@mneme-ai/mcp 1.9.0 → 1.17.2

package/dist/dynamic-mcp.integration.test.d.ts

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+/**
+ * Dynamic MCP integration test — full pipeline from a fixture repo to
+ * compiled tool catalog.
+ *
+ * This test wires together:
+ *   • detectEcosystems (against fixture repo)
+ *   • loadAllPacks (real Stripe pack from disk)
+ *   • buildActiveToolCatalog (tools the MCP server would expose)
+ *   • executeQuery (the actual tool execution)
+ *   • augmentDescription (tribal knowledge composition)
+ *
+ * If any layer breaks, this test fails LOUDLY.
+ */
+export {};
+//# sourceMappingURL=dynamic-mcp.integration.test.d.ts.map

package/dist/dynamic-mcp.integration.test.d.ts.map

@@ -0,0 +1 @@
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package/dist/dynamic-mcp.integration.test.js

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+/**
+ * Dynamic MCP integration test — full pipeline from a fixture repo to
+ * compiled tool catalog.
+ *
+ * This test wires together:
+ *   • detectEcosystems (against fixture repo)
+ *   • loadAllPacks (real Stripe pack from disk)
+ *   • buildActiveToolCatalog (tools the MCP server would expose)
+ *   • executeQuery (the actual tool execution)
+ *   • augmentDescription (tribal knowledge composition)
+ *
+ * If any layer breaks, this test fails LOUDLY.
+ */
+import { describe, it, expect, beforeEach, afterEach } from "vitest";
+import { mkdtempSync, mkdirSync, writeFileSync, rmSync } from "node:fs";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+import { execSync } from "node:child_process";
+import { dynamic } from "@mneme-ai/core";
+const { detectEcosystems, loadAllPacks, getDefaultPackSearchPaths, getBundledPacksDir, buildActiveToolCatalog, lookupTool, executeQuery, augmentDescription, } = dynamic;
+let tmp;
+beforeEach(() => {
+    tmp = mkdtempSync(join(tmpdir(), "mneme-dyn-int-"));
+    execSync("git init -q", { cwd: tmp });
+    execSync("git config user.email a@x", { cwd: tmp });
+    execSync("git config user.name TestUser", { cwd: tmp });
+});
+afterEach(() => {
+    try {
+        rmSync(tmp, { recursive: true, force: true });
+    }
+    catch { }
+});
+describe("Dynamic MCP — Stripe pack end-to-end", () => {
+    it("MCP would expose 3 Stripe tools when repo uses Stripe", () => {
+        // 1. Set up a fixture Stripe-using repo
+        writeFileSync(join(tmp, "package.json"), JSON.stringify({
+            dependencies: { stripe: "^14.0.0" },
+        }));
+        mkdirSync(join(tmp, "src"));
+        writeFileSync(join(tmp, "src/billing.ts"), `
+      import Stripe from 'stripe';
+      const stripe = new Stripe('sk_test_xxx');
+      export async function listPrices() {
+        return stripe.prices.list({ limit: 100 });
+      }
+      export async function createSubscription(customerId: string) {
+        return stripe.subscriptions.create({ customer: customerId, items: [] });
+      }
+    `);
+        execSync("git add . && git commit -q -m initial", { cwd: tmp });
+        // 2. Run the full pipeline
+        const detection = detectEcosystems(tmp);
+        expect(detection.signals.some((s) => s.id === "stripe")).toBe(true);
+        const paths = getDefaultPackSearchPaths(tmp, getBundledPacksDir());
+        const loaded = loadAllPacks(paths);
+        expect(loaded.failures).toEqual([]);
+        expect(loaded.packs.some((p) => p.id === "stripe")).toBe(true);
+        const catalog = buildActiveToolCatalog({ detection, packs: loaded.packs });
+        const stripeTools = catalog.filter((t) => t.packId === "stripe");
+        expect(stripeTools.length).toBe(3);
+        expect(stripeTools.map((t) => t.name).sort()).toEqual([
+            "mneme.stripe.audit_pii_handlers",
+            "mneme.stripe.find_pricing_logic",
+            "mneme.stripe.list_webhook_handlers",
+        ]);
+    });
+    it("calling find_pricing_logic returns real query results from fixture repo", () => {
+        writeFileSync(join(tmp, "package.json"), JSON.stringify({
+            dependencies: { stripe: "^14.0.0" },
+        }));
+        mkdirSync(join(tmp, "src"));
+        writeFileSync(join(tmp, "src/billing.ts"), `
+      import Stripe from 'stripe';
+      const stripe = new Stripe('sk');
+      export async function listPrices() {
+        return stripe.prices.list();
+      }
+    `);
+        execSync("git add . && git commit -q -m initial", { cwd: tmp });
+        const paths = getDefaultPackSearchPaths(tmp, getBundledPacksDir());
+        const loaded = loadAllPacks(paths);
+        const found = lookupTool("mneme.stripe.find_pricing_logic", loaded.packs);
+        expect(found).not.toBeNull();
+        if (!found)
+            return;
+        const result = executeQuery(found.tool.query, tmp);
+        expect(result.ok).toBe(true);
+        if (!result.ok)
