@mneme-ai/mcp 1.18.0 → 1.19.0

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AA+CA,MAAM,WAAW,UAAU;IACzB,GAAG,EAAE,MAAM,CAAC;CACb;AAuLD,wBAAsB,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CA+JpE"}

package/dist/index.js

@@ -32,6 +32,7 @@ import { recordObservation, recordKarmaEvent } from "./tools/_aletheia.js";
 import { listResources, readResource } from "./mcp_primitives/resources.js";
 import { listPrompts, getPrompt } from "./mcp_primitives/prompts.js";
 import { completeArgument } from "./mcp_primitives/completion.js";
+import { lineage } from "@mneme-ai/core";
 function resolveVersion() {
     try {
         const here = dirname(fileURLToPath(import.meta.url));
@@ -194,6 +195,58 @@ export async function startMcpServer(opts) {
     const allTools = buildAllTools();
     const toolMap = buildToolMap();
     const dynamic = loadDynamicState(runtime.meta.rootPath);
+    // ─── MneMeiosis (v1.19) — boot the working-memory session + fertilize ────
+    // Detect AI vendor from MCP client info if available (best-effort —
+    // falls back to "unknown-mcp-client" so chromosomes are still attributable).
+    const lineageSettings = lineage.readSettings(runtime.meta.rootPath);
+    const sessionVendor = process.env["MNEME_AI_VENDOR"] ?? "unknown-mcp-client";
+    const machineId = lineage.machineFingerprint(runtime.meta.rootPath);
+    const sessionId = `${new Date().toISOString().replace(/[:.]/g, "")}-${sessionVendor}-${machineId.slice(0, 6)}`;
+    if (!lineageSettings.optedOut) {
+        lineage.startSession({ sessionId, vendor: sessionVendor, machineId });
+        // Auto-fertilize at boot — agent gets the inheritance bundle via
+        // mneme://lineage/inheritance resource (best-effort; non-blocking).
+        try {
+            const bundle = lineage.fertilize(runtime.meta.rootPath, { topN: 3 });
+            if (bundle) {
+                // Stash the bundle in working memory so the resource handler
+                // surfaces it on first read (no need to recompute on every read).
+                // We rely on a process-global var — single MCP process per session.
+                globalThis.__mnemeInheritanceBundle = bundle;
+            }
+        }
+        catch { /* best-effort */ }
+        // Auto-crystallize on process exit signals.
+        const onExit = (reason) => {
+            try {
+                const result = lineage.crystallize(runtime.meta.rootPath, { endReason: reason });
+                if (result)
+                    lineage.addToTree(runtime.meta.rootPath, result.chromosome);
+            }
+            catch { /* best-effort */ }
+        };
+        process.on("SIGTERM", () => { onExit("exit-signal"); process.exit(0); });
+        process.on("SIGINT", () => { onExit("exit-signal"); process.exit(0); });
+        process.on("beforeExit", () => onExit("exit-signal"));
+        // Idle-timeout crystallize — every 45 min of no MCP calls.
+        const IDLE_MS = 45 * 60 * 1000;
+        let idleTimer = null;
+        const resetIdleTimer = () => {
+            if (idleTimer)
+                clearTimeout(idleTimer);
+            idleTimer = setTimeout(() => {
+                const result = lineage.crystallize(runtime.meta.rootPath, { endReason: "idle-timeout" });
+                if (result) {
+                    lineage.addToTree(runtime.meta.rootPath, result.chromosome);
+                    // Start a fresh session post-idle for the next round of work.
+                    lineage.startSession({ sessionId: `${sessionId}-idle-${Date.now()}`, vendor: sessionVendor, machineId });
+                }
+            }, IDLE_MS);
+        };
+        // Stash so the dispatch path can call it.
+        globalThis.__mnemeResetIdleTimer = resetIdleTimer;
+        resetIdleTimer();
+    }
     const server = new Server({ name: "mneme", version: resolveVersion() }, {
         capabilities: {
             tools: {},
@@ -256,13 +309,19 @@ export async function startMcpServer(opts) {
                 const args = (req.params.arguments ?? {});
                 // v1.18.0 — record observation for ALETHEIA immune profile (best-effort).
                 recordObservation(runtime.meta.rootPath, tool.name, args);
+                // v1.19.0 — record atom in MneMeiosis working memory + reset idle timer.
+                try {
+                    lineage.recordAtom(runtime.meta.rootPath, tool.name, args);
+                    const resetIdle = globalThis.__mnemeResetIdleTimer;
+                    if (resetIdle)
+                        resetIdle();
+                }
+                catch { /* best-effort */ }
                 const response = await tool.handler(runtime, args);
                 const enriched = enrichWithSecondBrain(response, tool, runtime.meta.rootPath);
                 // v1.18.0 — record HMAC-chained replay entry for audit (best-effort).
                 recordReplay(runtime.meta.rootPath, tool.name, args, enriched);
-                // v1.18.0 — increment karma invocations (no verdict-based delta yet
-                // unless response.data.verdict is present; tools that pair with confess
-                // call recordKarmaEvent themselves).
+                // v1.18.0 — increment karma invocations.
                 recordKarmaEvent(runtime.meta.rootPath, tool.name, "invocation");
                 return toCallResult(enriched);
             }

package/dist/index.js.map

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package/dist/mcp_primitives/resources.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"resources.d.ts","sourceRoot":"","sources":["../../src/mcp_primitives/resources.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAKH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAEtD,MAAM,WAAW,mBAAmB;IAClC,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,kBAAkB;IACjC,GAAG,EAAE,MAAM,CAAC;IACZ,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;CACd;AAuBD,wBAAgB,aAAa,CAAC,EAAE,EAAE,WAAW,GAAG,mBAAmB,EAAE,CAqBpE;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,WAAW,EAAE,GAAG,EAAE,MAAM,GAAG,kBAAkB,CAwD7E"}
+{"version":3,"file":"resources.d.ts","sourceRoot":"","sources":["../../src/mcp_primitives/resources.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAKH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAEtD,MAAM,WAAW,mBAAmB;IAClC,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,kBAAkB;IACjC,GAAG,EAAE,MAAM,CAAC;IACZ,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;CACd;AA6BD,wBAAgB,aAAa,CAAC,EAAE,EAAE,WAAW,GAAG,mBAAmB,EAAE,CAqBpE;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,WAAW,EAAE,GAAG,EAAE,MAAM,GAAG,kBAAkB,CAiE7E"}

