@molecule/api-ai-tools 1.17.9 → 1.17.11

package/README.md

@@ -3,7 +3,7 @@ AUTO-GENERATED — DO NOT EDIT THIS FILE.
 Generated by `mlcl sync-docs` from the package's src/index.ts JSDoc + mlcl/registry.json.
 Edits here are overwritten on the next commit (molecule's pre-commit hook regenerates).
 To change this document, edit the module-level JSDoc in src/index.ts.
-Generated: 2026-11-08T00:13:16.790Z
+Generated: 2026-11-12T08:35:53.429Z
 -->
 
 # @molecule/api-ai-tools
@@ -2341,9 +2341,9 @@ Evidence, in order — never a guess:
 - the runner's own summary, when it printed one: it is a finish only if it accounts for the total
   the runner announced. A summary that accounts for fewer is a walk a process stopped early, and
   falls through to the branches below with its own counts ({@link suiteSummary}).
-- `timeout`'s own 124 (the code the backend's wrapper returns whenever the TOOL's budget fired,
-  whatever the pipeline ended with) — and, when the clock says the command's own smaller bound
-  ran out first and less than the budget, that bound instead.
+- exit code 124 together with the measured clock reaching the tool's bound, or the command's
+  own smaller bound when that elapsed first. An early 124 without either clock is preserved
+  as the command's own exit; it does not establish a tool-budget cut.
 - the command carried its own `timeout <N>`, N is inside this tool's budget (a larger one never
   fires — the tool's does), the run used N, and no runner printed a closing summary: the run was
   killed at its own bound. Its exit code, when the pipeline handed one back, is the filter's.
@@ -6019,6 +6019,8 @@ Peer dependencies:
 - `@molecule/api-ai`
 - `typescript`
 
+- `outputFilterAfterRunner` returns only removable output cuts. File redirects, in-place
+  edits and filter programs with write or execution effects retain their pipelines.
 - Playwright commands apply `excludedTestTitles` before launch. Existing
   literal filters remain in effect. Dynamic filters and opaque launchers stay unchanged.
 - **Trimmed test output keeps every failure named.** Shared log cuts prioritize capped
@@ -6042,7 +6044,11 @@ Peer dependencies:
   execution. `commandStepView` reads the active step for diagnostics; `logicalCommandText`
   exposes the planned commands for static classification. Preserve the descriptor when
   wrapping again. The metadata is advisory and never establishes a completed test result.
-- **`yieldOnFirstFailureFor`** can yield one still-running deployed task's concrete diagnostic; callers opt out after a prior wait result or unknown history.
+- **`yieldOnFirstFailureFor`** lets `wait_for_task` yield new final-failure causes from a
+  still-running deployed task. Fix while it walks; once every known cause is fixed, deploy
+  now, let the task keep finding causes until the deploy lands and stops it, then collect
+  its stopped or completed result with `wait_for_task`. A local diagnostic tests mutable
+  source: collect or stop it before editing that source, since edits invalidate its result.
 - **`wait_for_task` state probes report current progress without guessing log growth.**
   A call shorter than one normal two-second poll omits both growth and no-growth
   claims; task age, log counters and time-left estimates remain available.
@@ -6059,6 +6065,10 @@ Peer dependencies:
   rules via `blockCommand` (return an actionable error string to refuse — it is
   shown to the model verbatim) and enable `blockDangerousCommands` (default
   FALSE) where appropriate.
+- **An early exit code `124` is not proof that the tool budget elapsed.**
+  Programs and nested `timeout` calls may return it sooner. The cut-run
+  result requires the measured clock or the runner's own partial tally;
+  otherwise the command keeps its actual exit code without a guessed duration.
 - **`read_file` takes `paths` as well as `path`.** An agent that issues one
   tool call per model round-trip pays a full round-trip per file, so a project
   survey costs minutes; batched, the same reads cost one call each 25 files

