@molgenis/vip-report-template 2.6.4 → 2.7.0

package/.scannerwork/css-bundle/stylelintconfig.json

@@ -1 +1 @@
-{"rules":{"block-no-empty":true,"string-no-newline":true,"comment-no-empty":true,"function-linear-gradient-no-nonstandard-direction":true,"media-feature-name-no-unknown":true,"color-no-invalid-hex":true,"font-family-no-duplicate-names":true,"no-duplicate-at-import-rules":true,"declaration-block-no-duplicate-properties":[true,{"ignore":["consecutive-duplicates-with-different-values"]}],"no-empty-source":true,"selector-type-no-unknown":[true,{"ignoreTypes":["/^(mat|md|fa)-/"],"ignore":["custom-elements"]}],"at-rule-no-unknown":[true,{"ignoreAtRules":["value","at-root","content","debug","each","else","error","for","function","if","include","mixin","return","warn","while","extend","use","/^@.*/"]}],"no-duplicate-selectors":true,"font-family-no-missing-generic-family-keyword":true,"no-extra-semicolons":true,"no-invalid-double-slash-comments":true,"selector-pseudo-element-no-unknown":[true,{"ignorePseudoElements":["ng-deep","v-deep"]}],"selector-pseudo-class-no-unknown":[true,{"ignorePseudoClasses":["local","global","export","import"]}],"keyframe-declaration-no-important":true,"property-no-unknown":[true,{"ignoreProperties":["composes","/^mso-/"],"ignoreSelectors":["/^:export.*/","/^:import.*/"]}],"declaration-block-no-shorthand-property-overrides":true,"unit-no-unknown":[true,{"ignoreUnits":["x"]}],"function-calc-no-invalid":true}}
+{"rules":{"block-no-empty":true,"comment-no-empty":true,"string-no-newline":true,"function-linear-gradient-no-nonstandard-direction":true,"media-feature-name-no-unknown":true,"color-no-invalid-hex":true,"font-family-no-duplicate-names":true,"no-duplicate-at-import-rules":true,"no-empty-source":true,"declaration-block-no-duplicate-properties":[true,{"ignore":["consecutive-duplicates-with-different-values"]}],"selector-type-no-unknown":[true,{"ignoreTypes":["/^(mat|md|fa)-/"],"ignore":["custom-elements"]}],"at-rule-no-unknown":[true,{"ignoreAtRules":["value","at-root","content","debug","each","else","error","for","function","if","include","mixin","return","warn","while","extend","use","/^@.*/"]}],"no-duplicate-selectors":true,"font-family-no-missing-generic-family-keyword":true,"no-extra-semicolons":true,"no-invalid-double-slash-comments":true,"selector-pseudo-element-no-unknown":[true,{"ignorePseudoElements":["ng-deep","v-deep"]}],"selector-pseudo-class-no-unknown":[true,{"ignorePseudoClasses":["local","global","export","import"]}],"keyframe-declaration-no-important":true,"property-no-unknown":[true,{"ignoreProperties":["composes","/^mso-/"],"ignoreSelectors":["/^:export.*/","/^:import.*/"]}],"declaration-block-no-shorthand-property-overrides":true,"unit-no-unknown":[true,{"ignoreUnits":["x"]}],"function-calc-no-invalid":true}}

package/.scannerwork/report-task.txt

@@ -1,8 +1,8 @@
 organization=molgenis
 projectKey=molgenis_vip-report-template
 serverUrl=https://sonarcloud.io
-serverVersion=8.0.0.24741
-branch=v2.6.4
-dashboardUrl=https://sonarcloud.io/dashboard?id=molgenis_vip-report-template&branch=v2.6.4&resolved=false
-ceTaskId=AX0T2xjdaerFL8lWJ0CL
-ceTaskUrl=https://sonarcloud.io/api/ce/task?id=AX0T2xjdaerFL8lWJ0CL
+serverVersion=8.0.0.25095
+branch=v2.7.0
+dashboardUrl=https://sonarcloud.io/dashboard?id=molgenis_vip-report-template&branch=v2.7.0&resolved=false
+ceTaskId=AX1XHdIGtnZUQKKxYAWZ
+ceTaskUrl=https://sonarcloud.io/api/ce/task?id=AX1XHdIGtnZUQKKxYAWZ

package/.travis.yml

@@ -1,6 +1,10 @@
 language: node_js
 node_js:
 - lts/*
+branches:
+  only:
+    - master
+    - /^v\d+\.\d+(\.\d+)?(-\S*)?$/    
 addons:
   sonarcloud:
     organization: molgenis
@@ -26,4 +30,4 @@ deploy:
     file: dist/vip-report-template.html
     on:
       tags: true
-    edge: true # opt in to dpl v2
+    edge: true # opt in to dpl v2

package/README.md

@@ -1,4 +1,4 @@
-[![Build Status](https://travis-ci.com/molgenis/vip-report-template.svg?branch=master)](https://travis-ci.com/molgenis/vip-report-template)
+[![Build Status](https://app.travis-ci.com/molgenis/vip-report-template.svg?branch=master)](https://app.travis-ci.com/molgenis/vip-report-template)
 [![Quality Status](https://sonarcloud.io/api/project_badges/measure?project=molgenis_vip-report-template&metric=alert_status)](https://sonarcloud.io/dashboard?id=molgenis_vip-report-template)
 # Variant Interpretation Pipeline - VCF Report Generator
 See https://github.com/molgenis/vip-report#readme

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@molgenis/vip-report-template",
-  "version": "2.6.4",
+  "version": "2.7.0",
   "description": "Report Template for Variant Call Format (VCF) Report Generator",
   "scripts": {
     "serve": "vue-cli-service serve",
@@ -17,7 +17,7 @@
     "dagre": "^0.8.5",
     "fflate": "^0.6.10",
     "file-saver": "^2.0.5",
-    "igv": "^2.10.0",
+    "igv": "^2.10.4",
     "vue": "^2.6.12",
     "vue-class-component": "^7.2.6",
     "vue-i18n": "^8.24.0",

package/src/components/Gene.vue

@@ -0,0 +1,30 @@
+<template>
+  <span>
+    <Anchor
+      :href="'https://www.omim.org/search?search=' + encodeURIComponent(value.symbol) + '&field=approved_gene_symbol'"
+      :text="value.symbol"
+    />
+    <b-button pill
+      v-if="value.incompletePenetrance"
+      size="sm"
+      variant="info"
+              class="ml-2 p-0"
+      v-b-tooltip.click
+      :title="$t('incompletePenetrance')"
+    >     <sup>IP</sup>
+    </b-button>
+  </span>
+</template>
+
+<script lang="ts">
+import Vue, { PropType } from 'vue';
+import Anchor from '@/components/Anchor.vue';
+import { Gene } from '@/types/Gene';
+
+export default Vue.extend({
+  components: { Anchor },
+  props: {
+    value: { type: Object as PropType<Gene> }
+  }
+});
+</script>