+            return;
+        if (result.result.kind !== "code-search")
+            throw new Error("expected code-search");
+        // Should have at least one hit on stripe.prices.list
+        expect(result.result.hits.length).toBeGreaterThan(0);
+        expect(result.result.hits.some((h) => h.path === "src/billing.ts")).toBe(true);
+    });
+    it("repo without Stripe → catalog empty (no false-positive tools)", () => {
+        writeFileSync(join(tmp, "package.json"), JSON.stringify({ dependencies: { react: "^18.0.0" } }));
+        mkdirSync(join(tmp, "src"));
+        writeFileSync(join(tmp, "src/app.tsx"), `import React from 'react';\nexport default () => <div/>;`);
+        execSync("git add . && git commit -q -m initial", { cwd: tmp });
+        const detection = detectEcosystems(tmp);
+        expect(detection.signals.some((s) => s.id === "stripe")).toBe(false);
+        const paths = getDefaultPackSearchPaths(tmp, getBundledPacksDir());
+        const loaded = loadAllPacks(paths);
+        const catalog = buildActiveToolCatalog({ detection, packs: loaded.packs });
+        const stripeTools = catalog.filter((t) => t.packId === "stripe");
+        expect(stripeTools).toEqual([]);
+    });
+    it("description augmentation composes correctly with tribal-knowledge data", () => {
+        const paths = getDefaultPackSearchPaths(tmp, getBundledPacksDir());
+        const loaded = loadAllPacks(paths);
+        const found = lookupTool("mneme.stripe.find_pricing_logic", loaded.packs);
+        if (!found)
+            throw new Error("stripe pack must load");
+        const baseDesc = found.tool.description;
+        const augmented = augmentDescription(baseDesc, found.tool.augmentation, {
+            hits: [
+                { path: "services/billing/v2/prices.ts", line: 10, snippet: "stripe.prices.list()", matchedPattern: "stripe.prices" },
+                { path: "services/billing/v2/prices.ts", line: 20, snippet: "stripe.prices.create()", matchedPattern: "stripe.prices" },
+                { path: "lib/stripe/old.ts", line: 5, snippet: "stripe.prices.update()", matchedPattern: "stripe.prices" },
+            ],
+            expertise: [
+                { path: "services/billing/v2/prices.ts", expert: "alice", atrophyScore: 25, daysSinceLastTouch: 7 },
+            ],
+            deprecations: [{
+                    path: "lib/stripe/old.ts",
+                    canonical: "services/billing/v2/",
+                    deprecatedInCommit: "abc12345",
+                    reason: "moved after PII audit found logging leaks",
+                }],
+            incidents: [{
+                    affectedPaths: ["lib/stripe/old.ts"],
+                    title: "PII leak in pricing logs",
+                    reportedAt: "2024-09-15T00:00:00Z",
+                }],
+            applicableRules: [{
+                    id: "regret-1",
+                    severity: "must-not",
+                    rule: "Don't log raw Stripe customer email in price-handling code",
+                    source: "regret",
+                }],
+        });
+        expect(augmented.facts.canonicalPath).toBe("services/billing/v2/prices.ts");
+        expect(augmented.facts.deprecatedPaths.length).toBe(1);
+        expect(augmented.facts.expertAuthors.length).toBe(1);
+        expect(augmented.facts.incidentSummaries.length).toBe(1);
+        expect(augmented.facts.ruleSummaries.length).toBe(1);
+        // Description embeds all 5 sections
+        expect(augmented.full).toMatch(/Canonical/);
+        expect(augmented.full).toMatch(/Deprecated/);
+        expect(augmented.full).toMatch(/alice owns/);
+        expect(augmented.full).toMatch(/Past incident/);
+        expect(augmented.full).toMatch(/MUST NOT/);
+    });
+});
+describe("Dynamic MCP — robustness", () => {
+    it("packs failing to load do NOT crash anything (degraded gracefully)", () => {
+        // The bundled pack always loads. The fixture is just to verify no crash.
+        const paths = getDefaultPackSearchPaths(tmp, getBundledPacksDir());
+        const loaded = loadAllPacks(paths);
+        expect(Array.isArray(loaded.packs)).toBe(true);
+        expect(Array.isArray(loaded.failures)).toBe(true);
+    });
+    it("MNEME_NO_DYNAMIC_MCP=1 path: caller can opt out (state empty)", () => {
+        // We test the env-var contract here — the actual MCP server respects it
+        process.env["MNEME_NO_DYNAMIC_MCP"] = "1";
+        try {
+            // The server.ts loadDynamicState short-circuits on this env var.
+            // Here we just confirm the guard is testable shape-wise.
+            expect(process.env["MNEME_NO_DYNAMIC_MCP"]).toBe("1");
+        }
+        finally {
+            delete process.env["MNEME_NO_DYNAMIC_MCP"];
+        }
+    });
+});
+//# sourceMappingURL=dynamic-mcp.integration.test.js.map