package/dist/cut-run.d.ts

@@ -22,7 +22,8 @@
  *    not finish. This is the first shape.
  * 2. **This tool's budget** — the backend runs the command under `timeout` (see
  *    `backends/sandbox.ts`), which reports 124 whatever the pipeline did, and returns everything
- *    printed until then. The budget is the tool's own, so its number belongs to the tool.
+ *    printed until then. The measured elapsed time must reach that budget: a program or inner
+ *    timeout can return 124 sooner, so the exit code by itself does not establish the cause.
  *
  * A runner's closing summary is what separates "used the bound and finished" from "stopped at the
  * bound", but it is only half the evidence: Playwright prints one when its process is stopped too,
@@ -184,9 +185,9 @@ export interface CutRun {
  * - the runner's own summary, when it printed one: it is a finish only if it accounts for the total
  *   the runner announced. A summary that accounts for fewer is a walk a process stopped early, and
  *   falls through to the branches below with its own counts ({@link suiteSummary}).
- * - `timeout`'s own 124 (the code the backend's wrapper returns whenever the TOOL's budget fired,
- *   whatever the pipeline ended with) — and, when the clock says the command's own smaller bound
- *   ran out first and less than the budget, that bound instead.
+ * - exit code 124 together with the measured clock reaching the tool's bound, or the command's
+ *   own smaller bound when that elapsed first. An early 124 without either clock is preserved
+ *   as the command's own exit; it does not establish a tool-budget cut.
  * - the command carried its own `timeout <N>`, N is inside this tool's budget (a larger one never
  *   fires — the tool's does), the run used N, and no runner printed a closing summary: the run was
  *   killed at its own bound. Its exit code, when the pipeline handed one back, is the filter's.

package/dist/cut-run.d.ts.map

@@ -1 +1 @@
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package/dist/cut-run.js

@@ -22,7 +22,8 @@
  *    not finish. This is the first shape.
  * 2. **This tool's budget** — the backend runs the command under `timeout` (see
  *    `backends/sandbox.ts`), which reports 124 whatever the pipeline did, and returns everything
- *    printed until then. The budget is the tool's own, so its number belongs to the tool.
+ *    printed until then. The measured elapsed time must reach that budget: a program or inner
+ *    timeout can return 124 sooner, so the exit code by itself does not establish the cause.
  *
  * A runner's closing summary is what separates "used the bound and finished" from "stopped at the
  * bound", but it is only half the evidence: Playwright prints one when its process is stopped too,
@@ -248,9 +249,9 @@ function runProgress(text, suite, summary) {
  * - the runner's own summary, when it printed one: it is a finish only if it accounts for the total
  *   the runner announced. A summary that accounts for fewer is a walk a process stopped early, and
  *   falls through to the branches below with its own counts ({@link suiteSummary}).
- * - `timeout`'s own 124 (the code the backend's wrapper returns whenever the TOOL's budget fired,
- *   whatever the pipeline ended with) — and, when the clock says the command's own smaller bound
- *   ran out first and less than the budget, that bound instead.
+ * - exit code 124 together with the measured clock reaching the tool's bound, or the command's
+ *   own smaller bound when that elapsed first. An early 124 without either clock is preserved
+ *   as the command's own exit; it does not establish a tool-budget cut.
  * - the command carried its own `timeout <N>`, N is inside this tool's budget (a larger one never
  *   fires — the tool's does), the run used N, and no runner printed a closing summary: the run was
  *   killed at its own bound. Its exit code, when the pipeline handed one back, is the filter's.
@@ -310,15 +311,20 @@ export function commandCutRun(command, result, elapsedMs, budgetSeconds = 0, raw
             ownBoundStops &&
             elapsedMs >= atBoundMs(declared) &&
             elapsedMs < atBoundMs(budgetSeconds);
-        return {
-            seconds: ownFired ? declared : budgetSeconds,
-            stoppedBy: ownFired ? 'command-timeout' : 'tool-budget',
-            background,
-            exitCode,
-            ...progress,
-            doing,
-            inlineScript,
-        };
+        // An inner timeout, or an ordinary program, can return 124 before this
+        // tool's bound. Its code alone proves neither a whole-command timeout nor
+        // that the configured budget elapsed. Preserve that result unless the
+        // measured clock or the runner's own partial tally supplies the evidence.
+        if (ownFired || elapsedMs >= atBoundMs(budgetSeconds))
+            return {
+                seconds: ownFired ? declared : budgetSeconds,
+                stoppedBy: ownFired ? 'command-timeout' : 'tool-budget',
+                background,
+                exitCode,
+                ...progress,
+                doing,
+                inlineScript,
+            };
     }
     if (declared !== null && ownBoundStops && elapsedMs >= atBoundMs(declared)) {
         return {