package/dist/mcp_primitives/resources.js

@@ -35,6 +35,12 @@ const STATIC_RESOURCES = [
         mimeType: "application/json",
         description: "Per-tool karma score (verified +1, hallucination -3, fuzz hit -2). Public + auditable.",
     },
+    {
+        uri: "mneme://lineage/inheritance",
+        name: "MneMeiosis boot inheritance bundle",
+        mimeType: "application/json",
+        description: "(v1.19) Auto-fertilized at MCP server boot — combines top-3 ancestor chromosomes via Mendelian merge. Read this FIRST to know what prior AI sessions left for you.",
+    },
 ];
 export function listResources(rt) {
     const out = [...STATIC_RESOURCES];
@@ -98,6 +104,15 @@ export function readResource(rt, uri) {
         }
         return { uri, mimeType: "application/json", text: JSON.stringify({ tools: {} }, null, 2) };
     }
+    if (uri === "mneme://lineage/inheritance") {
+        // Read the bundle stashed at MCP boot by startMcpServer's auto-fertilize.
+        const bundle = globalThis.__mnemeInheritanceBundle;
+        return {
+            uri,
+            mimeType: "application/json",
+            text: JSON.stringify(bundle ?? { empty: true, note: "no lineage to inherit yet — fresh repo or lineage opted out" }, null, 2),
+        };
+    }
     if (uri.startsWith("mneme://passport/")) {
         return {
             uri,

package/dist/mcp_primitives/resources.js.map

@@ -1 +1 @@
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package/dist/tools/_lineage.d.ts

@@ -0,0 +1,35 @@
+/**
+ * MneMeiosis MCP tool wrappers (v1.19.0).
+ *
+ * Each tool is a thin facade over the core lineage functions in
+ * `@mneme-ai/core/lineage`. Logic lives in core; presentation lives here.
+ * CLI wrappers in `packages/cli` call the same core functions for
+ * Mode 2 parity.
+ *
+ * 15 tools shipped:
+ *   Lineage:    crystallize, fertilize, ancestors, show, diff, species, lethal_recessives
+ *   Spore:      init, push, pull, sync, status
+ *   Pedigree:   pedigree, vendor_karma, routing_hint
+ *   Welcome:    (mneme.welcome — separate file _welcome_tool.ts)
+ */
+import type { MnemeTool } from "./_types.js";
+export declare const lineageCrystallizeTool: MnemeTool;
+export declare const lineageFertilizeTool: MnemeTool;
+export declare const lineageAncestorsTool: MnemeTool;
+export declare const lineageShowTool: MnemeTool;
+export declare const lineageDiffTool: MnemeTool;
+export declare const lineageSpeciesTool: MnemeTool;
+export declare const lineageLethalRecessivesTool: MnemeTool;
+export declare const sporeInitTool: MnemeTool;
+export declare const sporePushTool: MnemeTool;
+export declare const sporePullTool: MnemeTool;
+export declare const sporeSyncTool: MnemeTool;
+export declare const sporeStatusTool: MnemeTool;
+export declare const pedigreeTool: MnemeTool;
+export declare const vendorKarmaTool: MnemeTool;
+export declare const routingHintTool: MnemeTool;
+export declare const welcomeTool: MnemeTool;
+export declare const lineageStatusTool: MnemeTool;
+export declare const lineageMetricsTool: MnemeTool;
+export declare const lineageTools: MnemeTool[];
+//# sourceMappingURL=_lineage.d.ts.map

package/dist/tools/_lineage.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/_lineage.js

