@molgenis/vip-report-template 5.5.4 → 5.5.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@molgenis/vip-report-template",
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-
"version": "5.5.
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"version": "5.5.5",
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"description": "Report Template for Variant Call Format (VCF) Report Generator",
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"scripts": {
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"build": "vite build",
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@@ -36,8 +36,8 @@
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"dependencies": {
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"@fortawesome/fontawesome-svg-core": "^6.4.2",
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"@fortawesome/free-solid-svg-icons": "^6.4.2",
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"@molgenis/vip-report-api": "^4.4.
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"@molgenis/vip-report-vcf": "^1.4.
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"@molgenis/vip-report-api": "^4.4.4",
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"@molgenis/vip-report-vcf": "^1.4.4",
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"@solidjs/router": "^0.8.3",
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"base64-js": "^1.5.1",
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"igv": "^2.15.10",
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@@ -100,7 +100,7 @@ export const FilterInheritance: Component<FilterInheritanceProps> = (props) => {
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<Checkbox
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value={VIM_TRUE}
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label="Match"
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desc="Genotypes, affected statuses and known gene inheritance patterns match."
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desc="Genotypes, affected statuses and known gene inheritance patterns match (can include de novo variants)."
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checked={isVimTrueChecked}
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onChange={onFilterChange}
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/>
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@@ -109,7 +109,7 @@ export const FilterInheritance: Component<FilterInheritanceProps> = (props) => {
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<Checkbox
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value={VIM_MISSING}
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label="Match: Possible"
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desc="Genotypes, affected statuses match but gene inheritance pattern is unknown.
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desc="Genotypes, affected statuses match but gene inheritance pattern is unknown (can include de novo variants)."
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checked={isVimMissingChecked}
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onChange={onFilterChange}
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/>
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@@ -119,7 +119,7 @@ export const FilterInheritance: Component<FilterInheritanceProps> = (props) => {
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value={VID}
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label="De novo"
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desc="On autosomes:
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- Available parents do not have the variant, or genotype is missing.
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On the X chromosome:
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- Female proband: same as autosomes.
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- Male proband: Mother does not have the variant, or mother genotype missing."
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@@ -32,14 +32,14 @@ export const ClinVar: Component<FieldProps> = (props) => {
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};
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const href = () => {
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const clinVarIdsField = getCsqInfoIndex(props.infoMeta, "
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const clinVarIds = clinVarIdsField ? (getCsqInfo(props.info, clinVarIdsField) as number[]) : [];
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const clinVarIdsField = getCsqInfoIndex(props.infoMeta, "clinVar_CLNID");
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const clinVarIds = clinVarIdsField !== -1 ? (getCsqInfo(props.info, clinVarIdsField) as number[]) : [];
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return clinVarIds.length === 1 ? `https://www.ncbi.nlm.nih.gov/clinvar/variation/${clinVarIds[0]}/` : undefined;
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};
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const description = () => {
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const statusField = getCsqInfoIndex(props.infoMeta, "clinVar_CLNREVSTAT");
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const status = statusField ? (getCsqInfo(props.info, statusField) as string[]) : [];
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const status = statusField !== -1 ? (getCsqInfo(props.info, statusField) as string[]) : [];
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if (status.length === 0) return;
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let description;
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