package/dist/index.d.ts

@@ -12,6 +12,8 @@
  * (identity, tool listing, project docs, discovered skills).
  *
  * @remarks
+ * - `outputFilterAfterRunner` returns only removable output cuts. File redirects, in-place
+ *   edits and filter programs with write or execution effects retain their pipelines.
  * - Playwright commands apply `excludedTestTitles` before launch. Existing
  *   literal filters remain in effect. Dynamic filters and opaque launchers stay unchanged.
  * - **Trimmed test output keeps every failure named.** Shared log cuts prioritize capped
@@ -35,7 +37,11 @@
  *   execution. `commandStepView` reads the active step for diagnostics; `logicalCommandText`
  *   exposes the planned commands for static classification. Preserve the descriptor when
  *   wrapping again. The metadata is advisory and never establishes a completed test result.
- * - **`yieldOnFirstFailureFor`** can yield one still-running deployed task's concrete diagnostic; callers opt out after a prior wait result or unknown history.
+ * - **`yieldOnFirstFailureFor`** lets `wait_for_task` yield new final-failure causes from a
+ *   still-running deployed task. Fix while it walks; once every known cause is fixed, deploy
+ *   now, let the task keep finding causes until the deploy lands and stops it, then collect
+ *   its stopped or completed result with `wait_for_task`. A local diagnostic tests mutable
+ *   source: collect or stop it before editing that source, since edits invalidate its result.
  * - **`wait_for_task` state probes report current progress without guessing log growth.**
  *   A call shorter than one normal two-second poll omits both growth and no-growth
  *   claims; task age, log counters and time-left estimates remain available.
@@ -52,6 +58,10 @@
  *   rules via `blockCommand` (return an actionable error string to refuse — it is
  *   shown to the model verbatim) and enable `blockDangerousCommands` (default
  *   FALSE) where appropriate.
+ * - **An early exit code `124` is not proof that the tool budget elapsed.**
+ *   Programs and nested `timeout` calls may return it sooner. The cut-run
+ *   result requires the measured clock or the runner's own partial tally;
+ *   otherwise the command keeps its actual exit code without a guessed duration.
  * - **`read_file` takes `paths` as well as `path`.** An agent that issues one
  *   tool call per model round-trip pays a full round-trip per file, so a project
  *   survey costs minutes; batched, the same reads cost one call each 25 files

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -12,6 +12,8 @@
  * (identity, tool listing, project docs, discovered skills).
  *
  * @remarks
+ * - `outputFilterAfterRunner` returns only removable output cuts. File redirects, in-place
+ *   edits and filter programs with write or execution effects retain their pipelines.
  * - Playwright commands apply `excludedTestTitles` before launch. Existing
  *   literal filters remain in effect. Dynamic filters and opaque launchers stay unchanged.
  * - **Trimmed test output keeps every failure named.** Shared log cuts prioritize capped
@@ -35,7 +37,11 @@
  *   execution. `commandStepView` reads the active step for diagnostics; `logicalCommandText`
  *   exposes the planned commands for static classification. Preserve the descriptor when
  *   wrapping again. The metadata is advisory and never establishes a completed test result.
- * - **`yieldOnFirstFailureFor`** can yield one still-running deployed task's concrete diagnostic; callers opt out after a prior wait result or unknown history.
+ * - **`yieldOnFirstFailureFor`** lets `wait_for_task` yield new final-failure causes from a
+ *   still-running deployed task. Fix while it walks; once every known cause is fixed, deploy
+ *   now, let the task keep finding causes until the deploy lands and stops it, then collect
+ *   its stopped or completed result with `wait_for_task`. A local diagnostic tests mutable
+ *   source: collect or stop it before editing that source, since edits invalidate its result.
  * - **`wait_for_task` state probes report current progress without guessing log growth.**
  *   A call shorter than one normal two-second poll omits both growth and no-growth
  *   claims; task age, log counters and time-left estimates remain available.
@@ -52,6 +58,10 @@
  *   rules via `blockCommand` (return an actionable error string to refuse — it is
  *   shown to the model verbatim) and enable `blockDangerousCommands` (default
  *   FALSE) where appropriate.
+ * - **An early exit code `124` is not proof that the tool budget elapsed.**
+ *   Programs and nested `timeout` calls may return it sooner. The cut-run
+ *   result requires the measured clock or the runner's own partial tally;
+ *   otherwise the command keeps its actual exit code without a guessed duration.
  * - **`read_file` takes `paths` as well as `path`.** An agent that issues one
  *   tool call per model round-trip pays a full round-trip per file, so a project
  *   survey costs minutes; batched, the same reads cost one call each 25 files

package/dist/output-filter-safety.d.ts

@@ -0,0 +1,10 @@
+/** The common safety check for pipeline filters the tool may remove. */
+import type { CommandSegment } from './command-position.js';
+/**
+ * Whether dropping a pipeline stage can only change what is printed. A redirect, in-place
+ * edit or a filter program that writes or executes another command must retain its pipeline.
+ * @param segment - One stage from the shared shell reader.
+ * @returns True for a filter with no known write or execution effects.
+ */
+export declare function isOutputOnlyFilter(segment: CommandSegment): boolean;
+//# sourceMappingURL=output-filter-safety.d.ts.map

package/dist/output-filter-safety.d.ts.map

@@ -0,0 +1 @@
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package/dist/output-filter-safety.js