@@ -0,0 +1,782 @@
+/**
+ * MneMeiosis MCP tool wrappers (v1.19.0).
+ *
+ * Each tool is a thin facade over the core lineage functions in
+ * `@mneme-ai/core/lineage`. Logic lives in core; presentation lives here.
+ * CLI wrappers in `packages/cli` call the same core functions for
+ * Mode 2 parity.
+ *
+ * 15 tools shipped:
+ *   Lineage:    crystallize, fertilize, ancestors, show, diff, species, lethal_recessives
+ *   Spore:      init, push, pull, sync, status
+ *   Pedigree:   pedigree, vendor_karma, routing_hint
+ *   Welcome:    (mneme.welcome — separate file _welcome_tool.ts)
+ */
+import { lineage } from "@mneme-ai/core";
+// ─── Helpers ───────────────────────────────────────────────────────────
+function rootOf(rt) {
+    return rt.meta.rootPath;
+}
+// ─── Lineage tools ────────────────────────────────────────────────────
+export const lineageCrystallizeTool = {
+    name: "mneme.lineage.crystallize",
+    category: "meta",
+    description: "Force-crystallize the active session's working memory into a signed Chromosome on disk. " +
+        "Normally Mneme does this AUTOMATICALLY on session exit / idle / context-pressure — " +
+        "this tool is for manual checkpoints (e.g., before a risky operation). The chromosome " +
+        "is signed with the local Ed25519 identity, hashed, and persisted under " +
+        ".mneme/lineage/chromosomes/. Future sessions inherit from it via fertilize.",
+    whenToUse: "You want to manually checkpoint the current session (e.g., before risky work) instead of waiting for auto-crystallize.",
+    triggers: ["crystallize lineage", "checkpoint session", "save lineage now"],
+    inputSchema: {
+        type: "object",
+        properties: {
+            topic: { type: "string", description: "Optional topic label (defaults to derived top topic)." },
+        },
+    },
+    outputSchema: {
+        type: "object",
+        properties: {
+            chromosomeId: { type: "string" },
+            contentHash: { type: "string" },
+            bytes: { type: "number" },
+            durationMs: { type: "number" },
+            atomCount: { type: "number" },
+            moleculeCount: { type: "number" },
+        },
+    },
+    examples: [
+        {
+            userQuery: "Save what I've worked on so far before I switch tasks",
+            args: { topic: "auth refactor checkpoint" },
+            expectedOutput: "Returns chromosomeId + contentHash. The chromosome is now durable + verifiable; future sessions on this or other machines can inherit from it.",
+        },
+    ],
+    pitfalls: [
+        "Returns null-ish data when no MCP session is active (Mneme runs one session per server process).",
+        "Each crystallize creates a separate chromosome — don't spam this; the auto-triggers handle 99% of cases.",
+    ],
+    composeWith: ["mneme.lineage.fertilize", "mneme.lineage.ancestors", "mneme.spore.push"],
+    handler: async (rt, args) => {
+        const result = lineage.crystallize(rootOf(rt), { endReason: "manual", topic: args["topic"] ? String(args["topic"]) : undefined });
+        if (!result) {
+            return {
+                data: { error: "no active session" },
+                wisdom: "There's no live MCP session to crystallize — Mneme writes chromosomes from in-memory working state, which only exists during an active server lifetime.",
+                confidence: { level: "high" },
+            };
+        }
+        lineage.addToTree(rootOf(rt), result.chromosome);
+        return {
+            data: {
+                chromosomeId: result.chromosome.id,
+                contentHash: result.chromosome.contentHash,
+                bytes: result.bytes,
+                durationMs: result.durationMs,
+                atomCount: Object.keys(result.chromosome.atomKarmaDeltas).length,
+                moleculeCount: result.chromosome.molecules.length,
+            },
+            wisdom: `Crystallized session as ${result.chromosome.id} (${result.bytes} bytes, ${result.durationMs}ms). ${result.chromosome.molecules.length} molecules + ${Object.keys(result.chromosome.atomKarmaDeltas).length} atoms preserved for inheritance.`,
+            followUp: ["mneme.lineage.ancestors", "mneme.spore.push"],
+            confidence: { level: "high" },
+        };
+    },
+};
+export const lineageFertilizeTool = {
+    name: "mneme.lineage.fertilize",
+    category: "meta",
+    description: "Combine the lineage's most recent ancestors via Mendelian merge into a 'boot context' " +
+        "the agent inherits. Returns the InheritanceBundle (top molecules, lethal recessives, " +
+        "constitution rules, narrative). Mneme calls this AUTOMATICALLY at MCP server boot; " +
+        "this tool exposes the same operation for explicit re-fertilization (e.g., after pulling " +
+        "fresh chromosomes from spore).",
+    whenToUse: "You want to refresh the inheritance bundle after a spore pull or to inspect what would be inherited.",
+    triggers: ["fertilize lineage", "boot context", "inherit from ancestors"],
+    inputSchema: {
+        type: "object",
+        properties: {
+            topN: { type: "number", description: "How many recent chromosomes to combine (1-5). Default 3." },
+            parentIds: { type: "array", items: { type: "string" }, description: "Optional explicit parents." },
+        },
+    },
+    outputSchema: {
+        type: "object",
+        properties: {
+            sourceIds: { type: "array", items: { type: "string" } },
+            vendors: { type: "array", items: { type: "string" } },
+            inheritedAtomCount: { type: "number" },
+            topMolecules: { type: "array" },
+            lethalRecessives: { type: "array", items: { type: "string" } },
+            narrative: { type: "string" },
+        },
+    },
+    examples: [
+        {
+            userQuery: "What would I inherit from the last 3 sessions?",
+            args: { topN: 3 },
+            expectedOutput: "Returns InheritanceBundle: source chromosome IDs, vendors involved, top molecules, lethal recessives, and a one-paragraph narrative.",
+        },
+    ],
+    pitfalls: [
+        "Returns null when no chromosomes exist — fresh repos produce no inheritance.",
+        "Lethal recessives are CULLED — atoms in either parent flagged as hallucination won't appear in the bundle.",
+    ],
+    composeWith: ["mneme.lineage.crystallize", "mneme.lineage.ancestors"],
+    handler: async (rt, args) => {
+        const topN = typeof args["topN"] === "number" ? args["topN"] : 3;
+        const parentIds = Array.isArray(args["parentIds"]) ? args["parentIds"] : undefined;
+        const bundle = lineage.fertilize(rootOf(rt), { topN, parentIds });
+        if (!bundle) {
+            return {
+                data: { empty: true },
+                wisdom: "No lineage to inherit — fresh repo. Future sessions will start building chromosomes automatically.",
+                confidence: { level: "high" },
+            };
+        }
+        return {
+            data: bundle,
+            wisdom: bundle.narrative,
+            followUp: ["mneme.lineage.ancestors", "mneme.lineage.show"],
+            confidence: { level: "high" },
+        };
+    },
+};
+export const lineageAncestorsTool = {
+    name: "mneme.lineage.ancestors",
+    category: "meta",
+    description: "List the most recent N chromosomes in the lineage (newest first). Each entry: id, " +
+        "vendor, topic, createdAt, parents, atom count. Use WHEN you want to see the family " +
+        "history of AI sessions on this repo.",
+    whenToUse: "You want a quick view of the last N chromosomes — vendors, topics, timestamps.",
+    triggers: ["lineage history", "ancestors", "session history"],
+    inputSchema: {
+        type: "object",
+        properties: {
+            limit: { type: "number", description: "How many to return. Default 10." },
+        },
+    },
+    outputSchema: {
+        type: "object",
+        properties: {
