@molgenis/vip-report-template 2.7.3 → 3.0.0-beta

package/src/types/DecisionTree.d.ts

@@ -1,96 +0,0 @@
-type Outcome = {
-  nextNode: string;
-};
-
-export type Exists = 'EXISTS';
-
-type BoolOutcome = {
-  outcomeTrue: Outcome;
-  outcomeFalse: Outcome;
-};
-
-type Query = {
-  field: string;
-  operator: string;
-  value: string | string[] | number | number[];
-};
-
-type BoolNode = {
-  type: 'BOOL';
-  query: Query;
-  outcomeMissing?: Outcome;
-} & BoolOutcome;
-
-type MultiOperator = 'AND' | 'OR';
-
-type BoolMultiQuery = {
-  operator?: MultiOperator;
-  queries: Query[];
-  outcomeTrue: Outcome;
-};
-
-type BoolMultiNode = {
-  type: 'BOOL_MULTI';
-  fields: string[];
-  outcomes: BoolMultiQuery[];
-  outcomeMissing?: Outcome;
-  outcomeDefault?: Outcome;
-};
-
-type ExistsNode = {
-  type: Exists;
-  field: string;
-} & BoolOutcome;
-
-type CategoricalNode = {
-  type: 'CATEGORICAL';
-  field: string;
-  outcomeMap: {
-    [key: string]: Outcome;
-  };
-  outcomeMissing?: Outcome;
-  outcomeDefault?: Outcome;
-};
-
-type ExitNode = {
-  type: 'LEAF';
-  class: string;
-};
-
-type NodeDescription = { description: string };
-
-type NodeWithSimpleOutcome = NodeDescription & (BoolNode | ExistsNode);
-type NodeWithCategoricalOutcome = NodeDescription & CategoricalNode;
-type NodeWithBoolMultiOutcome = NodeDescription & BoolMultiNode;
-
-type Edge = { from: string; to: string; label: string };
-
-export type NodeWithOutcome = NodeWithSimpleOutcome | NodeWithCategoricalOutcome | NodeWithBoolMultiOutcome;
-
-export type Node = NodeWithOutcome | ExitNode;
-
-export type DecisionTree = {
-  [key: string]: unknown;
-  nodes: {
-    [key: string]: Node;
-  };
-};
-
-export type TreeEdgesObj = {
-  [key: string]: Edge;
-};
-
-export type TreeEdgesArray = Edge[];
-
-export type TreeNodes = Array<{ id: string; label: string; type: string }>;
-
-export type OutcomeTypeEnum = 'True' | 'False' | 'Missing' | 'Default';
-
-export type OutcomeEnum = 'outcomeTrue' | 'outcomeFalse' | 'outcomeMissing' | 'outcomeDefault';
-
-export type Coordinates = {
-  x1: number;
-  x2: number;
-  y1: number;
-  y2: number;
-};

package/src/types/Gene.ts

@@ -1,4 +0,0 @@
-export interface Gene {
-  symbol: string | null;
-  incompletePenetrance: boolean | false;
-}

package/src/types/GenomeBrowserDb.ts

@@ -1,7 +0,0 @@
-export enum GenomeBrowserDb {
-  hg16 = 'hg16',
-  hg17 = 'hg17',
-  hg18 = 'hg18',
-  hg19 = 'hg19',
-  hg38 = 'hg38'
-}

package/src/types/State.ts

@@ -1,18 +0,0 @@
-import { Api, Vcf } from '@molgenis/vip-report-api';
-import { Alert } from '@/types/Alert';
-import { Annotations } from '@/types/Annotations';
-
-export type State = {
-  alerts: Array<Alert>;
-  metadata: Api.Metadata | null;
-  samples: Api.PagedItems<Api.Sample> | null;
-  selectedSample: Api.Sample | null;
-  selectedSamplePhenotypes: Api.PagedItems<Api.Phenotype> | null;
-  records: Api.PagedItems<Vcf.Record> | null;
-  selectedRecord: Vcf.Record | null;
-  filterRecordsByPhenotype: boolean;
-  filterRecordsByInheritance: boolean;
-  filterRecordsByDenovo: boolean;
-  filterRecordsByDepth: boolean;
-  annotations: Annotations | null;
-};

package/src/types/Variant.ts

@@ -1,6 +0,0 @@
-export interface Variant {
-  chr: string;
-  pos: number;
-  ref: string;
-  alt: string | null;
-}