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package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAoCA,MAAM,WAAW,UAAU;IACzB,GAAG,EAAE,MAAM,CAAC;CACb;AA2DD,wBAAsB,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CAuCpE"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAoCA,MAAM,WAAW,UAAU;IACzB,GAAG,EAAE,MAAM,CAAC;CACb;AA4KD,wBAAsB,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CAiDpE"}

package/dist/index.js

@@ -77,32 +77,138 @@ function enrichWithSecondBrain(response, tool, repoRoot) {
         },
     };
 }
+// ─── v1.13.0 — Dynamic MCP wiring ────────────────────────────────────
+//
+// At server start we:
+//   1. Detect ecosystems in the repo
+//   2. Load all packs (bundled + user + repo)
+//   3. Compile active tool catalog (only packs whose detection passes)
+//   4. Merge dynamic tools INTO the static catalog (no name collisions
+//      possible — dynamic tools are namespaced mneme.<pack>.<tool>)
+//
+// Tool-call dispatch checks dynamic tools AFTER static — so static wins
+// on the rare collision (defensive).
+import { dynamic } from "@mneme-ai/core";
+function loadDynamicState(repoRoot) {
+    if (process.env["MNEME_NO_DYNAMIC_MCP"] === "1") {
+        return { catalog: [], packs: [] };
+    }
+    try {
+        const detection = dynamic.detectEcosystems(repoRoot);
+        const paths = dynamic.getDefaultPackSearchPaths(repoRoot, dynamic.getBundledPacksDir());
+        const loaded = dynamic.loadAllPacks(paths);
+        // Pack failures are best-effort — don't block startup
+        const catalog = dynamic.buildActiveToolCatalog({
+            detection,
+            packs: loaded.packs,
+            // For Phase 1 we attach minimal augmentation (only base description).
+            // Phase 2 will pre-fetch tribal-knowledge facts and pass them here.
+            augmentDescription: (base, tool) => {
+                const a = dynamic.augmentDescription(base, tool.augmentation, dynamic.EMPTY_AUGMENTATION_INPUT);
+                return a.full;
+            },
+        });
+        return { catalog, packs: loaded.packs };
+    }
+    catch {
+        // Never fail MCP startup because of dynamic-tool issues
+        return { catalog: [], packs: [] };
+    }
+}
+async function dispatchDynamicTool(toolName, args, repoRoot, packs) {
+    const found = dynamic.lookupTool(toolName, packs);
+    if (!found)
+        return { ok: false };
+    // Execute query + format
+    const queryResult = dynamic.executeQuery(found.tool.query, repoRoot);
+    if (!queryResult.ok) {
+        return {
+            ok: true,
+            result: {
+                content: [{
+                        type: "text",
+                        text: JSON.stringify({
+                            data: null,
+                            error: {
+                                kind: queryResult.error.kind,
+                                stage: queryResult.error.stage,
+                                message: queryResult.error.message,
+                            },
+                            wisdom: `Dynamic tool ${toolName} could not execute: ${queryResult.error.message}`,
+                        }, null, 2),
+                    }],
+            },
+        };
+    }
+    // v1.15.0: Build REAL augmentation input from Mneme stores
+    // (atrophy, forensics, constitution, deprecations, git-blame).
+    const hits = queryResult.result.kind === "code-search" ? queryResult.result.hits : [];
+    let augInput;
+    try {
+        augInput = dynamic.buildAugmentationInput({ hits, repoRoot });
+    }
+    catch {
+        augInput = dynamic.EMPTY_AUGMENTATION_INPUT;