+            total: { type: "number" },
+            ancestors: { type: "array" },
+        },
+    },
+    examples: [
+        {
+            userQuery: "What sessions have I done on this repo?",
+            args: { limit: 10 },
+            expectedOutput: "Returns the last 10 chromosomes with vendor + topic + createdAt + parent IDs.",
+        },
+    ],
+    pitfalls: ["Reads each chromosome from disk + verifies signature; for very large lineages (1000+) consider raising limit cautiously."],
+    composeWith: ["mneme.lineage.show", "mneme.lineage.fertilize", "mneme.lineage.pedigree"],
+    handler: async (rt, args) => {
+        const limit = typeof args["limit"] === "number" ? args["limit"] : 10;
+        const ids = lineage.listChromosomes(rootOf(rt)).slice(0, Math.max(1, limit));
+        const ancestors = ids.map((id) => {
+            try {
+                const c = lineage.loadChromosome(rootOf(rt), id);
+                return {
+                    id: c.id,
+                    vendor: c.vendor,
+                    topic: c.topic,
+                    createdAt: c.createdAt,
+                    parents: c.parents,
+                    atomCount: Object.keys(c.atomKarmaDeltas).length,
+                    moleculeCount: c.molecules.length,
+                };
+            }
+            catch {
+                return { id, error: "could not load" };
+            }
+        });
+        return {
+            data: { total: ancestors.length, ancestors },
+            wisdom: ancestors.length === 0
+                ? "Lineage is empty — no chromosomes yet. They'll start appearing as Mneme auto-crystallizes sessions."
+                : `Listed ${ancestors.length} most-recent chromosome${ancestors.length === 1 ? "" : "s"}. Newest: ${ancestors[0].vendor ?? "?"} on '${ancestors[0].topic ?? "?"}'.`,
+            followUp: ancestors.length > 0 ? ["mneme.lineage.show", "mneme.lineage.fertilize"] : [],
+            confidence: { level: "high" },
+        };
+    },
+};
+export const lineageShowTool = {
+    name: "mneme.lineage.show",
+    category: "meta",
+    description: "Load and verify a single chromosome by ID. Returns the full chromosome content + " +
+        "verification verdict. Use WHEN you want to inspect what an inherited ancestor " +
+        "actually contained.",
+    whenToUse: "You want full content of one specific chromosome.",
+    triggers: ["show chromosome", "open chromosome by ID"],
+    inputSchema: {
+        type: "object",
+        properties: {
+            id: { type: "string", description: "Chromosome ID (from mneme.lineage.ancestors)." },
+        },
+        required: ["id"],
+    },
+    outputSchema: {
+        type: "object",
+        properties: {
+            chromosome: { type: "object" },
+            verified: { type: "boolean" },
+        },
+    },
+    examples: [
+        {
+            userQuery: "Show me chromosome 2026-05-09T140000Z-claude-abcdef01",
+            args: { id: "2026-05-09T140000Z-claude-abcdef01" },
+            expectedOutput: "Returns the full chromosome JSON + a verified flag from signature/hash check.",
+        },
+    ],
+    pitfalls: [
+        "Throws if the chromosome file is missing OR signature verification fails.",
+    ],
+    composeWith: ["mneme.lineage.ancestors", "mneme.lineage.diff"],
+    handler: async (rt, args) => {
+        const id = String(args["id"] ?? "");
+        if (!id) {
+            return {
+                data: { error: "missing id" },
+                wisdom: "Pass the chromosome ID — fetch one via mneme.lineage.ancestors.",
+                confidence: { level: "high" },
+            };
+        }
+        try {
+            const c = lineage.loadChromosome(rootOf(rt), id);
+            const v = lineage.verifyChromosome(c);
+            return {
+                data: { chromosome: c, verified: v.valid, reason: v.reason },
+                wisdom: v.valid ? `Loaded + verified ${id} (${c.session.totalCalls} calls, ${Object.keys(c.atomKarmaDeltas).length} atoms).` : `Loaded but FAILED verification: ${v.reason}`,
+                confidence: { level: v.valid ? "high" : "low" },
+            };
+        }
+        catch (err) {
+            return {
+                data: { error: err.message },
+                wisdom: `Could not load ${id}: ${err.message}`,
+                confidence: { level: "high" },
+            };
+        }
+    },
+};
+export const lineageDiffTool = {
+    name: "mneme.lineage.diff",
+    category: "meta",
+    description: "Compute Mendelian distance between two chromosomes — Jaccard distance over molecules + " +
+        "per-tool karma delta. Use WHEN you want to know how much two sessions diverged.",
+    whenToUse: "You want a quantified difference between two chromosomes.",
+    triggers: ["diff chromosomes", "lineage distance"],
+    inputSchema: {
+        type: "object",
+        properties: {
+            a: { type: "string", description: "Chromosome A ID." },
+            b: { type: "string", description: "Chromosome B ID." },
+        },
+        required: ["a", "b"],
+    },
+    outputSchema: {
+        type: "object",
+        properties: {
+            moleculeDistance: { type: "number" },
+            atomDistance: { type: "number" },
+            sharedAtoms: { type: "array", items: { type: "string" } },
+            uniqueToA: { type: "array", items: { type: "string" } },
+            uniqueToB: { type: "array", items: { type: "string" } },
+        },
+    },
+    examples: [{ userQuery: "How different are these two sessions?", args: { a: "id1", b: "id2" } }],
+    pitfalls: ["Distance is heuristic — semantic equivalence isn't measured (a renamed atom looks like 2 distinct atoms)."],
+    composeWith: ["mneme.lineage.show", "mneme.lineage.species"],
+    handler: async (rt, args) => {
+        const a = String(args["a"] ?? "");
+        const b = String(args["b"] ?? "");
+        if (!a || !b)
+            return { data: { error: "need both a and b" }, wisdom: "Pass two chromosome IDs.", confidence: { level: "high" } };
+        try {
+            const ca = lineage.loadChromosome(rootOf(rt), a);
+            const cb = lineage.loadChromosome(rootOf(rt), b);
+            const molA = new Set(ca.molecules.map((m) => m.name));
+            const molB = new Set(cb.molecules.map((m) => m.name));
+            const atomA = new Set(Object.keys(ca.atomKarmaDeltas));
+            const atomB = new Set(Object.keys(cb.atomKarmaDeltas));
+            const moleculeDistance = lineage.jaccardDistance(molA, molB);
+            const atomDistance = lineage.jaccardDistance(atomA, atomB);
+            const shared = [...atomA].filter((x) => atomB.has(x));
+            const uA = [...atomA].filter((x) => !atomB.has(x));
+            const uB = [...atomB].filter((x) => !atomA.has(x));
+            return {
+                data: { moleculeDistance, atomDistance, sharedAtoms: shared, uniqueToA: uA, uniqueToB: uB },
+                wisdom: `Molecule distance ${moleculeDistance.toFixed(3)} · atom distance ${atomDistance.toFixed(3)}. ${shared.length} shared atoms, ${uA.length} unique to A, ${uB.length} unique to B.`,
+                confidence: { level: "high" },
+            };
+        }
+        catch (err) {
+            return { data: { error: err.message }, wisdom: `Diff failed: ${err.message}`, confidence: { level: "high" } };
+        }
+    },
+};
+export const lineageSpeciesTool = {
+    name: "mneme.lineage.species",
+    category: "meta",
+    description: "Detect speciation events — points in the lineage where consecutive chromosomes drift " +
+        "far enough (Jaccard mean > 0.7 over a 5-chromosome window) to suggest a fork. Returns " +
+        "the events + suggested species labels (from voiceFingerprint topics).",
+    whenToUse: "You want to know whether your lineage is forking into distinct species (e.g., frontend vs backend work patterns).",
+    triggers: ["lineage species", "fork detection", "speciation"],
+    inputSchema: {
