@molgenis/vip-report-template 7.0.6 → 7.1.1

package/.gitattributes

@@ -1 +1,4 @@
-*.* text eol=lf
+*.* text eol=lf
+*.cram.blob binary
+*.cram.crai.blob binary
+*.gz.blob binary

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@molgenis/vip-report-template",
-  "version": "7.0.6",
+  "version": "7.1.1",
   "description": "Report Template for Variant Call Format (VCF) Report Generator",
   "license": "LGPL-3.0",
   "devDependencies": {
@@ -26,8 +26,8 @@
   "dependencies": {
     "@fortawesome/fontawesome-svg-core": "^6.7.1",
     "@fortawesome/free-solid-svg-icons": "^6.7.1",
-    "@molgenis/vip-report-api": "^6.2.1",
-    "@molgenis/vip-report-vcf": "^3.0.8",
+    "@molgenis/vip-report-api": "^6.2.2",
+    "@molgenis/vip-report-vcf": "^3.1.0",
     "@solidjs/router": "^0.15.1",
     "ajv": "^8.17.1",
     "base64-js": "^1.5.1",

package/src/mocks/GRCh38/static.ts

@@ -7,7 +7,7 @@ import strCraiUrl from "./str.cram.crai.blob";
 import fastaUrl_chr1_9982230_9982730 from "./fasta/chr1-9982230-9982730.fasta.gz.blob";
 import fastaUrl_chr1_16049667_16050167 from "./fasta/chr1-16049667-16050167.fasta.gz.blob";
 import fastaUrl_chr1_17022474_17022974 from "./fasta/chr1-17022474-17022974.fasta.gz.blob";
-import fastaUrl_chr1_149380406_149403321 from "./fasta/chr1_149380406-149403321.fasta.gz.blob";
+import fastaUrl_chr1_149380406_149403321 from "./fasta/chr1-149380406-149403321.fasta.gz.blob";
 import fastaUrl_chr1_152548062_152548562 from "./fasta/chr1-152548062-152548562.fasta.gz.blob";
 import fastaUrl_chr2_47408278_47408778 from "./fasta/chr2-47408278-47408778.fasta.gz.blob";
 import fastaUrl_chr4_105398887_105399387 from "./fasta/chr4-105398887-105399387.fasta.gz.blob";

package/src/utils/query/queryFilterComposed.ts

@@ -197,7 +197,7 @@ function createQueryFilterInheritanceMatch(
     });
     queryParts.push(createQueryComposed(queryPartsUndefined, "or"));
   }
-  return createQueryComposed(queryParts, "and");
+  return createQueryComposed(queryParts, "or");
 }
 
 function createQueryFilterDeNovo(filter: ConfigFilterDeNovo, filterValue: FilterValueDeNovo): Query {

package/tests/utils/query/queryFilterComposed.test.ts

@@ -234,6 +234,25 @@ describe("query composed filters", () => {
           operator: "or",
         });
       });
+
+      test("match and potential", () => {
+        expect(createQueryFilterComposed(config, ["true","potential"])).toStrictEqual(
+          {
+            args: [{
+              selector: ["s", 1, "VIM"],
+              operator: "==",
+              args: 1,
+            },
+            {
+              args: [
+                { selector: ["s", 1, "VIM"], operator: "==", args: null },
+                { selector: ["s", 1, "VIM"], operator: "==", args: undefined },
+              ],
+              operator: "or",
+            }],
+            operator: "or",
+          });
+      });
     });
 
     describe("deNovo", () => {