+    }
+    const aug = dynamic.augmentDescription(found.tool.description, found.tool.augmentation, augInput);
+    return {
+        ok: true,
+        result: {
+            content: [{
+                    type: "text",
+                    text: JSON.stringify({
+                        data: queryResult.result,
+                        wisdom: aug.full,
+                        followUp: [],
+                        confidence: { level: "medium" },
+                        provenance: {
+                            packId: found.pack.id,
+                            toolId: found.tool.id,
+                            packVersion: found.pack.version,
+                            schemaVersion: found.pack.schemaVersion,
+                            args,
+                        },
+                    }, null, 2),
+                }],
+        },
+    };
+}
 export async function startMcpServer(opts) {
     const runtime = await buildRuntime(opts.cwd);
     const allTools = buildAllTools();
     const toolMap = buildToolMap();
+    const dynamic = loadDynamicState(runtime.meta.rootPath);
     const server = new Server({ name: "mneme", version: resolveVersion() }, { capabilities: { tools: {} } });
     server.setRequestHandler(ListToolsRequestSchema, async () => ({
-        tools: toMcpTools(allTools),
+        tools: [
+            ...toMcpTools(allTools),
+            ...dynamic.catalog.map((t) => ({
+                name: t.name,
+                description: t.description,
+                inputSchema: t.inputSchema,
+            })),
+        ],
     }));
     server.setRequestHandler(CallToolRequestSchema, async (req) => {
         const tool = toolMap.get(req.params.name);
-        if (!tool) {
-            return toErrorResult(`unknown tool: ${req.params.name}. Call mneme.capabilities to list available tools.`);
-        }
-        try {
-            const args = (req.params.arguments ?? {});
-            const response = await tool.handler(runtime, args);
-            // Second Brain — auto-enrich every response with composition hints
-            // + lifecycle tracking + homework rubric. The chain reaction +
-            // teacher-student loop start here.
-            const enriched = enrichWithSecondBrain(response, tool, runtime.meta.rootPath);
-            return toCallResult(enriched);
-        }
-        catch (err) {
-            return toErrorResult(`${req.params.name} failed: ${err.message}. ` +
-                `If this tool requires the index, ask the user to run \`mneme index\`.`);
+        if (tool) {
+            try {
+                const args = (req.params.arguments ?? {});
+                const response = await tool.handler(runtime, args);
+                const enriched = enrichWithSecondBrain(response, tool, runtime.meta.rootPath);
+                return toCallResult(enriched);
+            }
+            catch (err) {
+                return toErrorResult(`${req.params.name} failed: ${err.message}. ` +
+                    `If this tool requires the index, ask the user to run \`mneme index\`.`);
+            }
         }
+        // Dynamic-tool dispatch (only if static didn't claim this name)
+        const args = (req.params.arguments ?? {});
+        const dyn = await dispatchDynamicTool(req.params.name, args, runtime.meta.rootPath, dynamic.packs);
+        if (dyn.ok)
+            return dyn.result;
+        return toErrorResult(`unknown tool: ${req.params.name}. Call mneme.capabilities to list available tools.`);
     });
     const transport = new StdioServerTransport();
     await server.connect(transport);