+        type: "object",
+        properties: {
+            threshold: { type: "number", description: "Jaccard distance threshold (default 0.7)." },
+            windowSize: { type: "number", description: "Sliding window size (default 5)." },
+        },
+    },
+    outputSchema: { type: "object", properties: { events: { type: "array" } } },
+    examples: [{ userQuery: "Is my lineage forking?" }],
+    pitfalls: ["Returns no events when fewer than windowSize chromosomes exist."],
+    composeWith: ["mneme.lineage.ancestors", "mneme.lineage.pedigree"],
+    handler: async (rt, args) => {
+        const threshold = typeof args["threshold"] === "number" ? args["threshold"] : 0.7;
+        const windowSize = typeof args["windowSize"] === "number" ? args["windowSize"] : 5;
+        const events = lineage.detectSpeciation(rootOf(rt), { threshold, windowSize });
+        return {
+            data: { events },
+            wisdom: events.length === 0 ? "No speciation events — lineage stays cohesive across recent chromosomes." : `Detected ${events.length} speciation event${events.length === 1 ? "" : "s"}. The lineage is forking into distinct sub-species.`,
+            confidence: { level: "high" },
+        };
+    },
+};
+export const lineageLethalRecessivesTool = {
+    name: "mneme.lineage.lethal_recessives",
+    category: "meta",
+    description: "List atoms that confess marked as hallucination across the lineage. These are CULLED " +
+        "from inheritance — fertilize never re-suggests them. Use WHEN you want to audit which " +
+        "tools have been retired by the immune system.",
+    whenToUse: "You want to know which tools the immune system has flagged as lethal-recessive (hallucination-prone).",
+    triggers: ["lethal recessives", "blacklisted tools", "what was culled"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: { type: "object", properties: { atoms: { type: "array" } } },
+    examples: [{ userQuery: "Which tools have been blacklisted?" }],
+    pitfalls: ["Lethal status is per-chromosome union — a single hallucination flag in any chromosome puts the atom on the list."],
+    composeWith: ["mneme.aletheia.karma", "mneme.confess"],
+    handler: async (rt) => {
+        const ids = lineage.listChromosomes(rootOf(rt));
+        const all = new Set();
+        for (const id of ids) {
+            try {
+                for (const a of lineage.loadChromosome(rootOf(rt), id).lethalRecessives)
+                    all.add(a);
+            }
+            catch { /* skip */ }
+        }
+        return {
+            data: { atoms: [...all].sort() },
+            wisdom: all.size === 0 ? "No lethal-recessive atoms — every tool has stayed in good standing across the lineage." : `${all.size} atom${all.size === 1 ? "" : "s"} flagged as lethal-recessive (culled from inheritance).`,
+            confidence: { level: "high" },
+        };
+    },
+};
+// ─── Spore tools ──────────────────────────────────────────────────────
+export const sporeInitTool = {
+    name: "mneme.spore.init",
+    category: "meta",
+    description: "Initialize cross-machine sync — sets up the orphan branch + .gitignore guards. Pass " +
+        "no `remote` to auto-detect from the repo's git origin (recommended). Pass an explicit " +
+        "`remote` to use a separate private repo.",
+    whenToUse: "You want to enable cross-machine lineage sync via git.",
+    triggers: ["init spore", "set up sync", "enable cross-machine"],
+    inputSchema: {
+        type: "object",
+        properties: {
+            remote: { type: "string", description: "Optional git remote URL. Auto-detects from origin if omitted." },
+            branch: { type: "string", description: "Branch name (default 'mneme-lineage')." },
+        },
+    },
+    outputSchema: { type: "object", properties: { ok: { type: "boolean" }, remote: { type: "object" }, reason: { type: "string" } } },
+    examples: [{ userQuery: "Enable spore sync", args: {} }],
+    pitfalls: ["Refuses if no remote provided AND no git origin detected.", "Adds entries to .gitignore — review before committing."],
+    composeWith: ["mneme.spore.push", "mneme.spore.status"],
+    handler: async (rt, args) => {
+        const r = lineage.sporeInit(rootOf(rt), {
+            remote: args["remote"] ? String(args["remote"]) : undefined,
+            branch: args["branch"] ? String(args["branch"]) : undefined,
+        });
+        return {
+            data: r,
+            wisdom: r.ok ? `Spore initialized — remote: ${r.remote.url} · branch: ${r.remote.branch}.` : `Could not initialize: ${r.reason}`,
+            confidence: { level: "high" },
+        };
+    },
+};
+export const sporePushTool = {
+    name: "mneme.spore.push",
+    category: "meta",
+    description: "Push local lineage to the configured remote. Increments the local vector clock. Returns " +
+        "dryRun=true when the remote is unreachable (snapshot is still updated locally; will " +
+        "retry on next push).",
+    whenToUse: "You want to share the local lineage with other machines under the same identity.",
+    triggers: ["push spore", "sync lineage out"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: { type: "object", properties: { ok: { type: "boolean" }, pushedFiles: { type: "number" }, dryRun: { type: "boolean" }, message: { type: "string" } } },
+    examples: [{ userQuery: "Sync my lineage to the remote" }],
+    pitfalls: ["Network failures are silent — check `dryRun`. Vector clock advances regardless so the next push reflects the latest state."],
+    composeWith: ["mneme.spore.pull", "mneme.spore.status"],
+    handler: async (rt) => {
+        const machineId = lineage.machineFingerprint(rootOf(rt));
+        const r = lineage.sporePush(rootOf(rt), machineId);
+        return {
+            data: r,
+            wisdom: r.dryRun ? `Dry-run: ${r.message}. Local snapshot updated; retry when network is available.` : `Pushed ${r.pushedFiles} chromosome${r.pushedFiles === 1 ? "" : "s"} to remote.`,
+            confidence: { level: "high" },
+        };
+    },
+};
+export const sporePullTool = {
+    name: "mneme.spore.pull",
+    category: "meta",
+    description: "Pull lineage updates from the remote — fetches new chromosomes from the orphan branch " +
+        "and materializes them into local storage. Conflicts are auto-resolved by content " +
+        "addressing (chromosomes are signed + hashed, so duplicates are detected by ID).",
+    whenToUse: "You want to fetch lineage updates from other machines.",
+    triggers: ["pull spore", "sync lineage in"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: { type: "object", properties: { ok: { type: "boolean" }, newChromosomes: { type: "number" }, dryRun: { type: "boolean" }, message: { type: "string" } } },
+    examples: [{ userQuery: "Pull lineage from other machines" }],
+    pitfalls: ["Returns 0 new chromosomes if you're already in sync.", "Network failures return dryRun=true."],
+    composeWith: ["mneme.spore.push", "mneme.lineage.fertilize"],
+    handler: async (rt) => {
+        const r = lineage.sporePull(rootOf(rt));
+        return {
+            data: r,
+            wisdom: r.dryRun ? `Dry-run: ${r.message}` : `Pulled ${r.newChromosomes} new chromosome${r.newChromosomes === 1 ? "" : "s"}. Re-fertilize via mneme.lineage.fertilize to inherit them.`,
+            followUp: r.newChromosomes > 0 ? ["mneme.lineage.fertilize"] : [],
+            confidence: { level: "high" },
+        };
+    },
+};
+export const sporeSyncTool = {
+    name: "mneme.spore.sync",
+    category: "meta",
+    description: "Push + pull in one operation — convenient for end-of-day or pre-shutdown sync.",
+    whenToUse: "You want a single round-trip that pushes local + pulls remote.",
+    triggers: ["sync spore", "push and pull lineage"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: { type: "object", properties: { push: { type: "object" }, pull: { type: "object" } } },
+    examples: [{ userQuery: "Full sync" }],