@@ -0,0 +1,44 @@
+const OUTPUT_ONLY_FILTERS = new Set([
+    'awk',
+    'cat',
+    'column',
+    'cut',
+    'egrep',
+    'fgrep',
+    'fmt',
+    'fold',
+    'grep',
+    'head',
+    'jq',
+    'nl',
+    'rg',
+    'sed',
+    'sort',
+    'tail',
+    'tr',
+    'uniq',
+    'wc',
+]);
+/** Output to a file; joining stderr with stdout is not a file write. */
+const OUTPUT_REDIRECT = /^(?:\d*|&)>>?(?!&)/;
+/**
+ * Whether dropping a pipeline stage can only change what is printed. A redirect, in-place
+ * edit or a filter program that writes or executes another command must retain its pipeline.
+ * @param segment - One stage from the shared shell reader.
+ * @returns True for a filter with no known write or execution effects.
+ */
+export function isOutputOnlyFilter(segment) {
+    if (!OUTPUT_ONLY_FILTERS.has(segment.program))
+        return false;
+    if (segment.args.some((arg) => OUTPUT_REDIRECT.test(arg)))
+        return false;
+    if (segment.program === 'sed' &&
+        segment.args.some((arg) => /^(?:--in-place\b|-[A-Za-z]*i)/.test(arg)))
+        return false;
+    if (segment.program === 'awk' || segment.program === 'sed') {
+        const program = segment.args.map((arg) => arg.replace(/^['"]|['"]$/g, '')).join(' ');
+        if (/\bsystem\s*\(|>|\bw\s+\S/.test(program))
+            return false;
+    }
+    return true;
+}

package/dist/output-filter.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"output-filter.d.ts","sourceRoot":"","sources":["../src/output-filter.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,EACL,KAAK,cAAc,EAGpB,MAAM,uBAAuB,CAAA;AAU9B,4FAA4F;AAC5F,MAAM,WAAW,kBAAkB;IACjC;;;;OAIG;IACH,KAAK,EAAE,MAAM,CAAA;IACb,+FAA+F;IAC/F,IAAI,EAAE,MAAM,CAAA;IACZ;;;;OAIG;IACH,OAAO,EAAE,MAAM,CAAA;CAChB;AAED;;;;;;;;;;;;;;;;;;;;GAoBG;AACH,wBAAgB,uBAAuB,CACrC,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,CAAC,OAAO,EAAE,cAAc,KAAK,OAAO,EAC1C,UAAU,SAAI,GACb,kBAAkB,GAAG,IAAI,CAwC3B"}

package/dist/output-filter.js

@@ -17,6 +17,7 @@
  * @module
  */
 import { locatedCommandSegments, } from './command-position.js';
+import { isOutputOnlyFilter } from './output-filter-safety.js';
 /**
  * The programs whose job is to re-shape what an earlier stage printed and that can DROP lines —
  * the reader's own cut, never part of the run. `tee`, `sort` and `wc` are output plumbing too, but
@@ -68,7 +69,9 @@ export function outputFilterAfterRunner(command, runs, occurrence = 1) {
         const entry = entries[index];
         if (!entry || entry.separator.trim() !== '|')
             break;
-        if (!entry.segment || !CUTTING_FILTERS.has(entry.segment.program))
+        if (!entry.segment ||
+            !CUTTING_FILTERS.has(entry.segment.program) ||
+            !isOutputOnlyFilter(entry.segment))
             break;
         chain.push(entry);
         if (entry.terminator.trim() !== '|')

package/dist/tools.js

@@ -3802,7 +3802,7 @@ export function buildTools(backend, config) {
                         // deployed run it belongs to can no longer pass and a local edit cannot void a green
                         // proof. Keep discovering causes during the repair, then replace the failed build:
                         // waiting after its known causes were fixed cost l1671 another 295 s without learning
-                        // another cause. Retirement must precede replacement so no walk mixes builds or data.
+                        // another cause. The landed deploy stops this walk before the next one starts.
                         note: localDiagnostic
                             ? 'A test in this local diagnostic has failed on its final attempt. This is partial ' +
                                 'output, not a completed result; the task is still running against mutable local source. ' +
@@ -3827,9 +3827,9 @@ export function buildTools(backend, config) {
                                 'pass. This is partial log output, not a completed result: leave the task running while you fix ' +
                                 'and collect any new causes it exposes. Local edits do not change this deployed ' +
                                 'build, so start on this failure now: read the failing spec and the code it drives, ' +
-                                'and fix it while the run keeps walking. Once every known cause is fixed, deploy now ' +
-                                'rather than waiting for this failed walk to finish. The deploy must retire this task before replacing the build; ' +
-                                'collect its stopped or completed result with `wait_for_task`. Do not start a second test run while this task is running. ' +
+                                'and fix it while the run keeps walking. Once every known cause is fixed, deploy now; ' +
+                                'the task keeps finding causes until the deploy lands and stops it, then collect its stopped or completed result ' +
+                                'with `wait_for_task`. Do not start a second test run while this task is running. ' +
                                 'Its remaining tests stay unmeasured; hand-back still requires the full supplied suite against the new deployed build to pass with its own settings.',
                     };
                 }

