@molgenis/vip-report-template 7.0.4 → 7.0.6

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@molgenis/vip-report-template",
-  "version": "7.0.4",
+  "version": "7.0.6",
   "description": "Report Template for Variant Call Format (VCF) Report Generator",
   "license": "LGPL-3.0",
   "devDependencies": {

package/src/components/field/composed/FieldVipC.tsx

@@ -17,8 +17,8 @@ export const FieldVipC: Component<{
 
   return (
     <a onClick={onClick}>
-      <Show when={props.value.vipP} fallback={<span>{props.value.vipC!.value}</span>} keyed>
-        {(vipPItem) => <Abbr title={vipPItem.join(", ")} value={props.value.vipC!.value!} />}
+      <Show when={props.value.vipP} fallback={<span>{props.value.vipC!.label}</span>} keyed>
+        {(vipPItem) => <Abbr title={vipPItem.join(", ")} value={props.value.vipC!.label!} />}
       </Show>
     </a>
   );

package/src/components/field/composed/FieldVipCS.tsx

@@ -7,8 +7,8 @@ export const FieldVipCS: Component<{
 }> = (props) => {
   return (
     <Show when={props.value.vipCS !== null}>
-      <Show when={props.value.vipPS} fallback={<span>{props.value.vipCS!.value}</span>} keyed>
-        {(vipPSItem) => <Abbr title={vipPSItem.join(", ")} value={props.value.vipCS!.value!} />}
+      <Show when={props.value.vipPS} fallback={<span>{props.value.vipCS!.label}</span>} keyed>
+        {(vipPSItem) => <Abbr title={vipPSItem.join(", ")} value={props.value.vipCS!.label!} />}
       </Show>
     </Show>
   );

package/src/components/field/typed/FieldFlag.tsx

@@ -6,7 +6,7 @@ export const FieldFlag: Component<{
 }> = (props) => {
   return (
     <Show when={props.value !== null && props.value !== undefined}>
-      <span>{props.value as boolean}</span>
+      <span>{(props.value as boolean).toString()}</span>
     </Show>
   );
 };

package/src/components/field/typed/FieldTyped.tsx

@@ -10,7 +10,7 @@ export const FieldTyped: Component<{
 }> = (props) => {
   return (
     <>
-      {props.metadata.number.count === 1 ? (
+      {props.metadata.number.count === 0 || props.metadata.number.count === 1 ? (
         <FieldTypedItem value={props.value as FieldValueSingle | undefined} metadata={props.metadata} />
       ) : (
         <FieldTypedMultiple info={props.value as FieldValueSingle[]} infoMetadata={props.metadata} />

package/src/utils/vcf.ts

@@ -84,7 +84,9 @@ function mapFieldValueDefined(value: Value | Genotype, fieldMetadata: FieldMetad
 
 function mapFieldValue(value: Value | Genotype | undefined, fieldMetadata: FieldMetadataWrapper): FieldValue {
   let definedValue: Value | Genotype;
-  if (fieldMetadata.number.count === 1) {
+  if (fieldMetadata.number.count === 0) {
+    definedValue = value !== undefined ? value : false;
+  } else if (fieldMetadata.number.count === 1) {
     definedValue = value !== undefined ? value : null;
   } else {
     definedValue = value !== undefined && value !== null ? value : [];

package/tests/utils/vcf.test.ts

@@ -38,6 +38,18 @@ describe("vcf", () => {
   } as Item<VcfRecord>;
 
   describe("getInfoValue", () => {
+    test("field count=0 value=true", () => {
+      const record = { ...recordBase, data: { ...recordBase.data, n: { f: true } } };
+      const fieldMetadata = { id: "f", type: "FLAG", number: { count: 0 } } as FieldMetadataWrapper;
+      expect(getInfoValue(record, 0, fieldMetadata)).toStrictEqual(true);
+    });
+
+    test("field count=0 value=undefined", () => {
+      const record = { ...recordBase, data: { ...recordBase.data, n: {} } };
+      const fieldMetadata = { id: "f", type: "FLAG", number: { count: 0 } } as FieldMetadataWrapper;
+      expect(getInfoValue(record, 0, fieldMetadata)).toStrictEqual(false);
+    });
+
     test("field count=1", () => {
       const record = { ...recordBase, data: { ...recordBase.data, n: { f: 1 } } };
       const fieldMetadata = { id: "f", number: { count: 1 } } as FieldMetadataWrapper;