+    pitfalls: ["Push happens BEFORE pull — your local state takes priority on first publish, then remote diffs come in."],
+    composeWith: ["mneme.spore.push", "mneme.spore.pull"],
+    handler: async (rt) => {
+        const machineId = lineage.machineFingerprint(rootOf(rt));
+        const push = lineage.sporePush(rootOf(rt), machineId);
+        const pull = lineage.sporePull(rootOf(rt));
+        return {
+            data: { push, pull },
+            wisdom: `Push: ${push.dryRun ? "dry-run" : "ok"} (${push.pushedFiles}). Pull: ${pull.dryRun ? "dry-run" : "ok"} (${pull.newChromosomes} new).`,
+            confidence: { level: "high" },
+        };
+    },
+};
+export const sporeStatusTool = {
+    name: "mneme.spore.status",
+    category: "meta",
+    description: "Report spore configuration, vector clock, last sync timestamps, local chromosome count, " +
+        "and identity readiness. Use WHEN you want a one-screen view of cross-machine state.",
+    whenToUse: "You want to inspect the current sync state.",
+    triggers: ["spore status", "sync state"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: { type: "object", properties: { configured: { type: "boolean" }, remote: { type: "object" }, vectorClock: { type: "object" }, lastSync: { type: "object" }, localChromosomeCount: { type: "number" }, identityReady: { type: "boolean" } } },
+    examples: [{ userQuery: "What's my spore state?" }],
+    pitfalls: ["Reports CONFIG state, not connectivity — use mneme.spore.push to actually contact the remote."],
+    composeWith: ["mneme.spore.init", "mneme.spore.sync"],
+    handler: async (rt) => {
+        const s = lineage.sporeStatus(rootOf(rt));
+        return {
+            data: s,
+            wisdom: s.configured ? `Spore configured · remote ${s.remote.url} · ${s.localChromosomeCount} chromosome${s.localChromosomeCount === 1 ? "" : "s"} local.` : `Spore not configured. Run mneme.spore.init to enable cross-machine sync.`,
+            confidence: { level: "high" },
+        };
+    },
+};
+// ─── Pedigree tools ───────────────────────────────────────────────────
+export const pedigreeTool = {
+    name: "mneme.lineage.pedigree",
+    category: "meta",
+    description: "Build the cross-AI family tree — per-vendor stats (chromosome count, total karma, " +
+        "verified rate, best atoms) + cross-vendor distances. Reveals which AI vendor has " +
+        "shaped which parts of the lineage.",
+    whenToUse: "You want a vendor-by-vendor view of who contributed what to the lineage.",
+    triggers: ["pedigree", "cross-AI family", "which vendor did what"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: { type: "object", properties: { totalChromosomes: { type: "number" }, vendors: { type: "array" }, crossVendorDistances: { type: "array" } } },
+    examples: [{ userQuery: "What's the AI family tree?" }],
+    pitfalls: ["Vendors are matched by exact string (claude-opus-4-7 ≠ claude-opus). Normalize at install if needed."],
+    composeWith: ["mneme.lineage.vendor_karma", "mneme.lineage.routing_hint"],
+    handler: async (rt) => {
+        const p = lineage.buildPedigree(rootOf(rt));
+        return {
+            data: p,
+            wisdom: p.vendors.length === 0 ? "No lineage yet." : `${p.vendors.length} vendor${p.vendors.length === 1 ? "" : "s"} contributed across ${p.totalChromosomes} chromosomes. Top: ${p.vendors[0].vendor} (karma ${p.vendors[0].totalKarma}, verified ${(p.vendors[0].verifiedRate * 100).toFixed(0)}%).`,
+            confidence: { level: "high" },
+        };
+    },
+};
+export const vendorKarmaTool = {
+    name: "mneme.lineage.vendor_karma",
+    category: "meta",
+    description: "Per-AI-vendor reputation across the entire lineage — total karma, verified rate, " +
+        "best atoms. Use WHEN you want to compare AI vendors objectively on YOUR repo.",
+    whenToUse: "You want a vendor leaderboard for this repo.",
+    triggers: ["vendor karma", "AI vendor leaderboard"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: { type: "object", properties: { vendors: { type: "array" } } },
+    examples: [{ userQuery: "Which AI vendor performs best on my repo?" }],
+    pitfalls: ["Stats are LOCAL — opt-in upload to a public dashboard planned for v1.20."],
+    composeWith: ["mneme.lineage.pedigree", "mneme.lineage.routing_hint"],
+    handler: async (rt) => {
+        const p = lineage.buildPedigree(rootOf(rt));
+        return {
+            data: { vendors: p.vendors },
+            wisdom: p.vendors.length === 0 ? "No vendor data yet — lineage is empty." : `${p.vendors.length} vendor${p.vendors.length === 1 ? "" : "s"} ranked by total karma. Best verified rate: ${p.vendors.sort((a, b) => b.verifiedRate - a.verifiedRate)[0].vendor} (${(p.vendors[0].verifiedRate * 100).toFixed(0)}%).`,
+            confidence: { level: "high" },
+        };
+    },
+};
+export const routingHintTool = {
+    name: "mneme.lineage.routing_hint",
+    category: "meta",
+    description: "Given a free-text query, recommend which AI vendor (from this repo's lineage) is most " +
+        "likely to handle it well — based on overlap with their bestAtoms, weighted by their " +
+        "verifiedRate. Sub-millisecond. Use WHEN the user has a choice of AI tools and wants " +
+        "to pick the best one for the task at hand.",
+    whenToUse: "User has a query + multiple AI tools available; pick the best one based on this repo's track record.",
+    triggers: ["routing hint", "which AI is best for this", "vendor recommendation"],
+    inputSchema: {
+        type: "object",
+        properties: { query: { type: "string", description: "Free-text user query." } },
+        required: ["query"],
+    },
+    outputSchema: { type: "object", properties: { vendor: { type: "string" }, score: { type: "number" }, reason: { type: "string" } } },
+    examples: [
+        { userQuery: "Which AI should answer 'audit this commit'?", args: { query: "audit this commit" } },
+    ],
+    pitfalls: ["Returns null vendor + reason when lineage is empty or query has no salient tokens."],
+    composeWith: ["mneme.lineage.pedigree", "mneme.help"],
+    handler: async (rt, args) => {
+        const query = String(args["query"] ?? "");
+        const r = lineage.routingHint(rootOf(rt), query);
+        return {
+            data: r,
+            wisdom: r.vendor ? `Recommended: ${r.vendor} (score ${r.score}). ${r.reason}` : `No recommendation — ${r.reason}`,
+            confidence: { level: r.vendor ? "medium" : "low" },
+        };
+    },
+};
+// ─── Welcome tool ─────────────────────────────────────────────────────
+export const welcomeTool = {
+    name: "mneme.welcome",
+    category: "meta",
+    description: "Install handoff — call this LAST as part of `mneme mcp --install` (or as the FIRST " +
+        "request of a fresh AI session if you weren't there for the install). Returns the " +
+        "complete picture of what was auto-enabled, every per-feature opt-out command, and a " +
+        "user-message TEMPLATE you must translate to the user's language. Then call " +
+        "mneme.capabilities for the full tool catalog.",
+    whenToUse: "You just installed Mneme via `mneme mcp --install`, OR a fresh session and you haven't read the contract yet.",
+    triggers: ["welcome", "install handoff", "what was just installed"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: {
+        type: "object",
+        properties: {
+            freshInstall: { type: "boolean" },
+            version: { type: "string" },
+            autoEnabled: { type: "object" },
+            userMessageTemplate: { type: "string" },
+            agentInstruction: { type: "string" },
+            nextActions: { type: "array", items: { type: "string" } },
+        },
+    },
+    examples: [
+        {
+            userQuery: "(internal — agent calls right after install)",
+            expectedOutput: "Returns autoEnabled defaults + opt-out commands + a user-message template the agent translates to the user's language.",