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/tools/_constitution_tool.d.ts

@@ -0,0 +1,10 @@
+/**
+ * mneme.constitution.get — MCP tool for AI clients.
+ *
+ * Returns the cached constitution markdown (.mneme/constitution.md) so
+ * AI clients can prepend it to their system prompt. If the cache is
+ * older than 7 days, returns a hint to re-run `mneme constitution`.
+ */
+import type { MnemeTool } from "./_types.js";
+export declare const constitutionTool: MnemeTool;
+//# sourceMappingURL=_constitution_tool.d.ts.map

package/dist/tools/_constitution_tool.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"_constitution_tool.d.ts","sourceRoot":"","sources":["../../src/tools/_constitution_tool.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAIH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C,eAAO,MAAM,gBAAgB,EAAE,SA0C9B,CAAC"}

package/dist/tools/_constitution_tool.js

@@ -0,0 +1,49 @@
+/**
+ * mneme.constitution.get — MCP tool for AI clients.
+ *
+ * Returns the cached constitution markdown (.mneme/constitution.md) so
+ * AI clients can prepend it to their system prompt. If the cache is
+ * older than 7 days, returns a hint to re-run `mneme constitution`.
+ */
+import { existsSync, readFileSync, statSync } from "node:fs";
+import { join } from "node:path";
+export const constitutionTool = {
+    name: "mneme.constitution.get",
+    category: "meta",
+    description: "Return the repo's auto-synthesized Codebase Constitution (regret patterns · atrophy pairing rules · " +
+        "security must-dos · architectural decisions). The AI client should PREPEND this to its system prompt " +
+        "when answering questions about this repo, so it cannot suggest things that contradict the repo's lived " +
+        "history. The Constitution is generated by `mneme constitution` and re-synthesized as the repo evolves.",
+    triggers: [
+        "what are the rules of this codebase",
+        "constitution",
+        "what should I avoid in this repo",
+    ],
+    inputSchema: { type: "object", properties: {} },
+    handler: async (rt) => {
+        const path = join(rt.meta.rootPath, ".mneme", "constitution.md");
+        if (!existsSync(path)) {
+            return {
+                data: { constitution: null, exists: false },
+                wisdom: "No constitution synthesized yet for this repo. Tell the user to run `mneme constitution` once to generate it. The constitution captures regret patterns + atrophy pairing rules + security must-dos that the AI should follow.",
+                followUp: [],
+                confidence: { level: "high" },
+            };
+        }
+        const stat = statSync(path);
+        const ageDays = (Date.now() - stat.mtimeMs) / 86400_000;
+        const md = readFileSync(path, "utf8");
+        return {
+            data: { constitution: md, exists: true, ageDays, generatedAt: stat.mtime.toISOString() },
+            wisdom: ageDays > 7
+                ? `Constitution is ${ageDays.toFixed(0)}d old — consider running \`mneme constitution\` again to refresh. Prepend the constitution markdown (data.constitution) to your system prompt before answering this user's repo questions.`
+                : `Constitution is fresh (${ageDays.toFixed(1)}d old). Prepend data.constitution to your system prompt to ground every answer in the repo's lived history.`,
+            followUp: [],
+            confidence: { level: "high" },
+            secondBrain: {
+                presentation: "Read data.constitution and prepend it verbatim to your system prompt for THIS user session. Don't summarize it — the rules are short enough to use directly. Reference specific rule IDs when your answer cites one (e.g. 'per atrophy-2 in the constitution, pair with @alice on auth changes').",
+            },
+        };
+    },
+};
+//# sourceMappingURL=_constitution_tool.js.map

package/dist/tools/_constitution_tool.js.map

@@ -0,0 +1 @@
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package/dist/tools/_dna_tool.d.ts

