDir);
-        if (chosen === null)
+        const discovered = await discoverLockfiles(rootDir);
+        if (discovered.length === 0)
             return null;
-        let dependencies;
-        switch (chosen.name) {
-            case "package-lock.json":
-                dependencies = parsePackageLock(chosen.contents, chosen.name);
-                break;
-            case "yarn.lock":
-                dependencies = await parseYarn(chosen.contents, chosen.name, rootDir);
-                break;
-            case "poetry.lock":
-                dependencies = parsePoetry(chosen.contents, chosen.name);
-                break;
-            case "go.sum":
-                dependencies = parseGoSum(chosen.contents, chosen.name);
-                break;
+        // Aggregate dependencies + decisions across every lockfile, capped at the
+        // schema maxima. Dependencies dedupe on `name` (the FIRST lockfile in
+        // sort order wins — root before subdirs). Decisions dedupe on the
+        // `(title, surface)` tuple with evidence accumulated as the sorted union
+        // of source lockfiles.
+        const dependencies = [];
+        const seenDeps = new Set();
+        const decisionMap = new Map();
+        for (const lf of discovered) {
+            const deps = await parseOne(lf);
+            // Take this lockfile's contribution to the bounded dependency table.
+            // The cap is checked BEFORE the push so `dependencies.length` is
+            // strictly ≤ MAX_DEPS (the schema's hard contract — exceeding it
+            // throws inside `RepoAnalysisSchema.parse()`).
+            for (const dep of deps) {
+                if (dependencies.length >= MAX_DEPS)
+                    break;
+                if (seenDeps.has(dep.name))
+                    continue;
+                seenDeps.add(dep.name);
+                dependencies.push(dep);
+            }
+            // Decision-marker scan walks EVERY parsed dep for this lockfile,
+            // independent of whether the dep made it into the bounded table.
+            // Without this independence, a long alphabetical lockfile (e.g.
+            // sage3c's backend/poetry.lock) would fill the 20-slot dependency
+            // budget before reaching `fastapi`/`pytest`, suppressing the
+            // marker scan even though the names are right there in the file.
+            for (const dep of deps) {
+                const lower = dep.name.toLowerCase();
+                for (const marker of DECISION_MARKERS) {
+                    if (lower !== marker.match)
+                        continue;
+                    const key = `${marker.surface}::${marker.title}`;
+                    const existing = decisionMap.get(key);
+                    if (existing) {
+                        existing.evidence.add(lf.relPath);
+                    }
+                    else if (decisionMap.size < MAX_DECISIONS) {
+                        decisionMap.set(key, {
+                            title: marker.title,
+                            surface: marker.surface,
+                            evidence: new Set([lf.relPath]),
+                        });
+                    }
+                    break;
+                }
+            }
         }
-        const decisions = deriveDecisions(dependencies, chosen.name);
+        const decisions = Array.from(decisionMap.values()).map((d) => ({
+            title: d.title,
+            surface: d.surface,
+            evidence: Array.from(d.evidence).sort(),
+        }));
         return { dependencies, decisions };
     },
 };

package/dist/onboard/analyzers/lockfile.js.map

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package/dist/onboard/apply-plan.d.ts

@@ -0,0 +1,29 @@
+import { type MergeResult } from "./writers/merge.js";
+import { type SkipResult } from "./writers/skip.js";
+import type { ScaffoldPlan } from "./scaffold-schema.js";
+export type ApplyMode = "dry-run" | "apply";
+export interface EmitResult {
+    path: string;
+    action: "emit";
+    wrote: boolean;
+}
+export type ApplyFileResult = EmitResult | MergeResult | SkipResult;
+export interface ApplyResult {
+    mode: ApplyMode;
+    results: ApplyFileResult[];
+    rendered?: string;
+}
+export interface ApplyOptions {
+    mode: ApplyMode;
+    force?: boolean;
+    color?: boolean;
+    stderr?: (s: string) => void;
+}
+export declare class ScaffoldApplyError extends Error {
+    written: string[];
+    notWritten: string[];
+    cause: unknown;
+    constructor(message: string, written: string[], notWritten: string[], cause: unknown);
+}
+export declare function applyPlan(rootDir: string, plan: ScaffoldPlan, opts: ApplyOptions): Promise<ApplyResult>;
+//# sourceMappingURL=apply-plan.d.ts.map

package/dist/onboard/apply-plan.d.ts.map

@@ -0,0 +1 @@
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