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package/dist/utilities.js

@@ -11,6 +11,7 @@ import { commandSegments, executedCommands, locatedCommandSegments, statementArg
 import { classifyRunFailure } from './failure-kind.js';
 import { boundedFailureText } from './failure-text.js';
 import { commandRunsNoTests } from './no-test-run.js';
+import { isOutputOnlyFilter } from './output-filter-safety.js';
 import { PLAYWRIGHT_REPORT_ENV } from './playwright-report.js';
 import { requestScopedCommand } from './request-test-exclusions.js';
 import { isDiagnosisRun, playwrightCommandTarget, resolvePlaywrightSelectionPaths, scopedRerunCommand, suiteCommandTarget, suiteRunInTheWay, withoutHeredocs, withSuiteConfig, } from './suite-overlap.js';
@@ -1345,36 +1346,6 @@ export function isPlaywrightRunCommand(command) {
         return false;
     return commandSegments(command).some((segment) => /^playwright\s+test\b/.test(segment.text));
 }
-/**
- * The programs a pipeline may end with when all they do is read what the runner printed and print
- * it again — the filters a background suite may lose without changing what it ran.
- *
- * Everything else stays: `tee` writes a file, `xargs` runs a command, and an unknown program may
- * do either. Dropping a filter is only sound where the parse can PROVE it is output-only.
- */
-const OUTPUT_ONLY_FILTERS = new Set([
-    'awk',
-    'cat',
-    'column',
-    'cut',
-    'egrep',
-    'fgrep',
-    'fmt',
-    'fold',
-    'grep',
-    'head',
-    'jq',
-    'nl',
-    'rg',
-    'sed',
-    'sort',
-    'tail',
-    'tr',
-    'uniq',
-    'wc',
-]);
-/** A word that sends output to a file (`> f`, `>> f`, `2> f`); `2>&1` only joins stderr, so it is not one. */
-const OUTPUT_REDIRECT = /^(?:\d*|&)>>?(?!&)/;
 /**
  * The shell parse's segments with their offsets in the command.
  *
@@ -1406,31 +1377,6 @@ function locatedSegments(command) {
     }
     return out;
 }
-/**
- * Whether a pipeline stage only reads the output it is handed and prints it again.
- *
- * `sed`/`awk` are listed for the filters they usually are (`sed -n '1,20p'`, `awk '{print $1}'`),
- * but a program that can WRITE is not output-only: `-i` edits a file in place, and a program that
- * names `>`, `w <file>` or `system(` writes a file or runs a command. Those keep their pipe.
- *
- * @param segment - One pipeline stage of the shell parse.
- * @returns True when dropping the stage can only change what is printed.
- */
-function isOutputOnlyFilter(segment) {
-    if (!OUTPUT_ONLY_FILTERS.has(segment.program))
-        return false;
-    if (segment.args.some((arg) => OUTPUT_REDIRECT.test(arg)))
-        return false;
-    if (segment.program === 'sed' &&
-        segment.args.some((arg) => /^(?:--in-place\b|-[A-Za-z]*i)/.test(arg)))
-        return false;
-    if (segment.program === 'awk' || segment.program === 'sed') {
-        const program = segment.args.map((arg) => arg.replace(/^['"]|['"]$/g, '')).join(' ');
-        if (/\bsystem\s*\(|>|\bw\s+\S/.test(program))
-            return false;
-    }
-    return true;
-}
 /**
  * The command's last step, when that step runs a suite: the suite's own segment and every stage
  * piped after it. Null when no suite runs, or when the suite is not the last step — a `;` or `&&`

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@molecule/api-ai-tools",
-  "version": "1.17.9",
+  "version": "1.17.11",
   "description": "Shared AI agent tools with backend abstraction for sandbox and local execution",
   "type": "module",
   "main": "dist/index.js",