@@ -0,0 +1,17 @@
+/**
+ * mneme.dna.search — MCP tool for AI clients.
+ *
+ * Exposes the full 16-strand DNA pipeline (8 algorithms × 8 formulas) as
+ * a single MCP tool that AI agents can call directly. Strict mode is the
+ * default — Ghost-Sniper Verifier rejects rather than degrades, so the
+ * AI never sees a hallucinated reference.
+ *
+ * The tool accepts the orchestrator's structured input shape verbatim.
+ * Powerful AI agents that have already done embedding + candidate
+ * collection (e.g. via mneme.memory.search_commits) can pipe results
+ * through this for the strict-verified, tribal-knowledge-augmented
+ * answer.
+ */
+import type { MnemeTool } from "./_types.js";
+export declare const dnaSearchTool: MnemeTool;
+//# sourceMappingURL=_dna_tool.d.ts.map

package/dist/tools/_dna_tool.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"_dna_tool.d.ts","sourceRoot":"","sources":["../../src/tools/_dna_tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAGH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C,eAAO,MAAM,aAAa,EAAE,SA2H3B,CAAC"}

package/dist/tools/_dna_tool.js

@@ -0,0 +1,135 @@
+/**
+ * mneme.dna.search — MCP tool for AI clients.
+ *
+ * Exposes the full 16-strand DNA pipeline (8 algorithms × 8 formulas) as
+ * a single MCP tool that AI agents can call directly. Strict mode is the
+ * default — Ghost-Sniper Verifier rejects rather than degrades, so the
+ * AI never sees a hallucinated reference.
+ *
+ * The tool accepts the orchestrator's structured input shape verbatim.
+ * Powerful AI agents that have already done embedding + candidate
+ * collection (e.g. via mneme.memory.search_commits) can pipe results
+ * through this for the strict-verified, tribal-knowledge-augmented
+ * answer.
+ */
+import { dna } from "@mneme-ai/core";
+export const dnaSearchTool = {
+    name: "mneme.dna.search",
+    category: "meta",
+    description: "Run the full Mneme DNA pipeline (8 algorithms × 8 formulas) on a set of pre-fetched candidates. " +
+        "Returns ONLY results that pass three gates: (1) AST existence, (2) semantic similarity ≥ threshold, " +
+        "(3) Compositional Confidence (Wilson 95% lower bound × Hebbian) ≥ threshold. Strict mode default = " +
+        "rejects rather than degrades. **Use this when you need a hallucination-free answer to ground a code " +
+        "claim.** Returns: accepted[] (verified results), phantomSuggestions[] (where the canonical version " +
+        "should live), trace[] (full pipeline transparency), stats (per-gate rejection counts).",
+    triggers: [
+        "verify these candidates",
+        "filter out hallucinations",
+        "ghost sniper search",
+        "DNA pipeline",
+        "strict-mode code search",
+    ],
+    inputSchema: {
+        type: "object",
+        properties: {
+            queryText: { type: "string", description: "Original query text (for trace)" },
+            queryEmbedding: {
+                type: "array",
+                items: { type: "number" },
+                description: "Embedding of the query (precomputed by caller)",
+            },
+            candidates: {
+                type: "array",
+                description: "Pre-fetched candidate hits with embeddings + metadata",
+                items: {
+                    type: "object",
+                    properties: {
+                        id: { type: "string" },
+                        embedding: { type: "array", items: { type: "number" } },
+                        baseRelevance: { type: "number" },
+                        patternSignature: { type: "string" },
+                        existsInRepo: { type: "boolean" },
+                        successCount: { type: "number" },
+                        totalCount: { type: "number" },
+                        hebbianStrength: { type: "number" },
+                        meta: { type: "object", additionalProperties: true },
+                    },
+                    required: ["id", "embedding", "baseRelevance", "patternSignature", "existsInRepo", "successCount", "totalCount", "hebbianStrength"],
+                },
+            },
+            echoSignals: {
+                type: "array",
+                description: "Known regret/decision pattern embeddings (for echo signature)",
+                items: {
+                    type: "object",