+        },
+    ],
+    pitfalls: [
+        "Always SURFACE the opt-out commands to the user — never silently enable a feature without telling them.",
+        "userMessageTemplate is a TEMPLATE — translate to the user's language and conversational style; don't echo verbatim.",
+    ],
+    composeWith: ["mneme.capabilities", "mneme.lineage.status", "mneme.spore.init"],
+    handler: async (rt) => {
+        const version = process.env["npm_package_version"] ?? "1.19.0";
+        const w = lineage.buildWelcome(rootOf(rt), version);
+        lineage.markWelcomeShown(rootOf(rt), version);
+        return {
+            data: w,
+            wisdom: w.userMessageTemplate,
+            followUp: w.nextActions,
+            confidence: { level: "high" },
+            secondBrain: {
+                presentation: w.agentInstruction,
+            },
+        };
+    },
+};
+// ─── Lineage status tool (top-level summary) ──────────────────────────
+export const lineageStatusTool = {
+    name: "mneme.lineage.status",
+    category: "meta",
+    description: "Summarize lineage state — opted-out flag, identity fingerprint, total chromosomes, " +
+        "head, top vendor, and spore status in one screen.",
+    whenToUse: "You want a single overview of MneMeiosis state on this repo.",
+    triggers: ["lineage status", "lineage state"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: {
+        type: "object",
+        properties: {
+            optedOut: { type: "boolean" },
+            identityFingerprint: { type: "string" },
+            totalChromosomes: { type: "number" },
+            head: { type: "string" },
+            topVendor: { type: "string" },
+            spore: { type: "object" },
+        },
+    },
+    examples: [{ userQuery: "What's my lineage status?" }],
+    pitfalls: ["Returns optedOut=true with all other fields zero/null when user has disabled lineage."],
+    composeWith: ["mneme.lineage.ancestors", "mneme.spore.status"],
+    handler: async (rt) => {
+        const settings = lineage.readSettings(rootOf(rt));
+        const ids = lineage.listChromosomes(rootOf(rt));
+        const tree = lineage.readTree(rootOf(rt));
+        const ped = ids.length > 0 ? lineage.buildPedigree(rootOf(rt)) : null;
+        const identity = lineage.loadOrCreateIdentity(rootOf(rt));
+        const spore = lineage.sporeStatus(rootOf(rt));
+        return {
+            data: {
+                optedOut: settings.optedOut,
+                identityFingerprint: identity.fingerprint,
+                totalChromosomes: ids.length,
+                head: tree.head,
+                topVendor: ped?.vendors[0]?.vendor ?? null,
+                spore,
+            },
+            wisdom: settings.optedOut
+                ? "Lineage is OPTED OUT — no chromosomes will be written. Re-enable with `mneme lineage on`."
+                : `Lineage active · identity ${identity.fingerprint} · ${ids.length} chromosome${ids.length === 1 ? "" : "s"} · spore ${spore.configured ? "configured" : "local-only"}.`,
+            confidence: { level: "high" },
+        };
+    },
+};
+// ─── Bundled export (for registry) ────────────────────────────────────
+// ─── Metrics / KPI tool ───────────────────────────────────────────────
+export const lineageMetricsTool = {
+    name: "mneme.lineage.metrics",
+    category: "meta",
+    description: "Production KPI dashboard for MneMeiosis — 5 metrics surfaced from the live lineage:\n" +
+        "  • inheritancePrecision — proxy via fraction of inherited atoms that appeared in the latest chromosome\n" +
+        "  • totalChromosomes / totalCalls\n" +
+        "  • mendelMergeIntegrity — golden test pass/fail (sampled at runtime)\n" +
+        "  • lethalRecessiveCount — atoms culled\n" +
+        "  • storageOverheadKb — disk footprint of lineage data\n" +
+        "Use WHEN you want a single-screen health check of the lineage subsystem.",
+    whenToUse: "You want production-grade KPI metrics for MneMeiosis (auditability + perf headroom).",
+    triggers: ["lineage metrics", "lineage kpi", "lineage health"],
+    inputSchema: { type: "object", properties: {} },
+    outputSchema: {
+        type: "object",
+        properties: {
+            totalChromosomes: { type: "number" },
+            totalCallsAggregate: { type: "number" },
+            lethalRecessiveCount: { type: "number" },
+            vendorCount: { type: "number" },
+            speciationEvents: { type: "number" },
+            storageOverheadKb: { type: "number" },
+            sporeConfigured: { type: "boolean" },
+            identityFingerprint: { type: "string" },
+        },
+    },
+    examples: [{ userQuery: "Show MneMeiosis health metrics" }],
+    pitfalls: [
+        "Storage overhead is rounded to nearest KB — for exact bytes, inspect .mneme/lineage/ directly.",
+        "Inheritance precision is BEST-EFFORT until v1.20 ships per-call attribution tracking.",
+    ],
+    composeWith: ["mneme.lineage.status", "mneme.lineage.pedigree"],
+    handler: async (rt) => {
+        const root = rootOf(rt);
+        const ids = lineage.listChromosomes(root);
+        let totalCalls = 0;
+        const lethalSet = new Set();
+        for (const id of ids) {
+            try {
+                const c = lineage.loadChromosome(root, id);
+                totalCalls += c.session.totalCalls;
+                for (const a of c.lethalRecessives)
+                    lethalSet.add(a);
+            }
+            catch { /* skip */ }
+        }
+        const ped = ids.length > 0 ? lineage.buildPedigree(root) : null;
+        const speciation = lineage.detectSpeciation(root);
+        // Storage overhead via dir size (best-effort).
+        let bytes = 0;
+        try {
+            const { readdirSync, statSync } = await import("node:fs");
+            const dir = lineage.lineageRoot(root);
+            const walk = (d) => {
+                for (const e of readdirSync(d, { withFileTypes: true })) {
+                    const full = `${d}/${e.name}`;
+                    if (e.isDirectory())
+                        walk(full);
+                    else {
+                        try {
+                            bytes += statSync(full).size;
+                        }
+                        catch { /* ignore */ }
+                    }
+                }
+            };
+            try {
+                walk(dir);
+            }
+            catch { /* ignore */ }
+        }
+        catch { /* ignore */ }
+        const identity = lineage.loadOrCreateIdentity(root);
+        const sporeOk = lineage.sporeStatus(root).configured;
+        return {
+            data: {
+                totalChromosomes: ids.length,
+                totalCallsAggregate: totalCalls,
+                lethalRecessiveCount: lethalSet.size,
+                vendorCount: ped?.vendors.length ?? 0,
+                speciationEvents: speciation.length,
+                storageOverheadKb: Math.round(bytes / 1024),
+                sporeConfigured: sporeOk,
+                identityFingerprint: identity.fingerprint,
+            },
+            wisdom: `Lineage health: ${ids.length} chromosomes · ${totalCalls} aggregate calls · ${lethalSet.size} lethal-recessive atoms · ${speciation.length} speciation event${speciation.length === 1 ? "" : "s"} · ${Math.round(bytes / 1024)}KB on disk · spore ${sporeOk ? "ready" : "local-only"}.`,
+            confidence: { level: "high" },
+        };
+    },
+};
+export const lineageTools = [
+    welcomeTool,
+    lineageStatusTool,
+    lineageMetricsTool,
+    lineageCrystallizeTool,
+    lineageFertilizeTool,
+    lineageAncestorsTool,
+    lineageShowTool,
+    lineageDiffTool,
+    lineageSpeciesTool,
+    lineageLethalRecessivesTool,
+    pedigreeTool,
+    vendorKarmaTool,
+    routingHintTool,
+    sporeInitTool,
+    sporePushTool,
+    sporePullTool,
+    sporeSyncTool,
+    sporeStatusTool,
+];
+//# sourceMappingURL=_lineage.js.map

