@molgenis/vip-report-template 8.3.0 → 8.3.2

package/.travis.yml

@@ -1,10 +1,9 @@
+arch: amd64
 os: linux
-dist: jammy
+dist: noble
 language: node_js
-env:
-  - COREPACK_INTEGRITY_KEYS=0 # workaround for https://github.com/nodejs/corepack/issues/627
 node_js:
-  - 22
+  - 24
 branches:
   only:
     - main
@@ -15,7 +14,7 @@ cache:
     - "~/.pnpm-store"
 before_install:
   - corepack enable
-  - corepack prepare pnpm@latest-9 --activate
+  - corepack prepare pnpm@latest-10 --activate
   - pnpm config set store-dir ~/.pnpm-store
 install:
   - pnpm install
@@ -25,7 +24,6 @@ script:
   - pnpm run build
 before_deploy:
   - cp dist/index.html dist/vip-report-template.html
-  - gem update --system # workaround for https://travis-ci.community/t/builds-suddenly-failing/14580/14
 deploy:
   - provider: script
     script: bash scripts/deploy_npm_registry.sh
@@ -37,5 +35,4 @@ deploy:
     file: dist/vip-report-template.html
     on:
       tags: true
-    edge: true
 

package/eslint.config.mjs

@@ -1,16 +1,12 @@
-import pluginJs from "@eslint/js";
 // workaround: import .js because of https://github.com/solidjs-community/eslint-plugin-solid/issues/118
 import solid from "eslint-plugin-solid/configs/typescript";
 import tseslint from "typescript-eslint";
 
 export default [
   {
-    ignores: [
-      "**/*.precompiled.ts"
-    ]
+    ignores: ["**/*.precompiled.ts"],
   },
-  { files: ["**/*.{js,mjs,cjs,ts,tsx}"] },
-  pluginJs.configs.recommended,
+  { files: ["**/*.{ts,tsx}"] },
   solid,
   ...tseslint.configs.recommended,
-];
+];

package/package.json

@@ -1,38 +1,39 @@
 {
   "name": "@molgenis/vip-report-template",
-  "version": "8.3.0",
+  "version": "8.3.2",
   "description": "Report Template for Variant Call Format (VCF) Report Generator",
   "license": "LGPL-3.0",
   "devDependencies": {
-    "@molgenis/vite-plugin-inline": "^2.0.0",
+    "@molgenis/vite-plugin-inline": "^2.0.1",
     "@types/async-lock": "^1.4.2",
-    "@types/node": "^22.19.3",
-    "@vitest/coverage-v8": "^4.0.15",
+    "@types/node": "^24.12.0",
+    "@vitest/coverage-v8": "^4.1.2",
     "async-lock": "^1.4.1",
     "bulma": "^1.0.4",
-    "eslint": "^9.39.2",
+    "esbuild": "^0.27.4",
+    "eslint": "^10.1.0",
     "eslint-config-prettier": "^10.1.8",
     "eslint-plugin-solid": "^0.14.5",
     "husky": "^9.1.7",
-    "jsdom": "^27.3.0",
-    "prettier": "^3.7.4",
-    "sass": "^1.97.0",
-    "typescript": "^5.9.3",
-    "typescript-eslint": "^8.49.0",
-    "vite": "^6.4.1",
-    "vite-plugin-solid": "^2.11.10",
-    "vitest": "^4.0.15"
+    "jsdom": "^29.0.1",
+    "prettier": "^3.8.1",
+    "sass": "^1.98.0",
+    "typescript": "^6.0.2",
+    "typescript-eslint": "^8.58.0",
+    "vite": "^8.0.3",
+    "vite-plugin-solid": "^2.11.11",
+    "vitest": "^4.1.2"
   },
   "dependencies": {
-    "@fortawesome/fontawesome-svg-core": "^7.1.0",
-    "@fortawesome/free-solid-svg-icons": "^7.1.0",
-    "@molgenis/vip-report-api": "7.0.5",
-    "@molgenis/vip-report-vcf": "^4.0.5",
-    "@solidjs/router": "^0.15.4",
-    "ajv": "^8.17.1",
+    "@fortawesome/fontawesome-svg-core": "^7.2.0",
+    "@fortawesome/free-solid-svg-icons": "^7.2.0",
+    "@molgenis/vip-report-api": "7.0.6",
+    "@molgenis/vip-report-vcf": "^4.0.7",
+    "@solidjs/router": "^0.16.1",
+    "ajv": "^8.18.0",
     "base64-js": "^1.5.1",
-    "igv": "^3.6.0",
-    "solid-js": "^1.9.10",
+    "igv": "^3.8.0",
+    "solid-js": "^1.9.12",
     "sql.js": "^1.13.0"
   },
   "lint-staged": {
@@ -53,8 +54,8 @@
     "url": "git+https://github.com/molgenis/vip-report-template.git"
   },
   "engines": {
-    "node": "22",
-    "pnpm": "9"
+    "node": "24",
+    "pnpm": "10"
   },
   "scripts": {
     "build": "vite build",

package/pnpm-workspace.yaml

@@ -0,0 +1,10 @@
+allowBuilds:
+  "@parcel/watcher": true
+  esbuild: true
+blockExoticSubdeps: true
+minimumReleaseAge: 720
+minimumReleaseAgeExclude:
+  - "@molgenis/vip-report-api"
+  - "@molgenis/vip-report-vcf"
+  - "@molgenis/vite-plugin-inline"
+trustPolicy: no-downgrade

package/src/components/field/composed/FieldGenotypeStr.tsx

@@ -18,7 +18,7 @@ export const FieldGenotypeStr: Component<{
       <span class="ml-1">{`(n=${props.value.genotype.a
         .map((allele) => (allele !== null ? props.value.repeatCount![allele - 1] : "?"))
         .join("/")})`}</span>
-      <Show when={props.value.repeatUnitMatch === false}>
+      <Show when={props.value.repeatUnitMatch === 0}>
         <abbr
           title={"the called repeat unit does not match the repeat unit in the loci bed file"}
           class="ml-1 is-clickable"

package/src/components/field/composed/FieldSpanningReads.tsx

@@ -4,11 +4,15 @@ import { CellValueSpanningReads } from "../../../types/configCellComposed";
 export const FieldSpanningReads: Component<{
   value: CellValueSpanningReads;
 }> = (props) => {
-  return (
-    <span>
-      {props.value.genotype.a
+  const value = () => {
+    if (props.value.genotype.t === "hom_a" || props.value.genotype.t === "hom_r") {
+      return props.value.spanningReads[0];
+    } else {
+      return props.value.genotype.a
         .map((allele) => (allele !== null ? props.value.spanningReads[allele - 1] : "?"))
-        .join("/")}
-    </span>
-  );
+        .join("/");
+    }
+  };
+
+  return <span>{value()}</span>;
 };