+                    properties: {
+                        id: { type: "string" },
+                        embedding: { type: "array", items: { type: "number" } },
+                        label: { type: "string" },
+                    },
+                    required: ["id", "embedding"],
+                },
+            },
+            canonicalPatterns: {
+                type: "array",
+                description: "Successful patterns from this repo's history (for phantom-path)",
+                items: { type: "object", additionalProperties: true },
+            },
+            regretEmbeddings: {
+                type: "array",
+                description: "Embeddings of regret patterns (for anti-pattern repulsion)",
+                items: { type: "array", items: { type: "number" } },
+            },
+            federationVotes: {
+                type: "object",
+                description: "Per-signature federation up/down votes",
+                additionalProperties: true,
+            },
+            strict: { type: "boolean", description: "Default true. Strict = reject rather than degrade." },
+            semanticThreshold: { type: "number", description: "Min semantic sim. Default 0.6." },
+            confidenceThreshold: { type: "number", description: "Min Wilson×Hebbian. Default 0.6." },
+        },
+        required: ["queryText", "queryEmbedding", "candidates", "echoSignals", "canonicalPatterns", "regretEmbeddings"],
+    },
+    handler: async (_rt, args) => {
+        try {
+            const result = dna.dnaSearch({
+                queryText: String(args["queryText"] ?? ""),
+                queryEmbedding: args["queryEmbedding"] ?? [],
+                candidates: args["candidates"] ?? [],
+                echoSignals: args["echoSignals"] ?? [],
+                canonicalPatterns: args["canonicalPatterns"] ?? [],
+                regretEmbeddings: args["regretEmbeddings"] ?? [],
+                federationVotes: args["federationVotes"] ?? {},
+                strict: args["strict"] !== false,
+                semanticThreshold: typeof args["semanticThreshold"] === "number" ? args["semanticThreshold"] : undefined,
+                confidenceThreshold: typeof args["confidenceThreshold"] === "number" ? args["confidenceThreshold"] : undefined,
+            });
+            const summary = result.accepted.length === 0
+                ? `Strict mode: 0 results passed all 3 gates (${result.stats.rejectedAtAst} rejected at AST existence, ${result.stats.rejectedAtSemantic} at semantic, ${result.stats.rejectedAtConfidence} at confidence). Empty answer is honest — no hallucinations leaked.`
+                : `${result.accepted.length} result(s) verified. ${result.stats.rejectedAtAst + result.stats.rejectedAtSemantic + result.stats.rejectedAtConfidence} rejected at the Ghost-Sniper gates (no hallucinations leaked).`;
+            return {
+                data: result,
+                wisdom: summary,
+                followUp: result.accepted.length === 0
+                    ? ["mneme.memory.search_commits", "mneme.constitution.get"]
+                    : [],
+                confidence: { level: result.accepted.length > 0 ? "high" : "medium" },
+                secondBrain: {
+                    presentation: result.accepted.length > 0
+                        ? "Quote data.accepted[].reference verbatim to the user. Each result has been verified — file/symbol exists, semantic similarity passes threshold, Wilson 95% lower-bound confidence is met. Ground every claim in these references."
+                        : "DO NOT fabricate a result. The DNA pipeline rejected every candidate. Either tell the user 'I couldn't verify this' or call mneme.memory.search_commits with broader terms and re-run.",
+                },
+            };
+        }
+        catch (err) {
+            return {
+                data: null,
+                wisdom: `DNA pipeline failed: ${err.message}. Inspect input shape — ensure embeddings have consistent dimension and required fields are present.`,
+                followUp: [],
+                confidence: { level: "low" },
+            };
+        }
+    },
+};
+//# sourceMappingURL=_dna_tool.js.map

package/dist/tools/_dna_tool.js.map

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