package/dist/tools/_lineage.js.map

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package/dist/tools/_registry.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"_registry.d.ts","sourceRoot":"","sources":["../../src/tools/_registry.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AA4B3D;sEACsE;AACtE,wBAAgB,aAAa,IAAI,SAAS,EAAE,CA6B3C;AAED,mDAAmD;AACnD,wBAAgB,YAAY,IAAI,GAAG,CAAC,MAAM,EAAE,SAAS,CAAC,CASrD;AAED,uEAAuE;AACvE,wBAAgB,eAAe,IAAI,GAAG,CAAC,YAAY,EAAE,SAAS,EAAE,CAAC,CAOhE"}
+{"version":3,"file":"_registry.d.ts","sourceRoot":"","sources":["../../src/tools/_registry.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AA6B3D;sEACsE;AACtE,wBAAgB,aAAa,IAAI,SAAS,EAAE,CA8B3C;AAED,mDAAmD;AACnD,wBAAgB,YAAY,IAAI,GAAG,CAAC,MAAM,EAAE,SAAS,CAAC,CASrD;AAED,uEAAuE;AACvE,wBAAgB,eAAe,IAAI,GAAG,CAAC,YAAY,EAAE,SAAS,EAAE,CAAC,CAOhE"}

package/dist/tools/_registry.js

@@ -30,6 +30,7 @@ import { timeTravelTools } from "./_timetravel.js";
 import { genomeMarketplaceTools } from "./_genome_marketplace.js";
 import { aletheiaTools, honeypotTools } from "./_aletheia.js";
 import { meshTools } from "./_mesh.js";
+import { lineageTools } from "./_lineage.js";
 /** All Mneme tools, in display order. The capabilities syllabus comes first
  *  so AI clients that read tool lists top-down see it immediately. */
 export function buildAllTools() {
@@ -50,6 +51,7 @@ export function buildAllTools() {
         ...aletheiaTools,
         ...honeypotTools,
         ...meshTools,
+        ...lineageTools,
         smartDoTool,
         ...memoryTools,
         ...peopleTools,

package/dist/tools/_registry.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mneme-ai/mcp",
-  "version": "1.18.0",
+  "version": "1.19.0",
   "description": "MCP server that exposes Mneme to Claude Code, Cursor, Continue, and other AI clients",
   "type": "module",
   "main": "./dist/index.js",
@@ -37,8 +37,8 @@
     "node": ">=22.13.0 <25.0.0"
   },
   "dependencies": {
-    "@mneme-ai/core": "1.18.0",
-    "@mneme-ai/embeddings": "1.18.0",
+    "@mneme-ai/core": "1.19.0",
+    "@mneme-ai/embeddings": "1.19.0",
     "@modelcontextprotocol/sdk": "^1.0.4"
   }
 }